BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12820
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 80/142 (56%), Gaps = 14/142 (9%)
Query: 17 MQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTR------VKVLLRVLAARHL 70
M V F+ NGGCGY+L+PAF+ DP + +T+ ++ +R+++ + L
Sbjct: 454 MDVYLGCFQDNGGCGYVLKPAFL----RDPNTTFNSRALTQGPWWRPERLRVRIISGQQL 509
Query: 71 TRSGRCTTS---PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALL 127
+ + S P V VE+ G DTG + T +++NGFNP W+ EF V P++AL+
Sbjct: 510 PKVNKNKNSIVDPKVIVEIHGVGRDTGSR-QTAVITNNGFNPRWDMEFEFEVTVPDLALV 568
Query: 128 RFVCQDEDMFGDSNFIGQATYP 149
RF+ +D D ++FIGQ+T P
Sbjct: 569 RFMVEDYDSSSKNDFIGQSTIP 590
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 80/142 (56%), Gaps = 14/142 (9%)
Query: 17 MQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTR------VKVLLRVLAARHL 70
M V F+ NGGCGY+L+PAF+ DP + +T+ ++ +R+++ + L
Sbjct: 452 MDVYLGCFQDNGGCGYVLKPAFL----RDPNTTFNSRALTQGPWWRPERLRVRIISGQQL 507
Query: 71 TRSGRCTTS---PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALL 127
+ + S P V VE+ G DTG + T +++NGFNP W+ EF V P++AL+
Sbjct: 508 PKVNKNKNSIVDPKVIVEIHGVGRDTGSR-QTAVITNNGFNPRWDMEFEFEVTVPDLALV 566
Query: 128 RFVCQDEDMFGDSNFIGQATYP 149
RF+ +D D ++FIGQ+T P
Sbjct: 567 RFMVEDYDSSSKNDFIGQSTIP 588
>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
Length = 813
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 76/140 (54%), Gaps = 12/140 (8%)
Query: 16 AMQVNHAKFRMNGGCGYLLRPAFM--FSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
AM VN F NG GYLL+P FM + +DP+ +++ GV + +++++A+ L+
Sbjct: 606 AMCVNLGVFEYNGCSGYLLKPEFMRKLDKRFDPFTESTVDGVVAGTIEIKIISAQFLSDK 665
Query: 74 GRCTTSPFVEVEVLGADYDT-GLKLTTKTVSDNGFNPTWNESCEF--TVHNPEMALLRFV 130
S +VEVE+ G DT K TKTV++NG +P +NE+ V P++A++R +
Sbjct: 666 ---QISSYVEVEMYGLPTDTVRKKFKTKTVNNNGMDPYYNENAFVFKKVVLPDLAVVRII 722
Query: 131 CQDEDMFGDSNFIGQATYPV 150
++ FIG P+
Sbjct: 723 VNED----GGKFIGHRLMPL 738
>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21
Length = 816
Score = 69.3 bits (168), Expect = 9e-13, Method: Composition-based stats.
Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 12/140 (8%)
Query: 16 AMQVNHAKFRMNGGCGYLLRPAFM--FSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
AM VN F NG GYLL+P FM + +DP+ +++ GV + +++++A+ L+
Sbjct: 606 AMCVNLGVFEYNGCSGYLLKPEFMRKLDKRFDPFTESTVDGVVAGTIEIKIISAQFLSDK 665
Query: 74 GRCTTSPFVEVEVLGADYDT-GLKLTTKTVSDNGFNPTWNESCEF--TVHNPEMALLRFV 130
S +VEVE+ G DT K TK + +NG +P ++E V P++A++R +
Sbjct: 666 ---QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRII 722
Query: 131 CQDEDMFGDSNFIGQATYPV 150
+E + FIG P+
Sbjct: 723 VSEE----NGKFIGHRVMPL 738
>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 1235
Score = 68.6 bits (166), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Query: 13 INKAMQVNHAKFRMNGGCGYLLRPAFMF--SESYDPYDPTSLVGVTRVKVLLRVLAARHL 70
++ AMQ+N F NG GYLL+P FM +S+DP+ + G+ + ++V++ + L
Sbjct: 680 LDVAMQLNAGVFEYNGRSGYLLKPEFMRRPDKSFDPFTEVIVDGIVANALRVKVISGQFL 739
Query: 71 TRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNES-CEF-TVHNPEMALLR 128
+ +VEV++ G DT K T+T N FNP W+E +F V P +A LR
Sbjct: 740 SDR---KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLR 796
Query: 129 FVCQDEDMFGDSNFIGQATYPVYTNR 154
+E F+G PV R
Sbjct: 797 IAAFEE----GGKFVGHRILPVSAIR 818
>pdb|3OHM|B Chain B, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 885
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Query: 13 INKAMQVNHAKFRMNGGCGYLLRPAFMF--SESYDPYDPTSLVGVTRVKVLLRVLAARHL 70
++ AMQ+N F NG GYLL+P FM +S+DP+ + G+ + ++V++ + L
Sbjct: 678 LDVAMQLNAGVFEYNGRSGYLLKPEFMRRPDKSFDPFTEVIVDGIVANALRVKVISGQFL 737
Query: 71 TRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESC-EF-TVHNPEMALLR 128
+ +VEV++ G DT K T+T N FNP W+E +F V P +A LR
Sbjct: 738 SDR---KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLR 794
Query: 129 FVCQDEDMFGDSNFIGQATYPVYTNR 154
+E F+G PV R
Sbjct: 795 IAAFEE----GGKFVGHRILPVSAIR 816
>pdb|2FJU|B Chain B, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
pdb|2ZKM|X Chain X, Crystal Structure Of Phospholipase C Beta 2
Length = 799
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 14/140 (10%)
Query: 17 MQVNHAKFRMNGGCGYLLRPAFMF--SESYDPYDPTSLVGVTRVKVLLRVLAARHLT-RS 73
MQ N A F NG GYLL+ FM + ++P+ + V + + V++ + L+ RS
Sbjct: 635 MQQNMAVFEFNGQSGYLLKHEFMRRPDKQFNPFSVDRIDVVVATTLSITVISGQFLSERS 694
Query: 74 GRCTTSPFVEVEVLGADYDTGLKLTTK-TVSDNGFNPTWNESCEF--TVHNPEMALLRFV 130
R +VEVE+ G D + TK + S N NP W E + PE+A LR
Sbjct: 695 VRT----YVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVA 750
Query: 131 CQDEDMFGDSNFIGQATYPV 150
+E + F+G P+
Sbjct: 751 VMEE----GNKFLGHRIIPI 766
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 60 VLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT 118
V +RV+A L + S P+V V + + TKT+ NP WNE F
Sbjct: 22 VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIK-KSLNPKWNEEILFR 80
Query: 119 VHNPEMALLRFVCQDEDMFGDSNFIGQATYPVY 151
VH P+ L F DE+ +F+GQ P+Y
Sbjct: 81 VH-PQQHRLLFEVFDENRLTRDDFLGQVDVPLY 112
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 42.7 bits (99), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 78 TSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF 137
++P+ E+ + Y TT+T+ D NP WN +C+F + + +L D D F
Sbjct: 408 SNPYCEISMGSQSY------TTRTIQDT-LNPKWNFNCQFFIKDLYQDVLCLTLFDRDQF 460
Query: 138 GDSNFIGQATYPV 150
+F+G+ PV
Sbjct: 461 SPDDFLGRTEIPV 473
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 80 PFVEVEVL-GADYDTGLKLTTKTVSDNGFNPTWNESCEF---TVHNPEMALLRFVCQDED 135
P+V++ +L GA KL TKT+ N NP WNE+ ++ T + + LR DED
Sbjct: 52 PYVKLHLLPGASKSN--KLRTKTLR-NTRNPVWNETLQYHGITEEDMQRKTLRISVCDED 108
Query: 136 MFGDSNFIGQATYPV 150
FG + FIG+ + +
Sbjct: 109 KFGHNEFIGETRFSL 123
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 15/118 (12%)
Query: 37 AFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVL-GADYDTGL 95
A FS YD + + R K L + + +G P+V++ +L GA
Sbjct: 15 ALEFSLLYDQDNSNLQCTIIRAKGL------KPMDSNG--LADPYVKLHLLPGASKSN-- 64
Query: 96 KLTTKTVSDNGFNPTWNESCEF---TVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
KL TKT+ N NP WNE+ ++ T + + LR DED FG + FIG+ + +
Sbjct: 65 KLRTKTLR-NTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL 121
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 55 VTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNES 114
+ RVKV+ + A+ + + P+V++ + AD + L L NP WNE
Sbjct: 22 ILRVKVVSGIDLAK---KDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEE 78
Query: 115 CEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
F V NP L F DE+ +F+GQ P+
Sbjct: 79 FYFRV-NPSNHRLLFEVFDENRLTRDDFLGQVDVPL 113
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 55 VTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNES 114
V RVKV+ + A+ + + P+V V + + TKT+ NP WNE
Sbjct: 9 VVRVKVIAGIGLAK---KDILGASDPYVRVTLYDPMSGILTSVQTKTIK-KSLNPKWNEE 64
Query: 115 CEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVY 151
F V P+ + F DE+ +F+GQ P+Y
Sbjct: 65 ILFRVL-PQRHRILFEVFDENRLTRDDFLGQVDVPLY 100
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 59 KVLLRVLAARHL-TRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEF 117
++++R+L A L + + P+V++ +L D K TK V NP +NE+ +F
Sbjct: 21 QLVVRILQALDLPAKDSNGFSDPYVKIYLLP---DRKKKFQTK-VHRKTLNPIFNETFQF 76
Query: 118 TVHNPEMAL--LRFVCQDEDMFGDSNFIGQ 145
+V E+A L F D D F + IGQ
Sbjct: 77 SVPLAELAQRKLHFSVYDFDRFSRHDLIGQ 106
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 78 TSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTV--HNPEMALLRFVCQDED 135
+ P+V+ ++ LK ++ N NPT+NE+ F V + E L D D
Sbjct: 173 SDPYVKASLISEG--RRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD 230
Query: 136 MFGDSNFIG 144
G + IG
Sbjct: 231 CIGHNEVIG 239
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 59 KVLLRVLAARHL-TRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEF 117
++++R+L A L + + P+V++ +L D K TK V NP +NE+ +F
Sbjct: 22 QLVVRILQALDLPAKDSNGFSDPYVKIYLLP---DRKKKFQTK-VHRKTLNPIFNETFQF 77
Query: 118 TVHNPEMAL--LRFVCQDEDMFGDSNFIGQ 145
+V E+A L F D D F + IGQ
Sbjct: 78 SVPLAELAQRKLHFSVYDFDRFSRHDLIGQ 107
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 78 TSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTV--HNPEMALLRFVCQDED 135
+ P+V+ ++ LK ++ N NPT+NE+ F V + E L D D
Sbjct: 174 SDPYVKASLISEG--RRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD 231
Query: 136 MFGDSNFIG 144
G + IG
Sbjct: 232 CIGHNEVIG 240
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 33.1 bits (74), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 104 DNGFNPTWNESCEFTVHNPEM---ALLRFVCQDEDMFGDSNFIGQAT 147
DN NP WNE EF + + + L + +D + G + IG AT
Sbjct: 46 DNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTAT 92
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 33.1 bits (74), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 18/105 (17%)
Query: 59 KVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEF 117
K+ + V+ A+ L + +S P+V V+V K TKT+ N NP W E+ F
Sbjct: 18 KISITVVCAQGLQAKDKTGSSDPYVTVQV------GKTKKRTKTIYGN-LNPVWEENFHF 70
Query: 118 TVHNPEMAL-LRFVCQDEDMFG---------DSNFIGQATYPVYT 152
HN + +R + +D+D+ +F+GQ V T
Sbjct: 71 ECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRT 115
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 104 DNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
+N NP WNE+ EF + + +L D + D +G AT+ V
Sbjct: 49 NNDINPVWNETFEFILDPNQENVLEITLMDANYVMDET-LGTATFTV 94
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 104 DNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
+N NP WNE+ EF + + +L D + D +G AT+ V
Sbjct: 64 NNDINPVWNETFEFILDPNQENVLEITLMDANYVMDET-LGTATFTV 109
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 29.6 bits (65), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 57 RVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCE 116
R K+++ V A R+L + P+V + +L +G + T VS NP +++S +
Sbjct: 23 RNKLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTH--VSKKTLNPVFDQSFD 80
Query: 117 FTVHNPEM 124
F+V PE+
Sbjct: 81 FSVSLPEV 88
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 104 DNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
+N NP WNE+ EF + + +L D + D +G AT+ V
Sbjct: 64 NNDINPVWNETFEFILDPNQENVLEITLMDANYVMDET-LGTATFTV 109
>pdb|2ZTJ|A Chain A, Crystal Structure Of Homocitrate Synthase From Thermus
Thermophilus Complexed With Alpha-Ketoglutarate
pdb|2ZTK|A Chain A, Crystal Structure Of Homocitrate Synthase From Thermus
Thermophilus Complexed With Homocitrate
pdb|2ZYF|A Chain A, Crystal Structure Of Homocitrate Synthase From Thermus
Thermophilus Complexed With Magnesuim Ion And
Alpha-Ketoglutarate
Length = 382
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 30 CGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
G L+ ++ E+Y+PY P + GV R ++ L RH ++
Sbjct: 289 AGMHLKAIYINPEAYEPY-PPEVFGVKRKLIIASRLTGRHAIKA 331
>pdb|3A9I|A Chain A, Crystal Structure Of Homocitrate Synthase From Thermus
Thermophilus Complexed With Lys
Length = 376
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 30 CGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRS 73
G L+ ++ E+Y+PY P + GV R ++ L RH ++
Sbjct: 289 AGMHLKAIYINPEAYEPY-PPEVFGVKRKLIIASRLTGRHAIKA 331
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 106 GFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
G P WNE+ FTV L + D+D+ + + +G+AT P+
Sbjct: 53 GTTPEWNETFIFTVSEGTTELKAKIF-DKDVGTEDDAVGEATIPL 96
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 54 GVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTT--------KTVSDN 105
G+ + R+LA R L R+G T S + + A D+G ++ T +N
Sbjct: 89 GIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAA--DSGAEVINLSLGCDCHTTTLEN 146
Query: 106 GFNPTWNESC 115
N WN+
Sbjct: 147 AVNYAWNKGS 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,780,705
Number of Sequences: 62578
Number of extensions: 180342
Number of successful extensions: 251
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 231
Number of HSP's gapped (non-prelim): 31
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)