RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12820
(156 letters)
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 135 bits (340), Expect = 5e-38
Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 6/142 (4%)
Query: 14 NKAMQVNHAKFRMNGGCGYLLRPAFMFSESY--DPYDPTSLVGVTRVKVLLRVLAARHLT 71
M V F+ NGGCGY+L+PAF+ + + T ++ +R+++ + L
Sbjct: 451 GPEMDVYLGCFQDNGGCGYVLKPAFLRDPNTTFNSRALTQGPWWRPERLRVRIISGQQLP 510
Query: 72 RSGRCTTS---PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMALLR 128
+ + S P V VE+ G DTG T +++NGFNP W+ EF V P++AL+R
Sbjct: 511 KVNKNKNSIVDPKVIVEIHGVGRDTG-SRQTAVITNNGFNPRWDMEFEFEVTVPDLALVR 569
Query: 129 FVCQDEDMFGDSNFIGQATYPV 150
F+ +D D ++FIGQ+T P
Sbjct: 570 FMVEDYDSSSKNDFIGQSTIPW 591
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 122 bits (306), Expect = 3e-33
Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 12/142 (8%)
Query: 14 NKAMQVNHAKFRMNGGCGYLLRPAFM--FSESYDPYDPTSLVGVTRVKVLLRVLAARHLT 71
+ AM VN F NG GYLL+P FM + +DP+ +++ GV + +++++A+ L+
Sbjct: 604 DIAMCVNLGVFEYNGCSGYLLKPEFMRKLDKRFDPFTESTVDGVVAGTIEIKIISAQFLS 663
Query: 72 RSGRCTTSPFVEVEVLGADYDTGLK-LTTKTVSDNGFNPTWNESCEF--TVHNPEMALLR 128
S +VEVE+ G DT K TK + +NG +P ++E V P++A++R
Sbjct: 664 DK---QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVR 720
Query: 129 FVCQDEDMFGDSNFIGQATYPV 150
+ +E + FIG P+
Sbjct: 721 IIVSEE----NGKFIGHRVMPL 738
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 120 bits (301), Expect = 1e-32
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 14 NKAMQVNHAKFRMNGGCGYLLRPAFMFSE--SYDPYDPTSLVGVTRVKVLLRVLAARHLT 71
+ AMQ+N F NG GYLL+P FM S+DP+ + G+ + ++V++ + L+
Sbjct: 679 DVAMQLNAGVFEYNGRSGYLLKPEFMRRPDKSFDPFTEVIVDGIVANALRVKVISGQFLS 738
Query: 72 RSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNES-CEF-TVHNPEMALLRF 129
+VEV++ G DT K T+T N FNP W+E +F V P +A LR
Sbjct: 739 DR---KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRI 795
Query: 130 VCQDEDMFGDSNFIGQATYPV 150
+E F+G PV
Sbjct: 796 AAFEE----GGKFVGHRILPV 812
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 113 bits (284), Expect = 3e-30
Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 12/142 (8%)
Query: 14 NKAMQVNHAKFRMNGGCGYLLRPAFMFSESY--DPYDPTSLVGVTRVKVLLRVLAARHLT 71
+ MQ N A F NG GYLL+ FM +P+ + V + + V++ + L+
Sbjct: 632 DLPMQQNMAVFEFNGQSGYLLKHEFMRRPDKQFNPFSVDRIDVVVATTLSITVISGQFLS 691
Query: 72 RSGRCTTSPFVEVEVLGADYDTGLKLTTKT-VSDNGFNPTWNESCE--FTVHNPEMALLR 128
+ +VEVE+ G D + TK S N NP W E + PE+A LR
Sbjct: 692 ER---SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLR 748
Query: 129 FVCQDEDMFGDSNFIGQATYPV 150
+E + F+G P+
Sbjct: 749 VAVMEE----GNKFLGHRIIPI 766
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 70.1 bits (172), Expect = 2e-16
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 59 KVLLRVLAARHLTRSG---RCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNES 114
K + VL A +T+ T P+VE+ + + T+ +++ NP WNE+
Sbjct: 4 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFIST---TPDSRKRTRHFNND-INPVWNET 59
Query: 115 CEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
EF + + +L D + D +G AT+ V
Sbjct: 60 FEFILDPNQENVLEITLMDANYVMDE-TLGTATFTV 94
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 69.7 bits (171), Expect = 3e-16
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 12/99 (12%)
Query: 53 VGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTW 111
G V ++ +A+ L + P+V++ + G P W
Sbjct: 9 HGTLEVVLV----SAKGLEDADFLNNMDPYVQLTCRTQ------DQKSNVAEGMGTTPEW 58
Query: 112 NESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
NE+ FTV L+ D+D+ + + +G+AT P+
Sbjct: 59 NETFIFTVSEGT-TELKAKIFDKDVGTEDDAVGEATIPL 96
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 69.4 bits (170), Expect = 5e-16
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 11/113 (9%)
Query: 39 MFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKL 97
+F D + + RV+V+ A L + S P+V V + +
Sbjct: 9 VFGLLEDEENSRIV----RVRVI----AGIGLAKKDILGASDPYVRVTLYDPMNGVLTSV 60
Query: 98 TTKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
TKT+ + NP WNE F VH + L F DE+ +F+GQ P+
Sbjct: 61 QTKTIKKS-LNPKWNEEILFRVHPQQ-HRLLFEVFDENRLTRDDFLGQVDVPL 111
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 68.8 bits (168), Expect = 2e-15
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 12/110 (10%)
Query: 42 ESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTK 100
E ++ V RVKV+ A L + S P+V V + + TK
Sbjct: 1 ELHNDD-----TRVVRVKVI----AGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTK 51
Query: 101 TVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
T+ + NP WNE F V + F DE+ +F+GQ P+
Sbjct: 52 TIKKS-LNPKWNEEILFRVLPQR-HRILFEVFDENRLTRDDFLGQVDVPL 99
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 65.4 bits (160), Expect = 1e-14
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 13/105 (12%)
Query: 47 YDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDN 105
VG+ +V +VL A L + S PF +E LG D +L T TV N
Sbjct: 6 SGDVKDVGILQV----KVLKAADLLAADFSGKSDPFCLLE-LGND-----RLQTHTVYKN 55
Query: 106 GFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
NP WN+ F + + +L DED +F+G+ P+
Sbjct: 56 -LNPEWNKVFTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPL 98
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
cardiomyopathy, membrane fusion, dystrophin, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 62.8 bits (153), Expect = 2e-13
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 59 KVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT 118
+ + V +A ++ ++ P V V K TK V + NP WNE EF
Sbjct: 8 MLRVIVESASNIPKTKFGKPDPIVSVIFKD------EKKKTKKVDNE-LNPVWNEILEFD 60
Query: 119 VHNPEMAL---LRFVCQDEDMFGDSNFIGQATYPV 150
+ + L + +D + G + IG AT +
Sbjct: 61 LRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVAL 95
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane
associate, lipid binding PROT; 1.96A {Homo sapiens} PDB:
2jqz_A
Length = 132
Score = 58.9 bits (143), Expect = 4e-12
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 11/101 (10%)
Query: 54 GVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWN 112
G +K+ L VL A++L + PF ++ V G +G +T TV + +P WN
Sbjct: 1 GSEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDG----SGQCHSTDTVKNT-LDPKWN 55
Query: 113 ESCEFTVHNPEMALLRFVCQDEDMFG---DSNFIGQATYPV 150
+ + V + + + + F+G
Sbjct: 56 QHYDLYVGKTDS--ITISVWNHKKIHKKQGAGFLGCVRLLS 94
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 59.5 bits (144), Expect = 5e-12
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 10/93 (10%)
Query: 59 KVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEF 117
++ + V++A+ P+VEV V G T+ ++ +P W +
Sbjct: 37 QLQITVISAKLKENKKNWFGPSPYVEVTVDGQ------SKKTEKCNNT-NSPKWKQPLTV 89
Query: 118 TVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
V L F +G A +
Sbjct: 90 IVTPVSK--LHFRVWSHQTLKSDVLLGTAALDI 120
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 57.1 bits (138), Expect = 2e-11
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 20/104 (19%)
Query: 59 KVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEF 117
K+ + V+ A+ L + +S P+V V+ +G K TKT+ N NP W E+ F
Sbjct: 18 KISITVVCAQGLQAKDKTGSSDPYVTVQ-VGKT-----KKRTKTIYGN-LNPVWEENFHF 70
Query: 118 TVHNPEMALLRFVCQDED-----------MFGDSNFIGQATYPV 150
HN ++ DED +F+GQ V
Sbjct: 71 ECHNSS-DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEV 113
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 57.3 bits (138), Expect = 3e-11
Identities = 22/109 (20%), Positives = 32/109 (29%), Gaps = 15/109 (13%)
Query: 49 PTSLVGVTRVKVL----LRV--LAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKT 101
G RV++ L+ + RH P++ V V D T T
Sbjct: 24 TMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV-----DQVRVGQTST 78
Query: 102 VSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
PT+NE V + L E G +F+ T
Sbjct: 79 KQKT-NKPTYNEEFCANVTDGGH--LELAVFHETPLGYDHFVANCTLQF 124
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 56.8 bits (137), Expect = 3e-11
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 16/105 (15%)
Query: 54 GVTRVKVL----LRV--LAARHLTRSGRCTTS--PFVEVEVLGADYDTGLKLTTKTVSDN 105
G+ ++K+ L+ + R T P++ + V D T T
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV-----DDSRIGQTATK-QK 59
Query: 106 GFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
+P W++ V N + + G +F+ T
Sbjct: 60 TNSPAWHDEFVTDVCNGRK--IELAVFHDAPIGYDDFVANCTIQF 102
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 54.7 bits (132), Expect = 2e-10
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 59 KVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEF 117
K+ + V A++L S P+V+++ L D K TKT+ NP WNES F
Sbjct: 17 KLHVTVRDAKNLIPMDPNGLSDPYVKLK-LIPDPKNESKQKTKTIRST-LNPQWNESFTF 74
Query: 118 TV-HNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
+ + + L D D ++F+G ++ V
Sbjct: 75 KLKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGV 108
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 54.7 bits (132), Expect = 2e-10
Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 18/124 (14%)
Query: 41 SESYDPYDPTSLVGVTRVKVLLR-----------VLAARHL-TRSGRCTTSPFVEVEVLG 88
+ ++D + + VG TR+++ L+ ++ +L + + V VL
Sbjct: 16 AAAFDSDESEA-VGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLP 74
Query: 89 ADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMAL--LRF-VCQDEDMFGDSNFIGQ 145
T T+ + + +NE ++ P + LR VC D +G
Sbjct: 75 CSESTTCLFRTRPLDAS-DTLVFNEVFWVSMSYPALHQKTLRVDVC-TTDRSHLEECLGG 132
Query: 146 ATYP 149
A
Sbjct: 133 AQIS 136
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 56.9 bits (136), Expect = 2e-10
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 43 SYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRC----TTSPFVEVEVLGADYDTGLKLT 98
DPY + K + VL A +T+ T P+VE+ + +
Sbjct: 3 FIDPYQHIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT---PDSRKR 59
Query: 99 TKTVSDNGFNPTWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNR 154
T+ +++ NP WNE+ EF + + +L D + D +G AT+ V + +
Sbjct: 60 TRHFNND-INPVWNETFEFILDPNQENVLEITLMDANYVMDE-TLGTATFTVSSMK 113
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 56.4 bits (136), Expect = 3e-10
Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 21/131 (16%)
Query: 28 GGCGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHL-TRSGRCTTSPFVEVEV 86
CG + F+ Y ++++R+L A L + + P+V++ +
Sbjct: 4 APCGRIS-----FALRYLY---------GSDQLVVRILQALDLPAKDSNGFSDPYVKIYL 49
Query: 87 LGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMAL--LRFVCQDEDMFGDSNFIG 144
L D K TK NP +NE+ +F+V E+A L F D D F + IG
Sbjct: 50 L---PDRKKKFQTKVHRKT-LNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIG 105
Query: 145 QATYPVYTNRF 155
Q
Sbjct: 106 QVVLDNLLELA 116
Score = 48.3 bits (115), Expect = 2e-07
Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 14/110 (12%)
Query: 39 MFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKL 97
FS Y P T + + ++ A +L S P+V+ ++ + K
Sbjct: 142 NFSLCYLP---------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLIS-EGRRLKKR 191
Query: 98 TTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQDEDMFGDSNFIGQ 145
T + NPT+NE+ F V + L D D G + IG
Sbjct: 192 KTSIKKNT-LNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGV 240
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 54.8 bits (132), Expect = 3e-10
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 64 VLAARHLT--RSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN 121
V+ AR LT + T +P+V+V +L + K T+ +P + +S F
Sbjct: 36 VIRARSLTQKPGSKSTPAPYVKVYLL-ENGACIAKKKTRIARKT-LDPLYQQSLVFDESP 93
Query: 122 PEMALLRFVCQDEDMFGDSNFIGQATYPV 150
L V D F+G A +
Sbjct: 94 QGKVLQVIVWGDYGRMDHKCFMGVAQILL 122
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 53.6 bits (129), Expect = 4e-10
Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 7/113 (6%)
Query: 40 FSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTT 99
FS YD V V + L + +R ++P+V++ +L D T
Sbjct: 17 FSTQYDLLHNHLTVRVIEARDL-PPPISHDGSRQDMAHSNPYVKICLLP---DQKNSKQT 72
Query: 100 KTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQATYPV 150
P + E F + E L D D F IG+ + P+
Sbjct: 73 GVKRKT-QKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPL 124
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 53.2 bits (128), Expect = 7e-10
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 59 KVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEF 117
+++ V A++L S P+V+++++ D + K TKT+ + NP WNE+ F
Sbjct: 32 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIP-DPKSESKQKTKTIKCS-LNPEWNETFRF 89
Query: 118 TVHNPEM-ALLRFVCQDEDMFGDSNFIGQATYPV 150
+ + L D D+ ++F+G ++ +
Sbjct: 90 QLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGI 123
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 54.8 bits (132), Expect = 8e-10
Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 16/113 (14%)
Query: 40 FSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLT 98
+S YD ++L+ ++ A L TS P+V+V +L D K
Sbjct: 10 YSLDYDF---------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLL---PDKKKKFE 57
Query: 99 TKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQATYP 149
TK NP +NE F V E+A L D D F + IG+ P
Sbjct: 58 TKVHR-KTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVP 109
Score = 46.7 bits (111), Expect = 5e-07
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 14/114 (12%)
Query: 35 RPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDT 93
FS Y P T K+ + +L A++L + S P+V++ L +
Sbjct: 136 LGDICFSLRYVP---------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIH-LMQNGKR 185
Query: 94 GLKLTTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQDEDMFGDSNFIGQ 145
K T + NP +NES F V ++ + D D G ++ IG+
Sbjct: 186 LKKKKTTIKKNT-LNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGK 238
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 52.0 bits (125), Expect = 2e-09
Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 16/114 (14%)
Query: 40 FSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLT 98
+S YD ++L+ ++ A L TS P+V+V +L D K
Sbjct: 25 YSLDYDF---------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLL---PDKKKKFE 72
Query: 99 TKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQATYPV 150
TK NP +NE F V E+ L D D F + IG+ P+
Sbjct: 73 TKVHRKT-LNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM 125
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 52.0 bits (125), Expect = 3e-09
Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 16/114 (14%)
Query: 40 FSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLT 98
+S YD ++L+ ++ A L TS P+V+V +L D K
Sbjct: 33 YSLDYDF---------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLP---DKKKKFE 80
Query: 99 TKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQATYPV 150
TK NP +NE F V E+ L D D F + IG+ P+
Sbjct: 81 TKVHRKT-LNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM 133
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 50.0 bits (120), Expect = 9e-09
Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 9/90 (10%)
Query: 63 RVLAARHLTRSGRCTTSPFVEVEVLGADYDTG-LKLTTKTVSDNGFNPTWNESCEFTVHN 121
L A G C +V+ V TG ++ T + TW E +
Sbjct: 31 TRLEAVTSNHDGGC--DCYVQGSVA---NRTGSVEAQTALKKRQ-LHTTWEEGLVLPLAE 84
Query: 122 PEMA--LLRFVCQDEDMFGDSNFIGQATYP 149
E+ L + D F + G+
Sbjct: 85 EELPTATLTLTLRTCDRFSRHSVAGELRLG 114
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 49.3 bits (118), Expect = 2e-08
Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 15/115 (13%)
Query: 39 MFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLT 98
+ + R K+++ V A R+L + P+V + +L D +
Sbjct: 14 QLTIRHSS---------QRNKLIVVVHACRNLIAFSEDGSDPYVRMYLL-PDKRRSGRRK 63
Query: 99 TKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFG--DSNFIGQATYP 149
T NP +++S +F+V PE+ L ++ F D +G+
Sbjct: 64 THVSKKT-LNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVA 117
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 49.3 bits (118), Expect = 2e-08
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 15/115 (13%)
Query: 40 FSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLT 98
FS YD + ++ A+ L + P+V++ +L KL
Sbjct: 20 FSLLYDQ---------DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLL-PGASKSNKLR 69
Query: 99 TKTVSDNGFNPTWNESCEFTVHNPEMAL---LRFVCQDEDMFGDSNFIGQATYPV 150
TKT+ + NP WNE+ ++ E LR DED FG + FIG+ + +
Sbjct: 70 TKTLRNT-RNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL 123
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 49.3 bits (118), Expect = 2e-08
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 17/115 (14%)
Query: 40 FSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLT 98
FS Y+ + ++++ A+ L TS PFV++ +L D KL
Sbjct: 17 FSVGYNF---------QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLP---DKKHKLE 64
Query: 99 TKTVSDNGFNPTWNESCEFTVHNPEMAL---LRFVCQDEDMFGDSNFIGQATYPV 150
TK N NP WNE+ F E + L D D F ++ IG+ + P+
Sbjct: 65 TKVKRKN-LNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPL 118
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 48.5 bits (116), Expect = 4e-08
Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 18/116 (15%)
Query: 40 FSESYDPYDPTSLVGVTRVKVLLRVLAARHLT--RSGRCTTSPFVEVEVLGADYDTGLKL 97
FS Y+ R ++ + AR L T+ P++++ +L + K+
Sbjct: 13 FSLEYNF---------ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILP---EKKHKV 60
Query: 98 TTKTVSDNGFNPTWNESCEFTVHNPEMAL---LRFVCQDEDMFGDSNFIGQATYPV 150
T+ + +P ++E+ F L F D F + IG+ P+
Sbjct: 61 KTRVLRKT-LDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPL 115
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 46.6 bits (111), Expect = 2e-07
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 21/116 (18%)
Query: 47 YDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVL--------GADYDTGLKL 97
YD +L+ + +L AR+L S PFV+V +L + K
Sbjct: 15 YDLGNLI--------IHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKR 66
Query: 98 TTKTVSDNGFNPTWNESCEFTVHNPEMA---LLRFVCQDEDMFGDSNFIGQATYPV 150
TK V + NP WN++ + + E L D D F ++F+G+ +
Sbjct: 67 RTKYVQKS-LNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 47.0 bits (112), Expect = 2e-07
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 59 KVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT 118
+LL ++ + L T P+V++ ++ + T+TV D +P ++E F
Sbjct: 28 VLLLHIIEGKGLISKQPGTCDPYVKISLIP-EDSRLRHQKTQTVPDC-RDPAFHEHFFFP 85
Query: 119 VHNPEMA--LLRFVCQDEDMFGDSN-FIGQATYPV 150
V + LL V + + IG ++ V
Sbjct: 86 VQEEDDQKRLLVTVW-NRASQSRQSGLIGCMSFGV 119
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 45.9 bits (109), Expect = 5e-07
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 39 MFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKL 97
FS Y P T K+ + +L A++L + S P+V++ ++ +
Sbjct: 15 CFSLRYVP---------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLM---QNGKRLK 62
Query: 98 TTKT-VSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQ 145
KT + N NP +NES F V ++ + D D G ++ IG+
Sbjct: 63 KKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGK 113
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 45.4 bits (108), Expect = 6e-07
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 59 KVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFT 118
+ + V+ + L +P+V+ +L D K TK NPT+NE ++
Sbjct: 21 TLFIMVMHIKDLVTEDGADPNPYVKTYLL-PDTHKTSKRKTKISRKT-RNPTFNEMLVYS 78
Query: 119 VHNPEMAL---LRFVCQDEDMFGDSNFIGQATYPV 150
++ E L+ + ++ F+G T P+
Sbjct: 79 GYSKETLRQRELQLSVLSAESLRENFFLGGITLPL 113
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 45.7 bits (107), Expect = 2e-06
Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 8/88 (9%)
Query: 64 VLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEF-TVHNP 122
A HL T +++V G + T V +N NP W + +F V
Sbjct: 400 NFRAEHLWGDYTTATDAYLKVFF------GGQEFRTGVVWNN-NNPRWTDKMDFENVLLS 452
Query: 123 EMALLRFVCQDEDMFGDSNFIGQATYPV 150
LR D D D + +G
Sbjct: 453 TGGPLRVQVWDADYGWDDDLLGSCDRSP 480
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 43.9 bits (104), Expect = 2e-06
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 11/112 (9%)
Query: 40 FSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTT 99
FS Y+ + +V V LA + ++P+V+ +L D K T
Sbjct: 14 FSLKYEQQTQSLVVHVKEC----HQLAYADEAKK---RSNPYVKTYLL-PDKSRQGKRKT 65
Query: 100 KTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQATYP 149
D NP ++E+ + + +A L+F FG + F+G+A
Sbjct: 66 SIKRDT-VNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQ 116
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter
release, RIM, MUNC13 domains, exocytosis, metal-binding;
1.44A {Rattus norvegicus} SCOP: b.7.1.1
Length = 131
Score = 43.0 bits (101), Expect = 3e-06
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Query: 63 RVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNP 122
V A+ + + +V ++V +K TT V G P+W + F ++
Sbjct: 10 GVKKAKFDGAQEKF--NTYVTLKV------QNVKSTTIAV--RGSQPSWEQDFMFEINRL 59
Query: 123 EMALLRFVCQDEDMFGDSNFIGQATYPVYT 152
++ L V ++ + D +G P+ T
Sbjct: 60 DLGLTVEVW-NKGLIWD-TMVGTVWIPLRT 87
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 42.7 bits (101), Expect = 6e-06
Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 39 MFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKL 97
+ S Y T + + VL ARHL +S S P+V+V + +
Sbjct: 20 LVSLCYQS---------TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLY---HAKKRIS 67
Query: 98 TTKT-VSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQ 145
KT V N +NE F + + + F+ D + + IG+
Sbjct: 68 KKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGR 118
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 41.5 bits (98), Expect = 1e-05
Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 17/117 (14%)
Query: 40 FSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLT 98
+D ++++ +L A+ L P+V++ L D K
Sbjct: 9 IKLWFDK---------VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKN-KRR 58
Query: 99 TKTVSDNGFNPTWNESCEFTVHNPEMAL---LRFVCQDEDMF--GDSNFIGQATYPV 150
TKTV P WN++ ++ + L D+ +S F+G+ +
Sbjct: 59 TKTVKKT-LEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIEL 114
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 41.5 bits (98), Expect = 1e-05
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 14/110 (12%)
Query: 39 MFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKL 97
+ S Y+P + +++ ++ AR+L TS P+V+V ++ K
Sbjct: 6 LLSLCYNP---------SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLM-YKDKRVEKK 55
Query: 98 TTKTVSDNGFNPTWNESCEFTVHNPEM--ALLRFVCQDEDMFGDSNFIGQ 145
T T N NP +NES F + ++ + D+D ++ IG+
Sbjct: 56 KTVTKKRN-LNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGK 104
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 41.1 bits (97), Expect = 2e-05
Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 17/117 (14%)
Query: 40 FSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLT 98
+D ++++ +L A+ L P+V++ L D K
Sbjct: 12 IKLWFDK---------VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKN-KRR 61
Query: 99 TKTVSDNGFNPTWNESCEFTVHNPEMAL---LRFVCQDEDMF--GDSNFIGQATYPV 150
TKTV P WN++ ++ + L D+ +S F+G+ +
Sbjct: 62 TKTVKKT-LEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIEL 117
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 39.7 bits (93), Expect = 8e-05
Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 16/111 (14%)
Query: 39 MFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKL 97
+ S Y + +++ ++ HL S PFV++ + D G K
Sbjct: 27 LVSLMYST---------QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLK---PDMGKKA 74
Query: 98 TTKT-VSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQ 145
KT + NP +NE + + + ++A L D D+ +++IG
Sbjct: 75 KHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGG 125
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc
finger, synapto phorbol-ester binding; 1.78A {Rattus
norvegicus} SCOP: b.7.1.1
Length = 167
Score = 39.6 bits (92), Expect = 9e-05
Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 62 LRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN 121
+ V A+ + + +V ++V + + T++ G P+W + F ++
Sbjct: 18 VGVKKAKFDGAQEK--FNTYVTLKVQ--------NVESTTIAVRGSQPSWEQDFMFEINR 67
Query: 122 PEMALLRFVCQDEDMFGDSNFIGQATYPV 150
++ L V ++ + D +G P+
Sbjct: 68 LDLGLTVEV-WNKGLIWD-TMVGTVWIPL 94
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 36.5 bits (84), Expect = 0.002
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 66 AARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA 125
A ++P+ E+ + Y TT+T+ D NP WN +C+F + +
Sbjct: 396 ATELKACKPNGKSNPYCEISMGSQSY------TTRTIQDT-LNPKWNFNCQFFIKDLYQD 448
Query: 126 LLRFVCQDEDMFGDSNFIGQATYPVYTNR 154
+L D D F +F+G+ PV R
Sbjct: 449 VLCLTLFDRDQFSPDDFLGRTEIPVAKIR 477
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal
protein, nucleus, phosphoprotein, repressor, telomere;
HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Length = 168
Score = 26.6 bits (58), Expect = 2.9
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 8/85 (9%)
Query: 34 LRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEV--EVLGADY 91
+R F + YD DP ++ ++ L S T F++ EV+ DY
Sbjct: 3 IRSDFSNEDIYDNIDPDTISFPPKIATTDLFLPLFFHFGS----TRQFMDKLHEVISGDY 58
Query: 92 DTGL--KLTTKTVSDNGFNPTWNES 114
+ KL + G ++ S
Sbjct: 59 EPSQAEKLVQDLCDETGIRKNFSTS 83
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V
hearing, membrane, synapse, transmembrane, membrane
protein; 1.95A {Rattus norvegicus}
Length = 144
Score = 26.5 bits (58), Expect = 3.3
Identities = 6/58 (10%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Query: 94 GLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQATYP 149
G ++ + + ++E+ + V + +L + + IG
Sbjct: 47 GQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMV 104
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1;
transferase, ATP sulfurylase, APS kinase, PAPS; HET:
ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5
c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Length = 630
Score = 26.3 bits (58), Expect = 5.4
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 8/36 (22%)
Query: 21 HAKFRMNGGCGYLL--R-PAFMFSES-----YDPYD 48
H + RM G + + R PA M Y+P
Sbjct: 506 HCRARMVAGANFYIVGRDPAGMPHPETGKDLYEPSH 541
>1v0w_A Phospholipase D; hydrolase, substrate SOAK,
dibutyrylphosphatidylcholine, DIC4PC; 1.35A
{Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A
1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A*
2ze9_A*
Length = 506
Score = 25.8 bits (56), Expect = 8.7
Identities = 14/100 (14%), Positives = 21/100 (21%), Gaps = 11/100 (11%)
Query: 36 PAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGL 95
S R+ + A + F
Sbjct: 378 VGSGGYSQIKSLSEISDTLRNRLANITGGQQAAKTAMCSNLQLATFRSSPNGKWADGHPY 437
Query: 96 KLTTKTV----------SDNGFNPTWNESCEFTVHNPEMA 125
K V S N P+W + + V +PE A
Sbjct: 438 AQHHKLVSVDSSTFYIGSKN-LYPSWLQDFGYIVESPEAA 476
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich,
phosphotyrosine binding, TCR, T-cell, diacylglycerol,
phorbol ester, structural genomics; NMR {Homo sapiens}
Length = 138
Score = 25.0 bits (54), Expect = 8.7
Identities = 10/93 (10%), Positives = 31/93 (33%), Gaps = 12/93 (12%)
Query: 62 LRVLAARH----LTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEF 117
LR+ + +P+ V V +Y P W+ + +
Sbjct: 12 LRIGLSNFDCGSCQSCQGEAVNPYCAVLV--KEYVESENGQMYIQKKPTMYPPWDSTFDA 69
Query: 118 TVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
++ + ++ + + +++ + I + T +
Sbjct: 70 HINKGRV--MQIIVKGKNV----DLISETTVEL 96
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.421
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,433,858
Number of extensions: 133411
Number of successful extensions: 248
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 51
Length of query: 156
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,300,587
Effective search space: 301041090
Effective search space used: 301041090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.2 bits)