Query psy12822
Match_columns 82
No_of_seqs 115 out of 513
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 20:44:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zkm_X 1-phosphatidylinositol- 100.0 2.2E-40 7.5E-45 271.9 2.6 77 2-78 592-670 (799)
2 1djx_A PLC-D1, phosphoinositid 100.0 1.1E-39 3.7E-44 261.5 2.8 77 2-78 411-489 (624)
3 3ohm_B 1-phosphatidylinositol- 100.0 1.1E-39 3.9E-44 271.0 2.5 77 2-78 639-717 (885)
4 3qr0_A Phospholipase C-beta (P 100.0 1.3E-39 4.6E-44 268.6 2.9 78 2-79 564-643 (816)
5 2r25_B Osmosensing histidine p 28.0 22 0.00075 20.9 1.1 13 54-66 101-113 (133)
6 1dbw_A Transcriptional regulat 26.9 24 0.00082 20.2 1.1 12 55-66 96-107 (126)
7 3aqy_A Beta-1,3-glucan-binding 26.8 25 0.00085 22.2 1.3 27 6-40 10-36 (106)
8 2kha_A Beta-1,3-glucan-binding 26.8 19 0.00066 23.6 0.8 47 6-65 19-65 (130)
9 3f6p_A Transcriptional regulat 26.5 23 0.00078 20.3 1.0 13 54-66 93-105 (120)
10 3h1g_A Chemotaxis protein CHEY 26.3 26 0.00089 20.3 1.2 13 54-66 101-113 (129)
11 2a9o_A Response regulator; ess 26.3 25 0.00086 19.7 1.1 12 55-66 93-104 (120)
12 2pl1_A Transcriptional regulat 26.2 25 0.00086 19.8 1.1 13 54-66 92-104 (121)
13 2lpm_A Two-component response 26.1 17 0.00057 22.8 0.4 11 56-66 98-108 (123)
14 1xhf_A DYE resistance, aerobic 25.9 26 0.00087 19.9 1.1 12 55-66 95-106 (123)
15 1dz3_A Stage 0 sporulation pro 25.9 28 0.00095 20.0 1.3 12 55-66 98-109 (130)
16 1dcf_A ETR1 protein; beta-alph 25.3 27 0.00092 20.3 1.2 13 54-66 103-115 (136)
17 1zgz_A Torcad operon transcrip 25.0 27 0.00093 19.7 1.1 12 55-66 94-105 (122)
18 3gl9_A Response regulator; bet 24.7 28 0.00095 20.1 1.1 13 54-66 96-108 (122)
19 3to5_A CHEY homolog; alpha(5)b 24.0 29 0.00098 21.8 1.2 13 54-66 107-119 (134)
20 3crn_A Response regulator rece 23.6 30 0.001 20.1 1.1 12 55-66 96-107 (132)
21 3a10_A Response regulator; pho 23.6 27 0.00091 19.5 0.9 12 55-66 92-103 (116)
22 1tmy_A CHEY protein, TMY; chem 23.6 31 0.0011 19.4 1.2 13 54-66 95-107 (120)
23 1zh2_A KDP operon transcriptio 23.5 31 0.001 19.3 1.1 12 55-66 93-104 (121)
24 1mvo_A PHOP response regulator 22.9 32 0.0011 19.8 1.2 13 54-66 95-107 (136)
25 3t6k_A Response regulator rece 22.4 33 0.0011 20.2 1.2 12 55-66 99-110 (136)
26 3b2n_A Uncharacterized protein 22.3 33 0.0011 19.9 1.2 12 55-66 98-109 (133)
27 2qzj_A Two-component response 22.1 34 0.0012 20.1 1.2 12 55-66 96-107 (136)
28 1srr_A SPO0F, sporulation resp 22.0 33 0.0011 19.5 1.1 12 55-66 96-107 (124)
29 1jbe_A Chemotaxis protein CHEY 21.7 35 0.0012 19.4 1.1 12 55-66 100-111 (128)
30 1p6q_A CHEY2; chemotaxis, sign 21.6 30 0.001 19.7 0.9 12 55-66 102-113 (129)
31 2jba_A Phosphate regulon trans 21.4 32 0.0011 19.5 0.9 13 54-66 96-108 (127)
32 1mb3_A Cell division response 21.3 32 0.0011 19.4 0.9 12 55-66 96-107 (124)
33 3eod_A Protein HNR; response r 21.0 38 0.0013 19.4 1.2 12 54-65 99-110 (130)
34 3cu5_A Two component transcrip 21.0 33 0.0011 20.3 1.0 13 54-66 97-109 (141)
35 3m6m_D Sensory/regulatory prot 20.4 37 0.0013 20.1 1.1 14 54-67 110-123 (143)
36 2oyy_A Hexameric cytochrome; a 20.3 5.7 0.00019 24.3 -2.6 11 30-40 56-66 (76)
No 1
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=100.00 E-value=2.2e-40 Score=271.94 Aligned_cols=77 Identities=52% Similarity=0.884 Sum_probs=73.6
Q ss_pred CccceeEEecCCcccCCCCCCcccccccccceeeeccCCCCccceecceeeeecCCeeeEecCCccccC--CCCCCCCC
Q psy12822 2 KLVQFSRVYPKGQRIDSSNYNPVPLWNVGSQMLALNFQTPDKAMQVNHAKFRMNGGCGYLLRPAFMFSE--SYDPYDPE 78 (82)
Q Consensus 2 ~r~~l~RvyP~g~R~~SsN~~P~~~W~~G~QmvAlN~Qt~d~~m~ln~~~F~~NG~cGYVlKP~~lr~~--~f~p~~~~ 78 (82)
||+||+||||+|+|||||||||+.+|++|||||||||||.|++||||+|||+.||+|||||||++||+. .|+|+.+.
T Consensus 592 n~~~l~RvYP~g~R~~SSN~~P~~~W~~G~QmVAlN~Qt~d~~m~ln~g~F~~nG~cGYVlKP~~lr~~~~~f~p~~~~ 670 (799)
T 2zkm_X 592 NKRQMSRIYPKGTRMDSSNYMPQMFWNAGCQMVALNFQTMDLPMQQNMAVFEFNGQSGYLLKHEFMRRPDKQFNPFSVD 670 (799)
T ss_dssp HHHSEEEEECCTTCTTCCCCCSHHHHHTTCSEECBCTTCCSHHHHHHHHHTTTGGGCSEEECCGGGTCTTSCCCTTSCC
T ss_pred hhhcceeeccCCCcCCCCCCCcHHHHhccceEeeeccccCchHHHHHHhhhhccCCCCceECCHHHhCCCccCCCcccc
Confidence 689999999999999999999999999999999999999999999999999999999999999999974 79998654
No 2
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=100.00 E-value=1.1e-39 Score=261.50 Aligned_cols=77 Identities=48% Similarity=0.901 Sum_probs=73.7
Q ss_pred CccceeEEecCCcccCCCCCCcccccccccceeeeccCCCCccceecceeeeecCCeeeEecCCccccC--CCCCCCCC
Q psy12822 2 KLVQFSRVYPKGQRIDSSNYNPVPLWNVGSQMLALNFQTPDKAMQVNHAKFRMNGGCGYLLRPAFMFSE--SYDPYDPE 78 (82)
Q Consensus 2 ~r~~l~RvyP~g~R~~SsN~~P~~~W~~G~QmvAlN~Qt~d~~m~ln~~~F~~NG~cGYVlKP~~lr~~--~f~p~~~~ 78 (82)
||+||+||||+|+|||||||||+.+|++|||||||||||.|++||||+|||+.||+|||||||++||+. .|+|....
T Consensus 411 n~~~l~RvYP~g~R~~SSN~~P~~~W~~G~QmvAlN~Qt~d~~m~ln~g~F~~ng~~GYvlKP~~lr~~~~~f~p~~~~ 489 (624)
T 1djx_A 411 NVSCLSRIYPAGWRTDSSNYSPVEMWNGGCQIVALNFQTPGPEMDVYLGCFQDNGGCGYVLKPAFLRDPNTTFNSRALT 489 (624)
T ss_dssp HHHSCEEEECCTTCTTCCCCCSHHHHTTTCCEEEECTTCCSHHHHHHHHHHHSGGGCSEEECCGGGGCTTCCCCTTSCC
T ss_pred hhhcceeeccCCccCCCCCCCchHHhhccceeeeecccCCchHHhHHHHHhhcCCCCccEECCHHHcCCCCCcCccccc
Confidence 689999999999999999999999999999999999999999999999999999999999999999986 68987754
No 3
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-39 Score=270.98 Aligned_cols=77 Identities=56% Similarity=0.958 Sum_probs=73.8
Q ss_pred CccceeEEecCCcccCCCCCCcccccccccceeeeccCCCCccceecceeeeecCCeeeEecCCcccc--CCCCCCCCC
Q psy12822 2 KLVQFSRVYPKGQRIDSSNYNPVPLWNVGSQMLALNFQTPDKAMQVNHAKFRMNGGCGYLLRPAFMFS--ESYDPYDPE 78 (82)
Q Consensus 2 ~r~~l~RvyP~g~R~~SsN~~P~~~W~~G~QmvAlN~Qt~d~~m~ln~~~F~~NG~cGYVlKP~~lr~--~~f~p~~~~ 78 (82)
||+||+||||+|+|+|||||||++||++|||||||||||.|++||||+|||+.||+|||||||++||+ ..|+|+++.
T Consensus 639 n~~~l~RvYP~g~RidSSNy~P~~~W~~G~QmVALN~QT~d~~m~lN~g~F~~nG~cGYVLKP~~lr~~~~~f~p~~~~ 717 (885)
T 3ohm_B 639 NKQQLSRIYPKGTRVDSSNYMPQLFWNVGCQLVALNFQTLDVAMQLNAGVFEYNGRSGYLLKPEFMRRPDKSFDPFTEV 717 (885)
T ss_dssp HHHSCEEEECCTTCTTCCCCCTHHHHTTTCSEECBCTTCCSHHHHHHHHHHTTGGGCSEEECCGGGTCTTCCCCTTCSS
T ss_pred hhccceeeccCccccCCCCCCchhhcccCceeeeecCCCCCcccchhhhhhccCCceeeeecCHHHcCCCcCcCCCcCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999997 579998754
No 4
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=100.00 E-value=1.3e-39 Score=268.63 Aligned_cols=78 Identities=50% Similarity=0.871 Sum_probs=74.2
Q ss_pred CccceeEEecCCcccCCCCCCcccccccccceeeeccCCCCccceecceeeeecCCeeeEecCCcccc--CCCCCCCCCC
Q psy12822 2 KLVQFSRVYPKGQRIDSSNYNPVPLWNVGSQMLALNFQTPDKAMQVNHAKFRMNGGCGYLLRPAFMFS--ESYDPYDPEN 79 (82)
Q Consensus 2 ~r~~l~RvyP~g~R~~SsN~~P~~~W~~G~QmvAlN~Qt~d~~m~ln~~~F~~NG~cGYVlKP~~lr~--~~f~p~~~~~ 79 (82)
||+||+||||+|+|+|||||||+++|++|||||||||||.|++||||+|||+.||+|||||||++||+ ..|+|+.+.+
T Consensus 564 n~~~l~RvYP~g~RidSSNy~P~~~W~~G~QmVALN~QT~d~~m~LN~g~F~~nG~cGYVLKP~~lr~~~~~f~p~~~~~ 643 (816)
T 3qr0_A 564 NKKQITRIYPKGTRVDSSNYVPQIYWNAGCQLVALNFQCFDIAMCVNLGVFEYNGCSGYLLKPEFMRKLDKRFDPFTEST 643 (816)
T ss_dssp TTTSCEEEECCTTCTTCCCCCTHHHHTTTCSEECBCTTCCSHHHHHHHHHTTTTTTCSEEECCHHHHCTTCCCCTTCCSC
T ss_pred hhcccceeCCCccccCCCCCCchhhcccCceEEeecCcCCChhhhhhhhhhccCCceeeeecChHhcCCCcccCCCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999997 5799987543
No 5
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=27.98 E-value=22 Score=20.88 Aligned_cols=13 Identities=31% Similarity=0.514 Sum_probs=10.3
Q ss_pred ecCCeeeEecCCc
Q psy12822 54 MNGGCGYLLRPAF 66 (82)
Q Consensus 54 ~NG~cGYVlKP~~ 66 (82)
..|-.||+.||..
T Consensus 101 ~~ga~~~l~KP~~ 113 (133)
T 2r25_B 101 ESGMNGFLSKPIK 113 (133)
T ss_dssp HTTCSEEEESSCC
T ss_pred HcCCCEEEeCCCC
Confidence 3477899999964
No 6
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=26.88 E-value=24 Score=20.23 Aligned_cols=12 Identities=17% Similarity=0.448 Sum_probs=9.9
Q ss_pred cCCeeeEecCCc
Q psy12822 55 NGGCGYLLRPAF 66 (82)
Q Consensus 55 NG~cGYVlKP~~ 66 (82)
.|-.||+.||..
T Consensus 96 ~ga~~~l~Kp~~ 107 (126)
T 1dbw_A 96 AGAVDFIEKPFE 107 (126)
T ss_dssp TTCSEEEESSCC
T ss_pred hCHHHheeCCCC
Confidence 477899999964
No 7
>3aqy_A Beta-1,3-glucan-binding protein; beta-sandwich, immune receptor, sugar bindi protein; 1.58A {Plodia interpunctella} PDB: 3aqz_A* 3aqx_A* 2rqe_A
Probab=26.77 E-value=25 Score=22.17 Aligned_cols=27 Identities=30% Similarity=0.691 Sum_probs=20.1
Q ss_pred eeEEecCCcccCCCCCCcccccccccceeeeccCC
Q psy12822 6 FSRVYPKGQRIDSSNYNPVPLWNVGSQMLALNFQT 40 (82)
Q Consensus 6 l~RvyP~g~R~~SsN~~P~~~W~~G~QmvAlN~Qt 40 (82)
+.-.+|+|.|++ ++ .-|.+++|.+.+-
T Consensus 10 ve~l~PkG~~vS------ip--~pGi~lfafh~~i 36 (106)
T 3aqy_A 10 LEAIYPKGLRVS------IP--DDGFSLFAFHGKL 36 (106)
T ss_dssp EEEESSSCEEEE------EE--CSSCSEEEEEEEE
T ss_pred EEEeCCCcEEEE------Ee--CCCcEEEEEEEEe
Confidence 344579999996 34 5699999987664
No 8
>2kha_A Beta-1,3-glucan-binding protein; glycoprotein, immune response, innate immunity, secreted, sugar binding protein; NMR {Plodia interpunctella}
Probab=26.75 E-value=19 Score=23.61 Aligned_cols=47 Identities=17% Similarity=0.487 Sum_probs=28.2
Q ss_pred eeEEecCCcccCCCCCCcccccccccceeeeccCCCCccceecceeeeecCCeeeEecCC
Q psy12822 6 FSRVYPKGQRIDSSNYNPVPLWNVGSQMLALNFQTPDKAMQVNHAKFRMNGGCGYLLRPA 65 (82)
Q Consensus 6 l~RvyP~g~R~~SsN~~P~~~W~~G~QmvAlN~Qt~d~~m~ln~~~F~~NG~cGYVlKP~ 65 (82)
+.-.+|+|.|++ ++ .-|.+++|.+.+-....-.++.|-+ |..|.||.
T Consensus 19 ve~l~PkGf~VS------Ip--epGi~lFaFh~~iN~~~~~~~~G~~-----~~dit~~~ 65 (130)
T 2kha_A 19 LEAIYPRGLRVS------IP--DDGFSLFAFHGKLNEEMDGLEAGHW-----ARDITKPK 65 (130)
T ss_dssp EEEETTTEEEEE------EE--CCSCSEEEEEEEESCCCSSCCCCSE-----EEEECSCS
T ss_pred EEEeCCCCEEEE------Ee--CCCcEEEEEEEEccCCCccccccee-----eeeeeeec
Confidence 344579999986 44 6699999987764333222332222 55566664
No 9
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=26.49 E-value=23 Score=20.33 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=10.6
Q ss_pred ecCCeeeEecCCc
Q psy12822 54 MNGGCGYLLRPAF 66 (82)
Q Consensus 54 ~NG~cGYVlKP~~ 66 (82)
..|-.+|+.||..
T Consensus 93 ~~ga~~~l~KP~~ 105 (120)
T 3f6p_A 93 EIGADDYVTKPFS 105 (120)
T ss_dssp HTTCCEEEEESCC
T ss_pred hCCcceeEcCCCC
Confidence 4588999999964
No 10
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=26.28 E-value=26 Score=20.29 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=10.3
Q ss_pred ecCCeeeEecCCc
Q psy12822 54 MNGGCGYLLRPAF 66 (82)
Q Consensus 54 ~NG~cGYVlKP~~ 66 (82)
..|-.+|+.||..
T Consensus 101 ~~g~~~~l~KP~~ 113 (129)
T 3h1g_A 101 KAGVNNYIVKPFT 113 (129)
T ss_dssp HHTCCEEEESCCC
T ss_pred HcCccEEEeCCCC
Confidence 3478999999964
No 11
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=26.27 E-value=25 Score=19.66 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=9.8
Q ss_pred cCCeeeEecCCc
Q psy12822 55 NGGCGYLLRPAF 66 (82)
Q Consensus 55 NG~cGYVlKP~~ 66 (82)
.|-.||+.||..
T Consensus 93 ~g~~~~l~Kp~~ 104 (120)
T 2a9o_A 93 LGADDYVTKPFS 104 (120)
T ss_dssp HTCSEEEESSCC
T ss_pred CCHhheEeCCCC
Confidence 477899999954
No 12
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=26.18 E-value=25 Score=19.75 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=10.2
Q ss_pred ecCCeeeEecCCc
Q psy12822 54 MNGGCGYLLRPAF 66 (82)
Q Consensus 54 ~NG~cGYVlKP~~ 66 (82)
..|-.||+.||..
T Consensus 92 ~~g~~~~l~kp~~ 104 (121)
T 2pl1_A 92 SAGADDYVTKPFH 104 (121)
T ss_dssp HTTCSEEEESSCC
T ss_pred HcCccceEECCCC
Confidence 3477899999954
No 13
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=26.14 E-value=17 Score=22.78 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=9.3
Q ss_pred CCeeeEecCCc
Q psy12822 56 GGCGYLLRPAF 66 (82)
Q Consensus 56 G~cGYVlKP~~ 66 (82)
|..||+.||-.
T Consensus 98 g~~~yl~KP~~ 108 (123)
T 2lpm_A 98 SNIPLLTKPFL 108 (123)
T ss_dssp CSCSCBCSSSS
T ss_pred CCCcEEECCCC
Confidence 77899999954
No 14
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=25.94 E-value=26 Score=19.86 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=9.7
Q ss_pred cCCeeeEecCCc
Q psy12822 55 NGGCGYLLRPAF 66 (82)
Q Consensus 55 NG~cGYVlKP~~ 66 (82)
-|-.||+.||..
T Consensus 95 ~g~~~~l~KP~~ 106 (123)
T 1xhf_A 95 IGADDYITKPFN 106 (123)
T ss_dssp HTCSEEEESSCC
T ss_pred cCcceEEeCCCC
Confidence 477899999954
No 15
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=25.86 E-value=28 Score=20.04 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=9.9
Q ss_pred cCCeeeEecCCc
Q psy12822 55 NGGCGYLLRPAF 66 (82)
Q Consensus 55 NG~cGYVlKP~~ 66 (82)
.|-.||+.||..
T Consensus 98 ~ga~~~l~KP~~ 109 (130)
T 1dz3_A 98 LGASYFILKPFD 109 (130)
T ss_dssp TTCEEEEECSSC
T ss_pred cCCCEEEeCCCC
Confidence 478999999954
No 16
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=25.35 E-value=27 Score=20.28 Aligned_cols=13 Identities=38% Similarity=0.401 Sum_probs=10.3
Q ss_pred ecCCeeeEecCCc
Q psy12822 54 MNGGCGYLLRPAF 66 (82)
Q Consensus 54 ~NG~cGYVlKP~~ 66 (82)
..|-.||+.||..
T Consensus 103 ~~ga~~~l~KP~~ 115 (136)
T 1dcf_A 103 SFGLDGVLLKPVS 115 (136)
T ss_dssp HTTCCEEEESSCC
T ss_pred HcCCCeEEECCCC
Confidence 3477899999954
No 17
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=25.02 E-value=27 Score=19.70 Aligned_cols=12 Identities=25% Similarity=0.426 Sum_probs=9.8
Q ss_pred cCCeeeEecCCc
Q psy12822 55 NGGCGYLLRPAF 66 (82)
Q Consensus 55 NG~cGYVlKP~~ 66 (82)
-|-.+|+.||..
T Consensus 94 ~ga~~~l~Kp~~ 105 (122)
T 1zgz_A 94 MGADDYVTKPLE 105 (122)
T ss_dssp HTCSEEEESSCC
T ss_pred hCHHHHccCCCC
Confidence 478899999954
No 18
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=24.66 E-value=28 Score=20.08 Aligned_cols=13 Identities=15% Similarity=0.107 Sum_probs=10.4
Q ss_pred ecCCeeeEecCCc
Q psy12822 54 MNGGCGYLLRPAF 66 (82)
Q Consensus 54 ~NG~cGYVlKP~~ 66 (82)
..|-.+|+.||..
T Consensus 96 ~~Ga~~~l~KP~~ 108 (122)
T 3gl9_A 96 SLGARKVMRKPFS 108 (122)
T ss_dssp HTTCSEEEESSCC
T ss_pred hcChhhhccCCCC
Confidence 4578999999964
No 19
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=23.98 E-value=29 Score=21.83 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=10.4
Q ss_pred ecCCeeeEecCCc
Q psy12822 54 MNGGCGYLLRPAF 66 (82)
Q Consensus 54 ~NG~cGYVlKP~~ 66 (82)
.-|-.+|+.||-.
T Consensus 107 ~~Ga~~yl~KP~~ 119 (134)
T 3to5_A 107 QAGVNGYIVKPFT 119 (134)
T ss_dssp HTTCCEEEESSCC
T ss_pred HCCCCEEEECCCC
Confidence 3588999999954
No 20
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=23.62 E-value=30 Score=20.11 Aligned_cols=12 Identities=25% Similarity=0.689 Sum_probs=9.9
Q ss_pred cCCeeeEecCCc
Q psy12822 55 NGGCGYLLRPAF 66 (82)
Q Consensus 55 NG~cGYVlKP~~ 66 (82)
.|-.|||.||..
T Consensus 96 ~ga~~~l~KP~~ 107 (132)
T 3crn_A 96 AGADAYIMKPVN 107 (132)
T ss_dssp TTCSEEEESSCC
T ss_pred ccchhhccCCCC
Confidence 478999999954
No 21
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=23.61 E-value=27 Score=19.55 Aligned_cols=12 Identities=8% Similarity=0.072 Sum_probs=9.6
Q ss_pred cCCeeeEecCCc
Q psy12822 55 NGGCGYLLRPAF 66 (82)
Q Consensus 55 NG~cGYVlKP~~ 66 (82)
-|..||+.||..
T Consensus 92 ~g~~~~l~Kp~~ 103 (116)
T 3a10_A 92 WAADEYVVKSFN 103 (116)
T ss_dssp GGSSEEEECCSS
T ss_pred ccccceEECCCC
Confidence 467899999954
No 22
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=23.59 E-value=31 Score=19.39 Aligned_cols=13 Identities=15% Similarity=0.457 Sum_probs=10.2
Q ss_pred ecCCeeeEecCCc
Q psy12822 54 MNGGCGYLLRPAF 66 (82)
Q Consensus 54 ~NG~cGYVlKP~~ 66 (82)
..|-.+|+.||..
T Consensus 95 ~~g~~~~l~KP~~ 107 (120)
T 1tmy_A 95 KAGAKDFIVKPFQ 107 (120)
T ss_dssp HTTCCEEEESSCC
T ss_pred HhCcceeEeCCCC
Confidence 3477899999954
No 23
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=23.47 E-value=31 Score=19.31 Aligned_cols=12 Identities=33% Similarity=0.451 Sum_probs=9.7
Q ss_pred cCCeeeEecCCc
Q psy12822 55 NGGCGYLLRPAF 66 (82)
Q Consensus 55 NG~cGYVlKP~~ 66 (82)
.|-.+|+.||..
T Consensus 93 ~g~~~~l~Kp~~ 104 (121)
T 1zh2_A 93 AGADDYLSKPFG 104 (121)
T ss_dssp HTCSEEEESSCC
T ss_pred cCCCeEEeCCcC
Confidence 477899999954
No 24
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=22.90 E-value=32 Score=19.79 Aligned_cols=13 Identities=23% Similarity=0.347 Sum_probs=10.3
Q ss_pred ecCCeeeEecCCc
Q psy12822 54 MNGGCGYLLRPAF 66 (82)
Q Consensus 54 ~NG~cGYVlKP~~ 66 (82)
.-|-.||+.||..
T Consensus 95 ~~g~~~~l~KP~~ 107 (136)
T 1mvo_A 95 ELGADDYMTKPFS 107 (136)
T ss_dssp HTTCCEEEESSCC
T ss_pred hCCCCEEEECCCC
Confidence 3478999999964
No 25
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=22.37 E-value=33 Score=20.17 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=10.0
Q ss_pred cCCeeeEecCCc
Q psy12822 55 NGGCGYLLRPAF 66 (82)
Q Consensus 55 NG~cGYVlKP~~ 66 (82)
.|-.+|+.||..
T Consensus 99 ~ga~~~l~KP~~ 110 (136)
T 3t6k_A 99 AGANDYLAKPFE 110 (136)
T ss_dssp HTCSEEEETTCC
T ss_pred cCcceEEeCCCC
Confidence 478999999964
No 26
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=22.32 E-value=33 Score=19.94 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=10.0
Q ss_pred cCCeeeEecCCc
Q psy12822 55 NGGCGYLLRPAF 66 (82)
Q Consensus 55 NG~cGYVlKP~~ 66 (82)
.|-.|||.||..
T Consensus 98 ~ga~~~l~Kp~~ 109 (133)
T 3b2n_A 98 NDVDAYVLKERS 109 (133)
T ss_dssp TTCSEEEETTSC
T ss_pred cCCcEEEECCCC
Confidence 478999999964
No 27
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=22.13 E-value=34 Score=20.10 Aligned_cols=12 Identities=42% Similarity=0.877 Sum_probs=9.9
Q ss_pred cCCeeeEecCCc
Q psy12822 55 NGGCGYLLRPAF 66 (82)
Q Consensus 55 NG~cGYVlKP~~ 66 (82)
-|-.||+.||..
T Consensus 96 ~ga~~~l~KP~~ 107 (136)
T 2qzj_A 96 SGGDDYLIKPLN 107 (136)
T ss_dssp TTCCEEEESSCC
T ss_pred cCCcEEEECCCC
Confidence 478999999964
No 28
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=21.98 E-value=33 Score=19.46 Aligned_cols=12 Identities=17% Similarity=0.102 Sum_probs=9.8
Q ss_pred cCCeeeEecCCc
Q psy12822 55 NGGCGYLLRPAF 66 (82)
Q Consensus 55 NG~cGYVlKP~~ 66 (82)
.|-.||+.||..
T Consensus 96 ~g~~~~l~KP~~ 107 (124)
T 1srr_A 96 LGALTHFAKPFD 107 (124)
T ss_dssp HTCCCEEESSCC
T ss_pred cChHhhccCCCC
Confidence 477999999954
No 29
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=21.69 E-value=35 Score=19.42 Aligned_cols=12 Identities=33% Similarity=0.852 Sum_probs=9.7
Q ss_pred cCCeeeEecCCc
Q psy12822 55 NGGCGYLLRPAF 66 (82)
Q Consensus 55 NG~cGYVlKP~~ 66 (82)
.|-.+|+.||..
T Consensus 100 ~ga~~~l~KP~~ 111 (128)
T 1jbe_A 100 AGASGYVVKPFT 111 (128)
T ss_dssp TTCSEEEESSCC
T ss_pred hCcCceeecCCC
Confidence 477899999954
No 30
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=21.60 E-value=30 Score=19.70 Aligned_cols=12 Identities=25% Similarity=0.285 Sum_probs=9.6
Q ss_pred cCCeeeEecCCc
Q psy12822 55 NGGCGYLLRPAF 66 (82)
Q Consensus 55 NG~cGYVlKP~~ 66 (82)
-|-.+|+.||..
T Consensus 102 ~g~~~~l~KP~~ 113 (129)
T 1p6q_A 102 LGANNVLAKPFT 113 (129)
T ss_dssp HTCSCEECCCSS
T ss_pred cCCCEEEECCCC
Confidence 477899999954
No 31
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=21.42 E-value=32 Score=19.49 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=10.2
Q ss_pred ecCCeeeEecCCc
Q psy12822 54 MNGGCGYLLRPAF 66 (82)
Q Consensus 54 ~NG~cGYVlKP~~ 66 (82)
..|-.||+.||..
T Consensus 96 ~~ga~~~l~Kp~~ 108 (127)
T 2jba_A 96 ETGADDCITKPFS 108 (127)
T ss_dssp CCSCSEEEEESCC
T ss_pred hcCCCeEEeCCCC
Confidence 3477899999964
No 32
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=21.29 E-value=32 Score=19.37 Aligned_cols=12 Identities=25% Similarity=0.493 Sum_probs=9.8
Q ss_pred cCCeeeEecCCc
Q psy12822 55 NGGCGYLLRPAF 66 (82)
Q Consensus 55 NG~cGYVlKP~~ 66 (82)
.|-.||+.||..
T Consensus 96 ~g~~~~l~KP~~ 107 (124)
T 1mb3_A 96 GGCEAYISKPIS 107 (124)
T ss_dssp HTCSEEECSSCC
T ss_pred CCCCEEEeCCCC
Confidence 477899999954
No 33
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=21.04 E-value=38 Score=19.38 Aligned_cols=12 Identities=33% Similarity=0.362 Sum_probs=10.1
Q ss_pred ecCCeeeEecCC
Q psy12822 54 MNGGCGYLLRPA 65 (82)
Q Consensus 54 ~NG~cGYVlKP~ 65 (82)
..|-.+|+.||.
T Consensus 99 ~~g~~~~l~KP~ 110 (130)
T 3eod_A 99 RLGVEDVLLKPV 110 (130)
T ss_dssp HHCCSEEEESCC
T ss_pred HcCCCEEEeCCC
Confidence 458899999996
No 34
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=21.03 E-value=33 Score=20.26 Aligned_cols=13 Identities=15% Similarity=0.123 Sum_probs=9.4
Q ss_pred ecCCeeeEecCCc
Q psy12822 54 MNGGCGYLLRPAF 66 (82)
Q Consensus 54 ~NG~cGYVlKP~~ 66 (82)
..|-.+||.||..
T Consensus 97 ~~ga~~~l~KP~~ 109 (141)
T 3cu5_A 97 KFRAIRYVEKPID 109 (141)
T ss_dssp --CCCEEECSSCC
T ss_pred hCCccEEEeCCCC
Confidence 3478899999954
No 35
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=20.43 E-value=37 Score=20.15 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=10.9
Q ss_pred ecCCeeeEecCCcc
Q psy12822 54 MNGGCGYLLRPAFM 67 (82)
Q Consensus 54 ~NG~cGYVlKP~~l 67 (82)
..|-.+|+.||...
T Consensus 110 ~~Ga~~~l~KP~~~ 123 (143)
T 3m6m_D 110 QAGARAFLAKPVVA 123 (143)
T ss_dssp HTTCSEEEESSCCH
T ss_pred HcChhheeeCCCCH
Confidence 35789999999653
No 36
>2oyy_A Hexameric cytochrome; all helical, unknown function; HET: HEM; 2.50A {Silicibacter pomeroyi}
Probab=20.31 E-value=5.7 Score=24.34 Aligned_cols=11 Identities=45% Similarity=0.504 Sum_probs=9.3
Q ss_pred ccceeeeccCC
Q psy12822 30 GSQMLALNFQT 40 (82)
Q Consensus 30 G~QmvAlN~Qt 40 (82)
-.|+||.+|||
T Consensus 56 ~sqvvA~~F~T 66 (76)
T 2oyy_A 56 VSAVVATHFQT 66 (76)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46899999997
Done!