Query psy12820
Match_columns 156
No_of_seqs 234 out of 1715
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 20:41:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02223 phosphoinositide phos 100.0 7.1E-45 1.5E-49 288.6 14.9 147 2-155 354-510 (537)
2 KOG0169|consensus 100.0 1E-44 2.2E-49 292.9 11.0 149 2-155 562-717 (746)
3 PLN02230 phosphoinositide phos 100.0 2.5E-44 5.5E-49 289.9 13.3 147 2-155 413-571 (598)
4 PLN02222 phosphoinositide phos 100.0 6.1E-44 1.3E-48 287.2 14.6 147 2-155 396-554 (581)
5 KOG1264|consensus 100.0 8.6E-44 1.9E-48 287.9 13.3 151 3-155 1011-1162(1267)
6 PLN02952 phosphoinositide phos 100.0 9.5E-43 2E-47 281.2 14.5 147 2-155 414-572 (599)
7 PLN02228 Phosphoinositide phos 100.0 4.1E-42 9E-47 276.1 13.9 147 2-155 378-534 (567)
8 KOG1265|consensus 100.0 9.4E-37 2E-41 248.6 9.5 145 3-155 647-796 (1189)
9 cd08395 C2C_Munc13 C2 domain t 99.9 1.3E-23 2.8E-28 140.0 11.7 96 59-155 1-100 (120)
10 cd08677 C2A_Synaptotagmin-13 C 99.9 4.7E-23 1E-27 136.1 9.6 92 57-153 13-106 (118)
11 cd08381 C2B_PI3K_class_II C2 d 99.9 7.1E-22 1.5E-26 132.3 10.6 96 57-154 12-110 (122)
12 cd04029 C2A_SLP-4_5 C2 domain 99.9 5.1E-21 1.1E-25 128.7 10.8 97 57-155 14-114 (125)
13 cd08392 C2A_SLP-3 C2 domain fi 99.9 4.3E-21 9.4E-26 129.5 10.0 96 57-154 14-113 (128)
14 cd08393 C2A_SLP-1_2 C2 domain 99.9 3.8E-21 8.3E-26 129.3 9.6 95 58-154 15-113 (125)
15 cd04028 C2B_RIM1alpha C2 domai 99.9 1.5E-20 3.2E-25 129.1 12.4 95 57-154 28-125 (146)
16 cd08680 C2_Kibra C2 domain fou 99.9 6.5E-21 1.4E-25 127.8 9.7 97 57-154 13-112 (124)
17 cd08692 C2B_Tac2-N C2 domain s 99.9 1.1E-20 2.5E-25 127.5 10.8 95 57-152 13-109 (135)
18 cd04016 C2_Tollip C2 domain pr 99.8 2.6E-20 5.7E-25 124.3 11.9 87 58-151 2-88 (121)
19 cd08407 C2B_Synaptotagmin-13 C 99.8 1.1E-20 2.4E-25 128.8 9.2 94 57-152 14-112 (138)
20 cd08406 C2B_Synaptotagmin-12 C 99.8 1.3E-20 2.9E-25 128.3 9.3 93 58-152 15-110 (136)
21 cd04010 C2B_RasA3 C2 domain se 99.8 2.7E-20 5.8E-25 128.3 10.6 94 59-155 1-109 (148)
22 cd08682 C2_Rab11-FIP_classI C2 99.8 2.3E-20 4.9E-25 125.6 10.0 88 60-154 1-94 (126)
23 cd04039 C2_PSD C2 domain prese 99.8 3.5E-20 7.5E-25 121.6 10.5 89 59-154 2-96 (108)
24 cd08685 C2_RGS-like C2 domain 99.8 2.1E-20 4.6E-25 124.6 9.3 96 57-154 11-108 (119)
25 cd04041 C2A_fungal C2 domain f 99.8 5.3E-20 1.2E-24 121.3 10.0 92 59-154 2-98 (111)
26 KOG1030|consensus 99.8 4.7E-20 1E-24 126.8 9.5 89 58-154 6-95 (168)
27 cd08388 C2A_Synaptotagmin-4-11 99.8 1.1E-19 2.4E-24 122.7 10.6 93 57-153 15-112 (128)
28 cd04036 C2_cPLA2 C2 domain pre 99.8 1.1E-19 2.4E-24 121.1 9.9 90 60-154 2-92 (119)
29 cd08408 C2B_Synaptotagmin-14_1 99.8 9.9E-20 2.2E-24 124.3 9.7 96 57-153 14-112 (138)
30 cd08375 C2_Intersectin C2 doma 99.8 1.7E-19 3.7E-24 122.9 10.8 92 57-155 14-106 (136)
31 cd08385 C2A_Synaptotagmin-1-5- 99.8 1.3E-19 2.7E-24 121.6 9.7 94 57-154 15-111 (124)
32 cd00275 C2_PLC_like C2 domain 99.8 4.9E-19 1.1E-23 119.0 12.1 95 58-154 2-100 (128)
33 cd08681 C2_fungal_Inn1p-like C 99.8 1.9E-19 4.1E-24 119.7 9.8 88 59-153 2-90 (118)
34 cd04031 C2A_RIM1alpha C2 domai 99.8 2.4E-19 5.1E-24 120.3 10.3 94 57-152 15-112 (125)
35 cd08379 C2D_MCTP_PRT_plant C2 99.8 2.4E-19 5.3E-24 120.4 10.1 87 60-154 2-98 (126)
36 cd04018 C2C_Ferlin C2 domain t 99.8 1.9E-19 4.1E-24 124.4 9.7 90 59-155 1-106 (151)
37 cd08384 C2B_Rabphilin_Doc2 C2 99.8 2.8E-19 6E-24 121.3 10.4 94 57-152 12-108 (133)
38 cd04030 C2C_KIAA1228 C2 domain 99.8 3.2E-19 7E-24 119.9 10.7 96 57-154 15-115 (127)
39 cd04009 C2B_Munc13-like C2 dom 99.8 3.5E-19 7.6E-24 120.9 10.9 97 58-155 16-118 (133)
40 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.9E-19 4E-24 121.3 9.4 89 59-154 1-94 (127)
41 cd04032 C2_Perforin C2 domain 99.8 4.1E-19 8.9E-24 119.5 11.0 91 56-153 26-117 (127)
42 cd08688 C2_KIAA0528-like C2 do 99.8 1.7E-19 3.7E-24 118.6 8.9 89 60-155 1-94 (110)
43 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 3.6E-19 7.8E-24 119.2 10.5 89 59-154 1-90 (123)
44 cd04019 C2C_MCTP_PRT_plant C2 99.8 5.2E-19 1.1E-23 122.4 10.9 89 60-154 2-91 (150)
45 cd08387 C2A_Synaptotagmin-8 C2 99.8 6.5E-19 1.4E-23 118.1 10.4 93 58-154 16-111 (124)
46 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.8 7.1E-19 1.5E-23 123.2 11.0 97 56-154 25-125 (162)
47 cd08521 C2A_SLP C2 domain firs 99.8 4.7E-19 1E-23 118.5 9.7 96 57-154 13-112 (123)
48 cd04042 C2A_MCTP_PRT C2 domain 99.8 6.2E-19 1.3E-23 117.8 10.2 89 59-154 1-90 (121)
49 cd08376 C2B_MCTP_PRT C2 domain 99.8 7.1E-19 1.5E-23 116.6 10.4 88 60-154 2-90 (116)
50 cd08404 C2B_Synaptotagmin-4 C2 99.8 4.3E-19 9.3E-24 120.9 8.8 94 57-152 14-110 (136)
51 cd08678 C2_C21orf25-like C2 do 99.8 1.4E-18 3E-23 116.9 10.9 88 60-154 1-88 (126)
52 cd08402 C2B_Synaptotagmin-1 C2 99.8 7.8E-19 1.7E-23 119.6 9.7 94 58-153 15-111 (136)
53 cd04037 C2E_Ferlin C2 domain f 99.8 2.1E-18 4.6E-23 115.8 11.5 90 60-154 2-92 (124)
54 cd04050 C2B_Synaptotagmin-like 99.8 7.6E-19 1.6E-23 114.6 9.0 85 60-154 2-87 (105)
55 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 2.7E-18 5.8E-23 116.4 12.0 93 60-154 2-96 (133)
56 cd04038 C2_ArfGAP C2 domain pr 99.8 2.4E-18 5.3E-23 118.3 11.7 89 58-154 2-90 (145)
57 cd08410 C2B_Synaptotagmin-17 C 99.8 1.3E-18 2.9E-23 118.4 9.4 93 58-152 14-109 (135)
58 cd08386 C2A_Synaptotagmin-7 C2 99.8 2.8E-18 6E-23 115.1 10.5 94 57-154 15-112 (125)
59 cd08405 C2B_Synaptotagmin-7 C2 99.8 1.5E-18 3.3E-23 118.1 9.3 95 57-153 14-111 (136)
60 cd08409 C2B_Synaptotagmin-15 C 99.8 1.6E-18 3.5E-23 118.2 9.4 92 58-151 15-108 (137)
61 cd08400 C2_Ras_p21A1 C2 domain 99.8 5E-18 1.1E-22 114.3 11.6 90 57-155 3-92 (126)
62 cd08389 C2A_Synaptotagmin-14_1 99.8 1.7E-18 3.7E-23 116.2 9.2 93 57-154 15-111 (124)
63 cd08378 C2B_MCTP_PRT_plant C2 99.8 1.7E-18 3.8E-23 115.7 9.1 84 60-154 2-85 (121)
64 cd04011 C2B_Ferlin C2 domain s 99.8 4.1E-18 8.9E-23 112.2 10.7 87 58-154 4-94 (111)
65 cd08390 C2A_Synaptotagmin-15-1 99.8 4E-18 8.7E-23 114.0 10.5 95 57-155 13-111 (123)
66 cd08403 C2B_Synaptotagmin-3-5- 99.8 2.4E-18 5.2E-23 116.9 9.1 94 57-152 13-109 (134)
67 cd04043 C2_Munc13_fungal C2 do 99.8 6.9E-18 1.5E-22 113.3 11.0 91 59-153 2-93 (126)
68 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 6.9E-18 1.5E-22 112.8 10.9 88 60-154 2-91 (121)
69 cd04051 C2_SRC2_like C2 domain 99.8 1.9E-18 4.2E-23 115.9 7.6 92 59-155 1-97 (125)
70 cd04035 C2A_Rabphilin_Doc2 C2 99.8 1.4E-17 3.1E-22 111.4 11.3 96 57-155 14-113 (123)
71 cd04026 C2_PKC_alpha_gamma C2 99.8 9.3E-18 2E-22 113.5 10.3 96 57-154 12-109 (131)
72 cd04024 C2A_Synaptotagmin-like 99.8 9.6E-18 2.1E-22 112.8 10.2 89 59-154 2-93 (128)
73 cd08382 C2_Smurf-like C2 domai 99.8 1.4E-17 3.1E-22 111.6 10.9 87 60-154 2-91 (123)
74 cd04048 C2A_Copine C2 domain f 99.8 5.4E-18 1.2E-22 113.1 8.8 90 64-154 6-101 (120)
75 cd04049 C2_putative_Elicitor-r 99.8 1.5E-17 3.2E-22 111.6 10.8 90 59-154 2-95 (124)
76 cd08394 C2A_Munc13 C2 domain f 99.8 1.9E-17 4.2E-22 110.5 10.9 86 58-155 2-87 (127)
77 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 2.4E-17 5.1E-22 110.2 10.9 88 60-154 2-90 (121)
78 cd08686 C2_ABR C2 domain in th 99.7 2.2E-17 4.8E-22 108.9 10.5 84 60-151 1-91 (118)
79 cd08377 C2C_MCTP_PRT C2 domain 99.7 2.5E-17 5.3E-22 109.5 10.7 88 59-154 2-90 (119)
80 cd04040 C2D_Tricalbin-like C2 99.7 2.4E-17 5.3E-22 109.0 10.5 89 60-154 1-90 (115)
81 cd04017 C2D_Ferlin C2 domain f 99.7 4.3E-17 9.2E-22 110.9 12.0 89 59-154 2-101 (135)
82 cd08391 C2A_C2C_Synaptotagmin_ 99.7 1.8E-17 3.8E-22 110.4 9.7 88 59-154 2-96 (121)
83 cd08675 C2B_RasGAP C2 domain s 99.7 2.5E-17 5.4E-22 112.4 10.5 92 60-154 1-107 (137)
84 KOG0696|consensus 99.7 1.2E-18 2.7E-23 135.1 4.5 96 57-154 179-276 (683)
85 cd00276 C2B_Synaptotagmin C2 d 99.7 1.7E-17 3.8E-22 112.3 9.3 93 58-152 14-109 (134)
86 cd04044 C2A_Tricalbin-like C2 99.7 3.8E-17 8.3E-22 109.2 10.8 91 58-154 2-94 (124)
87 cd04014 C2_PKC_epsilon C2 doma 99.7 4.5E-17 9.7E-22 110.4 11.1 90 58-155 4-104 (132)
88 cd04045 C2C_Tricalbin-like C2 99.7 4.1E-17 9E-22 108.9 10.2 89 59-154 2-91 (120)
89 cd04027 C2B_Munc13 C2 domain s 99.7 6.2E-17 1.3E-21 109.1 10.6 88 59-154 2-101 (127)
90 cd04046 C2_Calpain C2 domain p 99.7 1E-16 2.2E-21 107.8 11.4 88 58-154 3-91 (126)
91 cd04015 C2_plant_PLD C2 domain 99.7 1.1E-16 2.3E-21 111.7 11.5 89 58-154 7-126 (158)
92 cd08676 C2A_Munc13-like C2 dom 99.7 8.8E-17 1.9E-21 111.3 10.9 94 56-154 26-143 (153)
93 cd08373 C2A_Ferlin C2 domain f 99.7 8.5E-17 1.8E-21 108.3 10.3 83 64-154 2-86 (127)
94 cd08691 C2_NEDL1-like C2 domai 99.7 1.7E-16 3.6E-21 108.1 11.7 92 59-154 2-105 (137)
95 cd08690 C2_Freud-1 C2 domain f 99.7 3E-16 6.4E-21 108.7 11.7 93 60-154 4-108 (155)
96 cd04021 C2_E3_ubiquitin_ligase 99.7 4.4E-16 9.6E-21 104.6 11.0 88 59-154 3-90 (125)
97 cd04047 C2B_Copine C2 domain s 99.7 4E-16 8.7E-21 102.4 9.2 90 63-154 5-99 (110)
98 PF00168 C2: C2 domain; Inter 99.7 4.2E-16 9.1E-21 96.9 8.4 84 60-147 1-85 (85)
99 KOG1028|consensus 99.7 3.9E-16 8.5E-21 123.9 9.7 95 56-154 165-262 (421)
100 cd08374 C2F_Ferlin C2 domain s 99.6 4.6E-14 1E-18 95.3 10.1 93 60-156 2-124 (133)
101 cd04052 C2B_Tricalbin-like C2 99.5 3E-14 6.4E-19 93.8 7.8 72 75-153 10-81 (111)
102 smart00239 C2 Protein kinase C 99.5 2.1E-13 4.6E-18 86.6 11.0 91 60-154 2-93 (101)
103 PF00387 PI-PLC-Y: Phosphatidy 99.5 1.5E-15 3.2E-20 100.3 0.8 30 11-40 89-118 (118)
104 cd08383 C2A_RasGAP C2 domain ( 99.5 1.4E-13 3E-18 91.1 10.3 82 60-150 2-85 (117)
105 KOG1028|consensus 99.5 5.7E-14 1.2E-18 111.6 9.4 136 14-151 234-392 (421)
106 cd04013 C2_SynGAP_like C2 doma 99.5 2.2E-13 4.9E-18 93.5 10.0 89 55-154 8-100 (146)
107 PLN03008 Phospholipase D delta 99.5 1.6E-13 3.4E-18 114.7 10.2 72 76-155 75-146 (868)
108 KOG1011|consensus 99.5 4.2E-14 9.1E-19 114.5 5.6 91 56-154 293-395 (1283)
109 PLN03200 cellulose synthase-in 99.5 1.1E-13 2.3E-18 124.5 7.5 90 56-153 1978-2068(2102)
110 smart00149 PLCYc Phospholipase 99.5 1.6E-14 3.4E-19 94.8 1.6 29 11-39 87-115 (115)
111 cd00030 C2 C2 domain. The C2 d 99.4 2.7E-12 5.8E-17 81.1 9.7 89 60-154 1-90 (102)
112 COG5038 Ca2+-dependent lipid-b 99.3 2.7E-12 5.8E-17 109.4 7.2 93 57-155 1039-1132(1227)
113 KOG1328|consensus 99.2 4.5E-12 9.8E-17 103.8 1.8 96 57-153 946-1047(1103)
114 PLN02270 phospholipase D alpha 99.0 1.3E-09 2.9E-14 91.3 9.5 90 58-154 8-116 (808)
115 KOG1011|consensus 99.0 1.2E-09 2.6E-14 89.1 8.0 101 53-154 1120-1224(1283)
116 COG5038 Ca2+-dependent lipid-b 99.0 1.6E-09 3.5E-14 92.8 9.1 95 54-155 432-529 (1227)
117 cd08689 C2_fungal_Pkc1p C2 dom 99.0 2.2E-09 4.7E-14 69.1 6.6 82 60-153 1-86 (109)
118 KOG2059|consensus 98.9 1.4E-09 3.1E-14 89.0 5.6 88 58-153 5-93 (800)
119 KOG1031|consensus 98.8 9.9E-09 2.1E-13 83.1 5.1 90 57-153 2-96 (1169)
120 KOG0905|consensus 98.6 2.5E-08 5.4E-13 85.8 3.9 96 56-153 1522-1621(1639)
121 KOG1013|consensus 98.6 9.5E-08 2.1E-12 72.5 5.0 90 57-148 232-324 (362)
122 KOG1326|consensus 98.5 5.6E-08 1.2E-12 82.4 3.1 91 57-152 612-703 (1105)
123 KOG2059|consensus 98.5 9.6E-08 2.1E-12 78.6 3.7 86 66-154 139-240 (800)
124 cd08684 C2A_Tac2-N C2 domain f 98.3 1.1E-06 2.4E-11 54.7 4.1 87 62-154 3-93 (103)
125 KOG1328|consensus 98.3 1E-07 2.3E-12 78.8 -0.7 98 57-155 113-272 (1103)
126 cd08683 C2_C2cd3 C2 domain fou 98.2 4.4E-06 9.4E-11 55.7 5.5 92 60-154 1-131 (143)
127 PLN02352 phospholipase D epsil 98.2 8.5E-06 1.8E-10 68.7 8.4 83 58-154 10-98 (758)
128 PLN02964 phosphatidylserine de 98.0 1.3E-05 2.8E-10 66.9 6.1 85 57-153 53-137 (644)
129 KOG1013|consensus 98.0 6.1E-07 1.3E-11 68.2 -1.5 97 57-155 92-192 (362)
130 cd08693 C2_PI3K_class_I_beta_d 97.9 9.6E-05 2.1E-09 52.3 7.9 92 59-152 9-119 (173)
131 cd08380 C2_PI3K_like C2 domain 97.9 0.00013 2.8E-09 50.6 8.1 93 59-152 9-106 (156)
132 cd08398 C2_PI3K_class_I_alpha 97.8 0.00021 4.5E-09 49.8 8.5 90 59-152 9-105 (158)
133 KOG1327|consensus 97.7 8.1E-05 1.8E-09 60.4 6.1 89 65-154 143-235 (529)
134 KOG1326|consensus 97.6 1.5E-05 3.3E-10 68.1 -0.1 89 55-150 203-301 (1105)
135 cd08397 C2_PI3K_class_III C2 d 97.6 0.00056 1.2E-08 47.8 7.5 76 76-152 28-106 (159)
136 KOG2060|consensus 97.5 3E-05 6.4E-10 60.1 1.0 94 57-153 268-364 (405)
137 cd08399 C2_PI3K_class_I_gamma 97.3 0.0025 5.4E-08 45.3 8.7 92 59-152 11-121 (178)
138 cd04012 C2A_PI3K_class_II C2 d 97.3 0.0014 3E-08 46.3 7.4 95 58-152 8-118 (171)
139 PF00792 PI3K_C2: Phosphoinosi 97.0 0.0066 1.4E-07 41.4 7.9 55 98-152 23-84 (142)
140 KOG3837|consensus 96.8 0.00065 1.4E-08 53.6 1.8 99 53-153 362-473 (523)
141 cd08695 C2_Dock-B C2 domains f 96.7 0.063 1.4E-06 38.5 10.9 55 95-150 53-111 (189)
142 PF14429 DOCK-C2: C2 domain in 96.5 0.12 2.7E-06 36.7 11.9 56 96-152 60-120 (184)
143 cd08694 C2_Dock-A C2 domains f 96.2 0.16 3.5E-06 36.6 10.9 56 95-151 53-114 (196)
144 smart00142 PI3K_C2 Phosphoinos 96.1 0.039 8.5E-07 35.4 6.6 75 60-135 13-91 (100)
145 PF15627 CEP76-C2: CEP76 C2 do 95.8 0.071 1.5E-06 37.0 7.2 92 56-152 7-114 (156)
146 PF10358 NT-C2: N-terminal C2 95.0 0.66 1.4E-05 31.3 10.5 92 57-154 6-105 (143)
147 KOG1327|consensus 94.5 0.094 2E-06 43.1 5.5 57 96-153 42-102 (529)
148 KOG1452|consensus 93.9 0.15 3.3E-06 39.4 5.2 78 57-142 50-130 (442)
149 cd08679 C2_DOCK180_related C2 92.8 0.71 1.5E-05 32.7 7.0 55 97-152 54-115 (178)
150 cd08696 C2_Dock-C C2 domains f 92.3 0.97 2.1E-05 32.2 7.0 56 95-151 54-117 (179)
151 PF15625 CC2D2AN-C2: CC2D2A N- 91.5 2.7 5.9E-05 29.5 8.6 68 77-152 36-105 (168)
152 cd08697 C2_Dock-D C2 domains f 90.2 2.3 4.9E-05 30.5 7.2 57 95-152 56-123 (185)
153 PF12416 DUF3668: Cep120 prote 86.0 4.6 9.9E-05 31.8 7.1 85 60-153 2-94 (340)
154 KOG0904|consensus 85.7 2.5 5.4E-05 37.2 5.9 75 58-133 343-420 (1076)
155 cd08687 C2_PKN-like C2 domain 79.1 11 0.00024 23.9 5.6 41 107-152 31-71 (98)
156 KOG0906|consensus 77.9 3.4 7.5E-05 35.2 3.9 75 76-151 45-122 (843)
157 PF11618 DUF3250: Protein of u 71.1 9.1 0.0002 24.8 3.9 55 96-153 12-73 (107)
158 PF07162 B9-C2: Ciliary basal 58.2 61 0.0013 22.6 11.5 85 60-149 4-100 (168)
159 PF14186 Aida_C2: Cytoskeletal 56.5 53 0.0012 22.6 5.7 96 58-155 13-114 (147)
160 PF01060 DUF290: Transthyretin 48.9 50 0.0011 19.9 4.2 24 125-148 12-35 (80)
161 KOG1329|consensus 43.5 18 0.00038 32.1 2.1 70 78-153 138-207 (887)
162 KOG4027|consensus 41.2 1.2E+02 0.0026 21.3 5.5 42 109-150 64-108 (187)
163 KOG0694|consensus 41.2 3.7 8.1E-05 35.0 -2.2 52 76-135 26-77 (694)
164 PF14909 SPATA6: Spermatogenes 36.8 1.4E+02 0.003 20.5 9.5 70 77-154 19-100 (140)
165 KOG4028|consensus 29.1 1.1E+02 0.0024 20.8 3.6 20 126-145 75-94 (175)
166 PF10008 DUF2251: Uncharacteri 28.4 27 0.00059 22.2 0.7 17 18-34 10-26 (97)
167 cd08904 START_STARD6-like Lipi 26.6 28 0.00062 25.2 0.6 20 18-37 138-158 (204)
168 PF04181 RPAP2_Rtr1: Rtr1/RPAP 24.7 24 0.00052 21.3 -0.1 12 27-38 20-31 (79)
169 KOG0905|consensus 24.4 1.3E+02 0.0029 28.2 4.3 98 57-154 634-750 (1639)
170 PF00072 Response_reg: Respons 24.1 38 0.00082 20.8 0.8 13 26-38 91-103 (112)
171 cd08902 START_STARD4-like Lipi 23.9 37 0.00081 24.7 0.8 12 26-37 145-156 (202)
172 KOG4269|consensus 23.7 53 0.0012 29.5 1.8 58 57-120 758-815 (1112)
No 1
>PLN02223 phosphoinositide phospholipase C
Probab=100.00 E-value=7.1e-45 Score=288.65 Aligned_cols=147 Identities=24% Similarity=0.462 Sum_probs=129.2
Q ss_pred ceeeeecCcccCChhhhccccccccCCceeEEecCCcccCC----CCCCCCCCCCCceeeEEEEEEEeeeeecccC----
Q psy12820 2 LREFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSE----SYDPYDPTSLVGVTRVKVLLRVLAARHLTRS---- 73 (156)
Q Consensus 2 ~~~valN~q~t~d~~m~~n~~~F~~ng~~GyvlKP~~l~~~----~~~p~~~~~~~~~~~~~L~v~v~~a~~L~~~---- 73 (156)
-|||||||| |.|.+||||+|||+.||+|||||||++||+. .|+|... ...+..|+|+|++|++++..
T Consensus 354 cQmVALN~Q-T~d~~M~LN~G~F~~NG~CGYVLKP~~Lr~~~~~~~FdP~~~----~~~~~~L~V~Visgq~~~~~~~k~ 428 (537)
T PLN02223 354 AQLIALSRK-DDKEKLWLMQGMFRANGGCGYVKKPDFLLNAGPSGVFYPTEN----PVVVKILKVKIYMGDGWIVDFKKR 428 (537)
T ss_pred eeEeeeccC-CCChhHHhhcchhccCCCCCceECChhhccCCcccccCCCCC----cccceEEEEEEEEcccccCCcccc
Confidence 499999999 9999999999999999999999999999985 4777532 23467899999999987521
Q ss_pred -C-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEECC
Q psy12820 74 -G-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVY 151 (156)
Q Consensus 74 -~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~ 151 (156)
+ .+..||||+|++.|.+.|.. +++|+ +.+||+||+|||+|.|.+..|+++.|+|.|+|+|..+.++|+|++++|+.
T Consensus 429 ~~~~s~~DpyV~VeI~Gvp~D~~-~~kT~-v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~ 506 (537)
T PLN02223 429 IGRLSKPDLYVRISIAGVPHDEK-IMKTT-VKNNEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVS 506 (537)
T ss_pred cCCCCCCCeEEEEEEeeccCCcc-eeEEE-eCCCCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchH
Confidence 1 35679999999999998887 77786 66778999999999999999999999999999998888999999999999
Q ss_pred CCCC
Q psy12820 152 TNRF 155 (156)
Q Consensus 152 ~l~~ 155 (156)
+||+
T Consensus 507 ~Lr~ 510 (537)
T PLN02223 507 ELIE 510 (537)
T ss_pred HhcC
Confidence 9986
No 2
>KOG0169|consensus
Probab=100.00 E-value=1e-44 Score=292.90 Aligned_cols=149 Identities=36% Similarity=0.685 Sum_probs=134.4
Q ss_pred ceeeeecCcccCChhhhccccccccCCceeEEecCCcccCC--CCCCCCCCCCCceeeEEEEEEEeeeeecccC-C----
Q psy12820 2 LREFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSE--SYDPYDPTSLVGVTRVKVLLRVLAARHLTRS-G---- 74 (156)
Q Consensus 2 ~~~valN~q~t~d~~m~~n~~~F~~ng~~GyvlKP~~l~~~--~~~p~~~~~~~~~~~~~L~v~v~~a~~L~~~-~---- 74 (156)
.|||||||| |+++.||||+|||+.||+|||||||.+||++ .|+|.. .++...+ +|.|+|++|++++.. .
T Consensus 562 ~QmVAlN~Q-t~G~~l~L~~G~Fr~NGgCGYVlKP~~L~~~~~~F~P~~--~~~~~~~-tL~IkI~sGq~~~~~~~~~~~ 637 (746)
T KOG0169|consen 562 CQMVALNFQ-TPGRMLDLNQGMFRANGGCGYVLKPDFLLDSGSTFDPKS--NLPPVKK-TLKIKIISGQGWLPDFGKTKF 637 (746)
T ss_pred ceEEEEecC-CCChhhhhhhhhhccCCCccceECcHHHcCCCCccCCCC--CCCCCCc-eeEEEEEecCcccCCCCCCcc
Confidence 499999999 9999999999999999999999999999994 588832 2344445 899999999976553 2
Q ss_pred CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEECCCCC
Q psy12820 75 RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 75 ~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~ 154 (156)
...+||||.|++.|.+.|.. +.+|+++++||+||.|+|+|+|++..||++.|+|.|+|+|..++|||+||+++|+.+|+
T Consensus 638 ~~~~dP~v~VeI~Gvp~D~~-~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~ 716 (746)
T KOG0169|consen 638 GEISDPDVYVEIAGVPADCA-EQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELR 716 (746)
T ss_pred cccCCCCEEEEEcccccchh-hhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhh
Confidence 35789999999999999998 99999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy12820 155 F 155 (156)
Q Consensus 155 ~ 155 (156)
+
T Consensus 717 ~ 717 (746)
T KOG0169|consen 717 Q 717 (746)
T ss_pred C
Confidence 6
No 3
>PLN02230 phosphoinositide phospholipase C 4
Probab=100.00 E-value=2.5e-44 Score=289.92 Aligned_cols=147 Identities=28% Similarity=0.473 Sum_probs=128.6
Q ss_pred ceeeeecCcccCChhhhccccccccCCceeEEecCCcccCC-----CCCCCCCCCCCceeeEEEEEEEeeeeecccC---
Q psy12820 2 LREFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSE-----SYDPYDPTSLVGVTRVKVLLRVLAARHLTRS--- 73 (156)
Q Consensus 2 ~~~valN~q~t~d~~m~~n~~~F~~ng~~GyvlKP~~l~~~-----~~~p~~~~~~~~~~~~~L~v~v~~a~~L~~~--- 73 (156)
.|||||||| |+|++||||+|||+.||+|||||||++||.. .|+|.... ..+.+|+|+|++|++++..
T Consensus 413 cQMVALN~Q-t~d~~M~LN~G~F~~NG~CGYVLKP~~Lr~~~~~~~~fdP~~~~----~~~~~L~V~VisGq~~~l~~~k 487 (598)
T PLN02230 413 AQMIAFNMQ-GYGRALWLMEGMFRANGGCGYVKKPDFLMDAGPNGQDFYPKDNS----CPKKTLKVKVCMGDGWLLDFKK 487 (598)
T ss_pred eEEeeeccc-CCChHHHhhcchhccCCCCCceECCHHhcCCCccccccCCCcCC----CcCcEEEEEEEEccCccCCCcc
Confidence 499999999 9999999999999999999999999999984 47776532 2356899999999987522
Q ss_pred -C---CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEE
Q psy12820 74 -G---RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYP 149 (156)
Q Consensus 74 -~---~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~ 149 (156)
. .+..||||+|.+.|.+.|.. +++|++.. ||+||+|||+|.|++..||++.|+|.|+|+|..+.++|+||+++|
T Consensus 488 ~~~~~~s~~DpyV~Vei~Gvp~D~~-~~kT~v~~-n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lP 565 (598)
T PLN02230 488 THFDSYSPPDFFVRVGIAGAPVDEV-MEKTKIEY-DTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLP 565 (598)
T ss_pred ccCCCCCCCCceEEEEEEECCCCCc-ccceeccC-CCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcc
Confidence 1 34579999999999988887 78898654 569999999999999999999999999999988889999999999
Q ss_pred CCCCCC
Q psy12820 150 VYTNRF 155 (156)
Q Consensus 150 l~~l~~ 155 (156)
+.+||+
T Consensus 566 v~~Lr~ 571 (598)
T PLN02230 566 VSEIRQ 571 (598)
T ss_pred hHHhhC
Confidence 999986
No 4
>PLN02222 phosphoinositide phospholipase C 2
Probab=100.00 E-value=6.1e-44 Score=287.25 Aligned_cols=147 Identities=27% Similarity=0.484 Sum_probs=129.5
Q ss_pred ceeeeecCcccCChhhhccccccccCCceeEEecCCcccCC-----CCCCCCCCCCCceeeEEEEEEEeeeeecc--cC-
Q psy12820 2 LREFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSE-----SYDPYDPTSLVGVTRVKVLLRVLAARHLT--RS- 73 (156)
Q Consensus 2 ~~~valN~q~t~d~~m~~n~~~F~~ng~~GyvlKP~~l~~~-----~~~p~~~~~~~~~~~~~L~v~v~~a~~L~--~~- 73 (156)
.|||||||| |.|.+||||+|||+.||+|||||||++||+. .|+|.... ....+|+|+|++|++++ ..
T Consensus 396 ~QmVALN~Q-T~d~~M~LN~G~F~~NG~cGYVLKP~~lr~~~~~~~~fdp~~~~----~~~~~L~V~Visgq~~~l~~~~ 470 (581)
T PLN02222 396 AQMVAFNMQ-GYGRSLWLMQGMFRANGGCGYIKKPDLLLKSGSDSDIFDPKATL----PVKTTLRVTIYMGEGWYFDFRH 470 (581)
T ss_pred cEEeecccc-CCChhhhhhcchhccCCCCceEECCHHhccCCccccccCCCCCC----CccceEEEEEEEcccccCCCCc
Confidence 499999999 9999999999999999999999999999975 46776532 23467999999999753 21
Q ss_pred -C---CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEE
Q psy12820 74 -G---RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYP 149 (156)
Q Consensus 74 -~---~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~ 149 (156)
. ....||||+|.+.|.+.|.. +++|+++.+| +||+|||+|.|.+..|+++.|+|.|+|+|..+.++|+|++++|
T Consensus 471 ~~~~~~~~~dpyV~Vei~G~p~D~~-~~rTk~v~nn-~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lP 548 (581)
T PLN02222 471 THFDQYSPPDFYTRVGIAGVPGDTV-MKKTKTLEDN-WIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLP 548 (581)
T ss_pred cccCCCCCCCeeEEEEEeccCCCcc-eeeeEecCCC-CCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcc
Confidence 1 34679999999999988887 8899999998 8999999999999999999999999999988889999999999
Q ss_pred CCCCCC
Q psy12820 150 VYTNRF 155 (156)
Q Consensus 150 l~~l~~ 155 (156)
+.+||+
T Consensus 549 v~~Lr~ 554 (581)
T PLN02222 549 VWELSQ 554 (581)
T ss_pred hhhhhC
Confidence 999986
No 5
>KOG1264|consensus
Probab=100.00 E-value=8.6e-44 Score=287.86 Aligned_cols=151 Identities=49% Similarity=0.861 Sum_probs=144.4
Q ss_pred eeeeecCcccCChhhhccccccccCCceeEEecCCcccCCCCCCCCCCCCCceeeEEEEEEEeeeeecccCCCCCCCCEE
Q psy12820 3 REFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFV 82 (156)
Q Consensus 3 ~~valN~q~t~d~~m~~n~~~F~~ng~~GyvlKP~~l~~~~~~p~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~dpyv 82 (156)
|||||||| |.|++||+|+|+|..||+|||||||.+||...|||..++...+..+.+|.|+|+.|++|++.+.+...|||
T Consensus 1011 qmVALN~Q-TgDKpMQmNqa~F~~ngrcGYvLqPs~Mrte~fdP~n~e~~~~l~p~~lsv~vigaRHL~k~gr~i~cPfV 1089 (1267)
T KOG1264|consen 1011 QMVALNFQ-TGDKPMQMNQALFSLNGRCGYVLQPSSMRTEKFDPMNPESQRGLLPMTLSVKVLGARHLPKLGRSIACPFV 1089 (1267)
T ss_pred eeEEeecc-CCCchhhhhHHHhhcCCceeeEecchhcccccCCCCChHHhccccceEEEEEEeeccccccCCCCccCCcE
Confidence 89999999 99999999999999999999999999999999999998778888899999999999999988888889999
Q ss_pred EEEEecCCCCCCceEEeEEecCCCCCCeeC-ceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEECCCCCC
Q psy12820 83 EVEVLGADYDTGLKLTTKTVSDNGFNPTWN-ESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNRF 155 (156)
Q Consensus 83 ~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~-e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~ 155 (156)
+|++.|.+.|.. +++|+++..||+||+|| |+|+|.|.+|+.++|+|.|+|.|.++...|||++++|+..|++
T Consensus 1090 evEiiGa~~Dt~-~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1090 EVEIIGAEYDTN-KFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKS 1162 (1267)
T ss_pred EEEEeccccCCC-ceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhc
Confidence 999999999988 88888888899999999 9999999999999999999999999999999999999998875
No 6
>PLN02952 phosphoinositide phospholipase C
Probab=100.00 E-value=9.5e-43 Score=281.19 Aligned_cols=147 Identities=30% Similarity=0.525 Sum_probs=129.6
Q ss_pred ceeeeecCcccCChhhhccccccccCCceeEEecCCcccCC-----CCCCCCCCCCCceeeEEEEEEEeeeeecccCC--
Q psy12820 2 LREFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSE-----SYDPYDPTSLVGVTRVKVLLRVLAARHLTRSG-- 74 (156)
Q Consensus 2 ~~~valN~q~t~d~~m~~n~~~F~~ng~~GyvlKP~~l~~~-----~~~p~~~~~~~~~~~~~L~v~v~~a~~L~~~~-- 74 (156)
.|||||||| |.|++||||+|||+.||+|||||||++||.. .|+|.... ..+..|+|+|++|++++...
T Consensus 414 ~QmVAlN~Q-t~d~~m~lN~g~F~~NG~cGYVlKP~~lr~~~~~~~~fdp~~~~----~~~~~L~V~VisGq~l~lp~~~ 488 (599)
T PLN02952 414 AQMIAFNMQ-GYGKSLWLMHGMFRANGGCGYLKKPDFLMKKGFHDEVFDPKKKL----PVKKTLKVKVYLGDGWRLDFSH 488 (599)
T ss_pred cEEeeeccc-CCChHHHhhhchhccCCCCCceECCHHHcccCCcccccCCCCCC----CccceEEEEEEECcccCCCCcc
Confidence 499999999 9999999999999999999999999999864 46775431 23468999999999875321
Q ss_pred -----CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEE
Q psy12820 75 -----RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYP 149 (156)
Q Consensus 75 -----~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~ 149 (156)
....||||+|.+.|.+.|.. +++|+++.+| +||+|||+|.|.+..|+++.++|.|+|+|..+.++|+|++++|
T Consensus 489 ~~~~~~~~~D~yV~V~i~G~p~D~~-~~kTkvi~nN-~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lP 566 (599)
T PLN02952 489 THFDSYSPPDFYTKMYIVGVPADNA-KKKTKIIEDN-WYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLP 566 (599)
T ss_pred ccCCccCCCCceEEEEEeccCCCCc-ceeeeeccCC-CCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcc
Confidence 23459999999999988887 8899999998 9999999999999999999999999999988889999999999
Q ss_pred CCCCCC
Q psy12820 150 VYTNRF 155 (156)
Q Consensus 150 l~~l~~ 155 (156)
+++|++
T Consensus 567 v~~Lr~ 572 (599)
T PLN02952 567 VSELRP 572 (599)
T ss_pred hhHhcC
Confidence 999986
No 7
>PLN02228 Phosphoinositide phospholipase C
Probab=100.00 E-value=4.1e-42 Score=276.05 Aligned_cols=147 Identities=27% Similarity=0.485 Sum_probs=128.9
Q ss_pred ceeeeecCcccCChhhhccccccccCCceeEEecCCcccCC--CCCCCCCCCCCceeeEEEEEEEeeeeeccc----CC-
Q psy12820 2 LREFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSE--SYDPYDPTSLVGVTRVKVLLRVLAARHLTR----SG- 74 (156)
Q Consensus 2 ~~~valN~q~t~d~~m~~n~~~F~~ng~~GyvlKP~~l~~~--~~~p~~~~~~~~~~~~~L~v~v~~a~~L~~----~~- 74 (156)
.|||||||| |.|.+||||+|||+.||+|||||||++||.. .|+|.... ..+..|+|+|++|++|+. ..
T Consensus 378 ~QmVALN~Q-T~d~~M~lN~g~F~~NG~cGYVLKP~~Lr~~~~~f~p~~~~----p~~~~L~I~ViSGq~l~lp~~~~~~ 452 (567)
T PLN02228 378 AQMVAFNMQ-GHGKQLWIMQGMFRANGGCGYVKKPRILLDEHTLFDPCKRL----PIKTTLKVKIYTGEGWDLDFHLTHF 452 (567)
T ss_pred cEEeeeccc-CCChHHHhhcCchhhCCCCCceeCchhhcccccccCCccCC----CcCceEEEEEEECCccCCCCCCCCC
Confidence 499999999 9999999999999999999999999999985 47776432 124589999999998732 11
Q ss_pred --CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCee-CceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEECC
Q psy12820 75 --RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTW-NESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVY 151 (156)
Q Consensus 75 --~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w-~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~ 151 (156)
....||||+|++.|.+.|.. +++|+++.++ +||+| +|+|.|.+..|+++.|+|.|+|+|..+.++|+|++++|++
T Consensus 453 ~~~~~~DpyV~Vei~G~p~D~~-~~rTk~~~n~-~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~ 530 (567)
T PLN02228 453 DQYSPPDFFVKIGIAGVPRDTV-SYRTETAVDQ-WFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLP 530 (567)
T ss_pred CCCCCCCcEEEEEEEecCCCCC-cceeeccCCC-CCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchh
Confidence 23579999999999988887 8899998776 99999 9999999999999999999999998888999999999999
Q ss_pred CCCC
Q psy12820 152 TNRF 155 (156)
Q Consensus 152 ~l~~ 155 (156)
+||+
T Consensus 531 ~Lr~ 534 (567)
T PLN02228 531 ELKS 534 (567)
T ss_pred HhhC
Confidence 9986
No 8
>KOG1265|consensus
Probab=100.00 E-value=9.4e-37 Score=248.62 Aligned_cols=145 Identities=35% Similarity=0.577 Sum_probs=133.2
Q ss_pred eeeeecCcccCChhhhccccccccCCceeEEecCCcccCC--CCCCCCCCCCCceeeEEEEEEEeeeeecccCCCCCCCC
Q psy12820 3 REFTYNRQSVINKAMQVNHAKFRMNGGCGYLLRPAFMFSE--SYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSP 80 (156)
Q Consensus 3 ~~valN~q~t~d~~m~~n~~~F~~ng~~GyvlKP~~l~~~--~~~p~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~dp 80 (156)
|||||||| |.|.+||||.|||+.||+|||+|||++||.+ .|||+..+.++++.+.++.|+||+|+-|.... ...
T Consensus 647 QmVsLNfQ-T~dlaMQlN~g~FEyNG~sGYllKPdfmRrpDr~fdPFse~~VdgvIA~t~sV~VISgqFLSdrk---vgt 722 (1189)
T KOG1265|consen 647 QMVSLNFQ-TPDLAMQLNMGMFEYNGGSGYLLKPDFMRRPDRQFDPFSESPVDGVIAATLSVTVISGQFLSDRK---VGT 722 (1189)
T ss_pred eEEEeecc-CccHHHHhhhhheeecCCccceeChHHhhCCCcCcCCcccCcccceEEeeEEEEEEeeeeccccc---cCc
Confidence 89999999 9999999999999999999999999999987 69999998899999999999999999998665 348
Q ss_pred EEEEEEecCCCCCC-ceEEeEEecCCCCCCeeCce-EEEE-EeCCCccEEEEEEEecCCCCCCceEEEEEEECCCCCC
Q psy12820 81 FVEVEVLGADYDTG-LKLTTKTVSDNGFNPTWNES-CEFT-VHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNRF 155 (156)
Q Consensus 81 yv~v~l~~~~~~~~-~~~kT~~~~~~~~nP~w~e~-f~f~-v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~ 155 (156)
||+|.+.|.+.|.. +++||+++..||+||+|+|. |.|. |-.|+++.|+|.||++. ..+||+-.+|++.|+.
T Consensus 723 yVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg----gK~ig~RIlpvd~l~~ 796 (1189)
T KOG1265|consen 723 YVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG----GKFIGQRILPVDGLNA 796 (1189)
T ss_pred eEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC----CceeeeeccchhcccC
Confidence 99999999988865 57899999999999999965 9998 88999999999999985 5799999999998864
No 9
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.91 E-value=1.3e-23 Score=139.99 Aligned_cols=96 Identities=28% Similarity=0.425 Sum_probs=80.2
Q ss_pred EEEEEEeeeeecccCCCCCCCCEEEEEEecCCC-CCCceEEeEEecCCCCCCeeCceEEEEEeCC---CccEEEEEEEec
Q psy12820 59 KVLLRVLAARHLTRSGRCTTSPFVEVEVLGADY-DTGLKLTTKTVSDNGFNPTWNESCEFTVHNP---EMALLRFVCQDE 134 (156)
Q Consensus 59 ~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~-~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~---~~~~l~~~V~d~ 134 (156)
+|+|+|++|++|+..+.|.+||||+|++.|... ++.++++|+++.++ +||+|||+|.|.+... +.+.|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~t-lnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNN-WSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCC-CCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 489999999999887778899999999976322 23336789998776 9999999999999743 335899999999
Q ss_pred CCCCCCceEEEEEEECCCCCC
Q psy12820 135 DMFGDSNFIGQATYPVYTNRF 155 (156)
Q Consensus 135 ~~~~~~~~iG~~~i~l~~l~~ 155 (156)
+..+++++||++.+|++++..
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~ 100 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQ 100 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcC
Confidence 988889999999999988764
No 10
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.89 E-value=4.7e-23 Score=136.09 Aligned_cols=92 Identities=13% Similarity=0.191 Sum_probs=78.8
Q ss_pred eEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc--EEEEEEEec
Q psy12820 57 RVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDE 134 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~--~l~~~V~d~ 134 (156)
..+|+|+|++|++|+ . .+.+||||++++... ++..+++|++.+++ +||+|||+|.|.+...++. .|.|+|||+
T Consensus 13 ~~~L~V~vikA~~L~-~-~g~sDPYVKv~L~~~--~k~~k~kT~v~rkt-lnPvfnE~f~F~v~~~~l~~~tL~~~V~d~ 87 (118)
T cd08677 13 KAELHVNILEAENIS-V-DAGCECYISGCVSVS--EGQKEAQTALKKLA-LHTQWEEELVFPLPEEESLDGTLTLTLRCC 87 (118)
T ss_pred CCEEEEEEEEecCCC-C-CCCCCeEEEEEEcCC--cCccEEEcceecCC-CCCccccEEEEeCCHHHhCCcEEEEEEEeC
Confidence 458999999999998 3 355899999998643 23347899999998 9999999999998865553 899999999
Q ss_pred CCCCCCceEEEEEEECCCC
Q psy12820 135 DMFGDSNFIGQATYPVYTN 153 (156)
Q Consensus 135 ~~~~~~~~iG~~~i~l~~l 153 (156)
|.++++++||++.++++++
T Consensus 88 Drfs~~d~IG~v~l~l~~~ 106 (118)
T cd08677 88 DRFSRHSTLGELRLKLADV 106 (118)
T ss_pred CCCCCCceEEEEEEccccc
Confidence 9999999999999999875
No 11
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.88 E-value=7.1e-22 Score=132.33 Aligned_cols=96 Identities=22% Similarity=0.293 Sum_probs=81.8
Q ss_pred eEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEE-eC--CCccEEEEEEEe
Q psy12820 57 RVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTV-HN--PEMALLRFVCQD 133 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v-~~--~~~~~l~~~V~d 133 (156)
..+|.|+|++|++|+..+.+.+||||++.+.+.+.+.. ++||++++++ .||+|||+|.|.+ .. .....|.|+|||
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~-~~kT~v~~~~-~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d 89 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTT-KRKTKVVRKT-RNPTFNEMLVYDGLPVEDLQQRVLQVSVWS 89 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCC-ceeCCccCCC-CCCCcccEEEEecCChHHhCCCEEEEEEEe
Confidence 45799999999999987777899999999976543334 7899999998 9999999999987 32 234589999999
Q ss_pred cCCCCCCceEEEEEEECCCCC
Q psy12820 134 EDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 134 ~~~~~~~~~iG~~~i~l~~l~ 154 (156)
++..+++++||++.++|+++.
T Consensus 90 ~d~~~~~~~lG~~~i~l~~l~ 110 (122)
T cd08381 90 HDSLVENEFLGGVCIPLKKLD 110 (122)
T ss_pred CCCCcCCcEEEEEEEeccccc
Confidence 999999999999999999875
No 12
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.86 E-value=5.1e-21 Score=128.70 Aligned_cols=97 Identities=21% Similarity=0.394 Sum_probs=80.9
Q ss_pred eEEEEEEEeeeeecccCC--CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEE
Q psy12820 57 RVKVLLRVLAARHLTRSG--RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQ 132 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~--~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~ 132 (156)
..+|.|+|++|++|+..+ .+.+||||++++...+. ...++||++++++ .||+|||+|.|.+...++ ..|.|.||
T Consensus 14 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~-~~~~~kT~v~~~t-~nP~wnE~f~f~i~~~~l~~~~L~~~V~ 91 (125)
T cd04029 14 TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKS-RQSKRKTSIKRNT-TNPVYNETLKYSISHSQLETRTLQLSVW 91 (125)
T ss_pred CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCc-cccceEeeeeeCC-CCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 357999999999998764 47899999999864322 2237899999888 999999999999875443 47999999
Q ss_pred ecCCCCCCceEEEEEEECCCCCC
Q psy12820 133 DEDMFGDSNFIGQATYPVYTNRF 155 (156)
Q Consensus 133 d~~~~~~~~~iG~~~i~l~~l~~ 155 (156)
|++..+++++||++.++++++..
T Consensus 92 d~~~~~~~~~lG~~~i~l~~~~~ 114 (125)
T cd04029 92 HYDRFGRNTFLGEVEIPLDSWNF 114 (125)
T ss_pred ECCCCCCCcEEEEEEEeCCcccc
Confidence 99999999999999999998753
No 13
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.86 E-value=4.3e-21 Score=129.46 Aligned_cols=96 Identities=19% Similarity=0.288 Sum_probs=81.8
Q ss_pred eEEEEEEEeeeeecccCC--CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEE
Q psy12820 57 RVKVLLRVLAARHLTRSG--RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQ 132 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~--~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~ 132 (156)
..+|.|+|++|++|+..+ .+.+||||++++........ ++||++++++ .||+|||+|.|.+...++ ..|.+.||
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~-k~kT~v~~~t-~nPvfNE~F~f~v~~~~l~~~~L~v~V~ 91 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNS-KRKTAVKKGT-VNPVFNETLKYVVEADLLSSRQLQVSVW 91 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccc-eeecccccCC-CCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence 358999999999998875 37899999999975433333 7899999998 999999999999876544 48999999
Q ss_pred ecCCCCCCceEEEEEEECCCCC
Q psy12820 133 DEDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 133 d~~~~~~~~~iG~~~i~l~~l~ 154 (156)
|++..+++++||++.|+|+++.
T Consensus 92 ~~~~~~~~~~lG~~~i~L~~~~ 113 (128)
T cd08392 92 HSRTLKRRVFLGEVLIPLADWD 113 (128)
T ss_pred eCCCCcCcceEEEEEEEcCCcc
Confidence 9999889999999999998874
No 14
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.86 E-value=3.8e-21 Score=129.29 Aligned_cols=95 Identities=20% Similarity=0.407 Sum_probs=80.9
Q ss_pred EEEEEEEeeeeecccCC-C-CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEe
Q psy12820 58 VKVLLRVLAARHLTRSG-R-CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQD 133 (156)
Q Consensus 58 ~~L~v~v~~a~~L~~~~-~-~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d 133 (156)
..|.|+|++|++|+..+ . +.+||||++.+.+...... ++||++++++ .||+|||+|.|.+...++ ..|.|+|||
T Consensus 15 ~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~-~~kT~v~~~t-~nP~~nE~f~f~v~~~~l~~~~L~~~V~d 92 (125)
T cd08393 15 RELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRG-KRKTSVKKKT-LNPVFNETLRYKVEREELPTRVLNLSVWH 92 (125)
T ss_pred CEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccc-cccCccCcCC-CCCccCceEEEECCHHHhCCCEEEEEEEe
Confidence 47999999999999876 3 6899999999975433233 6899999998 999999999999875433 489999999
Q ss_pred cCCCCCCceEEEEEEECCCCC
Q psy12820 134 EDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 134 ~~~~~~~~~iG~~~i~l~~l~ 154 (156)
++..+++++||++.++|+++.
T Consensus 93 ~~~~~~~~~iG~~~i~L~~~~ 113 (125)
T cd08393 93 RDSLGRNSFLGEVEVDLGSWD 113 (125)
T ss_pred CCCCCCCcEeEEEEEecCccc
Confidence 999999999999999999864
No 15
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.85 E-value=1.5e-20 Score=129.14 Aligned_cols=95 Identities=21% Similarity=0.305 Sum_probs=80.1
Q ss_pred eEEEEEEEeeeeecccCC--CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEE-e
Q psy12820 57 RVKVLLRVLAARHLTRSG--RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQ-D 133 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~--~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~-d 133 (156)
...|.|+|++|++|+..+ .+.+||||++++....... .++||++++++ +||+|||+|.|.+. .....|.|+|| |
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~-~k~KT~v~kkt-lnPvfNE~F~f~v~-l~~~~L~v~V~~d 104 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCI-AKKKTKIARKT-LDPLYQQQLVFDVS-PTGKTLQVIVWGD 104 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccc-cceeceecCCC-CCCccCCeEEEEEc-CCCCEEEEEEEeC
Confidence 357999999999998753 5689999999997543222 38899999998 99999999999998 45568999999 6
Q ss_pred cCCCCCCceEEEEEEECCCCC
Q psy12820 134 EDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 134 ~~~~~~~~~iG~~~i~l~~l~ 154 (156)
++..+++++||++.|+|+++.
T Consensus 105 ~~~~~~~~~iG~~~i~L~~l~ 125 (146)
T cd04028 105 YGRMDKKVFMGVAQILLDDLD 125 (146)
T ss_pred CCCCCCCceEEEEEEEccccc
Confidence 788888999999999999874
No 16
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.85 E-value=6.5e-21 Score=127.83 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=81.9
Q ss_pred eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc--EEEEEEEe
Q psy12820 57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQD 133 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~--~l~~~V~d 133 (156)
..+|.|+|++|++|+..+ .+.+||||++++.........++||++++++ .||+|||+|.|++...++. .|.|+||+
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t-~nPvfnE~F~f~v~~~~L~~~~L~~~V~~ 91 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQ-DKPVFNEVFRVPISSTKLYQKTLQVDVCS 91 (124)
T ss_pred CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCC-CCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence 357999999999998865 5678999999998643322237899999988 9999999999998765554 89999999
Q ss_pred cCCCCCCceEEEEEEECCCCC
Q psy12820 134 EDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 134 ~~~~~~~~~iG~~~i~l~~l~ 154 (156)
++..+++++||++.++++++.
T Consensus 92 ~~~~~~~~~lG~~~i~L~~~~ 112 (124)
T cd08680 92 VGPDQQEECLGGAQISLADFE 112 (124)
T ss_pred CCCCCceeEEEEEEEEhhhcc
Confidence 999999999999999998873
No 17
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.85 E-value=1.1e-20 Score=127.51 Aligned_cols=95 Identities=22% Similarity=0.254 Sum_probs=79.9
Q ss_pred eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc-EEEEEEEec
Q psy12820 57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA-LLRFVCQDE 134 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~-~l~~~V~d~ 134 (156)
+.+|+|+|++|++|++.. .+..||||+|++.+.+.+.. ++||++++++..+|+|||+|.|++..++.. .|.++|||+
T Consensus 13 ~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~-KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~ 91 (135)
T cd08692 13 NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLY-KKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR 91 (135)
T ss_pred CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcce-eecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence 457999999999999863 55679999999997655444 889999998844699999999999865544 777899999
Q ss_pred CCCCCCceEEEEEEECCC
Q psy12820 135 DMFGDSNFIGQATYPVYT 152 (156)
Q Consensus 135 ~~~~~~~~iG~~~i~l~~ 152 (156)
+..+++++||++.++.++
T Consensus 92 ~~~~~n~~IG~v~lG~~~ 109 (135)
T cd08692 92 SSVRRKHFLGQVWISSDS 109 (135)
T ss_pred CCCcCCceEEEEEECCcc
Confidence 988899999999999865
No 18
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.85 E-value=2.6e-20 Score=124.30 Aligned_cols=87 Identities=18% Similarity=0.269 Sum_probs=75.8
Q ss_pred EEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820 58 VKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF 137 (156)
Q Consensus 58 ~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~ 137 (156)
..|.|+|++|++++..+.+.+||||++.+. .. +.||+++.+++.||+|||+|.|.+... ...|.|+|||+|.+
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg-----~~-~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~ 74 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVG-----HA-VYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAF 74 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEEC-----CE-EEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCC
Confidence 479999999998877667899999999983 23 779999987669999999999998754 35799999999999
Q ss_pred CCCceEEEEEEECC
Q psy12820 138 GDSNFIGQATYPVY 151 (156)
Q Consensus 138 ~~~~~iG~~~i~l~ 151 (156)
++|++||.+.+++.
T Consensus 75 ~~dd~iG~~~i~l~ 88 (121)
T cd04016 75 TMDERIAWTHITIP 88 (121)
T ss_pred cCCceEEEEEEECc
Confidence 99999999999995
No 19
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.84 E-value=1.1e-20 Score=128.76 Aligned_cols=94 Identities=21% Similarity=0.276 Sum_probs=79.5
Q ss_pred eEEEEEEEeeeeecccCC---CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEE
Q psy12820 57 RVKVLLRVLAARHLTRSG---RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVC 131 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~---~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V 131 (156)
..+|+|+|++|++|+..+ .+.+||||+|++.... .+..++||++++++ +||+|||+|.|.+...++ ..|.|+|
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~-~k~~kkkT~v~k~t-~nPvfNE~f~F~v~~~~L~~~~L~~~V 91 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQN-AKLKKKQTKRAKHK-INPVWNEMIMFELPSELLAASSVELEV 91 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCC-cccceeccceeeCC-CCCccccEEEEECCHHHhCccEEEEEE
Confidence 357999999999998875 3458999999997543 23347899999988 999999999999886554 4799999
Q ss_pred EecCCCCCCceEEEEEEECCC
Q psy12820 132 QDEDMFGDSNFIGQATYPVYT 152 (156)
Q Consensus 132 ~d~~~~~~~~~iG~~~i~l~~ 152 (156)
||+|..+++++||++.+++..
T Consensus 92 ~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 92 LNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred EeCCCCcCcceeceEEecCcC
Confidence 999999999999999999864
No 20
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.84 E-value=1.3e-20 Score=128.28 Aligned_cols=93 Identities=25% Similarity=0.331 Sum_probs=78.6
Q ss_pred EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEec
Q psy12820 58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQDE 134 (156)
Q Consensus 58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d~ 134 (156)
.+|+|+|++|++|+..+ .+.+||||++++.+.+.... ++||++++++ +||+|||+|.|.+...++ ..|.|+|||+
T Consensus 15 ~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~-k~kT~v~k~t-~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~ 92 (136)
T cd08406 15 ERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKIS-KKKTSVKRDD-TNPIFNEAMIFSVPAIVLQDLSLRVTVAES 92 (136)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCcccc-ccCCccccCC-CCCeeceeEEEECCHHHhCCcEEEEEEEeC
Confidence 47999999999999876 67899999999976433223 6789999988 999999999999875444 4899999999
Q ss_pred CCCCCCceEEEEEEECCC
Q psy12820 135 DMFGDSNFIGQATYPVYT 152 (156)
Q Consensus 135 ~~~~~~~~iG~~~i~l~~ 152 (156)
|..+++++||++.++...
T Consensus 93 d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 93 TEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred CCCCCCCeeEEEEECCCC
Confidence 999999999999997654
No 21
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.84 E-value=2.7e-20 Score=128.35 Aligned_cols=94 Identities=24% Similarity=0.347 Sum_probs=78.4
Q ss_pred EEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeC-----------C----C
Q psy12820 59 KVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN-----------P----E 123 (156)
Q Consensus 59 ~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~-----------~----~ 123 (156)
+|+|+|++|++|+. ..+.+||||+|.+.+...+.. +++|++++++ +||+|||+|.|.+.. + +
T Consensus 1 kL~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~-~~kT~v~~~t-~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~ 77 (148)
T cd04010 1 KLSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQD-TKRTKVKKKT-NNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAE 77 (148)
T ss_pred CEEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCc-ccCCccEeCC-CCCccceEEEEEEecccccccccccCCccccc
Confidence 48999999999988 567899999999976433233 7899999998 999999999999851 1 2
Q ss_pred ccEEEEEEEecCCCCCCceEEEEEEECCCCCC
Q psy12820 124 MALLRFVCQDEDMFGDSNFIGQATYPVYTNRF 155 (156)
Q Consensus 124 ~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~ 155 (156)
...|.|.|||++..++++|||++.|++.++..
T Consensus 78 ~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~ 109 (148)
T cd04010 78 KLELRVDLWHASMGGGDVFLGEVRIPLRGLDL 109 (148)
T ss_pred EEEEEEEEEcCCCCCCCceeEEEEEecccccc
Confidence 24789999999988889999999999998763
No 22
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.84 E-value=2.3e-20 Score=125.60 Aligned_cols=88 Identities=26% Similarity=0.477 Sum_probs=76.5
Q ss_pred EEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeC-----CCccEEEEEEEe
Q psy12820 60 VLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN-----PEMALLRFVCQD 133 (156)
Q Consensus 60 L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~-----~~~~~l~~~V~d 133 (156)
++|+|++|++|+..+ .+.+||||++.+. .. ++||++++++ .||+|||+|.|.+.. +....|.|.|||
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~-----~~-~~kT~v~~~t-~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d 73 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG-----KE-KYSTSVKEKT-TSPVWKEECSFELPGLLSGNGNRATLQLTVMH 73 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEEC-----Ce-eeeeeeecCC-CCCEeCceEEEEecCcccCCCcCCEEEEEEEE
Confidence 479999999998765 6789999999974 23 7899999998 999999999999876 345689999999
Q ss_pred cCCCCCCceEEEEEEECCCCC
Q psy12820 134 EDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 134 ~~~~~~~~~iG~~~i~l~~l~ 154 (156)
++.++++++||++.++++++.
T Consensus 74 ~~~~~~d~~iG~~~i~l~~l~ 94 (126)
T cd08682 74 RNLLGLDKFLGQVSIPLNDLD 94 (126)
T ss_pred ccccCCCceeEEEEEEHHHhh
Confidence 999888999999999998865
No 23
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.84 E-value=3.5e-20 Score=121.59 Aligned_cols=89 Identities=20% Similarity=0.282 Sum_probs=76.2
Q ss_pred EEEEEEeeeeecccCC-----CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc-EEEEEEE
Q psy12820 59 KVLLRVLAARHLTRSG-----RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA-LLRFVCQ 132 (156)
Q Consensus 59 ~L~v~v~~a~~L~~~~-----~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~-~l~~~V~ 132 (156)
.|.|+|++|++|+..+ .+.+||||++++. .. ++||++++++ .||+|||.|.|.+...+.. .|.|.||
T Consensus 2 ~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~-----~~-~~kT~v~~~t-~nPvWne~f~f~v~~~~~~~~L~~~V~ 74 (108)
T cd04039 2 VVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG-----RR-VFRTSWRRHT-LNPVFNERLAFEVYPHEKNFDIQFKVL 74 (108)
T ss_pred EEEEEEEeeeCCCCccccCCCCCccCceEEEEEC-----CE-eEeeeeecCC-CCCcccceEEEEEeCccCCCEEEEEEE
Confidence 5899999999998764 1358999999973 23 6799999998 9999999999998765443 7999999
Q ss_pred ecCCCCCCceEEEEEEECCCCC
Q psy12820 133 DEDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 133 d~~~~~~~~~iG~~~i~l~~l~ 154 (156)
|++..+++++||++.++|++|.
T Consensus 75 D~d~~~~dd~IG~~~l~L~~l~ 96 (108)
T cd04039 75 DKDKFSFNDYVATGSLSVQELL 96 (108)
T ss_pred ECCCCCCCcceEEEEEEHHHHH
Confidence 9999999999999999998875
No 24
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.84 E-value=2.1e-20 Score=124.65 Aligned_cols=96 Identities=23% Similarity=0.286 Sum_probs=79.5
Q ss_pred eEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc-cEEEEEEEecC
Q psy12820 57 RVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM-ALLRFVCQDED 135 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~-~~l~~~V~d~~ 135 (156)
...|.|+|++|++|+..+.+.+||||++++.+...... ++||++++++ .||+|||+|.|.+...+. ..|.|+|||++
T Consensus 11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~-~~kT~v~~~t-~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRF-RQKTSTVPDS-ANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcc-eEeCccccCC-CCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 35799999999999887777899999999976433233 7799999888 999999999999875443 36889999998
Q ss_pred CCC-CCceEEEEEEECCCCC
Q psy12820 136 MFG-DSNFIGQATYPVYTNR 154 (156)
Q Consensus 136 ~~~-~~~~iG~~~i~l~~l~ 154 (156)
..+ ++++||.+.||+.++-
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~ 108 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIV 108 (119)
T ss_pred CCcCCCEEEEEEEecHHHhc
Confidence 765 4689999999998763
No 25
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.83 E-value=5.3e-20 Score=121.26 Aligned_cols=92 Identities=17% Similarity=0.276 Sum_probs=78.4
Q ss_pred EEEEEEeeeeecccCC-C-CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC---ccEEEEEEEe
Q psy12820 59 KVLLRVLAARHLTRSG-R-CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE---MALLRFVCQD 133 (156)
Q Consensus 59 ~L~v~v~~a~~L~~~~-~-~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~---~~~l~~~V~d 133 (156)
.|+|+|++|++|+..+ . +.+||||++.+.+. ... ..+|++++++ .||+|||+|.|.+..++ ...|.|+|||
T Consensus 2 ~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~--~~~-~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d 77 (111)
T cd04041 2 VLVVTIHRATDLPKADFGTGSSDPYVTASFAKF--GKP-LYSTRIIRKD-LNPVWEETWFVLVTPDEVKAGERLSCRLWD 77 (111)
T ss_pred EEEEEEEEeeCCCcccCCCCCCCccEEEEEccC--CCc-cEeeeeECCC-CCCccceeEEEEeCchhccCCCEEEEEEEe
Confidence 6899999999999876 4 78999999998542 123 6799999998 99999999999877552 3589999999
Q ss_pred cCCCCCCceEEEEEEECCCCC
Q psy12820 134 EDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 134 ~~~~~~~~~iG~~~i~l~~l~ 154 (156)
++..+++++||++.+++++|.
T Consensus 78 ~d~~~~dd~lG~~~i~l~~l~ 98 (111)
T cd04041 78 SDRFTADDRLGRVEIDLKELI 98 (111)
T ss_pred CCCCCCCCcceEEEEEHHHHh
Confidence 999999999999999998764
No 26
>KOG1030|consensus
Probab=99.83 E-value=4.7e-20 Score=126.78 Aligned_cols=89 Identities=33% Similarity=0.551 Sum_probs=79.9
Q ss_pred EEEEEEEeeeeecccCCC-CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCC
Q psy12820 58 VKVLLRVLAARHLTRSGR-CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDM 136 (156)
Q Consensus 58 ~~L~v~v~~a~~L~~~~~-~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~ 136 (156)
..|+|+|++|.+|...+. +++||||.+.+. .+ +.||+++.+| +||+|||.|.|.+..+. ..|.+.|||+|.
T Consensus 6 GLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg-----~q-~lkT~~v~~n-~NPeWNe~ltf~v~d~~-~~lkv~VyD~D~ 77 (168)
T KOG1030|consen 6 GLLRVRVKRGKNLAIRDFLGSSDPYVVLELG-----NQ-KLKTRVVYKN-LNPEWNEELTFTVKDPN-TPLKVTVYDKDT 77 (168)
T ss_pred eEEEEEEEeecCeeeeccccCCCCeEEEEEC-----Ce-eeeeeeecCC-CCCcccceEEEEecCCC-ceEEEEEEeCCC
Confidence 579999999999998886 899999999974 34 8899999998 99999999999999764 679999999999
Q ss_pred CCCCceEEEEEEECCCCC
Q psy12820 137 FGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 137 ~~~~~~iG~~~i~l~~l~ 154 (156)
++++|++|.+.|++..+.
T Consensus 78 fs~dD~mG~A~I~l~p~~ 95 (168)
T KOG1030|consen 78 FSSDDFMGEATIPLKPLL 95 (168)
T ss_pred CCcccccceeeeccHHHH
Confidence 999999999999987654
No 27
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.82 E-value=1.1e-19 Score=122.68 Aligned_cols=93 Identities=20% Similarity=0.437 Sum_probs=77.1
Q ss_pred eEEEEEEEeeeeecccCC-C-CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEE-EeCCCc--cEEEEEE
Q psy12820 57 RVKVLLRVLAARHLTRSG-R-CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT-VHNPEM--ALLRFVC 131 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~-~-~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~-v~~~~~--~~l~~~V 131 (156)
..+|+|+|++|++|+..+ . +.+||||++.+... ...+.||++++++ +||+|||+|.|. +...+. ..|.|.|
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~---~~~~~kT~v~~~t-~nP~wnE~F~f~~~~~~~~~~~~L~~~V 90 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPE---KEHKVKTRVLRKT-RNPVYDETFTFYGIPYNQLQDLSLHFAV 90 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCC---cCceeeccEEcCC-CCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence 458999999999999865 3 78999999998632 2337799999988 999999999994 543222 3799999
Q ss_pred EecCCCCCCceEEEEEEECCCC
Q psy12820 132 QDEDMFGDSNFIGQATYPVYTN 153 (156)
Q Consensus 132 ~d~~~~~~~~~iG~~~i~l~~l 153 (156)
||++..+++++||++.++|+++
T Consensus 91 ~d~d~~~~d~~lG~~~i~L~~l 112 (128)
T cd08388 91 LSFDRYSRDDVIGEVVCPLAGA 112 (128)
T ss_pred EEcCCCCCCceeEEEEEecccc
Confidence 9999999999999999999987
No 28
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.82 E-value=1.1e-19 Score=121.06 Aligned_cols=90 Identities=29% Similarity=0.479 Sum_probs=77.2
Q ss_pred EEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCC
Q psy12820 60 VLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG 138 (156)
Q Consensus 60 L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~ 138 (156)
|+|+|++|++|+..+ .+.+||||++.+.+. ... ++||++++++ .||+|||+|.|.+..+....|.|+|||++..
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~--~~~-~~kT~vv~~t-~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~- 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTA--SDE-KKRTKTIKNS-INPVWNETFEFRIQSQVKNVLELTVMDEDYV- 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCC--CCc-cCccceecCC-CCCccceEEEEEeCcccCCEEEEEEEECCCC-
Confidence 789999999998875 578999999998532 123 6799999988 9999999999998876556899999999988
Q ss_pred CCceEEEEEEECCCCC
Q psy12820 139 DSNFIGQATYPVYTNR 154 (156)
Q Consensus 139 ~~~~iG~~~i~l~~l~ 154 (156)
++++||++.++++++.
T Consensus 77 ~~~~iG~~~~~l~~l~ 92 (119)
T cd04036 77 MDDHLGTVLFDVSKLK 92 (119)
T ss_pred CCcccEEEEEEHHHCC
Confidence 7899999999998875
No 29
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.82 E-value=9.9e-20 Score=124.34 Aligned_cols=96 Identities=15% Similarity=0.216 Sum_probs=79.8
Q ss_pred eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEe
Q psy12820 57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQD 133 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d 133 (156)
..+|.|+|++|++|+..+ .+.+||||++.+.........++||++++++ .||+|||+|.|.+...++ ..|.|+|||
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t-~nPvfnEtF~f~i~~~~l~~~~L~~~V~~ 92 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQ-PDPEFKETFVFQVALFQLSEVTLMFSVYN 92 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCC-CCCcEeeeEEEECCHHHhCccEEEEEEEE
Confidence 357999999999998875 6689999999997532222236799999988 999999999999875444 489999999
Q ss_pred cCCCCCCceEEEEEEECCCC
Q psy12820 134 EDMFGDSNFIGQATYPVYTN 153 (156)
Q Consensus 134 ~~~~~~~~~iG~~~i~l~~l 153 (156)
++..+++++||++.+++...
T Consensus 93 ~~~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 93 KRKMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred CCCCCCCcEEEEEEECCcCC
Confidence 99999999999999988754
No 30
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.82 E-value=1.7e-19 Score=122.93 Aligned_cols=92 Identities=27% Similarity=0.464 Sum_probs=80.9
Q ss_pred eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecC
Q psy12820 57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDED 135 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~ 135 (156)
...|+|+|++|++|+..+ .+.+||||++.+. .. +.+|++++++ .||.|||+|.|.+..+....|.|+|||++
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~-----~~-~~kT~vi~~t-~nP~Wne~f~f~v~~~~~~~l~i~V~D~d 86 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG-----SQ-EHKTKVVSDT-LNPKWNSSMQFFVKDLEQDVLCITVFDRD 86 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC-----CE-eeeccccCCC-CCCccCceEEEEecCccCCEEEEEEEECC
Confidence 368999999999998875 6789999999973 23 7899999988 99999999999998777778999999999
Q ss_pred CCCCCceEEEEEEECCCCCC
Q psy12820 136 MFGDSNFIGQATYPVYTNRF 155 (156)
Q Consensus 136 ~~~~~~~iG~~~i~l~~l~~ 155 (156)
..+++++||++.+++.++..
T Consensus 87 ~~~~d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 87 FFSPDDFLGRTEIRVADILK 106 (136)
T ss_pred CCCCCCeeEEEEEEHHHhcc
Confidence 99889999999999987653
No 31
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.82 E-value=1.3e-19 Score=121.57 Aligned_cols=94 Identities=28% Similarity=0.439 Sum_probs=79.4
Q ss_pred eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEe
Q psy12820 57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQD 133 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d 133 (156)
...|+|+|++|++|+..+ .+.+||||++.+.+. ... +++|++++++ .||+|||+|.|.+...++ ..|.|+|||
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~--~~~-~~kT~v~~~t-~nP~wne~f~f~i~~~~l~~~~l~~~V~d 90 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPD--KKK-KFETKVHRKT-LNPVFNETFTFKVPYSELGNKTLVFSVYD 90 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcC--CCC-ceecccCcCC-CCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence 357999999999998765 668899999998642 223 7899999888 999999999999875433 489999999
Q ss_pred cCCCCCCceEEEEEEECCCCC
Q psy12820 134 EDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 134 ~~~~~~~~~iG~~~i~l~~l~ 154 (156)
++..+++++||++.++++++.
T Consensus 91 ~d~~~~~~~lG~~~i~l~~~~ 111 (124)
T cd08385 91 FDRFSKHDLIGEVRVPLLTVD 111 (124)
T ss_pred CCCCCCCceeEEEEEecCccc
Confidence 999989999999999999863
No 32
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.81 E-value=4.9e-19 Score=119.05 Aligned_cols=95 Identities=42% Similarity=0.772 Sum_probs=82.1
Q ss_pred EEEEEEEeeeeecccCC---CCCCCCEEEEEEecCCC-CCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEe
Q psy12820 58 VKVLLRVLAARHLTRSG---RCTTSPFVEVEVLGADY-DTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQD 133 (156)
Q Consensus 58 ~~L~v~v~~a~~L~~~~---~~~~dpyv~v~l~~~~~-~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d 133 (156)
..|+|+|++|++|+..+ .+..||||++++.+.+. +.. +.||+++.+++.||.|||+|.|.+..++...|.|+|||
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~-~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d 80 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSA-KFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYD 80 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCC-cEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEe
Confidence 57999999999998765 57889999999986543 334 78999988885699999999999988877889999999
Q ss_pred cCCCCCCceEEEEEEECCCCC
Q psy12820 134 EDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 134 ~~~~~~~~~iG~~~i~l~~l~ 154 (156)
++.. ++++||++.+++++|.
T Consensus 81 ~~~~-~~~~iG~~~~~l~~l~ 100 (128)
T cd00275 81 EDSG-DDDFLGQACLPLDSLR 100 (128)
T ss_pred CCCC-CCcEeEEEEEEhHHhc
Confidence 9887 7899999999998874
No 33
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.81 E-value=1.9e-19 Score=119.67 Aligned_cols=88 Identities=23% Similarity=0.391 Sum_probs=75.7
Q ss_pred EEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820 59 KVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF 137 (156)
Q Consensus 59 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~ 137 (156)
.|+|+|++|++|+..+ .+.+||||++.+.+ . +.+|+++.+++.||+|||+|.|.+..+....|.|+|||++..
T Consensus 2 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-----~-~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~ 75 (118)
T cd08681 2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-----V-TKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR 75 (118)
T ss_pred EEEEEEEEccCCCCCCcCCCCCceEEEEECC-----C-ccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC
Confidence 6899999999998875 67899999999742 2 678888766558999999999999876667899999999887
Q ss_pred CCCceEEEEEEECCCC
Q psy12820 138 GDSNFIGQATYPVYTN 153 (156)
Q Consensus 138 ~~~~~iG~~~i~l~~l 153 (156)
+ +++||++.++++++
T Consensus 76 ~-~~~iG~~~~~l~~~ 90 (118)
T cd08681 76 K-PDLIGDTEVDLSPA 90 (118)
T ss_pred C-CcceEEEEEecHHH
Confidence 6 89999999999875
No 34
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.81 E-value=2.4e-19 Score=120.26 Aligned_cols=94 Identities=27% Similarity=0.452 Sum_probs=78.6
Q ss_pred eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeC-C--CccEEEEEEE
Q psy12820 57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN-P--EMALLRFVCQ 132 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~-~--~~~~l~~~V~ 132 (156)
...|.|+|++|++|+..+ .+.+||||++.+.+...+.. +++|++++++ .||+|||+|.|.+.. . ....|.|+||
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~-~~kT~v~~~t-~nP~wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKS-KRRTKTVKKT-LNPEWNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccc-cccccccCCC-CCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence 357999999999998875 56899999999875433333 7799999988 999999999998643 2 2358999999
Q ss_pred ecCCCCCCceEEEEEEECCC
Q psy12820 133 DEDMFGDSNFIGQATYPVYT 152 (156)
Q Consensus 133 d~~~~~~~~~iG~~~i~l~~ 152 (156)
|++..+++++||++.+++++
T Consensus 93 d~~~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 93 DYDRDGENDFLGEVVIDLAD 112 (125)
T ss_pred eCCCCCCCcEeeEEEEeccc
Confidence 99998889999999999987
No 35
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.81 E-value=2.4e-19 Score=120.38 Aligned_cols=87 Identities=24% Similarity=0.332 Sum_probs=74.3
Q ss_pred EEEEEeeeee---cccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecC
Q psy12820 60 VLLRVLAARH---LTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDED 135 (156)
Q Consensus 60 L~v~v~~a~~---L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~ 135 (156)
|.|+|++|++ |+..+ .+.+||||++.+. .. +.||++++++ .||+|||+|.|.+..+. ..|.|+|||++
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g-----~~-~~rTk~~~~~-~nP~WnE~f~f~v~~~~-~~l~v~V~d~d 73 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG-----PK-WVRTRTVEDS-SNPRWNEQYTWPVYDPC-TVLTVGVFDNS 73 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEEC-----CE-EeEcCcccCC-CCCcceeEEEEEecCCC-CEEEEEEEECC
Confidence 7899999999 66555 7789999999973 33 7799999988 99999999999987654 48999999998
Q ss_pred CCC------CCceEEEEEEECCCCC
Q psy12820 136 MFG------DSNFIGQATYPVYTNR 154 (156)
Q Consensus 136 ~~~------~~~~iG~~~i~l~~l~ 154 (156)
..+ .+++||++.++++++.
T Consensus 74 ~~~~~~~~~~dd~lG~~~i~l~~l~ 98 (126)
T cd08379 74 QSHWKEAVQPDVLIGKVRIRLSTLE 98 (126)
T ss_pred CccccccCCCCceEEEEEEEHHHcc
Confidence 763 7899999999988765
No 36
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.81 E-value=1.9e-19 Score=124.43 Aligned_cols=90 Identities=23% Similarity=0.437 Sum_probs=76.5
Q ss_pred EEEEEEeeeeecccCCC---------------CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC
Q psy12820 59 KVLLRVLAARHLTRSGR---------------CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE 123 (156)
Q Consensus 59 ~L~v~v~~a~~L~~~~~---------------~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~ 123 (156)
+|.|+|++|++|+..+. +.+||||+|.+.+ . +.||++++++ .||+|||+|.|.+..+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g-----~-~~kT~v~~~t-~nPvWNE~f~f~v~~p~ 73 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG-----Q-KVKTSVKKNS-YNPEWNEQIVFPEMFPP 73 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC-----E-eeecceEcCC-CCCCcceEEEEEeeCCC
Confidence 37899999999998652 3689999999753 2 5689999988 99999999999987655
Q ss_pred c-cEEEEEEEecCCCCCCceEEEEEEECCCCCC
Q psy12820 124 M-ALLRFVCQDEDMFGDSNFIGQATYPVYTNRF 155 (156)
Q Consensus 124 ~-~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~ 155 (156)
. ..|.|+|||+|..+++++||++.+++.++..
T Consensus 74 ~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~ 106 (151)
T cd04018 74 LCERIKIQIRDWDRVGNDDVIGTHFIDLSKISN 106 (151)
T ss_pred cCCEEEEEEEECCCCCCCCEEEEEEEeHHHhcc
Confidence 4 4899999999999899999999999987653
No 37
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.81 E-value=2.8e-19 Score=121.32 Aligned_cols=94 Identities=17% Similarity=0.328 Sum_probs=79.7
Q ss_pred eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEe
Q psy12820 57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQD 133 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d 133 (156)
...|.|+|++|++|+..+ .+.+||||++.+.+...... +.+|++++++ .||+|||+|.|.+..+++ ..|.|+|||
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~-~~kT~v~~~t-~nP~wne~f~f~~~~~~l~~~~l~~~V~d 89 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKS-KHKTQVKKKT-LNPEFNEEFFYDIKHSDLAKKTLEITVWD 89 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccC-CceeeeEecc-CCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence 458999999999998876 57899999999875432233 7899999988 999999999999876543 479999999
Q ss_pred cCCCCCCceEEEEEEECCC
Q psy12820 134 EDMFGDSNFIGQATYPVYT 152 (156)
Q Consensus 134 ~~~~~~~~~iG~~~i~l~~ 152 (156)
++..+++++||++.+++++
T Consensus 90 ~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 90 KDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred CCCCCCccEEEEEEEecCC
Confidence 9988889999999999976
No 38
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.81 E-value=3.2e-19 Score=119.95 Aligned_cols=96 Identities=23% Similarity=0.391 Sum_probs=80.2
Q ss_pred eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEe
Q psy12820 57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQD 133 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d 133 (156)
...|+|+|++|++|+..+ .+.+||||++.+.+.+.... ++||++++++ .||+|||+|.|.+...++ ..|.+.|||
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~-~~kT~v~~~~-~nP~wne~f~f~i~~~~l~~~~l~i~v~~ 92 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKST-RRKTSVKKDN-LNPVFDETFEFPVSLEELKRRTLDVAVKN 92 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCc-eEecccccCC-CCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence 357999999999999876 57899999999875432233 7899999998 999999999999865433 589999999
Q ss_pred cCCC--CCCceEEEEEEECCCCC
Q psy12820 134 EDMF--GDSNFIGQATYPVYTNR 154 (156)
Q Consensus 134 ~~~~--~~~~~iG~~~i~l~~l~ 154 (156)
++.. +++++||++.++++++.
T Consensus 93 ~~~~~~~~~~~iG~~~i~l~~l~ 115 (127)
T cd04030 93 SKSFLSREKKLLGQVLIDLSDLD 115 (127)
T ss_pred CCcccCCCCceEEEEEEeccccc
Confidence 9875 67899999999999874
No 39
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.81 E-value=3.5e-19 Score=120.93 Aligned_cols=97 Identities=30% Similarity=0.416 Sum_probs=80.7
Q ss_pred EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCC-CCCceEEeEEecCCCCCCeeCceEEEEEeCC----CccEEEEEE
Q psy12820 58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADY-DTGLKLTTKTVSDNGFNPTWNESCEFTVHNP----EMALLRFVC 131 (156)
Q Consensus 58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~-~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~----~~~~l~~~V 131 (156)
..|+|+|++|++|+..+ .+.+||||+|.+.+... ....++||++++++ +||+|||+|.|.+... ....|.|+|
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t-~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKT-LFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCC-CCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 57999999999998865 57899999999864321 01237899999998 9999999999998753 235899999
Q ss_pred EecCCCCCCceEEEEEEECCCCCC
Q psy12820 132 QDEDMFGDSNFIGQATYPVYTNRF 155 (156)
Q Consensus 132 ~d~~~~~~~~~iG~~~i~l~~l~~ 155 (156)
||++..+++++||++.++|+++..
T Consensus 95 ~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 95 KDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EecCCCCCCcEeEEEEEeHHHCCc
Confidence 999999889999999999998763
No 40
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=1.9e-19 Score=121.31 Aligned_cols=89 Identities=26% Similarity=0.462 Sum_probs=75.9
Q ss_pred EEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc---cEEEEEEEec
Q psy12820 59 KVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM---ALLRFVCQDE 134 (156)
Q Consensus 59 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~---~~l~~~V~d~ 134 (156)
+|+|+|++|++|+..+ .+.+||||++.+.+ . ++||++++++ .||+|||+|.|.+..++. ..|.|.|||+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~-~~rT~v~~~t-~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~ 73 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG-----Q-KKRTRTKPKD-LNPVWNEKLVFNVSDPSRLSNLVLEVYVYND 73 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC-----E-EecceeEcCC-CCCccceEEEEEccCHHHccCCeEEEEEeeC
Confidence 4899999999998765 57899999998743 3 7789999887 999999999999875432 4799999999
Q ss_pred CCCC-CCceEEEEEEECCCCC
Q psy12820 135 DMFG-DSNFIGQATYPVYTNR 154 (156)
Q Consensus 135 ~~~~-~~~~iG~~~i~l~~l~ 154 (156)
+..+ .+++||++.++++++.
T Consensus 74 ~~~~~~d~~lG~v~i~l~~l~ 94 (127)
T cd04022 74 RRSGRRRSFLGRVRISGTSFV 94 (127)
T ss_pred CCCcCCCCeeeEEEEcHHHcC
Confidence 8876 7899999999998876
No 41
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.81 E-value=4.1e-19 Score=119.45 Aligned_cols=91 Identities=24% Similarity=0.262 Sum_probs=77.4
Q ss_pred eeEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEE-eCCCccEEEEEEEec
Q psy12820 56 TRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTV-HNPEMALLRFVCQDE 134 (156)
Q Consensus 56 ~~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v-~~~~~~~l~~~V~d~ 134 (156)
...+|+|+|++|++|+....+.+||||+|.+.+ . ++||++++++ .||+|||+|.|.. .......|.|+|||+
T Consensus 26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~-----~-~~kT~vi~~t-~nPvWNE~F~f~~~~~~~~~~L~v~V~D~ 98 (127)
T cd04032 26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGG-----Q-EKRTEVIWNN-NNPRWNATFDFGSVELSPGGKLRFEVWDR 98 (127)
T ss_pred CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECC-----c-cccCceecCC-CCCcCCCEEEEecccCCCCCEEEEEEEeC
Confidence 346899999999999865567889999999742 2 7899999998 9999999999974 334556999999999
Q ss_pred CCCCCCceEEEEEEECCCC
Q psy12820 135 DMFGDSNFIGQATYPVYTN 153 (156)
Q Consensus 135 ~~~~~~~~iG~~~i~l~~l 153 (156)
+..+++++||++.+++...
T Consensus 99 d~~s~dd~IG~~~i~l~~~ 117 (127)
T cd04032 99 DNGWDDDLLGTCSVVPEAG 117 (127)
T ss_pred CCCCCCCeeEEEEEEecCC
Confidence 9999999999999998754
No 42
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.81 E-value=1.7e-19 Score=118.64 Aligned_cols=89 Identities=28% Similarity=0.421 Sum_probs=77.3
Q ss_pred EEEEEeeeeecccCC--CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCee-CceEEEEEeCCCc--cEEEEEEEec
Q psy12820 60 VLLRVLAARHLTRSG--RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTW-NESCEFTVHNPEM--ALLRFVCQDE 134 (156)
Q Consensus 60 L~v~v~~a~~L~~~~--~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w-~e~f~f~v~~~~~--~~l~~~V~d~ 134 (156)
|+|+|++|++|+..+ .+.+||||++.+.+ . +.||++++++ +||.| ||+|.|.+...++ ..|.|+|||+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~-----~-~~kT~v~~~~-~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~ 73 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS-----T-TYKTDVVKKS-LNPVWNSEWFRFEVDDEELQDEPLQIRVMDH 73 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC-----e-eEecceecCC-CCCcccCcEEEEEcChHHcCCCeEEEEEEeC
Confidence 579999999998765 46789999999842 3 8899999988 99999 9999999886543 5899999999
Q ss_pred CCCCCCceEEEEEEECCCCCC
Q psy12820 135 DMFGDSNFIGQATYPVYTNRF 155 (156)
Q Consensus 135 ~~~~~~~~iG~~~i~l~~l~~ 155 (156)
+..+++++||++.++++++..
T Consensus 74 d~~~~~~~iG~~~~~l~~l~~ 94 (110)
T cd08688 74 DTYSANDAIGKVYIDLNPLLL 94 (110)
T ss_pred CCCCCCCceEEEEEeHHHhcc
Confidence 999999999999999988754
No 43
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.81 E-value=3.6e-19 Score=119.22 Aligned_cols=89 Identities=29% Similarity=0.459 Sum_probs=77.7
Q ss_pred EEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820 59 KVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF 137 (156)
Q Consensus 59 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~ 137 (156)
+|+|+|++|++|+..+ .+.+||||++.+.+ . +.+|++++++ .||.|||+|.|.+.......|.|+|||++..
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~-----~-~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~ 73 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG-----Q-TLETSVVKKS-CYPRWNEVFEFELMEGADSPLSVEVWDWDLV 73 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECC-----E-EEeceeecCC-CCCccCcEEEEEcCCCCCCEEEEEEEECCCC
Confidence 4899999999998876 56789999999732 2 6789999988 9999999999998876667899999999999
Q ss_pred CCCceEEEEEEECCCCC
Q psy12820 138 GDSNFIGQATYPVYTNR 154 (156)
Q Consensus 138 ~~~~~iG~~~i~l~~l~ 154 (156)
+++++||++.++++++.
T Consensus 74 ~~~~~iG~~~~~l~~l~ 90 (123)
T cd04025 74 SKNDFLGKVVFSIQTLQ 90 (123)
T ss_pred CCCcEeEEEEEEHHHcc
Confidence 98999999999998774
No 44
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.80 E-value=5.2e-19 Score=122.36 Aligned_cols=89 Identities=22% Similarity=0.300 Sum_probs=77.2
Q ss_pred EEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCC
Q psy12820 60 VLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG 138 (156)
Q Consensus 60 L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~ 138 (156)
|+|+|++|++|+..+ .+.+||||++.+.+ . +.+|+++.+++.||+|||+|.|.+..+....+.|.|+|++..+
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~-----~-~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~ 75 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGN-----Q-VLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPN 75 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECC-----E-EeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCC
Confidence 789999999998876 67899999999842 3 7789988764599999999999987765678999999999888
Q ss_pred CCceEEEEEEECCCCC
Q psy12820 139 DSNFIGQATYPVYTNR 154 (156)
Q Consensus 139 ~~~~iG~~~i~l~~l~ 154 (156)
++++||++.++|+++.
T Consensus 76 ~dd~lG~v~i~L~~l~ 91 (150)
T cd04019 76 KDEPLGRAVIPLNDIE 91 (150)
T ss_pred CCCeEEEEEEEHHHCc
Confidence 8899999999998874
No 45
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.80 E-value=6.5e-19 Score=118.14 Aligned_cols=93 Identities=24% Similarity=0.356 Sum_probs=79.3
Q ss_pred EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC--ccEEEEEEEec
Q psy12820 58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE--MALLRFVCQDE 134 (156)
Q Consensus 58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~--~~~l~~~V~d~ 134 (156)
..|.|+|++|++|+..+ .+.+||||++.+... +.. +.+|++++++ .||+|||+|.|.+...+ ...|.|+|||+
T Consensus 16 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~--~~~-~~kT~v~~~t-~~P~wne~f~f~v~~~~l~~~~l~i~V~d~ 91 (124)
T cd08387 16 GILNVKLIQARNLQPRDFSGTADPYCKVRLLPD--RSN-TKQSKIHKKT-LNPEFDESFVFEVPPQELPKRTLEVLLYDF 91 (124)
T ss_pred CEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecC--CCC-cEeCceEcCC-CCCCcccEEEEeCCHHHhCCCEEEEEEEEC
Confidence 47999999999998765 678999999998522 233 6899999998 99999999999987544 34899999999
Q ss_pred CCCCCCceEEEEEEECCCCC
Q psy12820 135 DMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 135 ~~~~~~~~iG~~~i~l~~l~ 154 (156)
+..+++++||++.++++++.
T Consensus 92 ~~~~~~~~iG~~~i~l~~~~ 111 (124)
T cd08387 92 DQFSRDECIGVVELPLAEVD 111 (124)
T ss_pred CCCCCCceeEEEEEeccccc
Confidence 99988999999999999875
No 46
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.80 E-value=7.1e-19 Score=123.17 Aligned_cols=97 Identities=23% Similarity=0.374 Sum_probs=80.5
Q ss_pred eeEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCC-Cc--cEEEEEE
Q psy12820 56 TRVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNP-EM--ALLRFVC 131 (156)
Q Consensus 56 ~~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~-~~--~~l~~~V 131 (156)
....|.|+|++|++|+..+ .+.+||||++.+........ ++||++++++ .||+|||+|.|.+... ++ ..|.|+|
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~-~~kT~vi~~t-~nP~WnE~f~f~~~~~~~l~~~~L~i~V 102 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKS-KQKTPVVKKS-VNPVWNHTFVYDGVSPEDLSQACLELTV 102 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCc-ceeCCccCCC-CCCCCCCEEEEecCCHHHhCCCEEEEEE
Confidence 4568999999999999876 67899999999864433333 7899999998 9999999999985422 22 4799999
Q ss_pred EecCCCCCCceEEEEEEECCCCC
Q psy12820 132 QDEDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 132 ~d~~~~~~~~~iG~~~i~l~~l~ 154 (156)
||++..+++++||++.++++++.
T Consensus 103 ~d~d~~~~d~~lG~v~i~l~~~~ 125 (162)
T cd04020 103 WDHDKLSSNDFLGGVRLGLGTGK 125 (162)
T ss_pred EeCCCCCCCceEEEEEEeCCccc
Confidence 99999988999999999998864
No 47
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.80 E-value=4.7e-19 Score=118.47 Aligned_cols=96 Identities=20% Similarity=0.387 Sum_probs=79.8
Q ss_pred eEEEEEEEeeeeecccCC--CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC--ccEEEEEEE
Q psy12820 57 RVKVLLRVLAARHLTRSG--RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE--MALLRFVCQ 132 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~--~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~--~~~l~~~V~ 132 (156)
...|+|+|++|++|+..+ .+.+||||++.+.+...... +.+|++++++ .||+|||+|.|.+...+ ...|.|+||
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~-~~kT~v~~~t-~~P~wne~f~f~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQS-KRKTSVKKNT-TNPVFNETLKYHISKSQLETRTLQLSVW 90 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCc-eeeccccCCC-CCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 357999999999998765 56899999999874332223 7899998887 99999999999977543 348999999
Q ss_pred ecCCCCCCceEEEEEEECCCCC
Q psy12820 133 DEDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 133 d~~~~~~~~~iG~~~i~l~~l~ 154 (156)
|++..+++++||++.++++++.
T Consensus 91 d~~~~~~~~~iG~~~i~l~~l~ 112 (123)
T cd08521 91 HHDRFGRNTFLGEVEIPLDSWD 112 (123)
T ss_pred eCCCCcCCceeeEEEEeccccc
Confidence 9999889999999999998873
No 48
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.80 E-value=6.2e-19 Score=117.78 Aligned_cols=89 Identities=22% Similarity=0.344 Sum_probs=76.9
Q ss_pred EEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820 59 KVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF 137 (156)
Q Consensus 59 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~ 137 (156)
.|+|+|++|++|+..+ .+.+||||++.+.+ .. ..+|++++++ .||.|||+|.|.+..+. ..|.|+|||++..
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~----~~-~~kT~~~~~t-~nP~Wne~f~f~v~~~~-~~l~~~v~D~d~~ 73 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGG----KT-VYKSKTIYKN-LNPVWDEKFTLPIEDVT-QPLYIKVFDYDRG 73 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECC----EE-EEEeeeccCC-CCCccceeEEEEecCCC-CeEEEEEEeCCCC
Confidence 3889999999998765 67899999998742 23 6899999887 99999999999987543 6899999999999
Q ss_pred CCCceEEEEEEECCCCC
Q psy12820 138 GDSNFIGQATYPVYTNR 154 (156)
Q Consensus 138 ~~~~~iG~~~i~l~~l~ 154 (156)
+++++||++.++++++.
T Consensus 74 ~~~~~iG~~~~~l~~l~ 90 (121)
T cd04042 74 LTDDFMGSAFVDLSTLE 90 (121)
T ss_pred CCCcceEEEEEEHHHcC
Confidence 89999999999998865
No 49
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.80 E-value=7.1e-19 Score=116.56 Aligned_cols=88 Identities=19% Similarity=0.369 Sum_probs=77.2
Q ss_pred EEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCC
Q psy12820 60 VLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG 138 (156)
Q Consensus 60 L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~ 138 (156)
++|+|++|++|+..+ .+.+||||++.+.+ . +.+|++++++ .||.|||+|.|.+..+....|.|+|||++..+
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~-~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~ 74 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGN-----E-KYKSKVCSKT-LNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK 74 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEECC-----E-eEecccccCC-CCCceeEEEEEEecCCCCCEEEEEEEECCCCC
Confidence 789999999999876 67899999999742 2 6889999887 99999999999988766679999999999988
Q ss_pred CCceEEEEEEECCCCC
Q psy12820 139 DSNFIGQATYPVYTNR 154 (156)
Q Consensus 139 ~~~~iG~~~i~l~~l~ 154 (156)
++++||++.++++++.
T Consensus 75 ~~~~iG~~~~~l~~l~ 90 (116)
T cd08376 75 KDEFIGRCEIDLSALP 90 (116)
T ss_pred CCCeEEEEEEeHHHCC
Confidence 8999999999987764
No 50
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.79 E-value=4.3e-19 Score=120.90 Aligned_cols=94 Identities=24% Similarity=0.367 Sum_probs=78.1
Q ss_pred eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEe
Q psy12820 57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQD 133 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d 133 (156)
...|.|+|++|++|+..+ .+.+||||++.+.+...... +.||++++++ .||.|+|+|.|.+...+. ..|.|+|||
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~-~~kT~v~k~t-~nP~w~e~F~f~v~~~~~~~~~l~~~v~d 91 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRIS-KKKTHVKKCT-LNPVFNESFVFDIPSEELEDISVEFLVLD 91 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceee-eEcCccccCC-CCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence 357999999999998875 67899999999864322222 6789988888 999999999999875433 478899999
Q ss_pred cCCCCCCceEEEEEEECCC
Q psy12820 134 EDMFGDSNFIGQATYPVYT 152 (156)
Q Consensus 134 ~~~~~~~~~iG~~~i~l~~ 152 (156)
++..+++++||++.+++..
T Consensus 92 ~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 92 SDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred CCCCCCCccEEEEEECCcC
Confidence 9999999999999999876
No 51
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.79 E-value=1.4e-18 Score=116.91 Aligned_cols=88 Identities=25% Similarity=0.383 Sum_probs=75.5
Q ss_pred EEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCCC
Q psy12820 60 VLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGD 139 (156)
Q Consensus 60 L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~ 139 (156)
|.|+|++|++|+. ..+.+||||++++.. ...+.+|++++++ .||+|||.|.|.+.. ....|.|+|||++..++
T Consensus 1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~----~~~~~kT~v~~~t-~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~ 73 (126)
T cd08678 1 LLVKNIKANGLSE-AAGSSNPYCVLEMDE----PPQKYQSSTQKNT-SNPFWDEHFLFELSP-NSKELLFEVYDNGKKSD 73 (126)
T ss_pred CEEEEEEecCCCC-CCCCcCCEEEEEECC----CCcEEEeEEEecC-CCCccCceEEEEeCC-CCCEEEEEEEECCCCCC
Confidence 5799999999988 778999999999731 1226899999998 999999999999853 34689999999999888
Q ss_pred CceEEEEEEECCCCC
Q psy12820 140 SNFIGQATYPVYTNR 154 (156)
Q Consensus 140 ~~~iG~~~i~l~~l~ 154 (156)
+++||++.++++++.
T Consensus 74 ~~~lG~~~i~l~~l~ 88 (126)
T cd08678 74 SKFLGLAIVPFDELR 88 (126)
T ss_pred CceEEEEEEeHHHhc
Confidence 999999999998764
No 52
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.79 E-value=7.8e-19 Score=119.58 Aligned_cols=94 Identities=22% Similarity=0.333 Sum_probs=78.1
Q ss_pred EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEec
Q psy12820 58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQDE 134 (156)
Q Consensus 58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d~ 134 (156)
.+|+|+|++|++|+..+ .+.+||||+|.+.+.+.... +++|++++++ .||.|||+|.|.+...++ ..|.|+|||+
T Consensus 15 ~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~-~~kT~v~~~t-~nP~wne~f~f~i~~~~l~~~~l~~~v~d~ 92 (136)
T cd08402 15 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLK-KKKTTIKKRT-LNPYYNESFSFEVPFEQIQKVHLIVTVLDY 92 (136)
T ss_pred CeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccc-eeeccceeCC-CCCcccceEEEECCHHHhCCCEEEEEEEeC
Confidence 57999999999998765 67899999999864322223 6789888887 999999999999875443 3799999999
Q ss_pred CCCCCCceEEEEEEECCCC
Q psy12820 135 DMFGDSNFIGQATYPVYTN 153 (156)
Q Consensus 135 ~~~~~~~~iG~~~i~l~~l 153 (156)
+..+++++||++.+++...
T Consensus 93 ~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 93 DRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred CCCCCCceeEEEEECCccC
Confidence 9999999999999998764
No 53
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.79 E-value=2.1e-18 Score=115.77 Aligned_cols=90 Identities=18% Similarity=0.353 Sum_probs=77.1
Q ss_pred EEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCC
Q psy12820 60 VLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG 138 (156)
Q Consensus 60 L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~ 138 (156)
|+|.|++|++|+..+ .+.+||||++.+.+. .. +.||++++++ +||.|||+|.|.+..++...|.|+|||++..+
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~---~~-~~kT~~v~~t-~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~ 76 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKK---KI-NDRDNYIPNT-LNPVFGKMFELEATLPGNSILKISVMDYDLLG 76 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCe---ec-cceeeEEECC-CCCccceEEEEEecCCCCCEEEEEEEECCCCC
Confidence 789999999998876 678999999998432 22 4678888887 99999999999988777789999999999998
Q ss_pred CCceEEEEEEECCCCC
Q psy12820 139 DSNFIGQATYPVYTNR 154 (156)
Q Consensus 139 ~~~~iG~~~i~l~~l~ 154 (156)
++++||++.+++++..
T Consensus 77 ~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 77 SDDLIGETVIDLEDRF 92 (124)
T ss_pred CCceeEEEEEeecccc
Confidence 9999999999997643
No 54
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.79 E-value=7.6e-19 Score=114.62 Aligned_cols=85 Identities=26% Similarity=0.394 Sum_probs=74.9
Q ss_pred EEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCC
Q psy12820 60 VLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG 138 (156)
Q Consensus 60 L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~ 138 (156)
|.|+|++|++|+..+ .+.+||||++.+.+ . ++||++++++ .||+|||+|.|.+..++...|.|+|+|++.
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-----~-~~kT~v~~~t-~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~-- 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK-----T-TQKSKVKERT-NNPVWEEGFTFLVRNPENQELEIEVKDDKT-- 72 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECC-----E-EEeCccccCC-CCCcccceEEEEeCCCCCCEEEEEEEECCC--
Confidence 789999999999875 67899999999853 3 7889998887 999999999999998777899999999875
Q ss_pred CCceEEEEEEECCCCC
Q psy12820 139 DSNFIGQATYPVYTNR 154 (156)
Q Consensus 139 ~~~~iG~~~i~l~~l~ 154 (156)
+++||++.+++.++.
T Consensus 73 -~~~iG~~~i~l~~l~ 87 (105)
T cd04050 73 -GKSLGSLTLPLSELL 87 (105)
T ss_pred -CCccEEEEEEHHHhh
Confidence 689999999998764
No 55
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.79 E-value=2.7e-18 Score=116.40 Aligned_cols=93 Identities=27% Similarity=0.443 Sum_probs=77.7
Q ss_pred EEEEEeeeeecccCC-CCCCCCEEEEEEecCC-CCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820 60 VLLRVLAARHLTRSG-RCTTSPFVEVEVLGAD-YDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF 137 (156)
Q Consensus 60 L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~-~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~ 137 (156)
|+|+|++|++|+..+ .+.+||||++.+.+.. .+...+.+|++++++ .||.|||+|.|.+... ...|.|+|||++..
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t-~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKT-LNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCC-CCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 789999999998876 6789999999987541 122236789999887 9999999999998653 45789999999999
Q ss_pred CCCceEEEEEEECCCCC
Q psy12820 138 GDSNFIGQATYPVYTNR 154 (156)
Q Consensus 138 ~~~~~iG~~~i~l~~l~ 154 (156)
+++++||++.++++++.
T Consensus 80 ~~~~~iG~~~i~l~~l~ 96 (133)
T cd04033 80 TRDDFLGQVEVPLNNLP 96 (133)
T ss_pred CCCCeeEEEEEEHHHCC
Confidence 89999999999988765
No 56
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.79 E-value=2.4e-18 Score=118.26 Aligned_cols=89 Identities=27% Similarity=0.461 Sum_probs=78.2
Q ss_pred EEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820 58 VKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF 137 (156)
Q Consensus 58 ~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~ 137 (156)
..|+|+|++|++|+..+.+.+||||++.+. .. +.+|++++++ .||+|||+|.|.+..+ ...+.|+|||++.+
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g-----~~-~~kT~vvk~t-~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~ 73 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLG-----NQ-KVKTRVIKKN-LNPVWNEELTLSVPNP-MAPLKLEVFDKDTF 73 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEEC-----CE-EEEeeeEcCC-CCCeecccEEEEecCC-CCEEEEEEEECCCC
Confidence 469999999999987766789999999973 23 7899999988 9999999999998876 56899999999999
Q ss_pred CCCceEEEEEEECCCCC
Q psy12820 138 GDSNFIGQATYPVYTNR 154 (156)
Q Consensus 138 ~~~~~iG~~~i~l~~l~ 154 (156)
+++++||++.+++..+.
T Consensus 74 ~~dd~iG~a~i~l~~l~ 90 (145)
T cd04038 74 SKDDSMGEAEIDLEPLV 90 (145)
T ss_pred CCCCEEEEEEEEHHHhh
Confidence 99999999999987753
No 57
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.78 E-value=1.3e-18 Score=118.39 Aligned_cols=93 Identities=20% Similarity=0.367 Sum_probs=75.6
Q ss_pred EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc--EEEEEEEec
Q psy12820 58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDE 134 (156)
Q Consensus 58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~--~l~~~V~d~ 134 (156)
..|+|+|++|++|+..+ .+.+||||++.+..... ...+++|++++++ .||+|||+|.|.+...++. .|.|+|||+
T Consensus 14 ~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~-~~~~~kT~v~~~t-~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~ 91 (135)
T cd08410 14 GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLK-LIKTKKTSCMRGT-IDPFYNESFSFKVPQEELENVSLVFTVYGH 91 (135)
T ss_pred CeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCc-ccceEcCccccCC-CCCccceeEEEeCCHHHhCCCEEEEEEEeC
Confidence 47999999999998875 67899999999853221 2226789998887 9999999999998654443 699999999
Q ss_pred CCCCCCceEEEEEEECCC
Q psy12820 135 DMFGDSNFIGQATYPVYT 152 (156)
Q Consensus 135 ~~~~~~~~iG~~~i~l~~ 152 (156)
+..+++++||++.+....
T Consensus 92 d~~~~~~~iG~~~l~~~~ 109 (135)
T cd08410 92 NVKSSNDFIGRIVIGQYS 109 (135)
T ss_pred CCCCCCcEEEEEEEcCcc
Confidence 999999999998876543
No 58
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.78 E-value=2.8e-18 Score=115.12 Aligned_cols=94 Identities=29% Similarity=0.441 Sum_probs=77.7
Q ss_pred eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCC---CccEEEEEEE
Q psy12820 57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNP---EMALLRFVCQ 132 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~---~~~~l~~~V~ 132 (156)
...|.|+|++|++|+..+ .+.+||||++.+... +.. +.+|++++++ .||+|||+|.|.+... ....|.|+||
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~--~~~-~~kT~v~~~t-~~P~Wne~f~f~~~~~~~l~~~~l~~~v~ 90 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPD--KKH-KLETKVKRKN-LNPHWNETFLFEGFPYEKLQQRVLYLQVL 90 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCceEEEEECCC--CCc-ceeeeeecCC-CCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence 357999999999998875 667999999998532 233 6899999988 9999999999974321 2347999999
Q ss_pred ecCCCCCCceEEEEEEECCCCC
Q psy12820 133 DEDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 133 d~~~~~~~~~iG~~~i~l~~l~ 154 (156)
|++..+++++||++.++++++.
T Consensus 91 d~d~~~~~~~iG~~~i~l~~l~ 112 (125)
T cd08386 91 DYDRFSRNDPIGEVSLPLNKVD 112 (125)
T ss_pred eCCCCcCCcEeeEEEEeccccc
Confidence 9999989999999999999875
No 59
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.78 E-value=1.5e-18 Score=118.14 Aligned_cols=95 Identities=22% Similarity=0.318 Sum_probs=78.2
Q ss_pred eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC--ccEEEEEEEe
Q psy12820 57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE--MALLRFVCQD 133 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~--~~~l~~~V~d 133 (156)
..+|.|+|++|++|+..+ .+.+||||++.+...+.... +.+|++++++ .||.|||+|.|.+.... ...|.|+|||
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~-~~kT~v~~~t-~~P~wne~F~f~i~~~~~~~~~l~~~v~d 91 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVE-KKKTVIKKRT-LNPVFNESFIFNIPLERLRETTLIITVMD 91 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccc-cccCcceeCC-CCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence 357999999999998765 67899999999864322223 6789999988 99999999999976433 3479999999
Q ss_pred cCCCCCCceEEEEEEECCCC
Q psy12820 134 EDMFGDSNFIGQATYPVYTN 153 (156)
Q Consensus 134 ~~~~~~~~~iG~~~i~l~~l 153 (156)
++..+++++||++.+++.+.
T Consensus 92 ~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 92 KDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCCCCcEeEEEEECCccC
Confidence 99999999999999998764
No 60
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.78 E-value=1.6e-18 Score=118.24 Aligned_cols=92 Identities=23% Similarity=0.317 Sum_probs=77.1
Q ss_pred EEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEecC
Q psy12820 58 VKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQDED 135 (156)
Q Consensus 58 ~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d~~ 135 (156)
.+|.|+|++|++|+..+.+.+||||++.+.+... ...++||++++++ .||+|||+|.|.+...++ ..|.|.||+++
T Consensus 15 ~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~-~~~~~kT~v~~~~-~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~ 92 (137)
T cd08409 15 NRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNK-VVKTKKTEVVDGA-ASPSFNESFSFKVTSRQLDTASLSLSVMQSG 92 (137)
T ss_pred CeEEEEEEEecCCCcccCCCCCeEEEEEEEECCE-EeeeeecccEeCC-CCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence 5799999999999877677799999999875422 2236789998887 999999999999875444 48999999999
Q ss_pred CCCCCceEEEEEEECC
Q psy12820 136 MFGDSNFIGQATYPVY 151 (156)
Q Consensus 136 ~~~~~~~iG~~~i~l~ 151 (156)
..+++++||++.++..
T Consensus 93 ~~~~~~~lG~v~ig~~ 108 (137)
T cd08409 93 GVRKSKLLGRVVLGPF 108 (137)
T ss_pred CCCCcceEEEEEECCc
Confidence 8889999999999854
No 61
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.78 E-value=5e-18 Score=114.26 Aligned_cols=90 Identities=18% Similarity=0.238 Sum_probs=74.6
Q ss_pred eEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCC
Q psy12820 57 RVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDM 136 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~ 136 (156)
...|+|+|++|++|+.. +.+||||+|.+.+ .. ..||++ +++ .||.|||+|.|.+..++...+.|.|||++.
T Consensus 3 ~~~L~V~Vi~A~~L~~~--~~~DPYv~v~l~~----~~-~~kT~v-~~~-~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~ 73 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK--HVPHPYCVISLNE----VK-VARTKV-REG-PNPVWSEEFVFDDLPPDVNSFTISLSNKAK 73 (126)
T ss_pred eeEEEEEEEEeeCCCCC--CCCCeeEEEEECC----Ee-EEEeec-CCC-CCCccCCEEEEecCCCCcCEEEEEEEECCC
Confidence 35799999999999874 4689999999842 22 567886 455 999999999998776666688999999999
Q ss_pred CCCCceEEEEEEECCCCCC
Q psy12820 137 FGDSNFIGQATYPVYTNRF 155 (156)
Q Consensus 137 ~~~~~~iG~~~i~l~~l~~ 155 (156)
.+++++||++.+|++++..
T Consensus 74 ~~~d~~iG~v~i~l~~l~~ 92 (126)
T cd08400 74 RSKDSEIAEVTVQLSKLQN 92 (126)
T ss_pred CCCCCeEEEEEEEHhHccC
Confidence 9999999999999987653
No 62
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.78 E-value=1.7e-18 Score=116.22 Aligned_cols=93 Identities=23% Similarity=0.297 Sum_probs=76.3
Q ss_pred eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEE-EeCCC--ccEEEEEEE
Q psy12820 57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT-VHNPE--MALLRFVCQ 132 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~-v~~~~--~~~l~~~V~ 132 (156)
..+|.|+|++|++|+..+ .+..||||++.+.+. ... ++||++++ + .||+|||+|.|+ +...+ ...|.|+||
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~--~~~-~~kTkv~~-~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~ 89 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPS--KKQ-RAKTKVQR-G-PNPVFNETFTFSRVEPEELNNMALRFRLY 89 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccC--Ccc-eeeccccc-C-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence 357999999999999875 567899999887643 233 77888765 4 899999999998 65433 348999999
Q ss_pred ecCCCCCCceEEEEEEECCCCC
Q psy12820 133 DEDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 133 d~~~~~~~~~iG~~~i~l~~l~ 154 (156)
|++..+++++||++.++|+++.
T Consensus 90 ~~~~~~~~~~lG~~~i~L~~l~ 111 (124)
T cd08389 90 GVERMRKERLIGEKVVPLSQLN 111 (124)
T ss_pred ECCCcccCceEEEEEEeccccC
Confidence 9999999999999999999874
No 63
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.78 E-value=1.7e-18 Score=115.71 Aligned_cols=84 Identities=26% Similarity=0.420 Sum_probs=73.8
Q ss_pred EEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCCC
Q psy12820 60 VLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGD 139 (156)
Q Consensus 60 L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~ 139 (156)
|+|+|++|++|+.. .+||||++.+.+ . +.||++++++ .||+|||+|.|.+..+....|.|+|||++.. +
T Consensus 2 L~V~Vi~a~~L~~~---~~Dpyv~v~l~~-----~-~~kT~v~~~t-~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~ 70 (121)
T cd08378 2 LYVRVVKARGLPAN---SNDPVVEVKLGN-----Y-KGSTKAIERT-SNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-K 70 (121)
T ss_pred EEEEEEEecCCCcc---cCCCEEEEEECC-----c-cccccccCCC-CCCccceEEEEEcCCCcCCEEEEEEEeCCCC-c
Confidence 78999999999877 689999999842 3 7799999988 9999999999998766667899999999877 6
Q ss_pred CceEEEEEEECCCCC
Q psy12820 140 SNFIGQATYPVYTNR 154 (156)
Q Consensus 140 ~~~iG~~~i~l~~l~ 154 (156)
+++||++.++++++.
T Consensus 71 ~~~lG~~~i~l~~l~ 85 (121)
T cd08378 71 DDFLGGVCFDLSEVP 85 (121)
T ss_pred CceeeeEEEEhHhCc
Confidence 799999999998874
No 64
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.78 E-value=4.1e-18 Score=112.19 Aligned_cols=87 Identities=28% Similarity=0.332 Sum_probs=75.2
Q ss_pred EEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC----ccEEEEEEEe
Q psy12820 58 VKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE----MALLRFVCQD 133 (156)
Q Consensus 58 ~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~----~~~l~~~V~d 133 (156)
..|+|+|++|++|+ .+.+||||++.+.+ . +++|++++++ .||.|||+|.|.+..+. ...|.|+|||
T Consensus 4 ~~l~V~v~~a~~L~---~~~~dpyv~v~~~~-----~-~~kT~~~~~t-~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d 73 (111)
T cd04011 4 FQVRVRVIEARQLV---GGNIDPVVKVEVGG-----Q-KKYTSVKKGT-NCPFYNEYFFFNFHESPDELFDKIIKISVYD 73 (111)
T ss_pred EEEEEEEEEcccCC---CCCCCCEEEEEECC-----E-eeeeeEEecc-CCCccccEEEEecCCCHHHHhcCeEEEEEEc
Confidence 57999999999998 56799999999852 3 6789999888 99999999999976543 2489999999
Q ss_pred cCCCCCCceEEEEEEECCCCC
Q psy12820 134 EDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 134 ~~~~~~~~~iG~~~i~l~~l~ 154 (156)
++..+++++||++.++++++.
T Consensus 74 ~~~~~~~~~iG~~~i~l~~v~ 94 (111)
T cd04011 74 SRSLRSDTLIGSFKLDVGTVY 94 (111)
T ss_pred CcccccCCccEEEEECCcccc
Confidence 999888999999999999874
No 65
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.77 E-value=4e-18 Score=114.00 Aligned_cols=95 Identities=25% Similarity=0.414 Sum_probs=79.4
Q ss_pred eEEEEEEEeeeeecccCC--CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEE
Q psy12820 57 RVKVLLRVLAARHLTRSG--RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQ 132 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~--~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~ 132 (156)
...|.|+|++|++|+..+ .+.+||||++++... +.. ..+|++++++ +||+|||+|.|.+...++ ..|.|.||
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~--~~~-~~~T~v~~~~-~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPD--ERR-SLQSKVKRKT-QNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeC--CCC-ceEeeeEcCC-CCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 357999999999998875 568899999998532 233 6789998888 999999999999875433 47999999
Q ss_pred ecCCCCCCceEEEEEEECCCCCC
Q psy12820 133 DEDMFGDSNFIGQATYPVYTNRF 155 (156)
Q Consensus 133 d~~~~~~~~~iG~~~i~l~~l~~ 155 (156)
|++..+++++||++.++|+++..
T Consensus 89 d~~~~~~~~~iG~~~i~L~~l~~ 111 (123)
T cd08390 89 DVDRFSRHCIIGHVLFPLKDLDL 111 (123)
T ss_pred ECCcCCCCcEEEEEEEeccceec
Confidence 99988889999999999998753
No 66
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.77 E-value=2.4e-18 Score=116.91 Aligned_cols=94 Identities=23% Similarity=0.340 Sum_probs=76.9
Q ss_pred eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEEe
Q psy12820 57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQD 133 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~d 133 (156)
..+|+|+|++|++|+..+ .+.+||||++.+...+.... +++|++++++ .||.|||+|.|.+...+. ..|.|+|||
T Consensus 13 ~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~-~~kT~v~~~t-~nP~wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 13 AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLK-KKKTSVKKNT-LNPTYNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccc-eecCCcccCC-CCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 357999999999999876 67899999999864322223 6788888877 999999999998764333 368999999
Q ss_pred cCCCCCCceEEEEEEECCC
Q psy12820 134 EDMFGDSNFIGQATYPVYT 152 (156)
Q Consensus 134 ~~~~~~~~~iG~~~i~l~~ 152 (156)
++..+++++||++.+++..
T Consensus 91 ~~~~~~~~~IG~~~l~~~~ 109 (134)
T cd08403 91 YDRVGHNELIGVCRVGPNA 109 (134)
T ss_pred CCCCCCCceeEEEEECCCC
Confidence 9999999999999998763
No 67
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.77 E-value=6.9e-18 Score=113.35 Aligned_cols=91 Identities=21% Similarity=0.367 Sum_probs=77.1
Q ss_pred EEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820 59 KVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF 137 (156)
Q Consensus 59 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~ 137 (156)
.|+|+|++|++|+..+ .+.+||||++.+.+ ......||++++++ .||.|||+|.|.+..+....|.|+|||++..
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~---~~~~~~kT~~~~~t-~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~ 77 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTN---GKRRIAKTRTIYDT-LNPRWDEEFELEVPAGEPLWISATVWDRSFV 77 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECC---CCeeeecccEecCC-CCCcccceEEEEcCCCCCCEEEEEEEECCCC
Confidence 5899999999998875 67899999998642 11226799999988 9999999999998876557899999999988
Q ss_pred CCCceEEEEEEECCCC
Q psy12820 138 GDSNFIGQATYPVYTN 153 (156)
Q Consensus 138 ~~~~~iG~~~i~l~~l 153 (156)
+++++||++.++++.+
T Consensus 78 ~~~~~iG~~~i~l~~~ 93 (126)
T cd04043 78 GKHDLCGRASLKLDPK 93 (126)
T ss_pred CCCceEEEEEEecCHH
Confidence 8899999999998764
No 68
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.77 E-value=6.9e-18 Score=112.81 Aligned_cols=88 Identities=18% Similarity=0.274 Sum_probs=75.2
Q ss_pred EEEEEeeeeecccCC--CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820 60 VLLRVLAARHLTRSG--RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF 137 (156)
Q Consensus 60 L~v~v~~a~~L~~~~--~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~ 137 (156)
|+|+|++|++|+..+ .+.+||||+|.+. +.. ..+|++++++ .||+|||+|.|.+... ...|.|.|||++..
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~----~~~-~~kT~v~~kt-~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~ 74 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD----QEE-VFRTKTVEKS-LCPFFGEDFYFEIPRT-FRHLSFYIYDRDVL 74 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC----Ccc-EEEeeEEECC-CCCccCCeEEEEcCCC-CCEEEEEEEECCCC
Confidence 689999999998863 4688999999883 222 6789999998 9999999999998753 36899999999999
Q ss_pred CCCceEEEEEEECCCCC
Q psy12820 138 GDSNFIGQATYPVYTNR 154 (156)
Q Consensus 138 ~~~~~iG~~~i~l~~l~ 154 (156)
+++++||.+.++++++.
T Consensus 75 ~~~~~iG~~~i~l~~l~ 91 (121)
T cd08401 75 RRDSVIGKVAIKKEDLH 91 (121)
T ss_pred CCCceEEEEEEEHHHcc
Confidence 99999999999988774
No 69
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.76 E-value=1.9e-18 Score=115.95 Aligned_cols=92 Identities=21% Similarity=0.226 Sum_probs=77.9
Q ss_pred EEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC----ccEEEEEEEe
Q psy12820 59 KVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE----MALLRFVCQD 133 (156)
Q Consensus 59 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~----~~~l~~~V~d 133 (156)
+|+|+|++|++|+..+ .+..||||+|++.+ .. +.+|+++.+++.||.|||+|.|.+..++ ...|.|+|||
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~----~~-~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d 75 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP----SH-KQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYC 75 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC----Cc-ccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEE
Confidence 3899999999999876 67899999999853 23 6788887665599999999999988764 4689999999
Q ss_pred cCCCCCCceEEEEEEECCCCCC
Q psy12820 134 EDMFGDSNFIGQATYPVYTNRF 155 (156)
Q Consensus 134 ~~~~~~~~~iG~~~i~l~~l~~ 155 (156)
++..+++++||++.+++.++..
T Consensus 76 ~~~~~~~~~lG~~~i~l~~l~~ 97 (125)
T cd04051 76 ERPSLGDKLIGEVRVPLKDLLD 97 (125)
T ss_pred CCCCCCCCcEEEEEEEHHHhhc
Confidence 9988889999999999988653
No 70
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.76 E-value=1.4e-17 Score=111.44 Aligned_cols=96 Identities=25% Similarity=0.443 Sum_probs=78.3
Q ss_pred eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEE-EeCCC--ccEEEEEEE
Q psy12820 57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT-VHNPE--MALLRFVCQ 132 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~-v~~~~--~~~l~~~V~ 132 (156)
..+|+|+|++|++|+..+ .+.+||||++.+.+...+.. +.+|++++++ .||.|||+|.|. +...+ ...+.|+||
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~-~~rT~v~~~~-~~P~Wne~f~f~~~~~~~~~~~~l~~~v~ 91 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKAT-KLRTKTVHKT-RNPEFNETLTYYGITEEDIQRKTLRLLVL 91 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCC-ceeeeeecCC-CCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence 357999999999998765 57899999999865433333 7899999988 999999999996 33222 248999999
Q ss_pred ecCCCCCCceEEEEEEECCCCCC
Q psy12820 133 DEDMFGDSNFIGQATYPVYTNRF 155 (156)
Q Consensus 133 d~~~~~~~~~iG~~~i~l~~l~~ 155 (156)
|++.. .+++||++.+++++|..
T Consensus 92 d~~~~-~~~~iG~~~i~l~~l~~ 113 (123)
T cd04035 92 DEDRF-GNDFLGETRIPLKKLKP 113 (123)
T ss_pred EcCCc-CCeeEEEEEEEcccCCC
Confidence 99887 78999999999998753
No 71
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.76 E-value=9.3e-18 Score=113.52 Aligned_cols=96 Identities=23% Similarity=0.372 Sum_probs=80.7
Q ss_pred eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC-ccEEEEEEEec
Q psy12820 57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE-MALLRFVCQDE 134 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~-~~~l~~~V~d~ 134 (156)
...|+|+|++|++|+..+ .+.+||||+|.+.+.+.+.. +++|++++++ .+|.|||+|.|.+...+ ...|.|.|||+
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~-~~rT~v~~~~-~~P~wne~f~~~~~~~~~~~~l~v~v~d~ 89 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNET-KQKTKTIKKT-LNPVWNETFTFDLKPADKDRRLSIEVWDW 89 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCc-eecceeecCC-CCCCccceEEEeCCchhcCCEEEEEEEEC
Confidence 367999999999998765 56799999999875443334 7899999988 99999999999977553 34899999999
Q ss_pred CCCCCCceEEEEEEECCCCC
Q psy12820 135 DMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 135 ~~~~~~~~iG~~~i~l~~l~ 154 (156)
+..+++++||++.++++++.
T Consensus 90 ~~~~~~~~iG~~~~~l~~l~ 109 (131)
T cd04026 90 DRTTRNDFMGSLSFGVSELI 109 (131)
T ss_pred CCCCCcceeEEEEEeHHHhC
Confidence 98888899999999988764
No 72
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.76 E-value=9.6e-18 Score=112.80 Aligned_cols=89 Identities=22% Similarity=0.506 Sum_probs=77.3
Q ss_pred EEEEEEeeeeecccCC---CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecC
Q psy12820 59 KVLLRVLAARHLTRSG---RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDED 135 (156)
Q Consensus 59 ~L~v~v~~a~~L~~~~---~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~ 135 (156)
.|+|+|++|++|+..+ .+.+||||++.+. .. +.+|++++++ .||.|||+|.|.+..+....|.|+|||++
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~-----~~-~~kT~~~~~t-~~P~Wne~f~~~~~~~~~~~l~i~v~d~~ 74 (128)
T cd04024 2 VLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG-----AQ-RFKTQTIPNT-LNPKWNYWCEFPIFSAQNQLLKLILWDKD 74 (128)
T ss_pred EEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC-----CE-EEecceecCC-cCCccCCcEEEEecCCCCCEEEEEEEECC
Confidence 5899999999998764 4689999999873 23 7899999988 99999999999998755679999999999
Q ss_pred CCCCCceEEEEEEECCCCC
Q psy12820 136 MFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 136 ~~~~~~~iG~~~i~l~~l~ 154 (156)
..+++++||++.++++++.
T Consensus 75 ~~~~~~~lG~~~i~l~~~~ 93 (128)
T cd04024 75 RFAGKDYLGEFDIALEEVF 93 (128)
T ss_pred CCCCCCcceEEEEEHHHhh
Confidence 8888999999999998764
No 73
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.76 E-value=1.4e-17 Score=111.56 Aligned_cols=87 Identities=24% Similarity=0.387 Sum_probs=74.7
Q ss_pred EEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCC
Q psy12820 60 VLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG 138 (156)
Q Consensus 60 L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~ 138 (156)
|+|+|++|++|+..+ .+.+||||++.+.+ .. .+||++++++ .||.|||+|.|.+.. ...|.|+|||++..+
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~----~~-~~kT~v~~~t-~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~ 73 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG----GQ-THSTDVAKKT-LDPKWNEHFDLTVGP--SSIITIQVFDQKKFK 73 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECC----cc-ceEccEEcCC-CCCcccceEEEEeCC--CCEEEEEEEECCCCC
Confidence 789999999998776 67899999999742 33 7899999888 999999999999864 568999999998877
Q ss_pred C--CceEEEEEEECCCCC
Q psy12820 139 D--SNFIGQATYPVYTNR 154 (156)
Q Consensus 139 ~--~~~iG~~~i~l~~l~ 154 (156)
+ +++||++.++++++.
T Consensus 74 ~~~d~~lG~~~i~l~~l~ 91 (123)
T cd08382 74 KKDQGFLGCVRIRANAVL 91 (123)
T ss_pred CCCCceEeEEEEEHHHcc
Confidence 5 479999999998874
No 74
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.76 E-value=5.4e-18 Score=113.11 Aligned_cols=90 Identities=23% Similarity=0.286 Sum_probs=75.0
Q ss_pred EeeeeecccCC-CCCCCCEEEEEEecCCC-CCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCC----C
Q psy12820 64 VLAARHLTRSG-RCTTSPFVEVEVLGADY-DTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDM----F 137 (156)
Q Consensus 64 v~~a~~L~~~~-~~~~dpyv~v~l~~~~~-~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~----~ 137 (156)
.++|++|+..+ .+.+||||++.+.+... ......+|++++++ .||+|+|+|.|.+..++...|.|+|||++. .
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t-~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNN-LNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCC-CCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 47899998766 67899999999976531 11226899999998 999999999998776666789999999997 7
Q ss_pred CCCceEEEEEEECCCCC
Q psy12820 138 GDSNFIGQATYPVYTNR 154 (156)
Q Consensus 138 ~~~~~iG~~~i~l~~l~ 154 (156)
+++++||++.+++++|.
T Consensus 85 ~~~d~iG~~~i~l~~l~ 101 (120)
T cd04048 85 SDHDFLGEAECTLGEIV 101 (120)
T ss_pred CCCcEEEEEEEEHHHHh
Confidence 88999999999998865
No 75
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.75 E-value=1.5e-17 Score=111.55 Aligned_cols=90 Identities=28% Similarity=0.438 Sum_probs=76.2
Q ss_pred EEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC---ccEEEEEEEec
Q psy12820 59 KVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE---MALLRFVCQDE 134 (156)
Q Consensus 59 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~---~~~l~~~V~d~ 134 (156)
.|+|+|++|++|+..+ .+.+||||++.+.+ . .++|+++++++.||.|||+|.|.+..+. ...|.|+|||+
T Consensus 2 ~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~-----~-~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 75 (124)
T cd04049 2 TLEVLLISAKGLQDTDFLGKIDPYVIIQCRT-----Q-ERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDK 75 (124)
T ss_pred eEEEEEEecCCCCCCCCCCCcCceEEEEECC-----E-eeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEEC
Confidence 6899999999998765 66899999999732 2 5688887754499999999999998763 45899999999
Q ss_pred CCCCCCceEEEEEEECCCCC
Q psy12820 135 DMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 135 ~~~~~~~~iG~~~i~l~~l~ 154 (156)
+..+++++||++.+++.++.
T Consensus 76 ~~~~~d~~iG~~~i~l~~l~ 95 (124)
T cd04049 76 DNFSDDDFIGEATIHLKGLF 95 (124)
T ss_pred ccCCCCCeEEEEEEEhHHhh
Confidence 98888999999999998864
No 76
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.75 E-value=1.9e-17 Score=110.48 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=71.1
Q ss_pred EEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820 58 VKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF 137 (156)
Q Consensus 58 ~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~ 137 (156)
..|.|+|++|++|+.. +..||||++.+. .. +.+|+++++ .||.|||.|.|.+..... .|.++|||++.+
T Consensus 2 ~~L~V~Vv~Ar~L~~~--~~~dPYV~Ik~g-----~~-k~kT~v~~~--~nP~WnE~F~F~~~~~~~-~L~v~V~dkd~~ 70 (127)
T cd08394 2 SLLCVLVKKAKLDGAP--DKFNTYVTLKVQ-----NV-KSTTIAVRG--SQPCWEQDFMFEINRLDL-GLVIELWNKGLI 70 (127)
T ss_pred ceEEEEEEEeeCCCCC--CCCCCeEEEEEC-----CE-EeEeeECCC--CCCceeeEEEEEEcCCCC-EEEEEEEeCCCc
Confidence 4799999999999754 356999999983 23 778888866 499999999999976544 499999999866
Q ss_pred CCCceEEEEEEECCCCCC
Q psy12820 138 GDSNFIGQATYPVYTNRF 155 (156)
Q Consensus 138 ~~~~~iG~~~i~l~~l~~ 155 (156)
.||+||++.+||+++..
T Consensus 71 -~DD~lG~v~i~L~~v~~ 87 (127)
T cd08394 71 -WDTLVGTVWIPLSTIRQ 87 (127)
T ss_pred -CCCceEEEEEEhHHccc
Confidence 78999999999998753
No 77
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.75 E-value=2.4e-17 Score=110.21 Aligned_cols=88 Identities=20% Similarity=0.367 Sum_probs=74.8
Q ss_pred EEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCC
Q psy12820 60 VLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG 138 (156)
Q Consensus 60 L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~ 138 (156)
|.|+|++|++|+..+ .+.+||||++.+.+ .. ..||++++++ .||.|||.|.|.+... ...|.|.|||++..+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~----~~-~~kT~v~~~t-~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~ 74 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN----EV-IIRTATVWKT-LNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLS 74 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECC----Ee-eeeeeeEcCC-CCCcccceEEEeeCCC-CCEEEEEEEECCCCC
Confidence 789999999998876 67899999998742 22 5699999998 9999999999988643 368999999999999
Q ss_pred CCceEEEEEEECCCCC
Q psy12820 139 DSNFIGQATYPVYTNR 154 (156)
Q Consensus 139 ~~~~iG~~~i~l~~l~ 154 (156)
++++||++.++++.+.
T Consensus 75 ~d~~iG~~~~~~~~~~ 90 (121)
T cd04054 75 RDDVIGKVSLTREVIS 90 (121)
T ss_pred CCCEEEEEEEcHHHhc
Confidence 9999999999976553
No 78
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.75 E-value=2.2e-17 Score=108.86 Aligned_cols=84 Identities=21% Similarity=0.339 Sum_probs=68.5
Q ss_pred EEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEec-----
Q psy12820 60 VLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDE----- 134 (156)
Q Consensus 60 L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~----- 134 (156)
|.|+|.+|++|+ +.+||||++++.+.. +...+.||++++++ +||+|||+|.|.+.. ...|++.|||+
T Consensus 1 L~V~V~~A~~L~----~~sDPYV~l~v~~~~-~~~~~~KTk~i~~T-lnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~ 72 (118)
T cd08686 1 LNVIVHSAQGFK----QSANLYCTLEVDSFG-YFVKKAKTRVCRDT-TEPNWNEEFEIELEG--SQTLRILCYEKCYSKV 72 (118)
T ss_pred CEEEEEeCCCCC----CCCCCEEEEEEcCcc-ccceeeeeeeecCC-CCCccceEEEEEeCC--CCEEEEEEEEcccccc
Confidence 579999999995 458999999875432 21237899999998 999999999999863 45899999998
Q ss_pred --CCCCCCceEEEEEEECC
Q psy12820 135 --DMFGDSNFIGQATYPVY 151 (156)
Q Consensus 135 --~~~~~~~~iG~~~i~l~ 151 (156)
|..++|+++|.+.+.|+
T Consensus 73 ~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 73 KLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred cccccCcccEEEEEEEEEC
Confidence 46678999998888764
No 79
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.74 E-value=2.5e-17 Score=109.52 Aligned_cols=88 Identities=24% Similarity=0.489 Sum_probs=75.3
Q ss_pred EEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820 59 KVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF 137 (156)
Q Consensus 59 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~ 137 (156)
.|+|+|++|++|+..+ .+.+||||++.+.+ . ..+|++++++ .||.|+|+|.|.+... ...+.|+|||++..
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~-~~~T~~~~~t-~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~ 73 (119)
T cd08377 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVN-----A-RLQTHTIYKT-LNPEWNKIFTFPIKDI-HDVLEVTVYDEDKD 73 (119)
T ss_pred EEEEEEEeeeCCCCCCCCCCCCcEEEEEECC-----E-eeecceecCC-cCCccCcEEEEEecCc-CCEEEEEEEECCCC
Confidence 6899999999998876 56789999999742 2 5799999988 9999999999997643 36899999999988
Q ss_pred CCCceEEEEEEECCCCC
Q psy12820 138 GDSNFIGQATYPVYTNR 154 (156)
Q Consensus 138 ~~~~~iG~~~i~l~~l~ 154 (156)
+++++||++.+++.++.
T Consensus 74 ~~~~~iG~~~~~l~~~~ 90 (119)
T cd08377 74 KKPEFLGKVAIPLLSIK 90 (119)
T ss_pred CCCceeeEEEEEHHHCC
Confidence 88999999999988764
No 80
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.74 E-value=2.4e-17 Score=108.97 Aligned_cols=89 Identities=28% Similarity=0.431 Sum_probs=76.0
Q ss_pred EEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCC
Q psy12820 60 VLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG 138 (156)
Q Consensus 60 L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~ 138 (156)
|+|+|++|++|+..+ .+.+||||++.+.+ .. ..+|+++.++ .+|.|||+|.|.+.......+.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~----~~-~~~T~v~~~~-~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~ 74 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNG----EK-VFKTKTIKKT-LNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG 74 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECC----Cc-ceeeceecCC-CCCcccccEEEEeccCCCCEEEEEEEeCCCCC
Confidence 578999999998765 56789999999843 22 5789998887 99999999999988665678999999999888
Q ss_pred CCceEEEEEEECCCCC
Q psy12820 139 DSNFIGQATYPVYTNR 154 (156)
Q Consensus 139 ~~~~iG~~~i~l~~l~ 154 (156)
++++||++.+++.++.
T Consensus 75 ~~~~iG~~~~~l~~l~ 90 (115)
T cd04040 75 KDDLLGSAYIDLSDLE 90 (115)
T ss_pred CCCceEEEEEEHHHcC
Confidence 8999999999988764
No 81
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.74 E-value=4.3e-17 Score=110.94 Aligned_cols=89 Identities=21% Similarity=0.406 Sum_probs=72.7
Q ss_pred EEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCC---------CccEEE
Q psy12820 59 KVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNP---------EMALLR 128 (156)
Q Consensus 59 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~---------~~~~l~ 128 (156)
.|+|+|++|++|+..+ .+.+||||+|.+.+ . +.+|++++++ .||.|||+|.|.+... +...+.
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~-----~-~~kT~v~~~t-~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~ 74 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN-----Q-SQETEVIKET-LSPTWDQTLIFDEVELYGSPEEIAQNPPLVV 74 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECC-----e-eeEeeeEcCC-CCCccCcEEEEeeeeccCChHHhhcCCCEEE
Confidence 6899999999998866 67899999999742 2 7899999988 9999999999974321 124789
Q ss_pred EEEEecCCCCCCceEEEEEE-ECCCCC
Q psy12820 129 FVCQDEDMFGDSNFIGQATY-PVYTNR 154 (156)
Q Consensus 129 ~~V~d~~~~~~~~~iG~~~i-~l~~l~ 154 (156)
|+|||++..+++++||++.+ |+..++
T Consensus 75 v~V~d~d~~~~d~~iG~~~i~~~~~~~ 101 (135)
T cd04017 75 VELFDQDSVGKDEFLGRSVAKPLVKLD 101 (135)
T ss_pred EEEEeCcCCCCCccceEEEeeeeeecc
Confidence 99999999999999999986 544443
No 82
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.74 E-value=1.8e-17 Score=110.43 Aligned_cols=88 Identities=25% Similarity=0.396 Sum_probs=75.6
Q ss_pred EEEEEEeeeeecccCCC-------CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEE
Q psy12820 59 KVLLRVLAARHLTRSGR-------CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVC 131 (156)
Q Consensus 59 ~L~v~v~~a~~L~~~~~-------~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V 131 (156)
.|+|+|++|++|+..+. +.+||||++.+.+ . ..+|++++++ .||.|||+|.|.+..+....|.|+|
T Consensus 2 ~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~-----~-~~kT~~~~~t-~~P~W~e~f~~~v~~~~~~~l~i~v 74 (121)
T cd08391 2 VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-----Q-TFKSKVIKEN-LNPKWNEVYEAVVDEVPGQELEIEL 74 (121)
T ss_pred eEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC-----E-eEEccccCCC-CCCcccceEEEEeCCCCCCEEEEEE
Confidence 48999999999987652 5789999999842 3 7899999887 9999999999998766667999999
Q ss_pred EecCCCCCCceEEEEEEECCCCC
Q psy12820 132 QDEDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 132 ~d~~~~~~~~~iG~~~i~l~~l~ 154 (156)
||++.. ++++||++.++++++.
T Consensus 75 ~d~~~~-~~~~iG~~~i~l~~l~ 96 (121)
T cd08391 75 FDEDPD-KDDFLGRLSIDLGSVE 96 (121)
T ss_pred EecCCC-CCCcEEEEEEEHHHhc
Confidence 999887 7899999999987764
No 83
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.74 E-value=2.5e-17 Score=112.40 Aligned_cols=92 Identities=25% Similarity=0.344 Sum_probs=77.2
Q ss_pred EEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCC---------------Cc
Q psy12820 60 VLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNP---------------EM 124 (156)
Q Consensus 60 L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~---------------~~ 124 (156)
|+|+|++|++|+....+.+||||++.+... .... +++|++++++ .+|.|+|+|.|.+... ..
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~-~~~~-~~rT~vv~~t-~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~ 77 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYS-SKTD-TKRTKVKKKT-NNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEK 77 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecC-CcCC-eeccceeeCC-CCCCcceEEEEEccccccccccccccccccccc
Confidence 578999999998765678999999998642 2233 7899999987 9999999999998765 33
Q ss_pred cEEEEEEEecCCCCCCceEEEEEEECCCCC
Q psy12820 125 ALLRFVCQDEDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 125 ~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~ 154 (156)
..|.|+|||++..+++++||++.+++.++.
T Consensus 78 ~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~ 107 (137)
T cd08675 78 SELRVELWHASMVSGDDFLGEVRIPLQGLQ 107 (137)
T ss_pred cEEEEEEEcCCcCcCCcEEEEEEEehhhcc
Confidence 589999999998888999999999998864
No 84
>KOG0696|consensus
Probab=99.74 E-value=1.2e-18 Score=135.07 Aligned_cols=96 Identities=21% Similarity=0.395 Sum_probs=83.8
Q ss_pred eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc-EEEEEEEec
Q psy12820 57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA-LLRFVCQDE 134 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~-~l~~~V~d~ 134 (156)
...|+|+|..|++|-+++ +|.+||||++.+...+.... ++||++++.+ +||+|||+|.|.+...+.. .|.++||||
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~s-KqKTkTik~~-LNP~wNEtftf~Lkp~DkdrRlsiEvWDW 256 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNES-KQKTKTIKAT-LNPVWNETFTFKLKPSDKDRRLSIEVWDW 256 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchh-hhhhhhhhhh-cCccccceeEEecccccccceeEEEEecc
Confidence 457889999999998887 89999999999987654444 8999999999 9999999999998865553 888999999
Q ss_pred CCCCCCceEEEEEEECCCCC
Q psy12820 135 DMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 135 ~~~~~~~~iG~~~i~l~~l~ 154 (156)
|..+++||+|..++.+++|.
T Consensus 257 DrTsRNDFMGslSFgisEl~ 276 (683)
T KOG0696|consen 257 DRTSRNDFMGSLSFGISELQ 276 (683)
T ss_pred cccccccccceecccHHHHh
Confidence 99999999999999888764
No 85
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.74 E-value=1.7e-17 Score=112.32 Aligned_cols=93 Identities=27% Similarity=0.386 Sum_probs=78.5
Q ss_pred EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC--ccEEEEEEEec
Q psy12820 58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE--MALLRFVCQDE 134 (156)
Q Consensus 58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~--~~~l~~~V~d~ 134 (156)
.+|.|+|++|++|+..+ .+..||||++.+.+...... +.+|++++++ .||.|||+|.|.+.... ...|.|+|||.
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~-~~~T~~~~~~-~~P~wne~f~f~i~~~~l~~~~l~~~v~d~ 91 (134)
T cd00276 14 ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLK-KKKTSVKKGT-LNPVFNEAFSFDVPAEQLEEVSLVITVVDK 91 (134)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEee-eecCcceecC-CCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence 57999999999999875 67899999999875432222 6789998887 99999999999987654 36899999999
Q ss_pred CCCCCCceEEEEEEECCC
Q psy12820 135 DMFGDSNFIGQATYPVYT 152 (156)
Q Consensus 135 ~~~~~~~~iG~~~i~l~~ 152 (156)
+..+++++||++.+++++
T Consensus 92 ~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 92 DSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred CCCCCCceeEEEEECCCC
Confidence 988888999999999987
No 86
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.74 E-value=3.8e-17 Score=109.23 Aligned_cols=91 Identities=23% Similarity=0.277 Sum_probs=76.7
Q ss_pred EEEEEEEeeeeecccCC--CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecC
Q psy12820 58 VKVLLRVLAARHLTRSG--RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDED 135 (156)
Q Consensus 58 ~~L~v~v~~a~~L~~~~--~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~ 135 (156)
..|+|+|++|++|+..+ .+.+||||++.+.+. .. ..+|++++++ .||.|||.|.|.+. +....|.|+|||++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~---~~-~~kT~~~~~~-~~P~Wne~~~~~v~-~~~~~l~~~v~d~~ 75 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR---RE-LARTKVKKDT-SNPVWNETKYILVN-SLTEPLNLTVYDFN 75 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC---Cc-ceEeeeecCC-CCCcceEEEEEEeC-CCCCEEEEEEEecC
Confidence 36899999999998643 456899999998531 23 7899999887 99999999999887 44568999999999
Q ss_pred CCCCCceEEEEEEECCCCC
Q psy12820 136 MFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 136 ~~~~~~~iG~~~i~l~~l~ 154 (156)
..+++++||++.+++.++.
T Consensus 76 ~~~~d~~iG~~~~~l~~l~ 94 (124)
T cd04044 76 DKRKDKLIGTAEFDLSSLL 94 (124)
T ss_pred CCCCCceeEEEEEEHHHhc
Confidence 8888999999999998764
No 87
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.74 E-value=4.5e-17 Score=110.38 Aligned_cols=90 Identities=20% Similarity=0.262 Sum_probs=75.6
Q ss_pred EEEEEEEeeeeecccCCC-----------CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccE
Q psy12820 58 VKVLLRVLAARHLTRSGR-----------CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMAL 126 (156)
Q Consensus 58 ~~L~v~v~~a~~L~~~~~-----------~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~ 126 (156)
..|+|+|++|++|+..+. +.+||||++.+.+ .. ..+|++++++ .||.|||+|.|.+. +...
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~----~~-~~kT~~~~~t-~~P~Wne~f~~~v~--~~~~ 75 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD----TH-IGKTSTKPKT-NSPVWNEEFTTEVH--NGRN 75 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC----EE-EeEEeEcCCC-CCCCcceeEEEEcC--CCCE
Confidence 579999999999987653 5789999999842 22 4688888887 99999999999986 3478
Q ss_pred EEEEEEecCCCCCCceEEEEEEECCCCCC
Q psy12820 127 LRFVCQDEDMFGDSNFIGQATYPVYTNRF 155 (156)
Q Consensus 127 l~~~V~d~~~~~~~~~iG~~~i~l~~l~~ 155 (156)
|.|.|||++..+.+++||++.++|+++..
T Consensus 76 l~~~v~d~~~~~~~~~iG~~~i~l~~l~~ 104 (132)
T cd04014 76 LELTVFHDAAIGPDDFVANCTISFEDLIQ 104 (132)
T ss_pred EEEEEEeCCCCCCCceEEEEEEEhHHhcc
Confidence 99999999988888999999999987753
No 88
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.73 E-value=4.1e-17 Score=108.90 Aligned_cols=89 Identities=25% Similarity=0.326 Sum_probs=76.1
Q ss_pred EEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820 59 KVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF 137 (156)
Q Consensus 59 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~ 137 (156)
.|+|+|++|++|+..+ .+.+||||++.+.+ .. +.+|++++++ .||.|||+|.|.+..+. ..|.|+|||++..
T Consensus 2 ~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~----~~-~~kT~~~~~t-~~P~Wne~f~~~v~~~~-~~L~v~v~d~~~~ 74 (120)
T cd04045 2 VLRLHIRKANDLKNLEGVGKIDPYVRVLVNG----IV-KGRTVTISNT-LNPVWDEVLYVPVTSPN-QKITLEVMDYEKV 74 (120)
T ss_pred eEEEEEEeeECCCCccCCCCcCCEEEEEECC----EE-eeceeEECCC-cCCccCceEEEEecCCC-CEEEEEEEECCCC
Confidence 5889999999999875 67899999999732 22 6788888887 99999999999887653 6899999999999
Q ss_pred CCCceEEEEEEECCCCC
Q psy12820 138 GDSNFIGQATYPVYTNR 154 (156)
Q Consensus 138 ~~~~~iG~~~i~l~~l~ 154 (156)
+++++||++.+++.++.
T Consensus 75 ~~d~~IG~~~~~l~~l~ 91 (120)
T cd04045 75 GKDRSLGSVEINVSDLI 91 (120)
T ss_pred CCCCeeeEEEEeHHHhh
Confidence 99999999999987764
No 89
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.73 E-value=6.2e-17 Score=109.05 Aligned_cols=88 Identities=34% Similarity=0.502 Sum_probs=73.5
Q ss_pred EEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC
Q psy12820 59 KVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF 137 (156)
Q Consensus 59 ~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~ 137 (156)
+|+|+|++|++|+..+ .+.+||||++.+. .. +.+|++++++ .||.|||+|.|.+..+ ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~-~~kT~~v~~t-~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~ 73 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG-----KT-KKRTKTIPQN-LNPVWNEKFHFECHNS-SDRIKVRVWDEDDD 73 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEEC-----CE-eeecceecCC-CCCccceEEEEEecCC-CCEEEEEEEECCCC
Confidence 6899999999999876 6788999999973 22 6789999888 9999999999988654 35799999998853
Q ss_pred -----------CCCceEEEEEEECCCCC
Q psy12820 138 -----------GDSNFIGQATYPVYTNR 154 (156)
Q Consensus 138 -----------~~~~~iG~~~i~l~~l~ 154 (156)
+.+++||++.+++.++.
T Consensus 74 ~~~~~~~~~~~~~~~~iG~~~i~l~~~~ 101 (127)
T cd04027 74 IKSRLKQKFTRESDDFLGQTIIEVRTLS 101 (127)
T ss_pred cccccceeccccCCCcceEEEEEhHHcc
Confidence 46899999999987653
No 90
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.72 E-value=1e-16 Score=107.81 Aligned_cols=88 Identities=19% Similarity=0.376 Sum_probs=74.4
Q ss_pred EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCC
Q psy12820 58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDM 136 (156)
Q Consensus 58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~ 136 (156)
..|+|+|++|++|+..+ .+.+||||++.+.+ . +.+|++++++ .||+|||.|.|.+..+ ...|.|+|||++.
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~-----~-~~kT~v~~~t-~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~ 74 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG-----E-SVRSPVQKDT-LSPEFDTQAIFYRKKP-RSPIKIQVWNSNL 74 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEECC-----E-EEEeCccCCC-CCCcccceEEEEecCC-CCEEEEEEEECCC
Confidence 46899999999998765 67899999998642 2 6899999988 9999999999987654 4689999999987
Q ss_pred CCCCceEEEEEEECCCCC
Q psy12820 137 FGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 137 ~~~~~~iG~~~i~l~~l~ 154 (156)
.+ +++||.+.++++++.
T Consensus 75 ~~-d~~lG~~~~~l~~~~ 91 (126)
T cd04046 75 LC-DEFLGQATLSADPND 91 (126)
T ss_pred CC-CCceEEEEEecccCC
Confidence 75 799999999997643
No 91
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.72 E-value=1.1e-16 Score=111.73 Aligned_cols=89 Identities=25% Similarity=0.450 Sum_probs=73.6
Q ss_pred EEEEEEEeeeeecccCC-------------------------------CCCCCCEEEEEEecCCCCCCceEEeEEecCCC
Q psy12820 58 VKVLLRVLAARHLTRSG-------------------------------RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNG 106 (156)
Q Consensus 58 ~~L~v~v~~a~~L~~~~-------------------------------~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~ 106 (156)
..|.|+|++|++|+.++ .+.+||||+|.+.+ .. ..||++++++
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~----~~-~~rT~v~~~~- 80 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG----AR-VARTRVIENS- 80 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC----eE-eeEEEEeCCC-
Confidence 47999999999998753 34579999999842 22 4699999988
Q ss_pred CCCeeCceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEECCCCC
Q psy12820 107 FNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 107 ~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~ 154 (156)
.||.|||+|.|.+..+ ...|.|.|||++..+ +++||++.+|++++.
T Consensus 81 ~nP~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~ 126 (158)
T cd04015 81 ENPVWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLL 126 (158)
T ss_pred CCCccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHcc
Confidence 9999999999988654 357999999999876 489999999998764
No 92
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.72 E-value=8.8e-17 Score=111.32 Aligned_cols=94 Identities=20% Similarity=0.344 Sum_probs=76.6
Q ss_pred eeEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCC-----------------------CCceEEeEEecCCCCCCee
Q psy12820 56 TRVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYD-----------------------TGLKLTTKTVSDNGFNPTW 111 (156)
Q Consensus 56 ~~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~-----------------------~~~~~kT~~~~~~~~nP~w 111 (156)
....|+|+|++|++|...+ .+.+||||++.+...... .....+|++++++ .||.|
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~t-lnP~W 104 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQT-LNPVW 104 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCC-CCCcc
Confidence 4578999999999998876 678999999988532110 0114789998888 99999
Q ss_pred CceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEECCCCC
Q psy12820 112 NESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 112 ~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~ 154 (156)
||+|.|.+.......|.|+|||++ +++||++.++++++.
T Consensus 105 nE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~ 143 (153)
T cd08676 105 NETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP 143 (153)
T ss_pred ccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC
Confidence 999999987655678999999997 789999999998775
No 93
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.72 E-value=8.5e-17 Score=108.29 Aligned_cols=83 Identities=24% Similarity=0.394 Sum_probs=72.0
Q ss_pred EeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCC--CccEEEEEEEecCCCCCCc
Q psy12820 64 VLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNP--EMALLRFVCQDEDMFGDSN 141 (156)
Q Consensus 64 v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~--~~~~l~~~V~d~~~~~~~~ 141 (156)
|++|++|+. ..+.+||||++.+.+ . +.+|++++++ .||+|||+|.|.+..+ +...|.|+|||++..++++
T Consensus 2 vi~a~~L~~-~~g~~Dpyv~v~~~~-----~-~~kT~v~~~~-~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~ 73 (127)
T cd08373 2 VVSLKNLPG-LKGKGDRIAKVTFRG-----V-KKKTRVLENE-LNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNR 73 (127)
T ss_pred eEEeeCCcc-cCCCCCCEEEEEECC-----E-eeecceeCCC-cCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCc
Confidence 789999988 667899999999843 2 6799999988 9999999999998754 4568999999999988899
Q ss_pred eEEEEEEECCCCC
Q psy12820 142 FIGQATYPVYTNR 154 (156)
Q Consensus 142 ~iG~~~i~l~~l~ 154 (156)
+||++.++++++.
T Consensus 74 ~iG~~~~~l~~l~ 86 (127)
T cd08373 74 LIGSATVSLQDLV 86 (127)
T ss_pred eEEEEEEEhhHcc
Confidence 9999999998764
No 94
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.72 E-value=1.7e-16 Score=108.14 Aligned_cols=92 Identities=22% Similarity=0.331 Sum_probs=74.0
Q ss_pred EEEEEEeeeeecccCCCCCCCCEEEEEEecCCCC--------CCceEEeEEecCCCCCCee-CceEEEEEeCCCccEEEE
Q psy12820 59 KVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYD--------TGLKLTTKTVSDNGFNPTW-NESCEFTVHNPEMALLRF 129 (156)
Q Consensus 59 ~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~--------~~~~~kT~~~~~~~~nP~w-~e~f~f~v~~~~~~~l~~ 129 (156)
.++|++++|++|+....+.+||||++.+.+.... .. +++|++++++ +||+| ||+|.|.+.. ...|.+
T Consensus 2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~-~~kT~v~~~t-lnP~W~nE~f~f~v~~--~~~L~v 77 (137)
T cd08691 2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQ-ECRTSIVENT-INPVWHREQFVFVGLP--TDVLEI 77 (137)
T ss_pred EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccc-eeeeeeEcCC-CCCceEceEEEEEcCC--CCEEEE
Confidence 3689999999998545789999999998643211 22 7899999988 99999 9999998853 358999
Q ss_pred EEEecCCCCC---CceEEEEEEECCCCC
Q psy12820 130 VCQDEDMFGD---SNFIGQATYPVYTNR 154 (156)
Q Consensus 130 ~V~d~~~~~~---~~~iG~~~i~l~~l~ 154 (156)
+|||++..++ +++||++.++++++.
T Consensus 78 ~V~D~~~~~~~~~~d~lG~~~i~l~~l~ 105 (137)
T cd08691 78 EVKDKFAKSRPIIRRFLGKLSIPVQRLL 105 (137)
T ss_pred EEEecCCCCCccCCceEEEEEEEHHHhc
Confidence 9999865443 689999999998874
No 95
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.70 E-value=3e-16 Score=108.69 Aligned_cols=93 Identities=17% Similarity=0.229 Sum_probs=71.9
Q ss_pred EEEEEeeeee--cccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC--------ccEEE
Q psy12820 60 VLLRVLAARH--LTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE--------MALLR 128 (156)
Q Consensus 60 L~v~v~~a~~--L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~--------~~~l~ 128 (156)
..++|..|.+ |+... .+.+||||++++.-...+.. +.||++++++ +||+|||+|.|.+.... ...|.
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~-k~KT~v~k~T-lnPvfNE~f~f~I~~~~~~~~R~l~~~~L~ 81 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQ-SGKTSTIKDT-NSPEYNESFKLNINRKHRSFQRVFKRHGLK 81 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCc-eeecCcccCC-CCCcccceEEEEeccccchhhhhccCCcEE
Confidence 4556666666 55544 56789999999743323334 8999999999 99999999999986442 23699
Q ss_pred EEEEecCCC-CCCceEEEEEEECCCCC
Q psy12820 129 FVCQDEDMF-GDSNFIGQATYPVYTNR 154 (156)
Q Consensus 129 ~~V~d~~~~-~~~~~iG~~~i~l~~l~ 154 (156)
|+|||++.+ ++|++||++.++|+.+.
T Consensus 82 ~~V~d~~~f~~~D~~iG~~~i~L~~l~ 108 (155)
T cd08690 82 FEVYHKGGFLRSDKLLGTAQVKLEPLE 108 (155)
T ss_pred EEEEeCCCcccCCCeeEEEEEEccccc
Confidence 999999876 57899999999998874
No 96
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.69 E-value=4.4e-16 Score=104.62 Aligned_cols=88 Identities=23% Similarity=0.324 Sum_probs=73.4
Q ss_pred EEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCC
Q psy12820 59 KVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG 138 (156)
Q Consensus 59 ~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~ 138 (156)
.|.|+|++|+.+.....+.+||||++.+.+ .. ..+|++++++ .+|.|||+|.|.+.. ...|.|+|||++..+
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~----~~-~~kT~v~~~t-~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~ 74 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDG----QP-PKKTEVSKKT-SNPKWNEHFTVLVTP--QSTLEFKVWSHHTLK 74 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECC----cc-cEEeeeeCCC-CCCccccEEEEEeCC--CCEEEEEEEeCCCCC
Confidence 689999999854444467899999999742 22 6899998887 999999999998753 468999999999998
Q ss_pred CCceEEEEEEECCCCC
Q psy12820 139 DSNFIGQATYPVYTNR 154 (156)
Q Consensus 139 ~~~~iG~~~i~l~~l~ 154 (156)
.+++||++.++++++.
T Consensus 75 ~~~~iG~~~i~l~~l~ 90 (125)
T cd04021 75 ADVLLGEASLDLSDIL 90 (125)
T ss_pred CCcEEEEEEEEHHHhH
Confidence 8999999999987764
No 97
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.68 E-value=4e-16 Score=102.42 Aligned_cols=90 Identities=18% Similarity=0.305 Sum_probs=70.8
Q ss_pred EEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEe---CCC-ccEEEEEEEecCCC
Q psy12820 63 RVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVH---NPE-MALLRFVCQDEDMF 137 (156)
Q Consensus 63 ~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~---~~~-~~~l~~~V~d~~~~ 137 (156)
-.++|++|+..+ .+.+||||++++.+........++|++++++ .||+|| +|.|.+. ..+ ...|.|+|||++..
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t-~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNT-LNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccC-CCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 356899998876 6789999999986532112236899999998 999999 6777643 222 35899999999999
Q ss_pred CCCceEEEEEEECCCCC
Q psy12820 138 GDSNFIGQATYPVYTNR 154 (156)
Q Consensus 138 ~~~~~iG~~~i~l~~l~ 154 (156)
+++++||++.+++++|.
T Consensus 83 ~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 83 GKHDLIGEFETTLDELL 99 (110)
T ss_pred CCCcEEEEEEEEHHHHh
Confidence 99999999999998774
No 98
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.67 E-value=4.2e-16 Score=96.90 Aligned_cols=84 Identities=32% Similarity=0.613 Sum_probs=73.6
Q ss_pred EEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCC
Q psy12820 60 VLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG 138 (156)
Q Consensus 60 L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~ 138 (156)
|+|+|++|++|+..+ .+..+|||++.+.+... ...+|++++++ .+|.|+|+|.|.+..++...|.|+|||++..+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~---~~~~T~~~~~~-~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~ 76 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES---TKYKTKVKKNT-SNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFG 76 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC---EEEEECCBSSB-SSEEEEEEEEEEESHGCGTEEEEEEEEETSSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeee---eeeeeeeeecc-ccceeeeeeeeeeecccccceEEEEEECCCCC
Confidence 789999999999855 66899999999876432 36899998888 99999999999988888888999999999998
Q ss_pred CCceEEEEE
Q psy12820 139 DSNFIGQAT 147 (156)
Q Consensus 139 ~~~~iG~~~ 147 (156)
++++||++.
T Consensus 77 ~~~~iG~~~ 85 (85)
T PF00168_consen 77 KDELIGEVK 85 (85)
T ss_dssp SEEEEEEEE
T ss_pred CCCEEEEEC
Confidence 899999974
No 99
>KOG1028|consensus
Probab=99.67 E-value=3.9e-16 Score=123.85 Aligned_cols=95 Identities=28% Similarity=0.438 Sum_probs=82.4
Q ss_pred eeEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc--cEEEEEEE
Q psy12820 56 TRVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQ 132 (156)
Q Consensus 56 ~~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~--~~l~~~V~ 132 (156)
....|+|+|+.|.+|+..+ .+.+||||+++++. |+..+.+|++.+++ +||+|||+|.|.|...++ ..|.|+||
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llP---dk~~k~kT~v~r~t-lnP~fnEtf~f~v~~~~l~~~~L~l~V~ 240 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLP---DKKGKFKTRVHRKT-LNPVFNETFRFEVPYEELSNRVLHLSVY 240 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcC---CCCCcceeeeeecC-cCCccccceEeecCHHHhccCEEEEEEE
Confidence 3567999999999999887 56799999999984 44458999999998 999999999999775544 48999999
Q ss_pred ecCCCCCCceEEEEEEECCCCC
Q psy12820 133 DEDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 133 d~~~~~~~~~iG~~~i~l~~l~ 154 (156)
|.|.++++++||++.++|..+.
T Consensus 241 ~~drfsr~~~iGev~~~l~~~~ 262 (421)
T KOG1028|consen 241 DFDRFSRHDFIGEVILPLGEVD 262 (421)
T ss_pred ecCCcccccEEEEEEecCcccc
Confidence 9999999999999999987654
No 100
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.56 E-value=4.6e-14 Score=95.30 Aligned_cols=93 Identities=16% Similarity=0.151 Sum_probs=75.8
Q ss_pred EEEEEeeeeecccCC---CC--CCCCEEEEEEecCCCCCCceEEeEEecCCCCC--CeeCceEEEEEeCC----------
Q psy12820 60 VLLRVLAARHLTRSG---RC--TTSPFVEVEVLGADYDTGLKLTTKTVSDNGFN--PTWNESCEFTVHNP---------- 122 (156)
Q Consensus 60 L~v~v~~a~~L~~~~---~~--~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~n--P~w~e~f~f~v~~~---------- 122 (156)
|+|.|..|++++... .+ .+||||++.+.+. ...+++|.++.++ +| |.||+.|.|.+..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~---~~~kqkTDVHyrs-lnG~~~FNwRfvF~~~~~~~~~~~~~~~ 77 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL---EEDKQKTDVHYRS-LDGEGNFNWRFVFPFDYLPAEKKIVVIK 77 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccC---cccccccceEEec-CCCCcEEeEEEEEeeecCCccceeEEEe
Confidence 789999999966432 34 5999999999764 2237899999988 88 99999999987651
Q ss_pred -----------C--ccEEEEEEEecCCCCCCceEEEEEEECCCCCCC
Q psy12820 123 -----------E--MALLRFVCQDEDMFGDSNFIGQATYPVYTNRFP 156 (156)
Q Consensus 123 -----------~--~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~ 156 (156)
+ ...|.++|||.|.++.+++||++.+++..+.+|
T Consensus 78 ~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 78 KEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred eccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccc
Confidence 1 247899999999999999999999999987654
No 101
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.54 E-value=3e-14 Score=93.78 Aligned_cols=72 Identities=24% Similarity=0.355 Sum_probs=61.4
Q ss_pred CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEECCCC
Q psy12820 75 RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTN 153 (156)
Q Consensus 75 ~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l 153 (156)
.|.+||||+|.+.+ .. ..+|++++++ .||+|||+|.|.+..+....|.|.|+|++.. ++++||.+.++|+++
T Consensus 10 ~G~~dPYv~v~v~~----~~-~~kT~v~~~t-~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l 81 (111)
T cd04052 10 TGLLSPYAELYLNG----KL-VYTTRVKKKT-NNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDL 81 (111)
T ss_pred CCCCCceEEEEECC----EE-EEEEeeeccC-CCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHH
Confidence 67799999999842 22 5788888887 9999999999998876667899999999988 789999999998765
No 102
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.53 E-value=2.1e-13 Score=86.60 Aligned_cols=91 Identities=36% Similarity=0.645 Sum_probs=76.0
Q ss_pred EEEEEeeeeecccCCC-CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCC
Q psy12820 60 VLLRVLAARHLTRSGR-CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG 138 (156)
Q Consensus 60 L~v~v~~a~~L~~~~~-~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~ 138 (156)
+.|.|++|++|..... ...+|||++++.+.+ ....+|+++.++ .+|.|+|+|.|.+..+....|.|+||+.+..+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~---~~~~~T~~~~~~-~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~ 77 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDP---KEKKKTKVVKNT-LNPVWNETFEFEVPPPELAELEIEVYDKDRFG 77 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc---cceEeeeEecCC-CCCcccceEEEEecCcccCEEEEEEEecCCcc
Confidence 6899999999987653 578999999986432 226889998887 79999999999988765678999999998877
Q ss_pred CCceEEEEEEECCCCC
Q psy12820 139 DSNFIGQATYPVYTNR 154 (156)
Q Consensus 139 ~~~~iG~~~i~l~~l~ 154 (156)
.+.++|.+.+++.++.
T Consensus 78 ~~~~~G~~~~~l~~~~ 93 (101)
T smart00239 78 RDDFIGQVTIPLSDLL 93 (101)
T ss_pred CCceeEEEEEEHHHcc
Confidence 7889999999987664
No 103
>PF00387 PI-PLC-Y: Phosphatidylinositol-specific phospholipase C, Y domain This entry is for the whole phospholipase C protein; InterPro: IPR001711 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), an eukaryotic intracellular enzyme, plays an important role in signal transduction processes [] (see IPR001192 from INTERPRO). It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as 'X-box' (see IPR000909 from INTERPRO) and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. At the C-terminal of the Y-box, there is a C2 domain (see IPR000008 from INTERPRO) possibly involved in Ca-dependent membrane attachment.; GO: 0004435 phosphatidylinositol phospholipase C activity, 0006629 lipid metabolic process, 0007165 signal transduction, 0035556 intracellular signal transduction; PDB: 3OHM_B 2FJU_B 2ZKM_X 3QR1_D 3QR0_A 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=99.53 E-value=1.5e-15 Score=100.28 Aligned_cols=30 Identities=43% Similarity=0.984 Sum_probs=24.8
Q ss_pred ccCChhhhccccccccCCceeEEecCCccc
Q psy12820 11 SVINKAMQVNHAKFRMNGGCGYLLRPAFMF 40 (156)
Q Consensus 11 ~t~d~~m~~n~~~F~~ng~~GyvlKP~~l~ 40 (156)
||.|.+|+||+|||++||+|||||||++||
T Consensus 89 Qt~d~~m~ln~g~F~~NG~cGYVLKP~~lR 118 (118)
T PF00387_consen 89 QTPDEPMQLNQGMFRQNGGCGYVLKPEYLR 118 (118)
T ss_dssp TS-SHHHHHHHHHTTTGGG-SEEE--GGGT
T ss_pred cCCChhHHHHHhhhccCCCCCeEeCchhhC
Confidence 399999999999999999999999999997
No 104
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.53 E-value=1.4e-13 Score=91.07 Aligned_cols=82 Identities=28% Similarity=0.438 Sum_probs=63.8
Q ss_pred EEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc--EEEEEEEecCCC
Q psy12820 60 VLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMF 137 (156)
Q Consensus 60 L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~--~l~~~V~d~~~~ 137 (156)
|+|+|++|++|+.. +.+||||++.+.+ .. ..+|+++++ .||.|||+|.|.+...+.. .|.+.+||.+..
T Consensus 2 L~v~vi~a~~l~~~--~~~dpyv~v~~~~----~~-~~kT~~~~~--~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~ 72 (117)
T cd08383 2 LRLRILEAKNLPSK--GTRDPYCTVSLDQ----VE-VARTKTVEK--LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSK 72 (117)
T ss_pred eEEEEEEecCCCcC--CCCCceEEEEECC----EE-eEecceEEC--CCCcccceEEEecCCccccEEEEEEEEEecccC
Confidence 78999999999876 7899999999842 22 568888766 7999999999998765443 677788888766
Q ss_pred CCCceEEEEEEEC
Q psy12820 138 GDSNFIGQATYPV 150 (156)
Q Consensus 138 ~~~~~iG~~~i~l 150 (156)
+++.++|.+.+..
T Consensus 73 ~~~~~~g~v~l~~ 85 (117)
T cd08383 73 DRDIVIGKVALSK 85 (117)
T ss_pred CCeeEEEEEEecC
Confidence 6666777765543
No 105
>KOG1028|consensus
Probab=99.52 E-value=5.7e-14 Score=111.57 Aligned_cols=136 Identities=23% Similarity=0.292 Sum_probs=99.8
Q ss_pred Chhhhccc-cccccCCceeEEecCCcccCCCC--------CCCC----CC--CC-----CceeeEEEEEEEeeeeecccC
Q psy12820 14 NKAMQVNH-AKFRMNGGCGYLLRPAFMFSESY--------DPYD----PT--SL-----VGVTRVKVLLRVLAARHLTRS 73 (156)
Q Consensus 14 d~~m~~n~-~~F~~ng~~GyvlKP~~l~~~~~--------~p~~----~~--~~-----~~~~~~~L~v~v~~a~~L~~~ 73 (156)
-+.+.+.+ ++|..++--|.|.=|....+... .|.. .. ++ .-....+|+|.|+.|++|+..
T Consensus 234 ~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~ 313 (421)
T KOG1028|consen 234 VLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLTVVVIKARNLKSM 313 (421)
T ss_pred EEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeEEEEEEEecCCCcc
Confidence 34445554 78999999999998833222211 0110 00 00 012347899999999999987
Q ss_pred C-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc--EEEEEEEecCCCCCCceEEEEEEEC
Q psy12820 74 G-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQATYPV 150 (156)
Q Consensus 74 ~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~--~l~~~V~d~~~~~~~~~iG~~~i~l 150 (156)
+ .+..||||++.+.... ....++||.+.+++ .||+|||+|.|.|....+. .+.++|||+|.++.+++||++.+..
T Consensus 314 ~~~~~~d~~Vk~~l~~~~-~~~~kkkT~~~~~~-~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~ 391 (421)
T KOG1028|consen 314 DVGGLSDPYVKVTLLDGD-KRLSKKKTSVKKKT-LNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGS 391 (421)
T ss_pred cCCCCCCccEEEEEecCC-ceeeeeeeecccCC-CCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecC
Confidence 6 6788999999998654 33457889988888 9999999999988755444 7889999999999999999988765
Q ss_pred C
Q psy12820 151 Y 151 (156)
Q Consensus 151 ~ 151 (156)
.
T Consensus 392 ~ 392 (421)
T KOG1028|consen 392 D 392 (421)
T ss_pred C
Confidence 4
No 106
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.51 E-value=2.2e-13 Score=93.46 Aligned_cols=89 Identities=20% Similarity=0.231 Sum_probs=70.1
Q ss_pred eeeEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEec
Q psy12820 55 VTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDE 134 (156)
Q Consensus 55 ~~~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~ 134 (156)
.....|.|.|++|++|+..+ +|||++.+- .....||+++.++ .||.|+|.|+|....+ ...+.|.|+..
T Consensus 8 R~~~sL~v~V~EAk~Lp~~~----~~Y~~i~Ld-----~~~vaRT~v~~~~-~nP~W~E~F~f~~~~~-~~~l~v~v~k~ 76 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPKK----RYYCELCLD-----KTLYARTTSKLKT-DTLFWGEHFEFSNLPP-VSVITVNLYRE 76 (146)
T ss_pred EEEEEEEEEEEEccCCCCcC----CceEEEEEC-----CEEEEEEEEEcCC-CCCcceeeEEecCCCc-ccEEEEEEEEc
Confidence 34678999999999998754 799999984 3325699999988 8999999999975543 46789999764
Q ss_pred C-CCC---CCceEEEEEEECCCCC
Q psy12820 135 D-MFG---DSNFIGQATYPVYTNR 154 (156)
Q Consensus 135 ~-~~~---~~~~iG~~~i~l~~l~ 154 (156)
+ ..+ ++++||.+.||+.++.
T Consensus 77 ~~~~~~~~~~~~IG~V~Ip~~~l~ 100 (146)
T cd04013 77 SDKKKKKDKSQLIGTVNIPVTDVS 100 (146)
T ss_pred cCccccccCCcEEEEEEEEHHHhc
Confidence 4 222 5689999999988764
No 107
>PLN03008 Phospholipase D delta
Probab=99.50 E-value=1.6e-13 Score=114.66 Aligned_cols=72 Identities=31% Similarity=0.562 Sum_probs=61.2
Q ss_pred CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEECCCCCC
Q psy12820 76 CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNRF 155 (156)
Q Consensus 76 ~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~ 155 (156)
+.+||||+|.+. + .+..||++++++ .||+|||+|.|.+..+. ..|.|+|+|+|.++. ++||++.+|+.+|..
T Consensus 75 ~tSDPYV~I~Lg----~-~rv~RTrVi~n~-~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~ga-D~IG~a~IPL~~L~~ 146 (868)
T PLN03008 75 ITSDPYVTVVVP----Q-ATLARTRVLKNS-QEPLWDEKFNISIAHPF-AYLEFQVKDDDVFGA-QIIGTAKIPVRDIAS 146 (868)
T ss_pred CCCCceEEEEEC----C-cceeeEEeCCCC-CCCCcceeEEEEecCCC-ceEEEEEEcCCccCC-ceeEEEEEEHHHcCC
Confidence 467999999983 2 226799999888 99999999999998764 589999999999985 899999999988753
No 108
>KOG1011|consensus
Probab=99.48 E-value=4.2e-14 Score=114.51 Aligned_cols=91 Identities=31% Similarity=0.461 Sum_probs=76.8
Q ss_pred eeEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEec
Q psy12820 56 TRVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDE 134 (156)
Q Consensus 56 ~~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~ 134 (156)
-..+++++|++|++|-..+ .|++||||.+.+. +. ++||+++..+ +||+|||.|+|.+++.. ..++++|||+
T Consensus 293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~-----kt-krrtrti~~~-lnpvw~ekfhfechnst-drikvrvwde 364 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVG-----KT-KRRTRTIHQE-LNPVWNEKFHFECHNST-DRIKVRVWDE 364 (1283)
T ss_pred cceeeEEeeeecccceecccCCCCCCcEEEeec-----cc-chhhHhhhhc-cchhhhhheeeeecCCC-ceeEEEEecC
Confidence 3568999999999998776 7899999999863 34 8899999999 99999999999999753 5789999998
Q ss_pred CCC-----------CCCceEEEEEEECCCCC
Q psy12820 135 DMF-----------GDSNFIGQATYPVYTNR 154 (156)
Q Consensus 135 ~~~-----------~~~~~iG~~~i~l~~l~ 154 (156)
|.. .+|||+|+..|.+..|.
T Consensus 365 d~dlksklrqkl~resddflgqtvievrtls 395 (1283)
T KOG1011|consen 365 DNDLKSKLRQKLTRESDDFLGQTVIEVRTLS 395 (1283)
T ss_pred cccHHHHHHHHhhhcccccccceeEEEEecc
Confidence 753 36899999999876653
No 109
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.47 E-value=1.1e-13 Score=124.47 Aligned_cols=90 Identities=20% Similarity=0.383 Sum_probs=76.6
Q ss_pred eeEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc-EEEEEEEec
Q psy12820 56 TRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA-LLRFVCQDE 134 (156)
Q Consensus 56 ~~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~-~l~~~V~d~ 134 (156)
-++.|+|+|++|++|. .+.+.+||||++.+.. +.++||+++++| .||+|||.|+|.+..|... .+.++|||+
T Consensus 1978 ~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~g~-----~~~~kTkvvk~~-~nP~Wne~f~~~~~~p~~~~~l~iev~d~ 2050 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK-QSMGNTNAFCKLTLGN-----GPPRQTKVVSHS-SSPEWKEGFTWAFDSPPKGQKLHISCKSK 2050 (2102)
T ss_pred CCcceEEEEeeccccc-cccCCCCCeEEEEECC-----CCcccccccCCC-CCCCcccceeeeecCCCCCCceEEEEEec
Confidence 3678999999999998 5568899999999842 226799999999 9999999999998877653 599999999
Q ss_pred CCCCCCceEEEEEEECCCC
Q psy12820 135 DMFGDSNFIGQATYPVYTN 153 (156)
Q Consensus 135 ~~~~~~~~iG~~~i~l~~l 153 (156)
|.+++ +.+|.+.+++.++
T Consensus 2051 d~f~k-d~~G~~~i~l~~v 2068 (2102)
T PLN03200 2051 NTFGK-SSLGKVTIQIDRV 2068 (2102)
T ss_pred CccCC-CCCceEEEEHHHH
Confidence 99966 5899999998764
No 110
>smart00149 PLCYc Phospholipase C, catalytic domain (part); domain Y. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=99.46 E-value=1.6e-14 Score=94.78 Aligned_cols=29 Identities=52% Similarity=1.099 Sum_probs=27.4
Q ss_pred ccCChhhhccccccccCCceeEEecCCcc
Q psy12820 11 SVINKAMQVNHAKFRMNGGCGYLLRPAFM 39 (156)
Q Consensus 11 ~t~d~~m~~n~~~F~~ng~~GyvlKP~~l 39 (156)
||.|++||||+|||+.||+|||||||++|
T Consensus 87 Qt~d~~m~lN~g~F~~NG~cGYVLKP~~l 115 (115)
T smart00149 87 QTPDKPMQLNQGMFRANGGCGYVLKPDFL 115 (115)
T ss_pred CCCChHHHHHhhHhhcCCCCCeEeCCCCC
Confidence 38999999999999999999999999875
No 111
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.42 E-value=2.7e-12 Score=81.09 Aligned_cols=89 Identities=33% Similarity=0.591 Sum_probs=74.2
Q ss_pred EEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCC
Q psy12820 60 VLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFG 138 (156)
Q Consensus 60 L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~ 138 (156)
|.|.|++|++|+... ....+|||.+.+.+ .. ..+|++..++ .+|.|+|.|.|.+.......+.|.||+.+..+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~----~~-~~~T~~~~~~-~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~ 74 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG----KQ-KFKTKVVKNT-LNPVWNETFEFPVLDPESDTLTVEVWDKDRFS 74 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc----Cc-eEecceeCCC-CCCcccceEEEEccCCCCCEEEEEEEecCCCC
Confidence 468999999997743 56789999999853 23 7889988887 89999999999988644568999999998887
Q ss_pred CCceEEEEEEECCCCC
Q psy12820 139 DSNFIGQATYPVYTNR 154 (156)
Q Consensus 139 ~~~~iG~~~i~l~~l~ 154 (156)
.+.+||++.+++.++.
T Consensus 75 ~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 75 KDDFLGEVEIPLSELL 90 (102)
T ss_pred CCceeEEEEEeHHHhh
Confidence 7889999999987764
No 112
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.33 E-value=2.7e-12 Score=109.37 Aligned_cols=93 Identities=22% Similarity=0.274 Sum_probs=83.1
Q ss_pred eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecC
Q psy12820 57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDED 135 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~ 135 (156)
...|+|.+.+|++|+..+ ++.+||||++.+-+ +. .++|++++++ +||+|||.+..+|.+.....+.+.|+|||
T Consensus 1039 sG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~----k~-vyktkv~Kkt-lNPvwNEe~~i~v~~r~~D~~~i~v~Dwd 1112 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLNE----KS-VYKTKVVKKT-LNPVWNEEFTIEVLNRVKDVLTINVNDWD 1112 (1227)
T ss_pred cCcEEEEEeccCCCcccccCCCCCceEEEEecc----ee-cccccchhcc-CCCCccccceEeeeccccceEEEEEeecc
Confidence 457999999999999876 77799999998843 33 7899999999 99999999999999888889999999999
Q ss_pred CCCCCceEEEEEEECCCCCC
Q psy12820 136 MFGDSNFIGQATYPVYTNRF 155 (156)
Q Consensus 136 ~~~~~~~iG~~~i~l~~l~~ 155 (156)
...+++.||.+.++|..|.+
T Consensus 1113 ~~~knd~lg~~~idL~~l~~ 1132 (1227)
T COG5038 1113 SGEKNDLLGTAEIDLSKLEP 1132 (1227)
T ss_pred cCCCccccccccccHhhcCc
Confidence 99999999999999988764
No 113
>KOG1328|consensus
Probab=99.20 E-value=4.5e-12 Score=103.76 Aligned_cols=96 Identities=27% Similarity=0.401 Sum_probs=78.2
Q ss_pred eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCC-CCCceEEeEEecCCCCCCeeCceEEEEEeCC----CccEEEEE
Q psy12820 57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADY-DTGLKLTTKTVSDNGFNPTWNESCEFTVHNP----EMALLRFV 130 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~-~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~----~~~~l~~~ 130 (156)
..+|.|.|+-|+++-+.+ +|.+||||.|++...-. .....++|++++++ +||+|+|+|.|.|... +.+++.|+
T Consensus 946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rt-LnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRT-LNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhcc-ccchhhhheeeecCccccccccceEEEE
Confidence 457889999999887665 89999999999864211 11237799999998 9999999999998742 23599999
Q ss_pred EEecCCCCCCceEEEEEEECCCC
Q psy12820 131 CQDEDMFGDSNFIGQATYPVYTN 153 (156)
Q Consensus 131 V~d~~~~~~~~~iG~~~i~l~~l 153 (156)
|+|+|-.+.+||-|++.+.|+++
T Consensus 1025 VMDHD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred eeccceecccccchHHHHhhCCC
Confidence 99999999999999998887765
No 114
>PLN02270 phospholipase D alpha
Probab=99.04 E-value=1.3e-09 Score=91.33 Aligned_cols=90 Identities=18% Similarity=0.311 Sum_probs=74.0
Q ss_pred EEEEEEEeeeeecccC-------------------CCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEE
Q psy12820 58 VKVLLRVLAARHLTRS-------------------GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT 118 (156)
Q Consensus 58 ~~L~v~v~~a~~L~~~-------------------~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~ 118 (156)
..|.++|++|++|+.. ..+.+||||.|.+. ..+.-||+++.+...||.|+|+|.+.
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~-----~a~v~rtr~~~~~~~~p~w~e~f~i~ 82 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE-----KARVGRTRKIENEPKNPRWYESFHIY 82 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC-----CcEEEEEeecCCCCCCCccccceEEe
Confidence 4689999999998742 13467999999984 33378999998864699999999999
Q ss_pred EeCCCccEEEEEEEecCCCCCCceEEEEEEECCCCC
Q psy12820 119 VHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 119 v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~ 154 (156)
+..+- +.+.|+|+|.+.++. .+||.+.+|+.+|.
T Consensus 83 ~ah~~-~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~ 116 (808)
T PLN02270 83 CAHMA-SNIIFTVKDDNPIGA-TLIGRAYIPVEEIL 116 (808)
T ss_pred eccCc-ceEEEEEecCCccCc-eEEEEEEEEHHHhc
Confidence 88764 689999999999987 59999999987763
No 115
>KOG1011|consensus
Probab=99.01 E-value=1.2e-09 Score=89.15 Aligned_cols=101 Identities=32% Similarity=0.459 Sum_probs=85.5
Q ss_pred CceeeEEEEEEEeeeeecccCCCCCCCCEEEEEEecCC-CCCCceEEeEEecCCCCCCeeCceEEEEEeC---CCccEEE
Q psy12820 53 VGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGAD-YDTGLKLTTKTVSDNGFNPTWNESCEFTVHN---PEMALLR 128 (156)
Q Consensus 53 ~~~~~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~-~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~---~~~~~l~ 128 (156)
+|....+++|+|+.|.+|.....|...|||+|.+.|.. +|+.+++.|++..+| ..|.+||+|+|.+.+ |+.-.|.
T Consensus 1120 pgtgehkvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnn-WaPKyNEtF~f~Lg~e~~Pe~YEL~ 1198 (1283)
T KOG1011|consen 1120 PGTGEHKVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNN-WAPKYNETFHFFLGNEGGPEHYELQ 1198 (1283)
T ss_pred CCCCcceEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCC-cCcccCceeEEEeccCCCCceEEEE
Confidence 45566789999999999998888889999999998864 355568888888888 999999999999875 4444899
Q ss_pred EEEEecCCCCCCceEEEEEEECCCCC
Q psy12820 129 FVCQDEDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 129 ~~V~d~~~~~~~~~iG~~~i~l~~l~ 154 (156)
|.|.|+.....|..+|.+.++|.++.
T Consensus 1199 ~~VKDYCFAReDRvvGl~VlqL~~va 1224 (1283)
T KOG1011|consen 1199 FCVKDYCFAREDRVVGLAVLQLRSVA 1224 (1283)
T ss_pred EeehhheeecccceeeeeeeehhhHh
Confidence 99999988888889999999998764
No 116
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.01 E-value=1.6e-09 Score=92.79 Aligned_cols=95 Identities=20% Similarity=0.286 Sum_probs=78.2
Q ss_pred ceeeEEEEEEEeeeeecccCC---CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEE
Q psy12820 54 GVTRVKVLLRVLAARHLTRSG---RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFV 130 (156)
Q Consensus 54 ~~~~~~L~v~v~~a~~L~~~~---~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~ 130 (156)
+..-+.|.|+|.+|.+|...+ .+..|||+++... +.. .-||++.+++ +||+|||+|-..+..- ...|.++
T Consensus 432 ~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~----~r~-~gkT~v~~nt-~nPvwNEt~Yi~lns~-~d~L~Ls 504 (1227)
T COG5038 432 GTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFS----DRV-IGKTRVKKNT-LNPVWNETFYILLNSF-TDPLNLS 504 (1227)
T ss_pred CCeeEEEEEEEeeccCcccccccccCCCCceEEEEec----ccc-CCccceeecc-CCccccceEEEEeccc-CCceeEE
Confidence 345578999999999998876 7889999999964 333 5589999988 9999999987766532 3478999
Q ss_pred EEecCCCCCCceEEEEEEECCCCCC
Q psy12820 131 CQDEDMFGDSNFIGQATYPVYTNRF 155 (156)
Q Consensus 131 V~d~~~~~~~~~iG~~~i~l~~l~~ 155 (156)
+||.+...+|+++|.+.++|..|.+
T Consensus 505 lyD~n~~~sd~vvG~~~l~L~~L~~ 529 (1227)
T COG5038 505 LYDFNSFKSDKVVGSTQLDLALLHQ 529 (1227)
T ss_pred EEeccccCCcceeeeEEechHHhhh
Confidence 9998888899999999999887654
No 117
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.98 E-value=2.2e-09 Score=69.10 Aligned_cols=82 Identities=18% Similarity=0.224 Sum_probs=60.9
Q ss_pred EEEEEeeeeecccCC----CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecC
Q psy12820 60 VLLRVLAARHLTRSG----RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDED 135 (156)
Q Consensus 60 L~v~v~~a~~L~~~~----~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~ 135 (156)
|+|+|.+++++.... .+.++|||.+.+. +.. +.||+. + .||.|||+|.|++. ....+.+.|||..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve----d~~-kaRTr~---s-rnd~WnE~F~i~Vd--k~nEiel~VyDk~ 69 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVE----DVE-RARTKP---S-RNDRWNEDFEIPVE--KNNEEEVIVYDKG 69 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEEC----CEE-EEeccC---C-CCCcccceEEEEec--CCcEEEEEEEeCC
Confidence 578999999997654 5678999999974 344 677776 2 68999999999995 3568999999985
Q ss_pred CCCCCceEEEEEEECCCC
Q psy12820 136 MFGDSNFIGQATYPVYTN 153 (156)
Q Consensus 136 ~~~~~~~iG~~~i~l~~l 153 (156)
.. ..--||..-+++++|
T Consensus 70 ~~-~~~Pi~llW~~~sdi 86 (109)
T cd08689 70 GD-QPVPVGLLWLRLSDI 86 (109)
T ss_pred CC-eecceeeehhhHHHH
Confidence 32 223577776666654
No 118
>KOG2059|consensus
Probab=98.93 E-value=1.4e-09 Score=88.97 Aligned_cols=88 Identities=18% Similarity=0.263 Sum_probs=74.3
Q ss_pred EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCC
Q psy12820 58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDM 136 (156)
Q Consensus 58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~ 136 (156)
..|.|+|.+|++|+..+ .+..|||+.|.+- +.. ..||.++.++ +.|.|.|.|.|.+.. ....|.|=|||.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD----~E~-v~RT~tv~ks-L~PF~gEe~~~~iP~-~F~~l~fYv~D~d- 76 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD----QEE-VCRTATVEKS-LCPFFGEEFYFEIPR-TFRYLSFYVWDRD- 76 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeec----chh-hhhhhhhhhh-cCCccccceEEecCc-ceeeEEEEEeccc-
Confidence 46899999999999876 7789999999872 233 7899999999 999999999998874 3467899999999
Q ss_pred CCCCceEEEEEEECCCC
Q psy12820 137 FGDSNFIGQATYPVYTN 153 (156)
Q Consensus 137 ~~~~~~iG~~~i~l~~l 153 (156)
+++|+.||.+.|.-.+|
T Consensus 77 ~~~D~~IGKvai~re~l 93 (800)
T KOG2059|consen 77 LKRDDIIGKVAIKREDL 93 (800)
T ss_pred cccccccceeeeeHHHH
Confidence 89999999998864443
No 119
>KOG1031|consensus
Probab=98.77 E-value=9.9e-09 Score=83.08 Aligned_cols=90 Identities=24% Similarity=0.416 Sum_probs=76.3
Q ss_pred eEEEEEEEeeeeecccCC--CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCce-EEEEEeCCCcc--EEEEEE
Q psy12820 57 RVKVLLRVLAARHLTRSG--RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNES-CEFTVHNPEMA--LLRFVC 131 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~--~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~-f~f~v~~~~~~--~l~~~V 131 (156)
+.+|.|+|..|++||-++ .+..|.||++.+.. . .+||.+..++ +||.||.. |.|.+...++. -|.+++
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n-----~-t~ktdvf~ks-lnp~wnsdwfkfevddadlqdeplqi~l 74 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN-----T-TFKTDVFLKS-LNPQWNSDWFKFEVDDADLQDEPLQIRL 74 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecc-----c-ceehhhhhhh-cCCcccccceEEecChhhhccCCeeEEE
Confidence 457899999999999876 55789999999853 2 7889998888 99999965 89999876664 789999
Q ss_pred EecCCCCCCceEEEEEEECCCC
Q psy12820 132 QDEDMFGDSNFIGQATYPVYTN 153 (156)
Q Consensus 132 ~d~~~~~~~~~iG~~~i~l~~l 153 (156)
.|+|..+.+|-||.+.+.++-|
T Consensus 75 ld~dtysandaigkv~i~idpl 96 (1169)
T KOG1031|consen 75 LDHDTYSANDAIGKVNIDIDPL 96 (1169)
T ss_pred ecccccccccccceeeeccChH
Confidence 9999999999999999988654
No 120
>KOG0905|consensus
Probab=98.63 E-value=2.5e-08 Score=85.77 Aligned_cols=96 Identities=21% Similarity=0.269 Sum_probs=78.1
Q ss_pred eeEEEEEEEeeeeecccC-CCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEE-EeCCCc--cEEEEEE
Q psy12820 56 TRVKVLLRVLAARHLTRS-GRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT-VHNPEM--ALLRFVC 131 (156)
Q Consensus 56 ~~~~L~v~v~~a~~L~~~-~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~-v~~~~~--~~l~~~V 131 (156)
...+|+|-|.-+++|+-. ++..+||||+.++...+.... |+||++++++ .||.|||.+.+. +....+ ..|.++|
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~s-KRKTKvvrkt-~~PTfnE~LvY~g~p~~~l~qReLQ~sV 1599 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTS-KRKTKVVRKT-RNPTFNEMLVYDGFPKEILQQRELQVSV 1599 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhh-hhhhcccccc-CCCchhhheeecCCchhhhhhheeeeee
Confidence 356788888889998543 466789999999987765444 8999999999 999999998887 332222 4789999
Q ss_pred EecCCCCCCceEEEEEEECCCC
Q psy12820 132 QDEDMFGDSNFIGQATYPVYTN 153 (156)
Q Consensus 132 ~d~~~~~~~~~iG~~~i~l~~l 153 (156)
|..+....+.++|.+.+||.++
T Consensus 1600 ls~~~~~en~~lg~v~i~L~~~ 1621 (1639)
T KOG0905|consen 1600 LSNGGLLENVFLGGVNIPLLKV 1621 (1639)
T ss_pred ecccceeeeeeeeeeecchhhc
Confidence 9999888889999999999765
No 121
>KOG1013|consensus
Probab=98.56 E-value=9.5e-08 Score=72.47 Aligned_cols=90 Identities=18% Similarity=0.319 Sum_probs=72.5
Q ss_pred eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc--EEEEEEEe
Q psy12820 57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQD 133 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~--~l~~~V~d 133 (156)
...+.|+++.+.+|...+ ++.+||||...+.. +.+..-++||.+.+++ .+|.|++.|.|.+...+++ .+.+.|||
T Consensus 232 ~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~p-dv~~~fkkKt~~~K~t-~~p~fd~~~~~~i~pgdLa~~kv~lsvgd 309 (362)
T KOG1013|consen 232 TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSP-DVGKKFKKKTQQKKKT-LNPEFDEEFFYDIGPGDLAYKKVALSVGD 309 (362)
T ss_pred CCceEEEEEEeeeeeccccCCCCCccceeecCC-CcchhhcccCcchhcc-CCccccccccccCCccchhcceEEEeecc
Confidence 346889999988887765 78899999998763 2333447889988888 9999999999999887776 78899999
Q ss_pred cCCCCCCceEEEEEE
Q psy12820 134 EDMFGDSNFIGQATY 148 (156)
Q Consensus 134 ~~~~~~~~~iG~~~i 148 (156)
++..+..+++|-...
T Consensus 310 ~~~G~s~d~~GG~~~ 324 (362)
T KOG1013|consen 310 YDIGKSNDSIGGSML 324 (362)
T ss_pred cCCCcCccCCCcccc
Confidence 998878888886443
No 122
>KOG1326|consensus
Probab=98.53 E-value=5.6e-08 Score=82.39 Aligned_cols=91 Identities=19% Similarity=0.202 Sum_probs=76.1
Q ss_pred eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecC
Q psy12820 57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDED 135 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~ 135 (156)
...++|.|++|.+|.+.+ ++.+||||.+.+.+ +...-++..+.++ +||+|++.|++.+..|....+.+.|||+|
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk----~~~~d~~~yip~t-lnPVfgkmfel~~~lp~ek~l~v~vyd~D 686 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGK----KRTLDRAHYIPNT-LNPVFGKMFELECLLPFEKDLIVEVYDHD 686 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeecc----chhhhhhhcCcCC-CCcHHHHHHHhhcccchhhcceeEEEEee
Confidence 445778899999998876 88999999998742 2113466778888 99999999999988887789999999999
Q ss_pred CCCCCceEEEEEEECCC
Q psy12820 136 MFGDSNFIGQATYPVYT 152 (156)
Q Consensus 136 ~~~~~~~iG~~~i~l~~ 152 (156)
..+.++.||+..+.+..
T Consensus 687 ~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 687 LEAQDEKIGETTIDLEN 703 (1105)
T ss_pred cccccchhhceehhhhh
Confidence 99999999999998753
No 123
>KOG2059|consensus
Probab=98.50 E-value=9.6e-08 Score=78.55 Aligned_cols=86 Identities=22% Similarity=0.274 Sum_probs=65.0
Q ss_pred eeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCC---------------CccEEEEE
Q psy12820 66 AARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNP---------------EMALLRFV 130 (156)
Q Consensus 66 ~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~---------------~~~~l~~~ 130 (156)
+++++-+..++.+|||+++...|.. .....+|++.+++ .+|.|+|.|.|.+..+ +...|++.
T Consensus 139 ~~r~~~P~~~~~~dp~~~v~~~g~~--~~~~~~T~~~kkt-~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~ 215 (800)
T KOG2059|consen 139 KTRQGLPIINGQCDPFARVTLCGPS--KLKEKKTKVKKKT-TNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVD 215 (800)
T ss_pred hhcccCceeCCCCCcceEEeecccc--hhhccccceeeec-cCcchhhheeeeeccccccccchhcCcccCCceeeEEEe
Confidence 3444333346679999999876532 1124689998888 8999999999998765 44578899
Q ss_pred EEe-cCCCCCCceEEEEEEECCCCC
Q psy12820 131 CQD-EDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 131 V~d-~~~~~~~~~iG~~~i~l~~l~ 154 (156)
+|+ .+....++|+|+..+|+..++
T Consensus 216 lW~~~~~~~~~~FlGevrv~v~~~~ 240 (800)
T KOG2059|consen 216 LWNDLNLVINDVFLGEVRVPVDVLR 240 (800)
T ss_pred eccchhhhhhhhhceeEEeehhhhh
Confidence 998 556666899999999998776
No 124
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.30 E-value=1.1e-06 Score=54.72 Aligned_cols=87 Identities=15% Similarity=0.245 Sum_probs=60.4
Q ss_pred EEEeeeeecccCCCCCCCC--EEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCcc--EEEEEEEecCCC
Q psy12820 62 LRVLAARHLTRSGRCTTSP--FVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMF 137 (156)
Q Consensus 62 v~v~~a~~L~~~~~~~~dp--yv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~--~l~~~V~d~~~~ 137 (156)
|+|+.+.+|.-.....-+| |++=-+. . .... ..||+..+.. .||+|.|+|.|++..-++. .|.|+|+. ..
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~t-l-~kpv-~~KsS~rrgs-~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~ 76 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILT-L-PKPV-HFKSSAKEGS-NDIEFMETFVFAIKLQNLQTVRLVFKIQT--QT 76 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEe-c-CCCc-cccchhhcCC-CChhHHHHHHHHHHHhhccceEEEEEeec--cC
Confidence 6788888887654322344 5542222 1 1122 5688877777 9999999999998765554 67788888 34
Q ss_pred CCCceEEEEEEECCCCC
Q psy12820 138 GDSNFIGQATYPVYTNR 154 (156)
Q Consensus 138 ~~~~~iG~~~i~l~~l~ 154 (156)
.+.+.||++.+.++++-
T Consensus 77 ~RKe~iG~~sL~l~s~g 93 (103)
T cd08684 77 PRKRTIGECSLSLRTLS 93 (103)
T ss_pred CccceeeEEEeecccCC
Confidence 56689999999998764
No 125
>KOG1328|consensus
Probab=98.29 E-value=1e-07 Score=78.77 Aligned_cols=98 Identities=20% Similarity=0.328 Sum_probs=71.6
Q ss_pred eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCC----------------------CC--C-ceEEeEEecCCCCCCe
Q psy12820 57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADY----------------------DT--G-LKLTTKTVSDNGFNPT 110 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~----------------------~~--~-~~~kT~~~~~~~~nP~ 110 (156)
+.-+.|.+..|.+|...+ +|.+|||....+..... +. . -.+-|++.+++ +||.
T Consensus 113 ~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~T-LnPk 191 (1103)
T KOG1328|consen 113 SVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKT-LNPK 191 (1103)
T ss_pred cHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccccc-CCcc
Confidence 345778888888887765 78899999876643210 00 0 02345566666 9999
Q ss_pred eCceEEEEEeCCCccEEEEEEEecCCC---------------------------------C---CCceEEEEEEECCCCC
Q psy12820 111 WNESCEFTVHNPEMALLRFVCQDEDMF---------------------------------G---DSNFIGQATYPVYTNR 154 (156)
Q Consensus 111 w~e~f~f~v~~~~~~~l~~~V~d~~~~---------------------------------~---~~~~iG~~~i~l~~l~ 154 (156)
|+|.|.|.|..-....+.+-+||+|.- + .|||+|...+|+++|.
T Consensus 192 W~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP 271 (1103)
T KOG1328|consen 192 WSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP 271 (1103)
T ss_pred hhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence 999999999877667899999998742 1 3789999999999875
Q ss_pred C
Q psy12820 155 F 155 (156)
Q Consensus 155 ~ 155 (156)
.
T Consensus 272 ~ 272 (1103)
T KOG1328|consen 272 P 272 (1103)
T ss_pred c
Confidence 3
No 126
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.20 E-value=4.4e-06 Score=55.73 Aligned_cols=92 Identities=16% Similarity=0.216 Sum_probs=64.9
Q ss_pred EEEEEeeeeecccC-------C-------CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeC----
Q psy12820 60 VLLRVLAARHLTRS-------G-------RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN---- 121 (156)
Q Consensus 60 L~v~v~~a~~L~~~-------~-------~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~---- 121 (156)
|.|.|++|.+|... + .-..++||++.+.-.+ +.. .++|+++.++ +.|.|+-.++|.+..
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~-~~e-~r~TrtVArS-FcPeF~Hh~Efpc~lv~~~ 77 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLP-EKE-LRRTRTVARS-FCPEFNHHVEFPCNLVVQR 77 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCC-CCc-eeeccchhhh-cCCCccceEEEecccEEEc
Confidence 45778888877642 1 1135899999975443 233 7899999998 999999999998651
Q ss_pred -----------CCccEEEEEEEecCCC----------CCCceEEEEEEECCCCC
Q psy12820 122 -----------PEMALLRFVCQDEDMF----------GDSNFIGQATYPVYTNR 154 (156)
Q Consensus 122 -----------~~~~~l~~~V~d~~~~----------~~~~~iG~~~i~l~~l~ 154 (156)
-+.+.+.|+||+...- .+|-+||.+.+|+.+|-
T Consensus 78 ~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll 131 (143)
T cd08683 78 NSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLL 131 (143)
T ss_pred CCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHh
Confidence 1123788999986532 23448999999987653
No 127
>PLN02352 phospholipase D epsilon
Probab=98.19 E-value=8.5e-06 Score=68.72 Aligned_cols=83 Identities=11% Similarity=0.173 Sum_probs=61.4
Q ss_pred EEEEEEEeeeeecccCC------CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEE
Q psy12820 58 VKVLLRVLAARHLTRSG------RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVC 131 (156)
Q Consensus 58 ~~L~v~v~~a~~L~~~~------~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V 131 (156)
.+|.++|++|..+...- ....+|||.|.+.+ .+..|| +++ -||+|+|+|.+.+..+-.+.+.|+|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-----~~v~rt---~~~-~~p~w~e~f~i~~ah~~~~~~~f~v 80 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGN-----KKVAKT---SHE-YDRVWNQTFQILCAHPLDSTITITL 80 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCC-----cEEecC---CCC-CCCccccceeEEeeeecCCcEEEEE
Confidence 47899999998443220 11239999999842 225677 555 6999999999998876546789999
Q ss_pred EecCCCCCCceEEEEEEECCCCC
Q psy12820 132 QDEDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 132 ~d~~~~~~~~~iG~~~i~l~~l~ 154 (156)
+|. -.+||.+.+|+.+|.
T Consensus 81 k~~-----~~~ig~~~~p~~~~~ 98 (758)
T PLN02352 81 KTK-----CSILGRFHIQAHQIV 98 (758)
T ss_pred ecC-----CeEEEEEEEEHHHhh
Confidence 982 479999999987763
No 128
>PLN02964 phosphatidylserine decarboxylase
Probab=98.01 E-value=1.3e-05 Score=66.92 Aligned_cols=85 Identities=14% Similarity=0.270 Sum_probs=68.4
Q ss_pred eEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCC
Q psy12820 57 RVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDM 136 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~ 136 (156)
.....|++++|. ++ ..|+|..+-..| .+ .+||.+.+++ .||+||+.-.|.+...+....+|.|||.+.
T Consensus 53 ~~~~~~~~~~~~----~~--~~~~~~~~~~~g----~~-~f~t~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (644)
T PLN02964 53 SGIALLTLVGAE----MK--FKDKWLACVSFG----EQ-TFRTETSDST-DKPVWNSEKKLLLEKNGPHLARISVFETNR 120 (644)
T ss_pred cCeEEEEeehhh----hc--cCCcEEEEEEec----ce-eeeecccccc-CCcccchhhceEeccCCcceEEEEEEecCC
Confidence 346778888886 22 248887655443 44 8999999988 999999998888887778888999999999
Q ss_pred CCCCceEEEEEEECCCC
Q psy12820 137 FGDSNFIGQATYPVYTN 153 (156)
Q Consensus 137 ~~~~~~iG~~~i~l~~l 153 (156)
++.++++|.+.+++.++
T Consensus 121 ~s~n~lv~~~e~~~t~f 137 (644)
T PLN02964 121 LSKNTLVGYCELDLFDF 137 (644)
T ss_pred CCHHHhhhheeecHhhc
Confidence 99999999999877554
No 129
>KOG1013|consensus
Probab=98.01 E-value=6.1e-07 Score=68.19 Aligned_cols=97 Identities=22% Similarity=0.257 Sum_probs=73.7
Q ss_pred eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC---ccEEEEEEE
Q psy12820 57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE---MALLRFVCQ 132 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~---~~~l~~~V~ 132 (156)
...+..+|..|.+|...+ .+..|||++..++.. .....+.+|++..++ +||.|+|+........+ ...+++.|.
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpg-a~kl~slr~~t~~n~-lN~~w~etev~~~i~~~~~~~K~~Rk~vc 169 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPG-AGKLNSLRTKTTRNT-LNPEWNETEVYEGITDDDTHLKVLRKVVC 169 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccc-hhhhhhhhHHhhccC-cCcceeccceecccccchhhhhhhheeec
Confidence 467889999999998876 788999999987643 222335788887776 99999998766532222 236788999
Q ss_pred ecCCCCCCceEEEEEEECCCCCC
Q psy12820 133 DEDMFGDSNFIGQATYPVYTNRF 155 (156)
Q Consensus 133 d~~~~~~~~~iG~~~i~l~~l~~ 155 (156)
|.+.+..++++|+..+++..|.+
T Consensus 170 dn~~~~~~~sqGq~r~~lkKl~p 192 (362)
T KOG1013|consen 170 DNDKKTHNESQGQSRVSLKKLKP 192 (362)
T ss_pred cCcccccccCcccchhhhhccCh
Confidence 99988889999999988877653
No 130
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.88 E-value=9.6e-05 Score=52.30 Aligned_cols=92 Identities=24% Similarity=0.290 Sum_probs=61.3
Q ss_pred EEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEe---CCCccEEEEEEEecC
Q psy12820 59 KVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVH---NPEMALLRFVCQDED 135 (156)
Q Consensus 59 ~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~---~~~~~~l~~~V~d~~ 135 (156)
.++|+|+++.++.. .....+-||++.+...+..-.....|+...-+ -.+.|||.+.|++. .|..+.|.|.||+..
T Consensus 9 ~f~i~i~~~~~~~~-~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~-~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNA-AERTMKVGVQAGLFHGGESLCKTVKTSEVSGK-NDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCcc-CCCCceEEEEEEEEECCEEccCceEccccCCC-CccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 68999999998875 22345668888776422111113355554443 57999999999876 344569999999864
Q ss_pred CCC----------------CCceEEEEEEECCC
Q psy12820 136 MFG----------------DSNFIGQATYPVYT 152 (156)
Q Consensus 136 ~~~----------------~~~~iG~~~i~l~~ 152 (156)
... ....||++.++|-+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEc
Confidence 321 23589999988744
No 131
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=97.86 E-value=0.00013 Score=50.63 Aligned_cols=93 Identities=17% Similarity=0.194 Sum_probs=61.0
Q ss_pred EEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeC---CCccEEEEEEEecC
Q psy12820 59 KVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN---PEMALLRFVCQDED 135 (156)
Q Consensus 59 ~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~---~~~~~l~~~V~d~~ 135 (156)
.++|+|.+..++........+-||++.+...+........|...... .++.|||.+.|++.. |..+.|.|+||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~-~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFS-TSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCC-CCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 57777887777654333446678888876432111213344433332 579999999998653 44469999999976
Q ss_pred CCC--CCceEEEEEEECCC
Q psy12820 136 MFG--DSNFIGQATYPVYT 152 (156)
Q Consensus 136 ~~~--~~~~iG~~~i~l~~ 152 (156)
..+ .+..||++.++|=+
T Consensus 88 ~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred cCCCCcceEEEEEeEEeEc
Confidence 543 45799999998744
No 132
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=97.82 E-value=0.00021 Score=49.84 Aligned_cols=90 Identities=14% Similarity=0.179 Sum_probs=60.3
Q ss_pred EEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeC---CCccEEEEEEEecC
Q psy12820 59 KVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN---PEMALLRFVCQDED 135 (156)
Q Consensus 59 ~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~---~~~~~l~~~V~d~~ 135 (156)
.++|+|+++.++... ...+-||++.+......-.....|+.+.. .++.|||-+.|++.. |..+.|.|+||+..
T Consensus 9 ~~~v~i~~~~~~~~~--~~~~l~V~v~l~~g~~~L~~pv~T~~v~~--~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 9 NLRIKILCATYVNVN--DIDKIYVRTGIYHGGEPLCDNVNTQRVPC--SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CeEEEEEeeccCCCC--CcCeEEEEEEEEECCEEccCeeEecccCC--CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 588999999988754 34578999987642211111234444443 479999999998764 44469999999865
Q ss_pred CCC----CCceEEEEEEECCC
Q psy12820 136 MFG----DSNFIGQATYPVYT 152 (156)
Q Consensus 136 ~~~----~~~~iG~~~i~l~~ 152 (156)
... ....||.+.++|-+
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred cccCCCCceEEEEEEEEEEEC
Confidence 321 12469999998744
No 133
>KOG1327|consensus
Probab=97.73 E-value=8.1e-05 Score=60.40 Aligned_cols=89 Identities=19% Similarity=0.319 Sum_probs=64.3
Q ss_pred eeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCce-EEEE-E-eCCCccEEEEEEEecCCCCCC
Q psy12820 65 LAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNES-CEFT-V-HNPEMALLRFVCQDEDMFGDS 140 (156)
Q Consensus 65 ~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~-f~f~-v-~~~~~~~l~~~V~d~~~~~~~ 140 (156)
++|.+|..++ .+.+|||..+.-...+......++|.+++++ ++|.|.+. ...+ + .......+.+.+||++..+++
T Consensus 143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~-l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~ 221 (529)
T KOG1327|consen 143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNT-LNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGKH 221 (529)
T ss_pred eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccC-CCCcccccccchhhhcccCCCCceEEEEeccCCCCCc
Confidence 3467777666 7889999988765332223346799999998 99999864 2222 1 222234778999999999999
Q ss_pred ceEEEEEEECCCCC
Q psy12820 141 NFIGQATYPVYTNR 154 (156)
Q Consensus 141 ~~iG~~~i~l~~l~ 154 (156)
++||++..++..++
T Consensus 222 ~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 222 DLIGKFQTTLSELQ 235 (529)
T ss_pred CceeEecccHHHhc
Confidence 99999998887775
No 134
>KOG1326|consensus
Probab=97.57 E-value=1.5e-05 Score=68.13 Aligned_cols=89 Identities=25% Similarity=0.300 Sum_probs=67.9
Q ss_pred eeeEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEE-EeCCC--------c
Q psy12820 55 VTRVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT-VHNPE--------M 124 (156)
Q Consensus 55 ~~~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~-v~~~~--------~ 124 (156)
.....+++.|..|+.|...+ .+.+|||..+.+.+- .+.|.++.++ +||.|+++..|. +.-.. .
T Consensus 203 ~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~q------s~~T~~v~~t-l~ptwdq~~~f~~~ei~ge~~~~~~~p 275 (1105)
T KOG1326|consen 203 VIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQ------SKETEVVPGT-LNPTWDQTIIFDEVEIYGEAHLVLKNP 275 (1105)
T ss_pred hhhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccc------cceeEeecCc-CCCCccceeeccceeecCccchhhcCC
Confidence 34456777788888888766 668999999987632 5678888888 999999998886 33111 1
Q ss_pred cEEEEEEEecCCCCCCceEEEEEEEC
Q psy12820 125 ALLRFVCQDEDMFGDSNFIGQATYPV 150 (156)
Q Consensus 125 ~~l~~~V~d~~~~~~~~~iG~~~i~l 150 (156)
..+.|++||.+..+.++|+|......
T Consensus 276 pi~v~e~yd~dr~g~~ef~gr~~~~p 301 (1105)
T KOG1326|consen 276 PIRVFEVYDLDRSGINEFKGRKKQRP 301 (1105)
T ss_pred CeEEEEeehhhhhchHHhhcccccce
Confidence 26789999999999999999866543
No 135
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=97.55 E-value=0.00056 Score=47.76 Aligned_cols=76 Identities=18% Similarity=0.226 Sum_probs=51.9
Q ss_pred CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeC---CCccEEEEEEEecCCCCCCceEEEEEEECCC
Q psy12820 76 CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN---PEMALLRFVCQDEDMFGDSNFIGQATYPVYT 152 (156)
Q Consensus 76 ~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~---~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~ 152 (156)
..++-||++.+...+..-.....|+...-+ ..+.|||-+.|+|.. |..+.|+|+||+.+..++...+|.+.++|-+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~-~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFK-NRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCC-CCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 346778888876432111113345444444 578999999999774 3446999999998765556799999998744
No 136
>KOG2060|consensus
Probab=97.53 E-value=3e-05 Score=60.10 Aligned_cols=94 Identities=18% Similarity=0.275 Sum_probs=67.3
Q ss_pred eEEEEEEEeeeeecccCC--CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEe-
Q psy12820 57 RVKVLLRVLAARHLTRSG--RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQD- 133 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~--~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d- 133 (156)
...+.|.|+.|++|.... ...++|||+|++++.+. +..+.+|+...++ ++|.+-....|.-. |....|.+.||.
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~-c~ak~ktk~A~kT-~~plyqq~l~f~~s-p~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGF-CIAKKKTKSARKT-LDPLYQQQLSFDQS-PPGKYLQGTVWGD 344 (405)
T ss_pred cCceeEEEEecccccccCCcccccCceeEEEEcCCCc-eeccccccccccc-CchhhhhhhhhccC-CCccEEEEEEecc
Confidence 357999999999997653 55789999999986532 3347889988888 78877777777644 335688899985
Q ss_pred cCCCCCCceEEEEEEECCCC
Q psy12820 134 EDMFGDSNFIGQATYPVYTN 153 (156)
Q Consensus 134 ~~~~~~~~~iG~~~i~l~~l 153 (156)
+.....+.|+|.+.+-+.+|
T Consensus 345 ygRmd~k~fmg~aqi~l~eL 364 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDEL 364 (405)
T ss_pred ccccchHHHhhHHHHHhhhh
Confidence 45555555777665554443
No 137
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=97.34 E-value=0.0025 Score=45.27 Aligned_cols=92 Identities=16% Similarity=0.152 Sum_probs=56.3
Q ss_pred EEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeC---CCccEEEEEEEecC
Q psy12820 59 KVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN---PEMALLRFVCQDED 135 (156)
Q Consensus 59 ~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~---~~~~~l~~~V~d~~ 135 (156)
.++|+|.++..+.........-||++.+.... ......+|+...-+ -++.|||-+.|++.. |..+.|.|.||+..
T Consensus 11 ~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~-~~l~~~~T~~~~~~-~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIPVLPRNTDLTVFVEANIQHGQ-QVLCQRRTSPKPFT-EEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeecccCcCCCCceEEEEEEEEEECC-eecccceeeccCCC-CCccccccEECccccccCChhhEEEEEEEEEe
Confidence 57778888763322222233467887766421 11113355555544 679999999998764 44469999999852
Q ss_pred CC----------------CCCceEEEEEEECCC
Q psy12820 136 MF----------------GDSNFIGQATYPVYT 152 (156)
Q Consensus 136 ~~----------------~~~~~iG~~~i~l~~ 152 (156)
.. ..+..||++.+.|-+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 89 APALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred cCcccccccccccccccccccceEEEEEEEEEc
Confidence 11 124578888887744
No 138
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=97.32 E-value=0.0014 Score=46.26 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=62.0
Q ss_pred EEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEec--C-CCCCCeeCceEEEEEe---CCCccEEEEE
Q psy12820 58 VKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVS--D-NGFNPTWNESCEFTVH---NPEMALLRFV 130 (156)
Q Consensus 58 ~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~--~-~~~nP~w~e~f~f~v~---~~~~~~l~~~ 130 (156)
..+.|+|.++.+++..- ....+-||.+.+......-.....|+... + -...+.|||-+.|++. .|..+.|.|+
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 46889999999988653 33567899998764321111122333221 1 1125779999999865 3445699999
Q ss_pred EEecCCCC---------CCceEEEEEEECCC
Q psy12820 131 CQDEDMFG---------DSNFIGQATYPVYT 152 (156)
Q Consensus 131 V~d~~~~~---------~~~~iG~~~i~l~~ 152 (156)
+|+....+ .+..||++.++|=+
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEc
Confidence 99865443 34689999998854
No 139
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=97.00 E-value=0.0066 Score=41.41 Aligned_cols=55 Identities=25% Similarity=0.310 Sum_probs=38.1
Q ss_pred EeEEecCCCCCCeeCceEEEEEe---CCCccEEEEEEEecCCCCCC----ceEEEEEEECCC
Q psy12820 98 TTKTVSDNGFNPTWNESCEFTVH---NPEMALLRFVCQDEDMFGDS----NFIGQATYPVYT 152 (156)
Q Consensus 98 kT~~~~~~~~nP~w~e~f~f~v~---~~~~~~l~~~V~d~~~~~~~----~~iG~~~i~l~~ 152 (156)
.|+...-+..++.|+|.+.|++. .|..+.|.|+||+.+..... ..||++.++|-+
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd 84 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFD 84 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeEC
Confidence 44433322258999999999976 45557999999987655444 689999999854
No 140
>KOG3837|consensus
Probab=96.80 E-value=0.00065 Score=53.58 Aligned_cols=99 Identities=14% Similarity=0.211 Sum_probs=73.3
Q ss_pred CceeeEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC-c------
Q psy12820 53 VGVTRVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE-M------ 124 (156)
Q Consensus 53 ~~~~~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~-~------ 124 (156)
.+.....|.+.|+++++++-.. ..-.|-||++++.-.. |...+.+|.+++++ .+|.|+|.|.+.+.... .
T Consensus 362 ~dl~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~n-D~~qk~kt~vik~t-~SPdfde~fklni~rg~~~nr~fqR 439 (523)
T KOG3837|consen 362 EDLKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLEN-DSRQKLKTDVIKVT-PSPDFDEDFKLNIRRGPGLNREFQR 439 (523)
T ss_pred cccchhHhHHHHhhcccCCCCCCchhHHhhhcccccccc-cccccCccceeeCC-CCCCcccceeeeccCCCcccHHHHH
Confidence 3455667888999998887554 3345779998876554 44448899999998 89999999999876411 1
Q ss_pred ----cEEEEEEEecCCC-CCCceEEEEEEECCCC
Q psy12820 125 ----ALLRFVCQDEDMF-GDSNFIGQATYPVYTN 153 (156)
Q Consensus 125 ----~~l~~~V~d~~~~-~~~~~iG~~~i~l~~l 153 (156)
.-++|++++...+ .+|.++|.+.+.+.-|
T Consensus 440 ~fkr~g~kfeifhkggf~rSdkl~gt~nikle~L 473 (523)
T KOG3837|consen 440 RFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEIL 473 (523)
T ss_pred HHHhcCeeEEEeeccccccccceeceeeeeehhh
Confidence 1588999998654 5677999999877544
No 141
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=96.66 E-value=0.063 Score=38.48 Aligned_cols=55 Identities=18% Similarity=0.321 Sum_probs=40.2
Q ss_pred ceEEeEEecCCCCCCeeCceEEEEEeCC--CccEEEEEEEecCCCC--CCceEEEEEEEC
Q psy12820 95 LKLTTKTVSDNGFNPTWNESCEFTVHNP--EMALLRFVCQDEDMFG--DSNFIGQATYPV 150 (156)
Q Consensus 95 ~~~kT~~~~~~~~nP~w~e~f~f~v~~~--~~~~l~~~V~d~~~~~--~~~~iG~~~i~l 150 (156)
..++|-+...+ -+|.|+|++.+.++.. +.+.|.|++++..... ....+|-+.+||
T Consensus 53 se~~S~V~yH~-~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 53 SEYRSFVLYHN-NSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred ceEEEEEEEcC-CCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 47888888877 7999999999887754 3357888877643221 125789888887
No 142
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=96.53 E-value=0.12 Score=36.68 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=33.3
Q ss_pred eEEeEEecCCCCCCeeCceEEEEEeCCC--ccEEEEEEEecCCCC-C--CceEEEEEEECCC
Q psy12820 96 KLTTKTVSDNGFNPTWNESCEFTVHNPE--MALLRFVCQDEDMFG-D--SNFIGQATYPVYT 152 (156)
Q Consensus 96 ~~kT~~~~~~~~nP~w~e~f~f~v~~~~--~~~l~~~V~d~~~~~-~--~~~iG~~~i~l~~ 152 (156)
...|.+...+ .+|.|+|+|.+++..+. ...|.|++++...-. + ...+|-+.+||-+
T Consensus 60 ~~~S~v~yh~-k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHN-KNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT--SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecC-CCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 5677777777 89999999999887543 358889998854322 1 1699999999864
No 143
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.24 E-value=0.16 Score=36.59 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=40.2
Q ss_pred ceEEeEEecCCCCCCeeCceEEEEEeCC--CccEEEEEEEecCCC----CCCceEEEEEEECC
Q psy12820 95 LKLTTKTVSDNGFNPTWNESCEFTVHNP--EMALLRFVCQDEDMF----GDSNFIGQATYPVY 151 (156)
Q Consensus 95 ~~~kT~~~~~~~~nP~w~e~f~f~v~~~--~~~~l~~~V~d~~~~----~~~~~iG~~~i~l~ 151 (156)
..++|-+...+ -+|.|+|++.+.+... ..+.|.|++++.... ..+..+|-+.+||-
T Consensus 53 se~~S~V~Yh~-~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQV-DKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeec-CCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 47788887767 7899999998887744 335888998774321 12347898888873
No 144
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=96.09 E-value=0.039 Score=35.36 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=45.1
Q ss_pred EEEEEeeeeecccCCCC-CCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeC---CCccEEEEEEEecC
Q psy12820 60 VLLRVLAARHLTRSGRC-TTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN---PEMALLRFVCQDED 135 (156)
Q Consensus 60 L~v~v~~a~~L~~~~~~-~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~---~~~~~l~~~V~d~~ 135 (156)
+.+.+....+....... ..+-||++.+...+..-.....|+.+.-. ..+.|||-+.|++.. |..+.|.|++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~-~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFF-PSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCC-CCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 44555665555443322 24788998876432111113345544433 568999999998663 44469999999854
No 145
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.80 E-value=0.071 Score=37.02 Aligned_cols=92 Identities=16% Similarity=0.198 Sum_probs=62.9
Q ss_pred eeEEEEEEEeeeeecccCCC---CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCC------c--
Q psy12820 56 TRVKVLLRVLAARHLTRSGR---CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPE------M-- 124 (156)
Q Consensus 56 ~~~~L~v~v~~a~~L~~~~~---~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~------~-- 124 (156)
....|.++|+.|+-.-..-. +..+..+.+.+.- ..+ .++|+.+..+ .+|.++|.|-|++.... .
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f---~~Q-RF~S~~Vp~~-~eP~f~e~Flf~l~~~~~~~~~~~~~ 81 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHF---RGQ-RFRSKPVPCA-CEPDFNEEFLFELPRDSFGAGSTATT 81 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEe---cCc-eEecCCcccc-cCCCCCCcEEEEecccccccccchhH
Confidence 34679999999875433211 4455556665542 234 8899999988 99999999999987543 1
Q ss_pred -----cEEEEEEEecCCCCCCceEEEEEEECCC
Q psy12820 125 -----ALLRFVCQDEDMFGDSNFIGQATYPVYT 152 (156)
Q Consensus 125 -----~~l~~~V~d~~~~~~~~~iG~~~i~l~~ 152 (156)
.-+.+.|-..|..+...++|+..+....
T Consensus 82 lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~ 114 (156)
T PF15627_consen 82 LLSISDPIHIVLIRTDPSGETTLVGSHFLDWRK 114 (156)
T ss_pred hhcCCCceEEEEEEecCCCceEeeeeceehHHH
Confidence 1466667666666666788888776543
No 146
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.03 E-value=0.66 Score=31.26 Aligned_cols=92 Identities=18% Similarity=0.204 Sum_probs=54.7
Q ss_pred eEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeC---C-----CccEEE
Q psy12820 57 RVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN---P-----EMALLR 128 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~---~-----~~~~l~ 128 (156)
...+.|+|....+++. .+..+.|.+........ ...|.........-.|+|.|.+.+.. . +...+.
T Consensus 6 kf~~~l~i~~l~~~p~-----~~~~v~v~wkr~~~~~~-~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~ 79 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS-----SNGKVFVKWKRGDKSKG-SGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK 79 (143)
T ss_pred eEEEEEEEEEeECcCC-----CCCEEEEEEEECCCCcc-ceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence 4568888888888875 22333343332211110 23343333322578999999888652 1 112788
Q ss_pred EEEEecCCCCCCceEEEEEEECCCCC
Q psy12820 129 FVCQDEDMFGDSNFIGQATYPVYTNR 154 (156)
Q Consensus 129 ~~V~d~~~~~~~~~iG~~~i~l~~l~ 154 (156)
|.|+.....++...+|.+.+.|++..
T Consensus 80 ~~v~~~~~~~~k~~lG~~~inLaey~ 105 (143)
T PF10358_consen 80 FSVFEVDGSGKKKVLGKVSINLAEYA 105 (143)
T ss_pred EEEEEecCCCccceEEEEEEEHHHhh
Confidence 88888753333358999999987653
No 147
>KOG1327|consensus
Probab=94.54 E-value=0.094 Score=43.11 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=47.4
Q ss_pred eEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCC----CCCceEEEEEEECCCC
Q psy12820 96 KLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMF----GDSNFIGQATYPVYTN 153 (156)
Q Consensus 96 ~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~----~~~~~iG~~~i~l~~l 153 (156)
..+|.++.+. +||.|-+.|.++........++|.+++-+.. ...+|+|++...++.+
T Consensus 42 ~~rte~i~~~-~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~i 102 (529)
T KOG1327|consen 42 VGRTEVIRNV-LNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQI 102 (529)
T ss_pred ccceeeeecc-CCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhh
Confidence 4489999998 9999999998888887788999999986543 4568999998887765
No 148
>KOG1452|consensus
Probab=93.93 E-value=0.15 Score=39.36 Aligned_cols=78 Identities=15% Similarity=0.149 Sum_probs=54.8
Q ss_pred eEEEEEEEeeeeecccCC--CC-CCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEe
Q psy12820 57 RVKVLLRVLAARHLTRSG--RC-TTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQD 133 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~--~~-~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d 133 (156)
...|.+.++.+++|.... .+ ..+-|+.++. |.+.+.||.+.... .--.|.|+|+.++.+. ..+.+-||.
T Consensus 50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~-----drqh~aRt~vrs~~-~~f~w~e~F~~Dvv~~--~vl~~lvyS 121 (442)
T KOG1452|consen 50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEP-----DRQHPARTRVRSSG-PGFAWAEDFKHDVVNI--EVLHYLVYS 121 (442)
T ss_pred cceEEEEEecccccccChhccCceeeeeeeeee-----cccCccccccccCC-CCccchhhceeecccc--eeeeEEEee
Confidence 456889999999987542 23 4567887763 45546677765554 7778999999987764 367788888
Q ss_pred cCCCCCCce
Q psy12820 134 EDMFGDSNF 142 (156)
Q Consensus 134 ~~~~~~~~~ 142 (156)
|+...++++
T Consensus 122 W~pq~RHKL 130 (442)
T KOG1452|consen 122 WPPQRRHKL 130 (442)
T ss_pred cCchhhccc
Confidence 876655553
No 149
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=92.80 E-value=0.71 Score=32.67 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=38.9
Q ss_pred EEeEEecCCCCCCeeCceEEEEEeCC--CccEEEEEEEecCCC-----CCCceEEEEEEECCC
Q psy12820 97 LTTKTVSDNGFNPTWNESCEFTVHNP--EMALLRFVCQDEDMF-----GDSNFIGQATYPVYT 152 (156)
Q Consensus 97 ~kT~~~~~~~~nP~w~e~f~f~v~~~--~~~~l~~~V~d~~~~-----~~~~~iG~~~i~l~~ 152 (156)
.-+.++..+ -+|.|+|++.+.++.. +...|.|++++-+.. .....+|-+.+||-+
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 334445555 6899999998887643 345888999885422 335689999999864
No 150
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=92.26 E-value=0.97 Score=32.19 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=40.3
Q ss_pred ceEEeEEecCCCCCCeeCceEEEEEeCC--CccEEEEEEEecCCCC------CCceEEEEEEECC
Q psy12820 95 LKLTTKTVSDNGFNPTWNESCEFTVHNP--EMALLRFVCQDEDMFG------DSNFIGQATYPVY 151 (156)
Q Consensus 95 ~~~kT~~~~~~~~nP~w~e~f~f~v~~~--~~~~l~~~V~d~~~~~------~~~~iG~~~i~l~ 151 (156)
....|.+...+ -+|.|+|++.+++... +...|.|+.++-+... ....+|-+.+||-
T Consensus 54 ~~~~S~V~yHn-k~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 54 TEAYTAVTYHN-KSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eeEEEEEEEeC-CCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 46788888888 8999999988887643 3458889988743221 1356998888873
No 151
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=91.54 E-value=2.7 Score=29.48 Aligned_cols=68 Identities=12% Similarity=0.135 Sum_probs=46.1
Q ss_pred CCCCEEEEEEecCCCCCCceEEeEEe--cCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEECCC
Q psy12820 77 TTSPFVEVEVLGADYDTGLKLTTKTV--SDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYT 152 (156)
Q Consensus 77 ~~dpyv~v~l~~~~~~~~~~~kT~~~--~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~ 152 (156)
...-|+++.+- ++. ..+|+.. ..+ +.-.++|.|.+++... -..|.+.||.... ..+.+|+++.+|+-.
T Consensus 36 ~~~~~ikl~~N----~k~-V~~T~~~~l~~d-F~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~ 105 (168)
T PF15625_consen 36 KTRYYIKLFFN----DKE-VSRTRSRPLWSD-FRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPG 105 (168)
T ss_pred heeEEEEEEEC----CEE-EEeeeeEecCCC-eEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCC
Confidence 34557777663 222 4444433 333 6677789999998752 3578999999876 456899999999754
No 152
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=90.19 E-value=2.3 Score=30.49 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=40.7
Q ss_pred ceEEeEEecCCCCCCeeCceEEEEEeC--CCccEEEEEEEecCCC---------CCCceEEEEEEECCC
Q psy12820 95 LKLTTKTVSDNGFNPTWNESCEFTVHN--PEMALLRFVCQDEDMF---------GDSNFIGQATYPVYT 152 (156)
Q Consensus 95 ~~~kT~~~~~~~~nP~w~e~f~f~v~~--~~~~~l~~~V~d~~~~---------~~~~~iG~~~i~l~~ 152 (156)
....|.+...+ -+|.|.|++.+.+.. .+...|.|+.++-+.. ..+..+|-+.+||-.
T Consensus 56 ~~~~s~V~yh~-k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHN-QNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcC-CCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 36788888888 899999998887663 3345788999885411 123578988888743
No 153
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=86.04 E-value=4.6 Score=31.80 Aligned_cols=85 Identities=19% Similarity=0.336 Sum_probs=58.5
Q ss_pred EEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCC-------CccEEEEEEE
Q psy12820 60 VLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNP-------EMALLRFVCQ 132 (156)
Q Consensus 60 L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~-------~~~~l~~~V~ 132 (156)
+.|.|++|++.+... ...-.+...+-| . ...|-.+..+ -.|.||..+.+.+... +..-|+++.|
T Consensus 2 ivl~i~egr~F~~~~--~~~~vv~a~~ng-----~-~l~TDpv~~~-~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~ 72 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP--RHPIVVEAKFNG-----E-SLETDPVPHT-ESPQFNTELAWECDRKALKQHRLQRTPIKLQCF 72 (340)
T ss_pred EEEEEecccCCCCCC--CccEEEEEEeCC-----c-eeeecCCCCC-CCceeecceeeeccHHHHHHhhccCCceEEEEE
Confidence 568899999987652 223355555532 2 4566666666 7899998888877632 2236788888
Q ss_pred ecC-CCCCCceEEEEEEECCCC
Q psy12820 133 DED-MFGDSNFIGQATYPVYTN 153 (156)
Q Consensus 133 d~~-~~~~~~~iG~~~i~l~~l 153 (156)
..+ ..+..+.||.+.++|.+.
T Consensus 73 a~~~~~~~re~iGyv~LdLRsa 94 (340)
T PF12416_consen 73 AVDGSTGKRESIGYVVLDLRSA 94 (340)
T ss_pred EecCCCCcceeccEEEEEcccc
Confidence 776 456678999999999876
No 154
>KOG0904|consensus
Probab=85.72 E-value=2.5 Score=37.17 Aligned_cols=75 Identities=20% Similarity=0.212 Sum_probs=40.5
Q ss_pred EEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeC---CCccEEEEEEEe
Q psy12820 58 VKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN---PEMALLRFVCQD 133 (156)
Q Consensus 58 ~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~---~~~~~l~~~V~d 133 (156)
+.++|+++++..+........--+|++.+.....--....+|..+... -+|.||+.+.|++.- |..+.|.+.|+.
T Consensus 343 ~~frI~l~~is~~n~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~-~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNLPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGC-SFPLWNEWLEFDIYIKDLPRMARLCLAIYA 420 (1076)
T ss_pred CceEEEEeeccccCCCcccceEEEEEEEEEECCeehhcccccCCCCCc-cchhccceeEeeeecCCCChhhhheeeeeE
Confidence 457777777765432221112234444443211111112445545544 689999999998763 445677777764
No 155
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=79.07 E-value=11 Score=23.90 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=27.0
Q ss_pred CCCeeCceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEECCC
Q psy12820 107 FNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYT 152 (156)
Q Consensus 107 ~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~ 152 (156)
-+..|+++|.+++.. ...|.+.||-.|- ..+.|-..+.|.+
T Consensus 31 s~q~WDQ~Fti~LdR--sRELEI~VywrD~---RslCav~~lrLEd 71 (98)
T cd08687 31 SNQAWDQSFTLELER--SRELEIAVYWRDW---RSLCAVKFLKLED 71 (98)
T ss_pred ccccccceeEEEeec--ccEEEEEEEEecc---hhhhhheeeEhhh
Confidence 378999999998874 3478888887653 2344444444433
No 156
>KOG0906|consensus
Probab=77.86 E-value=3.4 Score=35.20 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=47.7
Q ss_pred CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCc---cEEEEEEEecCCCCCCceEEEEEEECC
Q psy12820 76 CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEM---ALLRFVCQDEDMFGDSNFIGQATYPVY 151 (156)
Q Consensus 76 ~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~---~~l~~~V~d~~~~~~~~~iG~~~i~l~ 151 (156)
.++|.|++..+...+.....-.+|+...-. ..-.|||=+.+.+..+++ +.+.+++|+....+...|+|..++.+-
T Consensus 45 ~~~~l~~~c~v~~~~~~~~lP~~ts~~~~~-~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf 122 (843)
T KOG0906|consen 45 TSSDLYVTCQVFAEGKPFALPVRTSYKAFS-KRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLF 122 (843)
T ss_pred cchhhhheeeeeccCCcccCCccccccccC-CccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEee
Confidence 356777777665432222222344433322 234499988888876665 489999999876666779998877653
No 157
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=71.11 E-value=9.1 Score=24.83 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=28.9
Q ss_pred eEEeEEecCCCCCCeeCceEEEEEeCCCc-------cEEEEEEEecCCCCCCceEEEEEEECCCC
Q psy12820 96 KLTTKTVSDNGFNPTWNESCEFTVHNPEM-------ALLRFVCQDEDMFGDSNFIGQATYPVYTN 153 (156)
Q Consensus 96 ~~kT~~~~~~~~nP~w~e~f~f~v~~~~~-------~~l~~~V~d~~~~~~~~~iG~~~i~l~~l 153 (156)
.+.|.++. |.+|.+|-+-.|.|...+. ..+.++++..- ..+...+|.+.+++..+
T Consensus 12 tq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~l 73 (107)
T PF11618_consen 12 TQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPL 73 (107)
T ss_dssp -EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHH
T ss_pred eeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhh
Confidence 56677777 4799999998888875443 37888888754 22356899999998754
No 158
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=58.21 E-value=61 Score=22.59 Aligned_cols=85 Identities=11% Similarity=0.110 Sum_probs=51.0
Q ss_pred EEEEEeeeeecccCCCCCCCCEEEEEEecCCC----CCCc-eEEeEEecCC----CCCCeeCceEEEEEeC--CCc-cEE
Q psy12820 60 VLLRVLAARHLTRSGRCTTSPFVEVEVLGADY----DTGL-KLTTKTVSDN----GFNPTWNESCEFTVHN--PEM-ALL 127 (156)
Q Consensus 60 L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~----~~~~-~~kT~~~~~~----~~nP~w~e~f~f~v~~--~~~-~~l 127 (156)
+.-.|.+|.+.. ..+-||+-.+.-.+. +... ...|.+.+.. .-.-+||-.|++.+.. +.. -.|
T Consensus 4 v~G~I~~a~~f~-----~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L 78 (168)
T PF07162_consen 4 VIGEIESAEGFE-----EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQL 78 (168)
T ss_pred EEEEEEEEECCC-----CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceE
Confidence 444567777542 345688776653211 0111 3444444322 1457899887776553 322 389
Q ss_pred EEEEEecCCCCCCceEEEEEEE
Q psy12820 128 RFVCQDEDMFGDSNFIGQATYP 149 (156)
Q Consensus 128 ~~~V~d~~~~~~~~~iG~~~i~ 149 (156)
.|+||..|..+++.+.|-..+.
T Consensus 79 ~l~V~~~D~~gr~~~~GYG~~~ 100 (168)
T PF07162_consen 79 VLQVYSLDSWGRDRVEGYGFCH 100 (168)
T ss_pred EEEEEEEcccCCeEEeEEeEEE
Confidence 9999999999998898865443
No 159
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=56.53 E-value=53 Score=22.64 Aligned_cols=96 Identities=11% Similarity=0.006 Sum_probs=45.9
Q ss_pred EEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCC-CCceEEeEEec-CCCCCCeeCceEEEEEe---CCCccEEEEEEE
Q psy12820 58 VKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYD-TGLKLTTKTVS-DNGFNPTWNESCEFTVH---NPEMALLRFVCQ 132 (156)
Q Consensus 58 ~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~-~~~~~kT~~~~-~~~~nP~w~e~f~f~v~---~~~~~~l~~~V~ 132 (156)
..|+|.|-+.. |... ....|||+.|++....+. -...+.|.+.. ..+..=.|+.+.+++.. .++.+.+.|++.
T Consensus 13 t~l~v~Iekig-lkda-~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~fE~k 90 (147)
T PF14186_consen 13 TYLSVFIEKIG-LKDA-SQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFFEFK 90 (147)
T ss_dssp -EEEEEEEEEE--TTG-GG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEEEEE
T ss_pred ceEEEEEEEEE-ECCh-HHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEEEEE
Confidence 45666666544 4322 345789999998754321 11234444321 11123444555555433 344567778888
Q ss_pred ecCCCC-CCceEEEEEEECCCCCC
Q psy12820 133 DEDMFG-DSNFIGQATYPVYTNRF 155 (156)
Q Consensus 133 d~~~~~-~~~~iG~~~i~l~~l~~ 155 (156)
++..-. +-...|++.+++++++.
T Consensus 91 H~K~kk~k~S~kcw~fme~dei~~ 114 (147)
T PF14186_consen 91 HYKPKKKKTSTKCWAFMELDEIKP 114 (147)
T ss_dssp EEETTTTCEEEEEEEEEEGGG--S
T ss_pred eeeccceeeeeeEEEEEEhhhccC
Confidence 864332 22357888888888764
No 160
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=48.86 E-value=50 Score=19.89 Aligned_cols=24 Identities=8% Similarity=0.275 Sum_probs=17.5
Q ss_pred cEEEEEEEecCCCCCCceEEEEEE
Q psy12820 125 ALLRFVCQDEDMFGDSNFIGQATY 148 (156)
Q Consensus 125 ~~l~~~V~d~~~~~~~~~iG~~~i 148 (156)
....+++|+.+....|++++.+..
T Consensus 12 ~~~~V~L~e~d~~~~Ddll~~~~T 35 (80)
T PF01060_consen 12 KNVKVKLWEDDYFDPDDLLDETKT 35 (80)
T ss_pred CCCEEEEEECCCCCCCceeEEEEE
Confidence 455688888887677788887654
No 161
>KOG1329|consensus
Probab=43.50 E-value=18 Score=32.10 Aligned_cols=70 Identities=14% Similarity=0.124 Sum_probs=47.8
Q ss_pred CCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecCCCCCCceEEEEEEECCCC
Q psy12820 78 TSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTN 153 (156)
Q Consensus 78 ~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l 153 (156)
.++|+.+.+... ...+|....+.--+|.|.+.|..-+...+ ..+.+.+.+.+..+...++|.+.+|+..+
T Consensus 138 ~e~Ylt~~l~~~-----~~~~t~~~~~f~e~s~~~f~~~~~~~h~~-g~v~~~~~~~~~~G~s~~w~~v~~s~~~~ 207 (887)
T KOG1329|consen 138 LENYLTVVLHKA-----RYRRTHVIYEFLENSRWSFSFDIGFAHKA-GYVIFRVKGARVPGWSKRWGRVKISFLQY 207 (887)
T ss_pred ccchheeeechh-----hhhchhhhhcccccchhhhhccccccccc-cEEEEeecCCccccceeEEEEeccchhhh
Confidence 377887776421 14456655554467999998876655443 57889998888777457888888876544
No 162
>KOG4027|consensus
Probab=41.17 E-value=1.2e+02 Score=21.32 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=28.6
Q ss_pred CeeCceEEEEEe--CCCc-cEEEEEEEecCCCCCCceEEEEEEEC
Q psy12820 109 PTWNESCEFTVH--NPEM-ALLRFVCQDEDMFGDSNFIGQATYPV 150 (156)
Q Consensus 109 P~w~e~f~f~v~--~~~~-~~l~~~V~d~~~~~~~~~iG~~~i~l 150 (156)
-+||-.++..+. .|-. ..|.+.|+..|.+|+|-+.|-..+++
T Consensus 64 iv~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GYg~~hi 108 (187)
T KOG4027|consen 64 IVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGYGMLHI 108 (187)
T ss_pred eEEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeeeeeEec
Confidence 456655544433 2222 27889999999999998998766654
No 163
>KOG0694|consensus
Probab=41.16 E-value=3.7 Score=35.03 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=31.8
Q ss_pred CCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCCCccEEEEEEEecC
Q psy12820 76 CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDED 135 (156)
Q Consensus 76 ~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~~~~~l~~~V~d~~ 135 (156)
...+||+.|.+.-. . ...+.+...+ ..|.|+++|...+... ..+.+.|+...
T Consensus 26 ~al~~y~~v~vk~~----~-~~~~~~~~~~-~~~~~~~~F~~~v~~~--~~~~i~v~~~~ 77 (694)
T KOG0694|consen 26 QALQPYLAVELKVK----Q-GAENMTKVEL-RIPELRETFHVEVVAG--GAKNIIVLLKS 77 (694)
T ss_pred hhhhhhheecccee----e-cccccCCCCC-CCchhhhheeeeeecC--CceEEEEEecC
Confidence 34678888776321 1 1122223444 8999999999986643 34566676654
No 164
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=36.78 E-value=1.4e+02 Score=20.46 Aligned_cols=70 Identities=13% Similarity=0.059 Sum_probs=45.0
Q ss_pred CCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEeCC------------CccEEEEEEEecCCCCCCceEE
Q psy12820 77 TTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNP------------EMALLRFVCQDEDMFGDSNFIG 144 (156)
Q Consensus 77 ~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~~~------------~~~~l~~~V~d~~~~~~~~~iG 144 (156)
..|-|..|++.|. .++|+....- +-=.++|.|.|.=..+ +...+++++++..... ...|+
T Consensus 19 ~~~vyL~v~~lg~------~~~T~~~ppv-FPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~~-g~iLA 90 (140)
T PF14909_consen 19 KGDVYLSVCILGQ------YKRTRCLPPV-FPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPPA-GEILA 90 (140)
T ss_pred CCCEEEEEEEccc------EeecccCCCc-CCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCCC-CcEEE
Confidence 4578999998863 5677765554 4445689998873221 1236788888765443 46788
Q ss_pred EEEEECCCCC
Q psy12820 145 QATYPVYTNR 154 (156)
Q Consensus 145 ~~~i~l~~l~ 154 (156)
.+.-...+.-
T Consensus 91 ~ye~n~rDfL 100 (140)
T PF14909_consen 91 YYEENTRDFL 100 (140)
T ss_pred EEeccccceE
Confidence 7776665543
No 165
>KOG4028|consensus
Probab=29.08 E-value=1.1e+02 Score=20.80 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=17.2
Q ss_pred EEEEEEEecCCCCCCceEEE
Q psy12820 126 LLRFVCQDEDMFGDSNFIGQ 145 (156)
Q Consensus 126 ~l~~~V~d~~~~~~~~~iG~ 145 (156)
.|.|+||.+|++++.++-|-
T Consensus 75 rl~~qiw~~dnfgr~eiagy 94 (175)
T KOG4028|consen 75 RLHFQIWHHDNFGRCEIAGY 94 (175)
T ss_pred eeeeeeeecCcccceeeccc
Confidence 78899999999998877664
No 166
>PF10008 DUF2251: Uncharacterized protein conserved in bacteria (DUF2251); InterPro: IPR014449 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.42 E-value=27 Score=22.25 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=13.4
Q ss_pred hccccccccCCceeEEe
Q psy12820 18 QVNHAKFRMNGGCGYLL 34 (156)
Q Consensus 18 ~~n~~~F~~ng~~Gyvl 34 (156)
.=..++|+.+|..||.=
T Consensus 10 ~~~~vVFEDdGeTGYFY 26 (97)
T PF10008_consen 10 GPYAVVFEDDGETGYFY 26 (97)
T ss_pred CCEEEEEEeCCCcEEEE
Confidence 33568999999999963
No 167
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=26.62 E-value=28 Score=25.24 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=14.7
Q ss_pred hccccccc-cCCceeEEecCC
Q psy12820 18 QVNHAKFR-MNGGCGYLLRPA 37 (156)
Q Consensus 18 ~~n~~~F~-~ng~~GyvlKP~ 37 (156)
.-+.+..+ .|+.|||+++|.
T Consensus 138 Pp~~g~VRa~n~~~G~~i~pl 158 (204)
T cd08904 138 PPSSNYIRGYNHPCGYVCSPL 158 (204)
T ss_pred CCCCCcEEEeeeccEEEEEEC
Confidence 34455665 788899999994
No 168
>PF04181 RPAP2_Rtr1: Rtr1/RPAP2 family; InterPro: IPR007308 This entry represents a domain found in PAP2 (RNAP II associated polypeptide) protein and the yeast Rtr1 proteins. Its function is not known however it is thought to be a zinc finger.
Probab=24.66 E-value=24 Score=21.31 Aligned_cols=12 Identities=50% Similarity=0.769 Sum_probs=9.0
Q ss_pred CCceeEEecCCc
Q psy12820 27 NGGCGYLLRPAF 38 (156)
Q Consensus 27 ng~~GyvlKP~~ 38 (156)
+|.|||.|=+..
T Consensus 20 ~~~CGYplC~~~ 31 (79)
T PF04181_consen 20 NGLCGYPLCSNP 31 (79)
T ss_pred CCCCCCccCCCC
Confidence 688999985543
No 169
>KOG0905|consensus
Probab=24.37 E-value=1.3e+02 Score=28.18 Aligned_cols=98 Identities=17% Similarity=0.229 Sum_probs=57.9
Q ss_pred eEEEEEEEeeeeecccCC-CCCCCCEEEEEEecCCCCCCc-eEEeEEecCCCCCCe--eCceEEEEE---eCCCccEEEE
Q psy12820 57 RVKVLLRVLAARHLTRSG-RCTTSPFVEVEVLGADYDTGL-KLTTKTVSDNGFNPT--WNESCEFTV---HNPEMALLRF 129 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~-~~~~dpyv~v~l~~~~~~~~~-~~kT~~~~~~~~nP~--w~e~f~f~v---~~~~~~~l~~ 129 (156)
...|.++|.++.+++..= ..-.|-|..+++.....+-.+ .+..+++...++-|. |++-..|++ ..|..+.|.+
T Consensus 634 s~~L~ftv~a~H~ip~~W~s~yedfyl~~~l~hg~k~l~~p~~t~k~~~~~~~F~ri~~d~~i~Fp~~i~~lPREt~L~~ 713 (1639)
T KOG0905|consen 634 SDFLQFTVYAAHRIPENWVSQYEDFYLSCSLSHGTKDLDKPNQTPKTITSKHFFPRIPWDLYIKFPRQICQLPRETRLTV 713 (1639)
T ss_pred ccceeeeeecccCCChHhhhhhhhheEEEeeecCceeccccccccccccccccccccchhhhhcchHHHhhCChhheEEE
Confidence 457899999998887642 335577888877533221110 111122222235555 887777763 3565668888
Q ss_pred EEEecC--CCCCC----------ceEEEEEEECCCCC
Q psy12820 130 VCQDED--MFGDS----------NFIGQATYPVYTNR 154 (156)
Q Consensus 130 ~V~d~~--~~~~~----------~~iG~~~i~l~~l~ 154 (156)
+++.-- +.+.+ ..+|++++||-+-+
T Consensus 714 tL~G~~~~s~gan~d~n~err~~~~LGw~slpLfdf~ 750 (1639)
T KOG0905|consen 714 TLFGIVRASAGANADQNKERRVPEALGWCSLPLFDFR 750 (1639)
T ss_pred EEeeeecCCCCCCchhcccccchhhhheeeccccchh
Confidence 887531 12222 57999999986643
No 170
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=24.14 E-value=38 Score=20.81 Aligned_cols=13 Identities=31% Similarity=0.434 Sum_probs=10.4
Q ss_pred cCCceeEEecCCc
Q psy12820 26 MNGGCGYLLRPAF 38 (156)
Q Consensus 26 ~ng~~GyvlKP~~ 38 (156)
+.|..||+.||..
T Consensus 91 ~~g~~~~l~kp~~ 103 (112)
T PF00072_consen 91 RAGADDYLSKPFS 103 (112)
T ss_dssp HTTESEEEESSSS
T ss_pred HCCCCEEEECCCC
Confidence 4578999999964
No 171
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=23.88 E-value=37 Score=24.72 Aligned_cols=12 Identities=33% Similarity=0.819 Sum_probs=10.6
Q ss_pred cCCceeEEecCC
Q psy12820 26 MNGGCGYLLRPA 37 (156)
Q Consensus 26 ~ng~~GyvlKP~ 37 (156)
.|+.|||+++|.
T Consensus 145 en~p~g~i~~Pl 156 (202)
T cd08902 145 FNHPCGWFCVPL 156 (202)
T ss_pred cccccEEEEEEC
Confidence 689999999994
No 172
>KOG4269|consensus
Probab=23.70 E-value=53 Score=29.46 Aligned_cols=58 Identities=22% Similarity=0.269 Sum_probs=38.6
Q ss_pred eEEEEEEEeeeeecccCCCCCCCCEEEEEEecCCCCCCceEEeEEecCCCCCCeeCceEEEEEe
Q psy12820 57 RVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVH 120 (156)
Q Consensus 57 ~~~L~v~v~~a~~L~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~nP~w~e~f~f~v~ 120 (156)
...+.+.+.+|..+.. ....||...+..-+.... +.+|+++.++ ..|.||+.++..+.
T Consensus 758 ygflh~~vhsat~lkq----s~~lY~Td~v~e~~~~~s-~~st~~iadT-~~~~~npe~hv~~~ 815 (1112)
T KOG4269|consen 758 YGFLHVIVHSATGLKQ----SRNLYCTDEVDEFGYFVS-KASTRVIADT-AEPQWNPEKHVPVI 815 (1112)
T ss_pred ccceeeeecccccccc----ccceeeehhhhhhccccc-cccceeeecc-cCCCCChhcccchh
Confidence 4567777777766642 234566655433233334 7789999998 89999998887654
Done!