RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12820
(156 letters)
>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1
(PLC-D1), C-terminal domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 131
Score = 73.6 bits (180), Expect = 3e-18
Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 58 VKVLLRVLAARHLTRSGRCTTS---PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNES 114
++ +R+++ + L + + S P V VE+ G DTG T +++NGFNP W+
Sbjct: 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTG-SRQTAVITNNGFNPRWDME 62
Query: 115 CEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPVYTNR 154
EF V P++AL+RF+ +D D ++FIGQ+T P + +
Sbjct: 63 FEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLK 102
>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 122
Score = 66.9 bits (163), Expect = 1e-15
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 62 LRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKT-VSDNGFNPTWNESC--EFT 118
+ V++ + L+ + +VEVE+ G D + TK S N NP W E
Sbjct: 5 ITVISGQFLSER---SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEK 61
Query: 119 VHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
+ PE+A LR +E + F+G P+
Sbjct: 62 ILMPELASLRVAVMEE----GNKFLGHRIIPI 89
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 138
Score = 57.4 bits (138), Expect = 6e-12
Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 14/114 (12%)
Query: 39 MFSESYDPYDPTSLVGVTRVKVLLRVLAARHL-TRSGRCTTSPFVEVEVLGADYDTGLKL 97
+ S Y T + + VL ARHL + P+V+V + K
Sbjct: 5 LVSLCYQS---------TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYH-AKKRISKK 54
Query: 98 TTKTVSDNGFNPTWNESCEFTVHNPEMAL--LRFVCQDEDMFGDSNFIGQATYP 149
T N +NE F + + + F+ D + + IG+
Sbjct: 55 KTHVKKCT-PNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLG 107
>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 132
Score = 55.9 bits (134), Expect = 2e-11
Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 59 KVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEF 117
+++ V A++L S P+V+++++ + TKT+ + NP WNE+ F
Sbjct: 16 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQ-KTKTIKCS-LNPEWNETFRF 73
Query: 118 TVHNPEM-ALLRFVCQDEDMFGDSNFIGQATYPV 150
+ + L D D+ ++F+G ++ +
Sbjct: 74 QLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGI 107
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 137
Score = 54.1 bits (129), Expect = 1e-10
Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 14/117 (11%)
Query: 39 MFSESYDPYDPTSLVGVTRVKVLLRVLAARHL-TRSGRCTTSPFVEVEVLGADYDTGLKL 97
+ S Y + +++ ++ HL + PFV++ + D K
Sbjct: 5 LVSLMYST---------QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKP-DMGKKAKH 54
Query: 98 TTKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQATYPVYT 152
T+ NP +NE + + + ++A L D D+ +++IG +
Sbjct: 55 KTQIKKKT-LNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA 110
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis
protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 53.2 bits (127), Expect = 2e-10
Identities = 15/118 (12%), Positives = 36/118 (30%), Gaps = 17/118 (14%)
Query: 39 MFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKL 97
+D ++++ +L A+ L P+V++ L D
Sbjct: 4 SIKLWFDK---------VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDK--NK 52
Query: 98 TTKTVSDNGFNPTWNESCEFTVHNPEM---ALLRFVCQDEDMFGDSN--FIGQATYPV 150
P WN++ ++ + +L D+ + F+G+ +
Sbjct: 53 RRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIEL 110
>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 143
Score = 53.2 bits (127), Expect = 2e-10
Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 16/115 (13%)
Query: 39 MFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKL 97
+S YD ++L+ ++ A L TS P+V+V +L D K
Sbjct: 24 QYSLDYDF---------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLP---DKKKKF 71
Query: 98 TTKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQATYPV 150
TK NP +NE F V E+ L D D F + IG+ P+
Sbjct: 72 ETKVH-RKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM 125
>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 49.7 bits (118), Expect = 4e-09
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 59 KVLLRVLAARHLTRSGR----CTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNES 114
K + VL A +T+ T P+VE+ + +N NP WNE+
Sbjct: 4 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSR----KRTRHFNNDINPVWNET 59
Query: 115 CEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
EF + + +L D + D +G AT+ V
Sbjct: 60 FEFILDPNQENVLEITLMDANYVMD-ETLGTATFTV 94
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 157
Score = 49.8 bits (118), Expect = 6e-09
Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 47 YDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNG 106
Y PT+ G V +L A + P+V++ ++ K TT + N
Sbjct: 20 YVPTA--GKLTVVILE---AKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTT--IKKNT 72
Query: 107 FNPTWNESCEFTVHNPE--MALLRFVCQDEDMFGDSNFIGQATYPVYT 152
NP +NES F V + + D D G ++ IG+ +
Sbjct: 73 LNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS 120
>d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 327
Score = 49.6 bits (118), Expect = 2e-08
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 15 KAMQVNHAKFRMNGGCGYLLRPAFMFSE--SYDPYDPT 50
M V F+ NGGCGY+L+PAF+ +++ T
Sbjct: 286 PEMDVYLGCFQDNGGCGYVLKPAFLRDPNTTFNSRALT 323
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 47.4 bits (112), Expect = 3e-08
Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 18/117 (15%)
Query: 39 MFSESYDPYDPTSLVGVTRVKVLLRVLAARHL--TRSGRCTTSPFVEVEVLGADYDTGLK 96
FS Y+ R ++ + AR L T+ P++++ +L + K
Sbjct: 12 FFSLEYNF---------ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILP---EKKHK 59
Query: 97 LTTKTVSDNGFNPTWNESCEFTVHNPEM---ALLRFVCQDEDMFGDSNFIGQATYPV 150
+ T+ + +P ++E+ F L F D F + IG+ P+
Sbjct: 60 VKTRVL-RKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPL 115
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 136
Score = 47.4 bits (112), Expect = 4e-08
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 10/101 (9%)
Query: 50 TSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNP 109
+ G V ++ +A+ L + + G P
Sbjct: 6 SGPHGTLEVVLV----SAKGLEDADFLNNMDPYVQLTCRTQ-----DQKSNVAEGMGTTP 56
Query: 110 TWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
WNE+ FTV L+ D+D+ + + +G+AT P+
Sbjct: 57 EWNETFIFTVSEGTTE-LKAKIFDKDVGTEDDAVGEATIPL 96
>d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 349
Score = 47.8 bits (113), Expect = 9e-08
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 15 KAMQVNHAKFRMNGGCGYLLRPAFM 39
MQ N A F NG GYLL+ FM
Sbjct: 322 LPMQQNMAVFEFNGQSGYLLKHEFM 346
>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 130
Score = 44.9 bits (105), Expect = 3e-07
Identities = 30/122 (24%), Positives = 43/122 (35%), Gaps = 19/122 (15%)
Query: 30 CGYLLRPAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGA 89
CG + F+ Y ++++R+L A L S L
Sbjct: 4 CGRI-----SFALRYLY---------GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLL- 48
Query: 90 DYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNPEMA--LLRFVCQDEDMFGDSNFIGQAT 147
D K TK NP +NE+ +F+V E+A L F D D F + IGQ
Sbjct: 49 -PDRKKKFQTKVHRKT-LNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVV 106
Query: 148 YP 149
Sbjct: 107 LD 108
>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens)
[TaxId: 9606]}
Length = 138
Score = 43.7 bits (102), Expect = 7e-07
Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 16/117 (13%)
Query: 36 PAFMFSESYDPYDPTSLVGVTRVKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGL 95
P + YD + ++ + L A G C +V+ V
Sbjct: 13 PKLHYCLDYDC---------QKAELFVTRLEAVTSNHDGGC--DCYVQGSVANRTGSV-- 59
Query: 96 KLTTKTVSDNGFNPTWNESCEFTVHNPEMAL--LRFVCQDEDMFGDSNFIGQATYPV 150
+ T + TW E + E+ L + D F + G+ +
Sbjct: 60 EAQTALK-KRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGL 115
>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 128
Score = 41.7 bits (97), Expect = 4e-06
Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 12/94 (12%)
Query: 63 RVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNP 122
V A+ + + +V ++V + + T++ G P+W + F ++
Sbjct: 7 GVKKAKFDGAQEKF--NTYVTLKVQ--------NVKSTTIAVRGSQPSWEQDFMFEINRL 56
Query: 123 EMALLRFVCQDEDMFGDSNFIGQATYPVYTNRFP 156
++ L ++ + D +G P+ T R
Sbjct: 57 DLGLT-VEVWNKGLIWD-TMVGTVWIPLRTIRQS 88
>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 41.3 bits (96), Expect = 6e-06
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 12/101 (11%)
Query: 51 SLVGVTRVKVLLRVLAARHL-TRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNP 109
SL +++++ V++A+ + SP+VEV V G +N +P
Sbjct: 1 SLTMKSQLQI--TVISAKLKENKKNWFGPSPYVEVTVDGQSK-------KTEKCNNTNSP 51
Query: 110 TWNESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
W + V R +G A +
Sbjct: 52 KWKQPLTVIVTPVSKLHFR--VWSHQTLKSDVLLGTAALDI 90
>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane
domain-containing protein 2, MCTP2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 37.8 bits (87), Expect = 1e-04
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 13/99 (13%)
Query: 53 VGVTRVKVLLRVLAARHLTRSGRCTTS-PFVEVEVLGADYDTGLKLTTKTVSDNGFNPTW 111
VG+ +V +VL A L + S PF +E+ NP W
Sbjct: 5 VGILQV----KVLKAADLLAADFSGKSDPFCLLELGNDRLQ-------THTVYKNLNPEW 53
Query: 112 NESCEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
N+ F + + +L DED +F+G+ P+
Sbjct: 54 NKVFTFPIKDI-HDVLEVTVFDEDGDKPPDFLGKVAIPL 91
>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 123
Score = 35.5 bits (81), Expect = 6e-04
Identities = 10/85 (11%), Positives = 24/85 (28%), Gaps = 3/85 (3%)
Query: 58 VKVLLRVLAARHLTRSGRCTTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEF 117
+++ L + PF V++ T T P W + +
Sbjct: 5 LRISFNSYELGSLQAEDD-ASQPFCAVKMKE-ALTTDRGKTLVQKKPT-MYPEWKSTFDA 61
Query: 118 TVHNPEMALLRFVCQDEDMFGDSNF 142
++ + + + ED +
Sbjct: 62 HIYEGRVIQIVLMRAAEDPMSEVTV 86
>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 136
Score = 35.2 bits (80), Expect = 0.001
Identities = 12/96 (12%), Positives = 23/96 (23%), Gaps = 10/96 (10%)
Query: 62 LRVLAARHLTRSGRCTTSPFVEVEVLG-------ADYDTGLKLTTKTVSDNGFNPTWNES 114
+++ A L + + D T T +P W++
Sbjct: 10 IKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATK-QKTNSPAWHDE 68
Query: 115 CEFTVHNPEMALLRFVCQDEDMFGDSNFIGQATYPV 150
V N + G +F+ T
Sbjct: 69 FVTDVCNGRKI--ELAVFHDAPIGYDDFVANCTIQF 102
>d1uy4a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium
[TaxId: 1510]}
Length = 132
Score = 25.0 bits (54), Expect = 2.8
Identities = 6/46 (13%), Positives = 13/46 (28%)
Query: 77 TTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHNP 122
F +E + L +NG + E+ ++
Sbjct: 4 RRDAFSIIEAEEYNSTNSSTLQVIGTPNNGRGIGYIENGNTVTYSN 49
>d2nn6h3 d.51.1.1 (H:168-293) Ribosomal RNA-processing protein 4,
RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 25.1 bits (55), Expect = 3.0
Identities = 4/32 (12%), Positives = 13/32 (40%)
Query: 40 FSESYDPYDPTSLVGVTRVKVLLRVLAARHLT 71
F + +P ++R++ + L + +
Sbjct: 52 FIANLEPVSLADREVISRLRNCIISLVTQRMM 83
>d1od3a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium
[TaxId: 1510]}
Length = 132
Score = 24.7 bits (53), Expect = 4.0
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 77 TTSPFVEVEVLGADYDTGLKLTTKTVSDNGFNPTWNESCEFTVHN 121
T S F ++ D G L ++ G + E+ T +
Sbjct: 4 TRSAFSNIQAEDYDSSYGPNLQIFSLPGGGSAIGYIENGYSTTYK 48
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 623
Score = 24.9 bits (53), Expect = 5.7
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 53 VGVTRVKVLLRVLAARHLTRSGR---CTTSPFVE 83
VG+TR + L + +A+ T G S F+
Sbjct: 578 VGITRAEEELVLTSAQMRTLFGNIQMDPPSRFLN 611
>d1uaaa2 c.37.1.19 (A:308-640) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 333
Score = 24.4 bits (51), Expect = 7.0
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 53 VGVTRVKVLLRVLAARHLTRSG---RCTTSPFVE 83
VG+TR + L + + G R S F+
Sbjct: 291 VGITRAQKELTFTLCKERRQYGELVRPEPSRFLL 324
>d1pjra2 c.37.1.19 (A:319-651) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 333
Score = 24.3 bits (51), Expect = 7.8
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 53 VGVTRVKVLLRVLAARHLTRSGR---CTTSPFVE 83
VG+TR + L + +A+ T G S F+
Sbjct: 288 VGITRAEEELVLTSAQMRTLFGNIQMDPPSRFLN 321
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.421
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 596,973
Number of extensions: 25377
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 29
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.4 bits)