RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12822
         (82 letters)



>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
           barrel domain, hydrolase, calcium binding, phospholipid
           binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
          Length = 816

 Score = 95.8 bits (237), Expect = 4e-25
 Identities = 39/76 (51%), Positives = 48/76 (63%), Gaps = 2/76 (2%)

Query: 5   QFSRVYPKGQRIDSSNYNPVPLWNVGSQMLALNFQTPDKAMQVNHAKFRMNGGCGYLLRP 64
           Q +R+YPKG R+DSSNY P   WN G Q++ALNFQ  D AM VN   F  NG  GYLL+P
Sbjct: 567 QITRIYPKGTRVDSSNYVPQIYWNAGCQLVALNFQCFDIAMCVNLGVFEYNGCSGYLLKP 626

Query: 65  AFM--FSESYDPYDPE 78
            FM    + +DP+   
Sbjct: 627 EFMRKLDKRFDPFTES 642


>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
           phosphoric diester hydrolase, hydrolase, lipid
           degradation, transducer; HET: I3P; 2.30A {Rattus
           norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
           1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
           1qat_A
          Length = 624

 Score = 95.7 bits (237), Expect = 4e-25
 Identities = 37/76 (48%), Positives = 48/76 (63%)

Query: 5   QFSRVYPKGQRIDSSNYNPVPLWNVGSQMLALNFQTPDKAMQVNHAKFRMNGGCGYLLRP 64
             SR+YP G R DSSNY+PV +WN G Q++ALNFQTP   M V    F+ NGGCGY+L+P
Sbjct: 414 CLSRIYPAGWRTDSSNYSPVEMWNGGCQIVALNFQTPGPEMDVYLGCFQDNGGCGYVLKP 473

Query: 65  AFMFSESYDPYDPENS 80
           AF+   +        +
Sbjct: 474 AFLRDPNTTFNSRALT 489


>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
           phospholipase C, phosphoinositide phospholipase,
           PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
           SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
          Length = 799

 Score = 93.5 bits (231), Expect = 3e-24
 Identities = 40/76 (52%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 5   QFSRVYPKGQRIDSSNYNPVPLWNVGSQMLALNFQTPDKAMQVNHAKFRMNGGCGYLLRP 64
           Q SR+YPKG R+DSSNY P   WN G QM+ALNFQT D  MQ N A F  NG  GYLL+ 
Sbjct: 595 QMSRIYPKGTRMDSSNYMPQMFWNAGCQMVALNFQTMDLPMQQNMAVFEFNGQSGYLLKH 654

Query: 65  AFMFSESY--DPYDPE 78
            FM       +P+  +
Sbjct: 655 EFMRRPDKQFNPFSVD 670


>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
           domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
           C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
          Length = 885

 Score = 93.2 bits (230), Expect = 4e-24
 Identities = 43/76 (56%), Positives = 51/76 (67%), Gaps = 2/76 (2%)

Query: 5   QFSRVYPKGQRIDSSNYNPVPLWNVGSQMLALNFQTPDKAMQVNHAKFRMNGGCGYLLRP 64
           Q SR+YPKG R+DSSNY P   WNVG Q++ALNFQT D AMQ+N   F  NG  GYLL+P
Sbjct: 642 QLSRIYPKGTRVDSSNYMPQLFWNVGCQLVALNFQTLDVAMQLNAGVFEYNGRSGYLLKP 701

Query: 65  AFMFSE--SYDPYDPE 78
            FM     S+DP+   
Sbjct: 702 EFMRRPDKSFDPFTEV 717


>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1;
           transferase, ATP sulfurylase, APS kinase, PAPS; HET:
           ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5
           c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
          Length = 630

 Score = 26.3 bits (58), Expect = 0.99
 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 8/36 (22%)

Query: 49  HAKFRMNGGCGYLL--R-PAFMFSES-----YDPYD 76
           H + RM  G  + +  R PA M         Y+P  
Sbjct: 506 HCRARMVAGANFYIVGRDPAGMPHPETGKDLYEPSH 541


>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal
          protein, nucleus, phosphoprotein, repressor, telomere;
          HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
          Length = 168

 Score = 25.1 bits (54), Expect = 2.9
 Identities = 6/20 (30%), Positives = 9/20 (45%)

Query: 62 LRPAFMFSESYDPYDPENSY 81
          +R  F   + YD  DP+   
Sbjct: 3  IRSDFSNEDIYDNIDPDTIS 22


>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition,
          actin dynamics, contractIle protein; 1.80A {Mus
          musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
          Length = 112

 Score = 24.2 bits (52), Expect = 5.2
 Identities = 6/20 (30%), Positives = 9/20 (45%)

Query: 27 WNVGSQMLALNFQTPDKAMQ 46
          W    Q+  LNF + + A  
Sbjct: 80 WRDARQVYGLNFGSKEDANV 99


>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A
           {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
          Length = 118

 Score = 23.4 bits (50), Expect = 9.2
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 4/35 (11%)

Query: 27  WNVGSQMLALNFQTPDKAMQ----VNHAKFRMNGG 57
           W +G +   L FQ+P  A      +  A   ++ G
Sbjct: 84  WRIGDKKFGLTFQSPADARAFDRGIRRAIEDLSQG 118


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.136    0.430 

Gapped
Lambda     K      H
   0.267   0.0543    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,234,905
Number of extensions: 54262
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 9
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)