BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12823
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RL4|A Chain A, Rat Metallophosphodiesterase Mpped2 G252h Mutant
Length = 296
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 134/302 (44%), Positives = 176/302 (58%), Gaps = 30/302 (9%)
Query: 1 MSIPIHPLTQNPTAAWKELSGSQKVIKINVQPPKTQ-VDP---------KKVRVVCMSDT 50
++I + + NPT A+ + +Q QPP VDP R VC+SDT
Sbjct: 13 VTITVDEYSSNPTQAFTHYNINQS----RFQPPHVHMVDPIPYDTPKPAGHTRFVCISDT 68
Query: 51 HSLTPHIRFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELSFDP 110
HS T I+ +P GDI +H GDFT G EV +FN W+GNLP+++K+VIAGNHEL+FD
Sbjct: 69 HSRTDGIQ--MPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKIVIAGNHELTFDK 126
Query: 111 TFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYG 170
F M + + P S + N++ LTN YLQD E + G
Sbjct: 127 EF-------------MADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQDSEVTVKG 173
Query: 171 IKFYGTPWQPEFCKWAFNVPRGEACLSKWQDIPADTDVLISHTPPIGHGDLCCTGL-RAG 229
+ YG PW P F W FN+PRG++ L KW IP TD+L++H PP+G D L R G
Sbjct: 174 FRIYGAPWTPWFNGWGFNLPRGQSLLDKWNLIPEGTDILMTHGPPLGFRDWVPKELQRVG 233
Query: 230 CVELLTTVQQRVKPKYHVFGHVHEGYGITSDGRIIFINASTCDLNYLPTNPPIVFDIALP 289
CVELL TVQ+RV+PK HVFGH+HEGYG +DG +INASTC +++ PTNPPI+FD+ P
Sbjct: 234 CVELLNTVQRRVRPKLHVFGHIHEGYGTMTDGYTTYINASTCTVSFQPTNPPIIFDLPNP 293
Query: 290 PG 291
G
Sbjct: 294 QG 295
>pdb|3RL3|A Chain A, Rat Metallophosphodiesterase Mpped2
Length = 296
Score = 242 bits (618), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 133/302 (44%), Positives = 175/302 (57%), Gaps = 30/302 (9%)
Query: 1 MSIPIHPLTQNPTAAWKELSGSQKVIKINVQPPKTQ-VDP---------KKVRVVCMSDT 50
++I + + NPT A+ + +Q QPP VDP R VC+SDT
Sbjct: 13 VTITVDEYSSNPTQAFTHYNINQS----RFQPPHVHMVDPIPYDTPKPAGHTRFVCISDT 68
Query: 51 HSLTPHIRFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELSFDP 110
HS T I+ +P GDI +H GDFT G EV +FN W+GNLP+++K+VIAGNHEL+FD
Sbjct: 69 HSRTDGIQ--MPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKIVIAGNHELTFDK 126
Query: 111 TFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYG 170
F M + + P S + N++ LTN YLQD E + G
Sbjct: 127 EF-------------MADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQDSEVTVKG 173
Query: 171 IKFYGTPWQPEFCKWAFNVPRGEACLSKWQDIPADTDVLISHTPPIGHGDLCCTGL-RAG 229
+ YG PW P F W FN+PRG++ L KW IP TD+L++H PP+G D L R G
Sbjct: 174 FRIYGAPWTPWFNGWGFNLPRGQSLLDKWNLIPEGTDILMTHGPPLGFRDWVPKELQRVG 233
Query: 230 CVELLTTVQQRVKPKYHVFGHVHEGYGITSDGRIIFINASTCDLNYLPTNPPIVFDIALP 289
CVELL TVQ+RV+PK HVFG +HEGYG +DG +INASTC +++ PTNPPI+FD+ P
Sbjct: 234 CVELLNTVQRRVRPKLHVFGGIHEGYGTMTDGYTTYINASTCTVSFQPTNPPIIFDLPNP 293
Query: 290 PG 291
G
Sbjct: 294 QG 295
>pdb|3RL5|A Chain A, Rat Metallophosphodiesterase Mpped2 H67r Mutant
Length = 296
Score = 239 bits (611), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 132/302 (43%), Positives = 174/302 (57%), Gaps = 30/302 (9%)
Query: 1 MSIPIHPLTQNPTAAWKELSGSQKVIKINVQPPKTQ-VDP---------KKVRVVCMSDT 50
++I + + NPT A+ + +Q QPP VDP R VC+SDT
Sbjct: 13 VTITVDEYSSNPTQAFTHYNINQS----RFQPPHVHMVDPIPYDTPKPAGHTRFVCISDT 68
Query: 51 HSLTPHIRFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELSFDP 110
S T I+ +P GDI +H GDFT G EV +FN W+GNLP+++K+VIAGNHEL+FD
Sbjct: 69 RSRTDGIQ--MPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKIVIAGNHELTFDK 126
Query: 111 TFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYG 170
F M + + P S + N++ LTN YLQD E + G
Sbjct: 127 EF-------------MADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQDSEVTVKG 173
Query: 171 IKFYGTPWQPEFCKWAFNVPRGEACLSKWQDIPADTDVLISHTPPIGHGDLCCTGL-RAG 229
+ YG PW P F W FN+PRG++ L KW IP TD+L++H PP+G D L R G
Sbjct: 174 FRIYGAPWTPWFNGWGFNLPRGQSLLDKWNLIPEGTDILMTHGPPLGFRDWVPKELQRVG 233
Query: 230 CVELLTTVQQRVKPKYHVFGHVHEGYGITSDGRIIFINASTCDLNYLPTNPPIVFDIALP 289
CVELL TVQ+RV+PK HVFG +HEGYG +DG +INASTC +++ PTNPPI+FD+ P
Sbjct: 234 CVELLNTVQRRVRPKLHVFGGIHEGYGTMTDGYTTYINASTCTVSFQPTNPPIIFDLPNP 293
Query: 290 PG 291
G
Sbjct: 294 QG 295
>pdb|1S3L|A Chain A, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3L|B Chain B, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3M|A Chain A, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3M|B Chain B, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3N|A Chain A, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
pdb|1S3N|B Chain B, Structural And Functional Characterization Of A Novel
Archaeal Phosphodiesterase
Length = 190
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 42 VRVVCMSDTHSLTPHIR-----FNIPDGDIFIHAGDFTRCGGEEEVTEFNTWI 89
+++ MSDTH P+IR FN + + IH GDF +E N I
Sbjct: 26 MKIGIMSDTHDHLPNIRKAIEIFNDENVETVIHCGDFVSLFVIKEFENLNANI 78
>pdb|2AHD|A Chain A, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
pdb|2AHD|B Chain B, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
pdb|2AHD|C Chain C, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
pdb|2AHD|D Chain D, The Apo Structure Of Methanococcus Jannaschii
Phosphodiesterase Mj0936
Length = 165
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 42 VRVVCMSDTHSLTPHIR-----FNIPDGDIFIHAGDFT 74
+++ MSDTH P+IR FN + + IH GDF
Sbjct: 1 MKIGIMSDTHDHLPNIRKAIEIFNDENVETVIHCGDFV 38
>pdb|3LTF|A Chain A, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain In Complex With Spitz
pdb|3LTF|C Chain C, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain In Complex With Spitz
pdb|3LTG|A Chain A, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain Complexed With A Low Affinity
Spitz Mutant
pdb|3LTG|C Chain C, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain Complexed With A Low Affinity
Spitz Mutant
Length = 601
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 149 RNMRDRLTNCTYL 161
RN+RDR TNCTY+
Sbjct: 27 RNLRDRYTNCTYV 39
>pdb|3I2T|A Chain A, Crystal Structure Of The Unliganded Drosophila Epidermal
Growth Factor Receptor Ectodomain
Length = 551
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 149 RNMRDRLTNCTYL 161
RN+RDR TNCTY+
Sbjct: 27 RNLRDRYTNCTYV 39
>pdb|4B87|A Chain A, Crystal Structure Of Human Dna Cross-Link Repair 1a
Length = 367
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 18 ELSGSQKVIKINVQ-------PPKTQVDPKKVRVVCMSDTHS-LTPHIRFNIPDGDIFIH 69
E++G+ K++VQ P T+ V+VV + H I F +P+G + +H
Sbjct: 80 EITGNLLKNKLHVQEQYIHPLPLDTECIVNGVKVVLLDANHCPGAVMILFYLPNGTVILH 139
Query: 70 AGDF 73
GDF
Sbjct: 140 TGDF 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,146,978
Number of Sequences: 62578
Number of extensions: 446326
Number of successful extensions: 750
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 736
Number of HSP's gapped (non-prelim): 8
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)