Query psy12823
Match_columns 295
No_of_seqs 181 out of 1345
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 20:45:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12823.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12823hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3947|consensus 100.0 4.8E-38 1E-42 270.4 20.4 283 1-295 19-305 (305)
2 cd07388 MPP_Tt1561 Thermus the 99.9 9.5E-27 2.1E-31 201.9 17.8 190 40-274 3-209 (224)
3 cd07392 MPP_PAE1087 Pyrobaculu 99.9 2E-26 4.4E-31 194.7 18.3 181 44-269 1-188 (188)
4 COG2129 Predicted phosphoester 99.9 7.2E-25 1.6E-29 185.8 15.2 191 40-273 2-206 (226)
5 cd07379 MPP_239FB Homo sapiens 99.9 2.4E-22 5.3E-27 161.8 15.8 131 43-269 1-135 (135)
6 PRK11340 phosphodiesterase Yae 99.9 4.6E-22 1E-26 178.4 15.7 201 24-288 34-270 (271)
7 PRK11148 cyclic 3',5'-adenosin 99.9 1.5E-21 3.3E-26 175.5 18.5 196 35-272 8-225 (275)
8 TIGR03729 acc_ester putative p 99.9 6.6E-22 1.4E-26 174.3 12.6 189 43-271 1-238 (239)
9 cd07402 MPP_GpdQ Enterobacter 99.9 2.2E-21 4.8E-26 170.6 15.2 192 43-275 1-214 (240)
10 cd07397 MPP_DevT Myxococcus xa 99.9 2.9E-21 6.4E-26 168.1 14.9 194 42-272 1-235 (238)
11 PF14582 Metallophos_3: Metall 99.8 2.5E-20 5.5E-25 157.7 12.3 196 40-274 4-238 (255)
12 cd07393 MPP_DR1119 Deinococcus 99.8 1.4E-19 2.9E-24 158.9 16.5 187 44-276 1-231 (232)
13 cd07404 MPP_MS158 Microscilla 99.8 1.6E-19 3.5E-24 150.3 15.0 152 44-268 1-163 (166)
14 cd07385 MPP_YkuE_C Bacillus su 99.8 3.9E-19 8.5E-24 154.5 17.5 185 41-288 1-223 (223)
15 cd07396 MPP_Nbla03831 Homo sap 99.8 1.4E-18 3E-23 155.6 15.2 200 42-283 1-255 (267)
16 cd07400 MPP_YydB Bacillus subt 99.8 6.5E-18 1.4E-22 137.1 13.5 124 44-270 1-144 (144)
17 cd07395 MPP_CSTP1 Homo sapiens 99.7 8.3E-17 1.8E-21 143.6 17.6 209 39-286 2-250 (262)
18 PHA03008 hypothetical protein; 99.7 5.2E-17 1.1E-21 133.4 14.6 200 42-272 1-224 (234)
19 cd00840 MPP_Mre11_N Mre11 nucl 99.7 3.6E-17 7.9E-22 141.8 12.1 184 43-272 1-218 (223)
20 COG1408 Predicted phosphohydro 99.7 4.9E-17 1.1E-21 146.1 12.6 88 21-108 24-119 (284)
21 COG1409 Icc Predicted phosphoh 99.7 2.8E-16 6E-21 141.5 16.1 65 42-107 1-78 (301)
22 cd00844 MPP_Dbr1_N Dbr1 RNA la 99.7 2E-16 4.4E-21 140.6 14.5 192 44-271 1-255 (262)
23 TIGR00040 yfcE phosphoesterase 99.7 6.4E-16 1.4E-20 127.6 14.6 146 42-290 1-152 (158)
24 PRK09453 phosphodiesterase; Pr 99.7 4E-16 8.7E-21 131.9 13.5 65 42-107 1-76 (182)
25 cd07399 MPP_YvnB Bacillus subt 99.7 4.6E-16 9.9E-21 134.9 10.4 65 42-106 1-81 (214)
26 PF12850 Metallophos_2: Calcin 99.7 2.9E-16 6.2E-21 128.5 8.5 137 42-274 1-140 (156)
27 cd07401 MPP_TMEM62_N Homo sapi 99.6 4.9E-15 1.1E-19 131.9 15.0 193 44-272 2-233 (256)
28 cd07403 MPP_TTHA0053 Thermus t 99.6 3.1E-15 6.8E-20 119.5 11.6 61 208-270 59-123 (129)
29 COG1768 Predicted phosphohydro 99.6 5E-15 1.1E-19 120.9 11.8 167 42-256 1-201 (230)
30 cd07394 MPP_Vps29 Homo sapiens 99.6 2.6E-14 5.6E-19 120.4 16.3 143 43-288 1-154 (178)
31 cd07383 MPP_Dcr2 Saccharomyces 99.6 4.4E-15 9.5E-20 127.3 11.7 65 41-106 2-88 (199)
32 cd00839 MPP_PAPs purple acid p 99.6 7.1E-15 1.5E-19 133.1 13.7 207 39-273 2-239 (294)
33 cd00841 MPP_YfcE Escherichia c 99.6 1.3E-14 2.9E-19 119.1 13.5 130 43-274 1-133 (155)
34 COG0622 Predicted phosphoester 99.6 4.3E-14 9.4E-19 117.7 15.5 133 41-273 1-139 (172)
35 PF00149 Metallophos: Calcineu 99.6 9.1E-16 2E-20 124.9 4.1 65 42-107 1-78 (200)
36 cd08163 MPP_Cdc1 Saccharomyces 99.6 1.8E-13 3.9E-18 121.7 16.5 163 61-258 43-232 (257)
37 PLN02533 probable purple acid 99.5 3.9E-13 8.5E-18 127.8 15.8 235 5-273 107-360 (427)
38 PHA02546 47 endonuclease subun 99.5 1.2E-12 2.5E-17 121.3 16.3 164 42-255 1-192 (340)
39 PRK05340 UDP-2,3-diacylglucosa 99.5 2.6E-13 5.6E-18 119.8 10.4 66 42-107 1-83 (241)
40 TIGR00583 mre11 DNA repair pro 99.5 1.8E-12 3.9E-17 121.8 16.3 67 40-107 2-123 (405)
41 cd07378 MPP_ACP5 Homo sapiens 99.4 9.5E-13 2.1E-17 118.2 12.8 79 192-273 154-233 (277)
42 PRK10966 exonuclease subunit S 99.4 5.3E-13 1.1E-17 126.1 9.4 65 42-107 1-87 (407)
43 COG0420 SbcD DNA repair exonuc 99.4 7.3E-13 1.6E-17 124.9 10.1 66 42-107 1-88 (390)
44 TIGR00619 sbcd exonuclease Sbc 99.4 7.7E-13 1.7E-17 117.6 9.0 66 42-107 1-88 (253)
45 cd00842 MPP_ASMase acid sphing 99.3 9.6E-12 2.1E-16 113.0 11.4 186 62-272 67-287 (296)
46 PRK04036 DNA polymerase II sma 99.3 1.4E-10 3E-15 112.5 19.9 71 37-107 239-343 (504)
47 cd07424 MPP_PrpA_PrpB PrpA and 99.3 9.8E-12 2.1E-16 107.2 9.4 61 42-107 1-67 (207)
48 cd08165 MPP_MPPE1 human MPPE1 99.3 3.9E-11 8.4E-16 99.0 11.3 47 61-107 36-89 (156)
49 cd07386 MPP_DNA_pol_II_small_a 99.3 4.8E-11 1.1E-15 105.4 12.2 63 45-107 2-94 (243)
50 TIGR01854 lipid_A_lpxH UDP-2,3 99.3 7.4E-11 1.6E-15 103.5 13.1 62 45-107 2-81 (231)
51 cd00838 MPP_superfamily metall 99.3 5.4E-11 1.2E-15 93.1 11.0 60 45-105 1-69 (131)
52 cd07390 MPP_AQ1575 Aquifex aeo 99.2 1.6E-10 3.4E-15 96.5 11.1 59 45-107 2-82 (168)
53 KOG2863|consensus 99.2 6.4E-11 1.4E-15 106.4 8.1 179 42-256 1-232 (456)
54 PRK09968 serine/threonine-spec 99.2 1E-10 2.3E-15 101.6 8.8 60 43-107 16-81 (218)
55 cd07384 MPP_Cdc1_like Saccharo 99.1 3E-10 6.6E-15 95.0 9.0 48 60-107 42-100 (171)
56 cd08166 MPP_Cdc1_like_1 unchar 99.1 5.6E-10 1.2E-14 94.6 10.5 48 60-107 39-93 (195)
57 PRK11439 pphA serine/threonine 99.1 6.6E-10 1.4E-14 96.6 10.1 63 40-107 15-83 (218)
58 cd07380 MPP_CWF19_N Schizosacc 99.1 8.7E-10 1.9E-14 90.0 9.3 49 206-255 70-123 (150)
59 TIGR03767 P_acnes_RR metalloph 99.1 9.8E-09 2.1E-13 97.3 17.0 107 166-273 296-419 (496)
60 cd07425 MPP_Shelphs Shewanella 99.0 4.5E-10 9.9E-15 96.9 5.6 61 45-107 1-80 (208)
61 COG4186 Predicted phosphoester 99.0 1E-08 2.2E-13 82.4 12.2 61 43-106 5-85 (186)
62 cd07398 MPP_YbbF-LpxH Escheric 98.9 1.4E-09 3.1E-14 93.9 6.7 36 233-270 181-216 (217)
63 cd00845 MPP_UshA_N_like Escher 98.9 1.3E-08 2.8E-13 90.1 12.9 65 42-108 1-83 (252)
64 cd07410 MPP_CpdB_N Escherichia 98.9 4.2E-08 9.1E-13 88.3 14.8 64 205-273 185-249 (277)
65 KOG1432|consensus 98.9 1.2E-07 2.5E-12 85.5 17.2 60 232-291 289-353 (379)
66 COG2908 Uncharacterized protei 98.9 3.8E-09 8.3E-14 91.1 7.1 63 45-107 1-80 (237)
67 PTZ00422 glideosome-associated 98.8 2.1E-07 4.6E-12 86.8 15.6 61 205-273 214-278 (394)
68 cd07406 MPP_CG11883_N Drosophi 98.7 1.2E-07 2.6E-12 84.5 12.1 65 42-108 1-84 (257)
69 KOG1378|consensus 98.7 5E-07 1.1E-11 84.8 16.6 182 37-255 143-345 (452)
70 PRK00166 apaH diadenosine tetr 98.7 1.2E-08 2.7E-13 91.5 5.5 63 42-107 1-69 (275)
71 cd07408 MPP_SA0022_N Staphyloc 98.7 6.7E-07 1.5E-11 79.7 14.4 64 42-107 1-82 (257)
72 cd08164 MPP_Ted1 Saccharomyces 98.7 9.3E-08 2E-12 81.0 8.2 48 60-107 41-111 (193)
73 COG1311 HYS2 Archaeal DNA poly 98.6 1.4E-07 3E-12 88.7 9.0 73 35-107 219-321 (481)
74 KOG2679|consensus 98.6 1.4E-07 3E-12 82.4 7.9 212 34-277 36-279 (336)
75 PHA02239 putative protein phos 98.6 5.2E-08 1.1E-12 85.6 4.9 64 42-107 1-73 (235)
76 KOG3325|consensus 98.6 1.3E-06 2.9E-11 69.6 11.7 131 42-275 1-139 (183)
77 cd07423 MPP_PrpE Bacillus subt 98.6 2.9E-08 6.4E-13 87.2 2.4 64 42-107 1-80 (234)
78 TIGR00024 SbcD_rel_arch putati 98.5 1.4E-07 2.9E-12 82.4 5.4 65 42-107 15-102 (225)
79 cd07411 MPP_SoxB_N Thermus the 98.5 1.9E-06 4.2E-11 77.0 12.3 54 205-273 185-240 (264)
80 PRK09419 bifunctional 2',3'-cy 98.5 5E-06 1.1E-10 88.7 17.3 69 38-108 657-737 (1163)
81 cd07412 MPP_YhcR_N Bacillus su 98.5 6E-06 1.3E-10 74.8 14.8 67 205-273 193-262 (288)
82 TIGR03768 RPA4764 metallophosp 98.5 4.1E-06 9E-11 79.1 13.9 84 189-272 331-437 (492)
83 cd07422 MPP_ApaH Escherichia c 98.4 3E-07 6.5E-12 81.7 5.3 61 44-107 1-67 (257)
84 TIGR00668 apaH bis(5'-nucleosy 98.4 2.9E-07 6.3E-12 82.2 4.8 63 42-107 1-69 (279)
85 cd07409 MPP_CD73_N CD73 ecto-5 98.4 6.4E-06 1.4E-10 74.4 13.6 65 42-108 1-95 (281)
86 cd07391 MPP_PF1019 Pyrococcus 98.4 3E-07 6.5E-12 76.9 3.9 62 45-107 1-88 (172)
87 PRK13625 bis(5'-nucleosyl)-tet 98.3 3.9E-07 8.6E-12 80.6 4.3 64 42-107 1-79 (245)
88 cd07407 MPP_YHR202W_N Saccharo 98.3 2.1E-05 4.6E-10 71.0 14.9 66 40-107 4-97 (282)
89 cd07387 MPP_PolD2_C PolD2 (DNA 98.3 5.7E-05 1.2E-09 67.0 16.7 65 43-107 1-107 (257)
90 KOG2310|consensus 98.3 1.6E-05 3.4E-10 75.7 13.2 40 39-78 11-67 (646)
91 cd07405 MPP_UshA_N Escherichia 98.3 4.5E-05 9.8E-10 69.0 15.8 65 42-108 1-88 (285)
92 KOG3662|consensus 98.2 2.3E-06 5E-11 79.7 6.3 72 39-110 46-147 (410)
93 cd07413 MPP_PA3087 Pseudomonas 98.1 2.7E-06 5.8E-11 74.2 5.1 61 45-107 2-76 (222)
94 cd00144 MPP_PPP_family phospho 98.1 2.5E-06 5.4E-11 74.0 4.3 62 45-108 1-69 (225)
95 PRK09418 bifunctional 2',3'-cy 98.1 0.00012 2.7E-09 74.4 16.5 62 205-273 246-307 (780)
96 PRK09419 bifunctional 2',3'-cy 98.1 9.4E-05 2E-09 79.1 15.4 68 39-108 39-140 (1163)
97 cd07421 MPP_Rhilphs Rhilph pho 98.0 6.3E-06 1.4E-10 74.1 5.2 64 43-108 3-81 (304)
98 PRK09558 ushA bifunctional UDP 98.0 0.00017 3.7E-09 71.3 14.4 71 36-108 29-122 (551)
99 PRK11907 bifunctional 2',3'-cy 98.0 0.00043 9.3E-09 70.8 17.5 68 39-108 113-214 (814)
100 COG1407 Predicted ICC-like pho 97.9 1.4E-05 3E-10 69.5 4.8 69 39-107 17-110 (235)
101 cd08162 MPP_PhoA_N Synechococc 97.9 0.00036 7.9E-09 64.0 14.4 65 42-108 1-92 (313)
102 TIGR01390 CycNucDiestase 2',3' 97.8 0.0007 1.5E-08 67.8 16.1 66 41-108 2-100 (626)
103 PRK09420 cpdB bifunctional 2', 97.8 0.001 2.2E-08 66.9 16.6 69 38-108 22-123 (649)
104 COG0737 UshA 5'-nucleotidase/2 97.8 0.00026 5.7E-09 69.4 12.2 70 37-108 22-116 (517)
105 TIGR01530 nadN NAD pyrophospha 97.8 0.00082 1.8E-08 66.4 15.2 42 65-108 51-95 (550)
106 smart00156 PP2Ac Protein phosp 97.6 0.00011 2.4E-09 66.0 6.0 64 42-107 28-99 (271)
107 KOG2476|consensus 97.5 0.0019 4.1E-08 60.7 12.1 194 42-272 6-228 (528)
108 KOG3770|consensus 97.4 0.0008 1.7E-08 65.2 9.7 46 62-107 209-263 (577)
109 cd07416 MPP_PP2B PP2B, metallo 97.4 0.00029 6.3E-09 64.3 6.1 63 43-107 44-114 (305)
110 cd07420 MPP_RdgC Drosophila me 97.3 0.00035 7.6E-09 64.0 5.7 64 42-107 51-123 (321)
111 cd07415 MPP_PP2A_PP4_PP6 PP2A, 97.3 0.0004 8.7E-09 62.8 5.2 63 43-107 43-113 (285)
112 cd07414 MPP_PP1_PPKL PP1, PPKL 97.2 0.00041 8.9E-09 62.9 5.0 63 43-107 51-121 (293)
113 PTZ00480 serine/threonine-prot 97.1 0.00074 1.6E-08 61.9 5.3 63 43-107 60-130 (320)
114 cd07418 MPP_PP7 PP7, metalloph 97.1 0.00076 1.6E-08 63.0 5.4 64 43-108 67-139 (377)
115 cd07382 MPP_DR1281 Deinococcus 97.1 0.013 2.9E-07 52.1 12.6 61 43-107 1-70 (255)
116 PTZ00239 serine/threonine prot 97.0 0.0011 2.3E-08 60.5 5.5 63 43-107 44-114 (303)
117 PTZ00244 serine/threonine-prot 97.0 0.00092 2E-08 60.7 4.8 62 44-107 54-123 (294)
118 cd07417 MPP_PP5_C PP5, C-termi 96.9 0.0014 3.1E-08 60.1 5.2 65 41-107 59-132 (316)
119 cd07419 MPP_Bsu1_C Arabidopsis 96.9 0.002 4.4E-08 59.0 6.0 63 43-107 49-127 (311)
120 TIGR00282 metallophosphoestera 96.5 0.059 1.3E-06 48.2 12.6 63 42-107 1-71 (266)
121 PF04042 DNA_pol_E_B: DNA poly 96.3 0.0049 1.1E-07 52.9 4.3 65 44-108 1-92 (209)
122 cd07381 MPP_CapA CapA and rela 93.4 2.5 5.4E-05 36.9 13.1 56 205-266 176-231 (239)
123 KOG0373|consensus 92.9 0.16 3.5E-06 43.7 4.5 71 28-107 39-117 (306)
124 KOG0371|consensus 92.9 0.11 2.3E-06 45.8 3.4 63 43-107 61-131 (319)
125 KOG0372|consensus 91.9 0.3 6.5E-06 42.8 4.9 64 44-107 45-114 (303)
126 PTZ00235 DNA polymerase epsilo 91.9 0.64 1.4E-05 41.9 7.1 71 38-108 24-123 (291)
127 KOG0374|consensus 91.4 0.19 4.2E-06 46.4 3.5 65 43-107 60-131 (331)
128 PF09587 PGA_cap: Bacterial ca 87.4 9.1 0.0002 33.7 11.0 56 205-266 185-240 (250)
129 KOG0375|consensus 86.5 0.82 1.8E-05 42.2 3.7 64 44-107 90-159 (517)
130 PF06874 FBPase_2: Firmicute f 83.2 0.78 1.7E-05 45.4 2.2 42 62-107 183-224 (640)
131 smart00854 PGA_cap Bacterial c 76.0 7.2 0.00016 34.1 5.9 56 205-266 174-229 (239)
132 cd07423 MPP_PrpE Bacillus subt 75.5 3.8 8.1E-05 35.8 3.9 31 242-273 181-211 (234)
133 PF09423 PhoD: PhoD-like phosp 75.1 8.2 0.00018 37.2 6.5 39 38-76 102-145 (453)
134 KOG3818|consensus 73.8 12 0.00026 35.7 6.9 72 39-110 280-372 (525)
135 COG3855 Fbp Uncharacterized pr 67.3 3.7 8E-05 39.3 2.1 43 62-108 189-231 (648)
136 COG1692 Calcineurin-like phosp 62.0 15 0.00033 32.4 4.7 63 42-107 1-71 (266)
137 KOG0377|consensus 59.8 12 0.00026 35.8 3.9 76 31-107 153-237 (631)
138 cd07389 MPP_PhoD Bacillus subt 55.6 29 0.00062 29.7 5.5 33 43-75 1-41 (228)
139 TIGR03413 GSH_gloB hydroxyacyl 52.4 31 0.00066 30.3 5.2 41 65-107 119-167 (248)
140 PF13941 MutL: MutL protein 45.2 40 0.00087 32.7 5.1 47 60-107 121-167 (457)
141 TIGR01319 glmL_fam conserved h 44.2 35 0.00076 33.0 4.5 45 61-107 118-163 (463)
142 PRK10241 hydroxyacylglutathion 35.8 67 0.0015 28.2 4.8 40 67-108 122-169 (251)
143 KOG4419|consensus 33.1 45 0.00098 33.2 3.4 70 37-108 38-135 (602)
144 KOG0376|consensus 33.0 29 0.00062 33.5 2.0 70 38-107 210-286 (476)
145 cd02067 B12-binding B12 bindin 30.0 1.3E+02 0.0029 22.7 5.1 45 60-106 47-92 (119)
146 TIGR01768 GGGP-family geranylg 29.0 1.2E+02 0.0026 26.4 5.1 44 61-107 25-68 (223)
147 PRK04169 geranylgeranylglycery 27.6 1.3E+02 0.0028 26.3 5.0 44 61-107 30-73 (232)
148 TIGR01769 GGGP geranylgeranylg 27.5 1.4E+02 0.0031 25.6 5.2 44 62-107 23-66 (205)
149 COG3897 Predicted methyltransf 25.7 55 0.0012 28.1 2.3 39 63-104 142-180 (218)
150 PRK01395 V-type ATP synthase s 25.5 78 0.0017 24.0 2.9 39 62-106 44-83 (104)
151 PF00853 Runt: Runt domain; I 25.1 1E+02 0.0022 24.2 3.4 20 158-177 74-93 (135)
152 cd04101 RabL4 RabL4 (Rab-like4 23.5 69 0.0015 25.2 2.5 60 45-105 54-117 (164)
153 COG1646 Predicted phosphate-bi 23.4 1.7E+02 0.0037 25.7 4.8 45 61-107 39-83 (240)
154 PF00071 Ras: Ras family; Int 23.4 31 0.00066 27.3 0.3 45 61-105 69-114 (162)
155 PRK13992 minC septum formation 22.7 1.7E+02 0.0036 25.1 4.8 48 244-291 116-165 (205)
156 cd04176 Rap2 Rap2 subgroup. T 22.3 87 0.0019 24.7 2.8 61 44-105 50-116 (163)
157 COG1911 RPL30 Ribosomal protei 22.0 2E+02 0.0044 21.6 4.3 41 60-105 32-72 (100)
158 PRK00513 minC septum formation 21.2 1.7E+02 0.0037 25.1 4.6 50 242-291 119-170 (214)
159 TIGR01222 minC septum site-det 20.8 2.1E+02 0.0046 24.5 5.1 49 243-291 130-180 (217)
160 cd02812 PcrB_like PcrB_like pr 20.2 1.7E+02 0.0036 25.5 4.2 43 62-107 24-67 (219)
No 1
>KOG3947|consensus
Probab=100.00 E-value=4.8e-38 Score=270.42 Aligned_cols=283 Identities=51% Similarity=0.926 Sum_probs=235.6
Q ss_pred CcccCCCCCCChhHHHHhhccceeeeeeecCCC--CCCCCCCceEEEEEccCCCCCccccccCCCCcEEEEcCCCCCCCC
Q psy12823 1 MSIPIHPLTQNPTAAWKELSGSQKVIKINVQPP--KTQVDPKKVRVVCMSDTHSLTPHIRFNIPDGDIFIHAGDFTRCGG 78 (295)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~mrI~~iSDlH~~~~~l~~~~~~~D~viiaGDl~~~g~ 78 (295)
++|++||+.+|||.+|+++.++|.+.+-++-++ ..|......|++.|||+|.....+. ..+..|+++.+||+++.|.
T Consensus 19 ~~i~vd~~ssnpt~a~~~~~~~q~~~kp~vkpi~~~ap~~~~~~r~VcisdtH~~~~~i~-~~p~gDvlihagdfT~~g~ 97 (305)
T KOG3947|consen 19 LIIEVDEYSSNPTQAFTFYNKNQRRFKPPVKPIRLDAPVGPGYARFVCISDTHELTFDIN-DIPDGDVLIHAGDFTNLGL 97 (305)
T ss_pred eeEeccCcCCChHHHHHHHHHhcCcccCCCCCcCCCCCCCCCceEEEEecCcccccCccc-cCCCCceEEeccCCccccC
Confidence 468999999999999999999999999877565 7778888999999999999877664 5789999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCe
Q psy12823 79 EEEVTEFNTWIGNLPHKHKLVIAGNHELSFDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNC 158 (295)
Q Consensus 79 ~~e~~~~~~~L~~l~~~pv~~V~GNHD~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 158 (295)
.++...+.+++.+++.+..++|.|||+++++..+...+.+ .+-..+ .++.+...+ +...+....++.|+
T Consensus 98 ~~ev~~fn~~~gslph~yKIVIaGNHELtFd~ef~~~~~k--~~~~~~----~~p~~s~l~-----P~a~egv~~lLTN~ 166 (305)
T KOG3947|consen 98 PEEVIKFNEWLGSLPHEYKIVIAGNHELTFDHEFMADLIK--DEQDAY----YFPGVSKLK-----PEAYEGVQSLLTNC 166 (305)
T ss_pred HHHHHhhhHHhccCcceeeEEEeeccceeecccccchhhc--ccccee----cCccccccC-----ccccccccchhcee
Confidence 9999999999999998788999999999988665443221 000000 011111111 00011122356799
Q ss_pred EEccCCcEEEcceEEEeecCCCCCCCCCcccCchhhhhhhccCCCCCccEEEecCCCCCCCCCCc--CCCccCcHHHHHH
Q psy12823 159 TYLQDEERILYGIKFYGTPWQPEFCKWAFNVPRGEACLSKWQDIPADTDVLISHTPPIGHGDLCC--TGLRAGCVELLTT 236 (295)
Q Consensus 159 ~~L~~~~~~i~gv~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlvtH~pp~~~~D~~~--~~~~~g~~~l~~~ 236 (295)
.||.++.+++.|++|+|++|++.+.+|+|.....+.+++.|+++|++.++|+||.||.+..|... .+.+.||.++...
T Consensus 167 iYLqD~~vtv~G~~Iygspw~p~~~g~~f~l~rg~~~ld~W~~ip~~iDvL~tHtPPlG~gd~~~~~~gqr~GC~ell~t 246 (305)
T KOG3947|consen 167 IYLQDSEVTVRGVRIYGSPWTPLLPGWAFNLPRGQSLLDKWNQIPGGIDVLITHTPPLGHGDLVPVFSGQRNGCVELLNT 246 (305)
T ss_pred EEEecCcEEEEEEEEecCCCCcccCchhhhhhhhHhhhHHHhcCccccceeccCCCCCCcchhcccccCcccCHHHHHHh
Confidence 99999999999999999999988878999888888888899999999999999999999877643 5788999999999
Q ss_pred HHhhCCCcEEEeccccCCCCeeecCcEEEEeCCcCCCCCCCCCCCEEEEecCCCCCCCC
Q psy12823 237 VQQRVKPKYHVFGHVHEGYGITSDGRIIFINASTCDLNYLPTNPPIVFDIALPPGVTKD 295 (295)
Q Consensus 237 l~~~~~~~~~l~GH~H~~~~~~~~g~~~~vn~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (295)
++...++++.++||+|..+++..+|.+.++|++.|..++++.++|.++++..++|-+|+
T Consensus 247 Ve~rvqpk~hVfGhvhe~~Gvta~G~t~fina~~C~~~~~~t~~pilfdip~~~~t~~~ 305 (305)
T KOG3947|consen 247 VERRVQPKYHVFGHVHEGHGVTADGYTTFINAELCNINLRPTNKPILFDIPKPPGTEKS 305 (305)
T ss_pred HhhccccceEEeeeeecCceeeecCccccccHHHhhhccccCCCCeEEeCCCCCCcCCC
Confidence 97678999999999999999999999999999999999999999999999999998875
No 2
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.95 E-value=9.5e-27 Score=201.93 Aligned_cols=190 Identities=13% Similarity=0.081 Sum_probs=134.0
Q ss_pred CceEEEEEccCCCCCcccc-----ccCCCCcEEEEcCCCCCCC-CHHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCC
Q psy12823 40 KKVRVVCMSDTHSLTPHIR-----FNIPDGDIFIHAGDFTRCG-GEEEVTEFNTWIGNLPHKHKLVIAGNHELSFDPTFT 113 (295)
Q Consensus 40 ~~mrI~~iSDlH~~~~~l~-----~~~~~~D~viiaGDl~~~g-~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~~~~~~~ 113 (295)
..|||+++||+|.+...++ .+..++|+||++||+++.+ ..+++..+++.|.++. .|+++|+||||... .
T Consensus 3 ~~~kIl~iSDiHgn~~~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l~-~pv~~V~GNhD~~v-~--- 77 (224)
T cd07388 3 TVRYVLATSNPKGDLEALEKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGEAH-LPTFYVPGPQDAPL-W--- 77 (224)
T ss_pred ceeEEEEEEecCCCHHHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcC-CceEEEcCCCChHH-H---
Confidence 5799999999999876552 2346899999999999998 5788888888888876 49999999999521 0
Q ss_pred CCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhh--hccCCeEEccCCcEEEcc-eEEEeecCCCCCCCCCcccC
Q psy12823 114 HPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMR--DRLTNCTYLQDEERILYG-IKFYGTPWQPEFCKWAFNVP 190 (295)
Q Consensus 114 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~~~~~i~g-v~i~G~~~~~~~~~~~~~~~ 190 (295)
+.++ +.+. ....++..|+++.+.+.| ++|+|.+.++... ..+.+.
T Consensus 78 --------------------------~~l~-----~~~~~~~~~p~~~~lh~~~~~~~g~~~~~GlGGs~~~~-~e~sE~ 125 (224)
T cd07388 78 --------------------------EYLR-----EAYNAELVHPEIRNVHETFAFWRGPYLVAGVGGEIADE-GEPEEH 125 (224)
T ss_pred --------------------------HHHH-----HHhcccccCccceecCCCeEEecCCeEEEEecCCcCCC-CCcCHH
Confidence 0111 0010 001234567777888866 8999988654221 122211
Q ss_pred ch--------hhhhhhccCCCCCccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCCCcEEEeccccCCCCeeecCc
Q psy12823 191 RG--------EACLSKWQDIPADTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGITSDGR 262 (295)
Q Consensus 191 ~~--------~~~~~~~~~~~~~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~~~~~l~GH~H~~~~~~~~g~ 262 (295)
+. +..++.+.....+.+||+||+||++.. ..+.||..+.+++ ++++|++++|||+| ...+..|.
T Consensus 126 e~~~~~~~~~~~~l~~~~~~~~~~~VLv~H~PP~g~g-----~~h~GS~alr~~I-~~~~P~l~i~GHih--~~~~~~g~ 197 (224)
T cd07388 126 EALRYPAWVAEYRLKALWELKDYRKVFLFHTPPYHKG-----LNEQGSHEVAHLI-KTHNPLVVLVGGKG--QKHELLGA 197 (224)
T ss_pred HHhhhhhhHHHHHHHHHHhCCCCCeEEEECCCCCCCC-----CCccCHHHHHHHH-HHhCCCEEEEcCCc--eeEEEeCC
Confidence 10 112222323345689999999999762 1379999999999 69999999999999 44467899
Q ss_pred EEEEeCCcCCCC
Q psy12823 263 IIFINASTCDLN 274 (295)
Q Consensus 263 ~~~vn~g~~~~~ 274 (295)
|++||||....+
T Consensus 198 t~vvNpg~~~~g 209 (224)
T cd07388 198 SWVVVPGDLSEG 209 (224)
T ss_pred EEEECCCcccCC
Confidence 999999997554
No 3
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.95 E-value=2e-26 Score=194.71 Aligned_cols=181 Identities=20% Similarity=0.313 Sum_probs=126.9
Q ss_pred EEEEccCCCCCcccc---ccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCCCCCCCC
Q psy12823 44 VVCMSDTHSLTPHIR---FNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELSFDPTFTHPLSSCR 120 (295)
Q Consensus 44 I~~iSDlH~~~~~l~---~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~~~~~~~~~~~~~~ 120 (295)
|+++||+|++...+. .+..++|+||++||+++.+..+++..+ +.|++++ .|+++|+||||......
T Consensus 1 i~~~sD~H~~~~~~~~~~~~~~~~D~vv~~GDl~~~~~~~~~~~~-~~l~~~~-~p~~~v~GNHD~~~~~~--------- 69 (188)
T cd07392 1 ILAISDIHGDVEKLEAIILKAEEADAVIVAGDITNFGGKEAAVEI-NLLLAIG-VPVLAVPGNCDTPEILG--------- 69 (188)
T ss_pred CEEEEecCCCHHHHHHHHhhccCCCEEEECCCccCcCCHHHHHHH-HHHHhcC-CCEEEEcCCCCCHHHHH---------
Confidence 689999999877653 245689999999999999887776655 8888776 48999999999631000
Q ss_pred CCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEEEcceEEEeecCCCCC--C-CCCcccCchhhhhh
Q psy12823 121 SPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYGIKFYGTPWQPEF--C-KWAFNVPRGEACLS 197 (295)
Q Consensus 121 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~i~gv~i~G~~~~~~~--~-~~~~~~~~~~~~~~ 197 (295)
. ...+...++++.+++++++|+|....... . ...+...+.+++ +
T Consensus 70 -----------------------------~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~ 116 (188)
T cd07392 70 -----------------------------L---LTSAGLNLHGKVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSD-G 116 (188)
T ss_pred -----------------------------h---hhcCcEecCCCEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHh-h
Confidence 0 01234456677788889999997632211 0 112221122221 1
Q ss_pred hccCCCCCccEEEecCCCCC-CCCCCcCCCccCcHHHHHHHHhhCCCcEEEeccccCCCCeeecCcEEEEeCC
Q psy12823 198 KWQDIPADTDVLISHTPPIG-HGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGITSDGRIIFINAS 269 (295)
Q Consensus 198 ~~~~~~~~~~IlvtH~pp~~-~~D~~~~~~~~g~~~l~~~l~~~~~~~~~l~GH~H~~~~~~~~g~~~~vn~g 269 (295)
.+...+++++|++||+||.+ ..|......+.|+.++.+++ ++++|++++|||+|.+......|+++++|+|
T Consensus 117 ~l~~~~~~~~ilv~H~pp~~~~~d~~~~~~~~g~~~l~~li-~~~~~~~~l~GH~H~~~~~~~~~~~~~~n~G 188 (188)
T cd07392 117 RLNNLLAKNLILVTHAPPYGTAVDRVSGGFHVGSKAIRKFI-EERQPLLCICGHIHESRGVDKIGNTLVVNPG 188 (188)
T ss_pred hhhccCCCCeEEEECCCCcCCcccccCCCCccCCHHHHHHH-HHhCCcEEEEeccccccceeeeCCeEEecCC
Confidence 12233457899999999987 35544333357889999988 5889999999999999876678999999997
No 4
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.93 E-value=7.2e-25 Score=185.76 Aligned_cols=191 Identities=21% Similarity=0.287 Sum_probs=134.6
Q ss_pred CceEEEEEccCCCCCcccc-----ccCCCCcEEEEcCCCC--CCCCHHHHHHH--HHHHhcCCCCcEEEEcCCCCCCCCC
Q psy12823 40 KKVRVVCMSDTHSLTPHIR-----FNIPDGDIFIHAGDFT--RCGGEEEVTEF--NTWIGNLPHKHKLVIAGNHELSFDP 110 (295)
Q Consensus 40 ~~mrI~~iSDlH~~~~~l~-----~~~~~~D~viiaGDl~--~~g~~~e~~~~--~~~L~~l~~~pv~~V~GNHD~~~~~ 110 (295)
.+|||+++||+|.....++ ....++|+++++|||+ +.+......+. ++.+++.. .||++||||.|.....
T Consensus 2 ~~mkil~vtDlHg~~~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l~~~~-~~v~avpGNcD~~~v~ 80 (226)
T COG2129 2 KKMKILAVTDLHGSEDSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEVAEELNKLEALKELG-IPVLAVPGNCDPPEVI 80 (226)
T ss_pred CcceEEEEeccccchHHHHHHHHHHhhccCCEEEEecceehhhcCchHHHHhhhHHHHHHhcC-CeEEEEcCCCChHHHH
Confidence 5799999999999876541 2334899999999999 88876665554 56777665 4999999999963110
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEEEcceEEEeecCC---CCCCCCCc
Q psy12823 111 TFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYGIKFYGTPWQ---PEFCKWAF 187 (295)
Q Consensus 111 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~i~gv~i~G~~~~---~~~~~~~~ 187 (295)
..+ ......+++++++++++.|.|...+ |....+.|
T Consensus 81 -----------------------------~~l------------~~~~~~v~~~v~~i~~~~~~G~Ggsn~tp~nt~~e~ 119 (226)
T COG2129 81 -----------------------------DVL------------KNAGVNVHGRVVEIGGYGFVGFGGSNPTPFNTPREF 119 (226)
T ss_pred -----------------------------HHH------------HhcccccccceEEecCcEEEEecccCCCCCCCcccc
Confidence 011 0112334568888999999885532 21112344
Q ss_pred ccCchhhhhh-hccCCCCCccEEEecCCCCCCCCCCcCC-CccCcHHHHHHHHhhCCCcEEEeccccCCCCeeecCcEEE
Q psy12823 188 NVPRGEACLS-KWQDIPADTDVLISHTPPIGHGDLCCTG-LRAGCVELLTTVQQRVKPKYHVFGHVHEGYGITSDGRIIF 265 (295)
Q Consensus 188 ~~~~~~~~~~-~~~~~~~~~~IlvtH~pp~~~~D~~~~~-~~~g~~~l~~~l~~~~~~~~~l~GH~H~~~~~~~~g~~~~ 265 (295)
.+..+....+ .+..+.+...|+++|+||++..+....+ .|.||.++++++ ++.||.+.+|||+|++.+....|.|++
T Consensus 120 ~E~~I~s~l~~~v~~~~~~~~Il~~HaPP~gt~~d~~~g~~hvGS~~vr~~i-eefqP~l~i~GHIHEs~G~d~iG~Tiv 198 (226)
T COG2129 120 SEDEIYSKLKSLVKKADNPVNILLTHAPPYGTLLDTPSGYVHVGSKAVRKLI-EEFQPLLGLHGHIHESRGIDKIGNTIV 198 (226)
T ss_pred CHHHHHHHHHHHHhcccCcceEEEecCCCCCccccCCCCccccchHHHHHHH-HHhCCceEEEeeecccccccccCCeEE
Confidence 3332222222 2222222223999999999986555455 799999999999 699999999999999999999999999
Q ss_pred EeCCcCCC
Q psy12823 266 INASTCDL 273 (295)
Q Consensus 266 vn~g~~~~ 273 (295)
||||..+.
T Consensus 199 VNPG~~~~ 206 (226)
T COG2129 199 VNPGPLGE 206 (226)
T ss_pred ECCCCccC
Confidence 99999643
No 5
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.89 E-value=2.4e-22 Score=161.78 Aligned_cols=131 Identities=59% Similarity=1.090 Sum_probs=106.1
Q ss_pred EEEEEccCCCCCccccccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCCCCCCCCCC
Q psy12823 43 RVVCMSDTHSLTPHIRFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELSFDPTFTHPLSSCRSP 122 (295)
Q Consensus 43 rI~~iSDlH~~~~~l~~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~~~~~~~~~~~~~~~~ 122 (295)
||+++||+|..... .+..++|+|+++||+++.+...+++.+.+++++++.+++++|+||||.+.
T Consensus 1 ~i~~isD~H~~~~~--~~~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~~~~~~~v~GNHD~~~-------------- 64 (135)
T cd07379 1 RFVCISDTHSRHRT--ISIPDGDVLIHAGDLTERGTLEELQKFLDWLKSLPHPHKIVIAGNHDLTL-------------- 64 (135)
T ss_pred CEEEEeCCCCCCCc--CcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhCCCCeEEEEECCCCCcC--------------
Confidence 58999999998662 34568999999999999888888888899999886534689999999530
Q ss_pred CccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEEEcceEEEeecCCCCCCCCCcccCchhhhhhhccCC
Q psy12823 123 SRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYGIKFYGTPWQPEFCKWAFNVPRGEACLSKWQDI 202 (295)
Q Consensus 123 ~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~i~gv~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (295)
.
T Consensus 65 ----------------------------------~--------------------------------------------- 65 (135)
T cd07379 65 ----------------------------------D--------------------------------------------- 65 (135)
T ss_pred ----------------------------------C---------------------------------------------
Confidence 0
Q ss_pred CCCccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCCCcEEEeccccCCCCee----ecCcEEEEeCC
Q psy12823 203 PADTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGIT----SDGRIIFINAS 269 (295)
Q Consensus 203 ~~~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~~~~~l~GH~H~~~~~~----~~g~~~~vn~g 269 (295)
.++.+|+++|.||.+..+......+.|+.++.+.+ ++.++++++|||+|.++... ..++|+++|+|
T Consensus 66 ~~~~~ilv~H~~p~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~i~GH~H~~~~~~~~~~~~~~t~~in~~ 135 (135)
T cd07379 66 PEDTDILVTHGPPYGHLDLVSSGQRVGCEELLNRV-QRVRPKLHVFGHIHEGYGAERVLDTDGETLFVNAS 135 (135)
T ss_pred CCCCEEEEECCCCCcCccccccCcccCCHHHHHHH-HHHCCcEEEEcCcCCcCceeEecccCCCEEEEeCC
Confidence 03467999999998765553333568888999888 58899999999999998776 77999999986
No 6
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.88 E-value=4.6e-22 Score=178.43 Aligned_cols=201 Identities=15% Similarity=0.184 Sum_probs=127.0
Q ss_pred eeeeeecCCCCCCCCCCceEEEEEccCCCCCc----cc-----cccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCC
Q psy12823 24 KVIKINVQPPKTQVDPKKVRVVCMSDTHSLTP----HI-----RFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPH 94 (295)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~mrI~~iSDlH~~~~----~l-----~~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~ 94 (295)
++.+.++. ..|+...+|||+++||+|.... .+ ..+..+||+|+++||+++.+...+...+.+.|+++..
T Consensus 34 ~v~~~~i~--~~~~~~~~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~ 111 (271)
T PRK11340 34 ELIRHRLA--FFKDNAAPFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDMPLNFSAFSDVLSPLAE 111 (271)
T ss_pred EEEEEEcc--CCCCCCCCcEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCCccccHHHHHHHHHHHhh
Confidence 44555543 1555667899999999998632 11 1245699999999999984433333344455555431
Q ss_pred -CcEEEEcCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEEEc----
Q psy12823 95 -KHKLVIAGNHELSFDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILY---- 169 (295)
Q Consensus 95 -~pv~~V~GNHD~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~i~---- 169 (295)
.|+|+|+||||++..... .+.+++ ..+ ..++.+|.++.+.+.
T Consensus 112 ~~pv~~V~GNHD~~~~~~~--------------------------~~~~~~------~l~-~~gi~lL~n~~~~i~~~~~ 158 (271)
T PRK11340 112 CAPTFACFGNHDRPVGTEK--------------------------NHLIGE------TLK-SAGITVLFNQATVIATPNR 158 (271)
T ss_pred cCCEEEecCCCCcccCccc--------------------------hHHHHH------HHH-hcCcEEeeCCeEEEeeCCc
Confidence 389999999997531110 001111 111 247889988887763
Q ss_pred ceEEEeecCCCCCCCCCcccCchhhhhhhccCCCCCccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCCCcEEEec
Q psy12823 170 GIKFYGTPWQPEFCKWAFNVPRGEACLSKWQDIPADTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFG 249 (295)
Q Consensus 170 gv~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~~~~~l~G 249 (295)
.+.++|.... |.... . ..+.+. .+.+.|+++|.|-. .+ .+ .+.++|+++||
T Consensus 159 ~i~i~G~~d~-----~~~~~-~---~~~~~~--~~~~~IlL~H~P~~--~~---------------~~-~~~~~dL~lsG 209 (271)
T PRK11340 159 QFELVGTGDL-----WAGQC-K---PPPASE--ANLPRLVLAHNPDS--KE---------------VM-RDEPWDLMLCG 209 (271)
T ss_pred EEEEEEecch-----hccCC-C---hhHhcC--CCCCeEEEEcCCCh--hH---------------hh-ccCCCCEEEec
Confidence 4788887521 11000 0 111111 25689999999943 11 12 24578999999
Q ss_pred cccCCCCe---------------------eecCcEEEEeCCcCCC-CCCCCCCCEEEEecC
Q psy12823 250 HVHEGYGI---------------------TSDGRIIFINASTCDL-NYLPTNPPIVFDIAL 288 (295)
Q Consensus 250 H~H~~~~~---------------------~~~g~~~~vn~g~~~~-~~~~~~~~~~~~~~~ 288 (295)
|+|.++.. ...+.+++||.|.+.. ++|++++|+|+.++|
T Consensus 210 HTHGGQi~lP~~~~~~~~~~~~~~~~G~~~~~~~~l~Vs~G~G~~~p~R~~~~pEi~~i~l 270 (271)
T PRK11340 210 HTHGGQLRVPLVGEPFAPVEDKRYVAGLNAFGERQIYTTRGVGSLYGLRLNCRPEVTMLEL 270 (271)
T ss_pred cccCCeEEccccCccccccccCcccCCcEEeCCcEEEEeCCccCCcCCcccCCCeEEEEEe
Confidence 99986631 1345679999999865 699999999988876
No 7
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.88 E-value=1.5e-21 Score=175.51 Aligned_cols=196 Identities=19% Similarity=0.227 Sum_probs=121.5
Q ss_pred CCCCCCceEEEEEccCCCCCcc------------c----c-c--cCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCC
Q psy12823 35 TQVDPKKVRVVCMSDTHSLTPH------------I----R-F--NIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHK 95 (295)
Q Consensus 35 ~~~~~~~mrI~~iSDlH~~~~~------------l----~-~--~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~ 95 (295)
.+.+..+|||++|||+|+.... + + . ...++|+||++||+++.+..++++.+.+.|++++ .
T Consensus 8 ~~~~~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~~~~~~~~~~~l~~l~-~ 86 (275)
T PRK11148 8 PLAGEARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHSSEAYQHFAEGIAPLR-K 86 (275)
T ss_pred ccCCCCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCCHHHHHHHHHHHhhcC-C
Confidence 4456678999999999974310 1 1 1 1247999999999999998889999999999987 4
Q ss_pred cEEEEcCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEEEcceEEEe
Q psy12823 96 HKLVIAGNHELSFDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYGIKFYG 175 (295)
Q Consensus 96 pv~~V~GNHD~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~i~gv~i~G 175 (295)
|+++|+||||... .+. +.+. ...+ ... .....-+++++++
T Consensus 87 Pv~~v~GNHD~~~--~~~--------------------------~~~~----~~~~---~~~-----~~~~~~~~~~~i~ 126 (275)
T PRK11148 87 PCVWLPGNHDFQP--AMY--------------------------SALQ----DAGI---SPA-----KHVLIGEHWQILL 126 (275)
T ss_pred cEEEeCCCCCChH--HHH--------------------------HHHh----hcCC---Ccc-----ceEEecCCEEEEE
Confidence 9999999999731 100 0000 0000 000 0011112355666
Q ss_pred ecCCC-CCCCCCcccCchhhhhhhccCCCCCccEEEecCCCCCCCCC-CcCCCccCcHHHHHHHHhhC-CCcEEEecccc
Q psy12823 176 TPWQP-EFCKWAFNVPRGEACLSKWQDIPADTDVLISHTPPIGHGDL-CCTGLRAGCVELLTTVQQRV-KPKYHVFGHVH 252 (295)
Q Consensus 176 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~IlvtH~pp~~~~D~-~~~~~~~g~~~l~~~l~~~~-~~~~~l~GH~H 252 (295)
..... ..........+.+++.+.+++.+++..|+++||+|...... .......+..++.+++ +++ ++++++|||+|
T Consensus 127 Lds~~~g~~~G~l~~~ql~wL~~~L~~~~~~~~vv~~hH~P~~~~~~~~d~~~l~n~~~l~~ll-~~~~~v~~vl~GH~H 205 (275)
T PRK11148 127 LDSQVFGVPHGELSEYQLEWLERKLADAPERHTLVLLHHHPLPAGCAWLDQHSLRNAHELAEVL-AKFPNVKAILCGHIH 205 (275)
T ss_pred ecCCCCCCcCCEeCHHHHHHHHHHHhhCCCCCeEEEEcCCCCCCCcchhhccCCCCHHHHHHHH-hcCCCceEEEecccC
Confidence 54211 00011122334455666666556667788888887643111 0011224557888888 465 89999999999
Q ss_pred CCCCeeecCcEEEEeCCcCC
Q psy12823 253 EGYGITSDGRIIFINASTCD 272 (295)
Q Consensus 253 ~~~~~~~~g~~~~vn~g~~~ 272 (295)
........|...++++++|.
T Consensus 206 ~~~~~~~~gi~~~~~ps~~~ 225 (275)
T PRK11148 206 QELDLDWNGRRLLATPSTCV 225 (275)
T ss_pred hHHhceECCEEEEEcCCCcC
Confidence 98876666777778888874
No 8
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.87 E-value=6.6e-22 Score=174.34 Aligned_cols=189 Identities=18% Similarity=0.226 Sum_probs=115.8
Q ss_pred EEEEEccCCCCCcc------c----c-ccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCC
Q psy12823 43 RVVCMSDTHSLTPH------I----R-FNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELSFDPT 111 (295)
Q Consensus 43 rI~~iSDlH~~~~~------l----~-~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~~~~~ 111 (295)
||+++||+|++... + + .+..++|+||++||+++.. .+...+++.+.++...|+++|+||||.+....
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~--~~~~~~~~~l~~~~~~pv~~v~GNHD~~~~~~ 78 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISNDF--QRSLPFIEKLQELKGIKVTFNAGNHDMLKDLT 78 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccch--hhHHHHHHHHHHhcCCcEEEECCCCCCCCCCC
Confidence 69999999976422 1 1 2346899999999999864 23335556666543359999999999752111
Q ss_pred CCCCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEEE--cceEEEeec-CCCC-CCC---
Q psy12823 112 FTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERIL--YGIKFYGTP-WQPE-FCK--- 184 (295)
Q Consensus 112 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~i--~gv~i~G~~-~~~~-~~~--- 184 (295)
. +.+ .+.. +..+|+++...+ ++++|+|.+ |+.. ++.
T Consensus 79 ~---------------------------~~~---------~~~~-~~~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~ 121 (239)
T TIGR03729 79 Y---------------------------EEI---------ESND-SPLYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKT 121 (239)
T ss_pred H---------------------------HHH---------Hhcc-chhhhcccccccCCCceEEEeeccceecccccccC
Confidence 0 001 1001 334566666666 678999977 3220 000
Q ss_pred ------------------CCcccC-----chhhhhhhccCCCCCccEEEecCCCCCC-C----CC-CcC--CCccCcHHH
Q psy12823 185 ------------------WAFNVP-----RGEACLSKWQDIPADTDVLISHTPPIGH-G----DL-CCT--GLRAGCVEL 233 (295)
Q Consensus 185 ------------------~~~~~~-----~~~~~~~~~~~~~~~~~IlvtH~pp~~~-~----D~-~~~--~~~~g~~~l 233 (295)
+..... +.+++.+.+++.++++.|++||+||... . +. .+. ....|+.++
T Consensus 122 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l 201 (239)
T TIGR03729 122 SKEILRWKKSFWFDRRIKRPMSDPERTAIVLKQLKKQLNQLDNKQVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHF 201 (239)
T ss_pred HHHHHHhhhcEEeecccCCCCChHHHHHHHHHHHHHHHHhcCCCCEEEEEcccchHHHhcCCCCCcchhhhhhccChHHH
Confidence 000000 0112223344445678999999999642 1 11 111 124577889
Q ss_pred HHHHHhhCCCcEEEeccccCCCCeeecCcEEEEeCCcC
Q psy12823 234 LTTVQQRVKPKYHVFGHVHEGYGITSDGRIIFINASTC 271 (295)
Q Consensus 234 ~~~l~~~~~~~~~l~GH~H~~~~~~~~g~~~~vn~g~~ 271 (295)
.+++ +++++++|+|||+|.+......+++.++|.+.+
T Consensus 202 ~~li-~~~~v~~~i~GH~H~~~~~~~i~~~~~~~~~~g 238 (239)
T TIGR03729 202 GQLL-VKYEIKDVIFGHLHRRFGPLTIGGTTYHNRPLG 238 (239)
T ss_pred HHHH-HHhCCCEEEECCccCCCCCEEECCEEEEecCCC
Confidence 9888 477999999999999985445688888887754
No 9
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.87 E-value=2.2e-21 Score=170.58 Aligned_cols=192 Identities=16% Similarity=0.153 Sum_probs=119.1
Q ss_pred EEEEEccCCCCCcc------------c----c-ccC--CCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCC
Q psy12823 43 RVVCMSDTHSLTPH------------I----R-FNI--PDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGN 103 (295)
Q Consensus 43 rI~~iSDlH~~~~~------------l----~-~~~--~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GN 103 (295)
||+++||+|.+... + . .+. .++|+||++||+++.+..++++.+.+.++++. .|+++|+||
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~~~-~p~~~v~GN 79 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELLAALP-IPVYLLPGN 79 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHHhhcC-CCEEEeCCC
Confidence 69999999997531 1 1 122 48999999999999988888888999998886 499999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEEEcceEEEeecCCCCCC
Q psy12823 104 HELSFDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYGIKFYGTPWQPEFC 183 (295)
Q Consensus 104 HD~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~i~gv~i~G~~~~~~~~ 183 (295)
||... .+. . .++ .. ..... ....++++++++|++++......
T Consensus 80 HD~~~--~~~-~-------~~~------------------------~~---~~~~~-~~~~~~~~~~~~~i~lds~~~~~ 121 (240)
T cd07402 80 HDDRA--AMR-A-------VFP------------------------EL---PPAPG-FVQYVVDLGGWRLILLDSSVPGQ 121 (240)
T ss_pred CCCHH--HHH-H-------hhc------------------------cc---ccccc-ccceeEecCCEEEEEEeCCCCCC
Confidence 99731 000 0 000 00 00000 01224566788999876332110
Q ss_pred -CCCcccCchhhhhhhccCCCCCccEEEecCCCCCCCCC-CcCCCccCcHHHHHHHHhhC-CCcEEEeccccCCCCeeec
Q psy12823 184 -KWAFNVPRGEACLSKWQDIPADTDVLISHTPPIGHGDL-CCTGLRAGCVELLTTVQQRV-KPKYHVFGHVHEGYGITSD 260 (295)
Q Consensus 184 -~~~~~~~~~~~~~~~~~~~~~~~~IlvtH~pp~~~~D~-~~~~~~~g~~~l~~~l~~~~-~~~~~l~GH~H~~~~~~~~ 260 (295)
.......+.+++.+.+.+.+.++.|+++|+||...... .......++.++.+++ .++ ++++++|||+|........
T Consensus 122 ~~~~~~~~ql~wL~~~L~~~~~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l-~~~~~v~~v~~GH~H~~~~~~~~ 200 (240)
T cd07402 122 HGGELCAAQLDWLEAALAEAPDKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVL-ARHPNVRAILCGHVHRPIDGSWG 200 (240)
T ss_pred cCCEECHHHHHHHHHHHHhCCCCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHH-hcCCCeeEEEECCcCchHHeEEC
Confidence 11112223344555555555678899999999754211 1111234567888888 467 8999999999998765554
Q ss_pred CcEEEEeCCcCCCCC
Q psy12823 261 GRIIFINASTCDLNY 275 (295)
Q Consensus 261 g~~~~vn~g~~~~~~ 275 (295)
|. .+++.|+.+.++
T Consensus 201 g~-~~~~~gs~~~~~ 214 (240)
T cd07402 201 GI-PLLTAPSTCHQF 214 (240)
T ss_pred CE-EEEEcCcceeee
Confidence 54 544444443344
No 10
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.87 E-value=2.9e-21 Score=168.12 Aligned_cols=194 Identities=23% Similarity=0.343 Sum_probs=121.5
Q ss_pred eEEEEEccCCCCCccc---cccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCCCCCC
Q psy12823 42 VRVVCMSDTHSLTPHI---RFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELSFDPTFTHPLSS 118 (295)
Q Consensus 42 mrI~~iSDlH~~~~~l---~~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~~~~~~~~~~~~ 118 (295)
+||+++||+|...... ..+..++|+|+++||+++.. .++++.|.+++. |+++|+||||.+.......+
T Consensus 1 ~rIa~isDiHg~~~~~~~~~l~~~~pD~Vl~~GDi~~~~-----~~~~~~l~~l~~-p~~~V~GNHD~~~~~~~~~k--- 71 (238)
T cd07397 1 LRIAIVGDVHGQWDLEDIKALHLLQPDLVLFVGDFGNES-----VQLVRAISSLPL-PKAVILGNHDAWYDATFRKK--- 71 (238)
T ss_pred CEEEEEecCCCCchHHHHHHHhccCCCEEEECCCCCcCh-----HHHHHHHHhCCC-CeEEEcCCCcccccccccch---
Confidence 5899999999876532 12446899999999998632 256677887764 89999999998643211000
Q ss_pred CCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEEEc--ceEEEee-cCCCCCCCCC--------c
Q psy12823 119 CRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILY--GIKFYGT-PWQPEFCKWA--------F 187 (295)
Q Consensus 119 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~i~--gv~i~G~-~~~~~~~~~~--------~ 187 (295)
. +.+.+ .. + ..++..+..+.+++. ++.++|. +|+..-+.|. |
T Consensus 72 ------~--------------~~l~~-----~L-~-~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~f 124 (238)
T cd07397 72 ------G--------------DRVQE-----QL-E-LLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVY 124 (238)
T ss_pred ------H--------------HHHHH-----HH-H-HhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHh
Confidence 0 01111 11 1 123444555666664 5888885 4654222232 1
Q ss_pred ccCchhhh----hhhccC-CCCCccEEEecCCCCCCCCCCcC---------CCccCcHHHHHHHHhhC----CCcEEEec
Q psy12823 188 NVPRGEAC----LSKWQD-IPADTDVLISHTPPIGHGDLCCT---------GLRAGCVELLTTVQQRV----KPKYHVFG 249 (295)
Q Consensus 188 ~~~~~~~~----~~~~~~-~~~~~~IlvtH~pp~~~~D~~~~---------~~~~g~~~l~~~l~~~~----~~~~~l~G 249 (295)
.....++. .+.... .++...|+++|.+|.+..|...+ +...|+++|.+.|. .. +|++++||
T Consensus 125 gi~s~~eA~~~ive~~~~~~~~~~~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~-~~~~~~~~~l~~fG 203 (238)
T cd07397 125 GVISLEESAQRIIAAAKKAPPDLPLILLAHNGPSGLGSDAEDPCGRDWKPPGGDWGDPDLALAIS-QIQQGRQVPLVVFG 203 (238)
T ss_pred CCCCHHHHHHHHHHHhhhcCCCCCeEEEeCcCCcCCCcccccccccccCCcCCCCCCHHHHHHHH-HHhccCCCCEEEeC
Confidence 11111111 122222 24567999999999987644322 56789999987773 33 48999999
Q ss_pred cccCC--CCe-------eecCcEEEEeCCcCC
Q psy12823 250 HVHEG--YGI-------TSDGRIIFINASTCD 272 (295)
Q Consensus 250 H~H~~--~~~-------~~~g~~~~vn~g~~~ 272 (295)
|+|.+ ++. ...++|.|+|++++.
T Consensus 204 H~H~~l~~~~~~r~~~~~~~~gt~y~N~a~~p 235 (238)
T cd07397 204 HMHHRLRRGKGLRNMIAVDREGTVYLNAASVP 235 (238)
T ss_pred CccCcccccccccceeeecCCCeEEEeccccc
Confidence 99998 432 223689999999874
No 11
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.84 E-value=2.5e-20 Score=157.72 Aligned_cols=196 Identities=19% Similarity=0.276 Sum_probs=117.0
Q ss_pred CceEEEEEccCCCCCcccc-----ccCCCCcEEEEcCCCCCCCC-HHHHH--------------------------HHHH
Q psy12823 40 KKVRVVCMSDTHSLTPHIR-----FNIPDGDIFIHAGDFTRCGG-EEEVT--------------------------EFNT 87 (295)
Q Consensus 40 ~~mrI~~iSDlH~~~~~l~-----~~~~~~D~viiaGDl~~~g~-~~e~~--------------------------~~~~ 87 (295)
.+-||+.+||.|.....+. +...++|+|+++||+..... .++|. .+++
T Consensus 4 ~~~kilA~s~~~g~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~ 83 (255)
T PF14582_consen 4 MVRKILAISNFRGDFELLERLVEVIPEKGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDKFFR 83 (255)
T ss_dssp S--EEEEEE--TT-HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHH
T ss_pred cchhheeecCcchHHHHHHHHHhhccccCCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHH
Confidence 3458999999999876541 23348999999999976432 35666 7888
Q ss_pred HHhcCCCCcEEEEcCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEE
Q psy12823 88 WIGNLPHKHKLVIAGNHELSFDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERI 167 (295)
Q Consensus 88 ~L~~l~~~pv~~V~GNHD~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~ 167 (295)
.|..+.. |+++||||||.+. +..++++. +......+++.++.+...
T Consensus 84 ~L~~~~~-p~~~vPG~~Dap~------------------------------~~~lr~a~---~~e~v~p~~~~vH~sf~~ 129 (255)
T PF14582_consen 84 ILGELGV-PVFVVPGNMDAPE------------------------------RFFLREAY---NAEIVTPHIHNVHESFFF 129 (255)
T ss_dssp HHHCC-S-EEEEE--TTS-SH------------------------------HHHHHHHH---HCCCC-TTEEE-CTCEEE
T ss_pred HHHhcCC-cEEEecCCCCchH------------------------------HHHHHHHh---ccceeccceeeeeeeecc
Confidence 8888874 9999999999752 11222221 111124678888888888
Q ss_pred Ecc-eEEEeecCC-CCCC---CCCcccC--chhhhhhhccCCCCCccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhh
Q psy12823 168 LYG-IKFYGTPWQ-PEFC---KWAFNVP--RGEACLSKWQDIPADTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQR 240 (295)
Q Consensus 168 i~g-v~i~G~~~~-~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~ 240 (295)
.+| +.|+|.+.. +... .....++ ..+..++.+..+.+...|+++|.|| |......+.||..+.+++ +.
T Consensus 130 ~~g~y~v~G~GGeI~~~~~~~~~~LrYP~weaey~lk~l~elk~~r~IlLfhtpP----d~~kg~~h~GS~~V~dlI-k~ 204 (255)
T PF14582_consen 130 WKGEYLVAGMGGEITDDQREEEFKLRYPAWEAEYSLKFLRELKDYRKILLFHTPP----DLHKGLIHVGSAAVRDLI-KT 204 (255)
T ss_dssp ETTTEEEEEE-SEEESSS-BCSSS-EEEHHHHHHHHGGGGGCTSSEEEEEESS-B----TBCTCTBTTSBHHHHHHH-HH
T ss_pred cCCcEEEEecCccccCCCccccccccchHHHHHHHHHHHHhcccccEEEEEecCC----ccCCCcccccHHHHHHHH-Hh
Confidence 887 889987632 1000 0111111 1222345666665568899999999 221223689999999999 69
Q ss_pred CCCcEEEeccccCCCCeeecCcEEEEeCCcCCCC
Q psy12823 241 VKPKYHVFGHVHEGYGITSDGRIIFINASTCDLN 274 (295)
Q Consensus 241 ~~~~~~l~GH~H~~~~~~~~g~~~~vn~g~~~~~ 274 (295)
+||++++|||+|...+....|.|++||||+...|
T Consensus 205 ~~P~ivl~Ghihe~~~~e~lG~TlVVNPGsL~~G 238 (255)
T PF14582_consen 205 YNPDIVLCGHIHESHGKESLGKTLVVNPGSLAEG 238 (255)
T ss_dssp H--SEEEE-SSS-EE--EEETTEEEEE--BGGGT
T ss_pred cCCcEEEecccccchhhHHhCCEEEecCcccccC
Confidence 9999999999999998889999999999998653
No 12
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.83 E-value=1.4e-19 Score=158.93 Aligned_cols=187 Identities=19% Similarity=0.292 Sum_probs=113.5
Q ss_pred EEEEccCCCCCc------cc--------c-----c--cCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcC
Q psy12823 44 VVCMSDTHSLTP------HI--------R-----F--NIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAG 102 (295)
Q Consensus 44 I~~iSDlH~~~~------~l--------~-----~--~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~G 102 (295)
|.++||||+... .+ + . ...++|+||++|||++.+..++....+++|++++. |+++|+|
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~~~~~~~l~~l~~l~~-~v~~V~G 79 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKLEEAKLDLAWIDALPG-TKVLLKG 79 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCChHHHHHHHHHHHhCCC-CeEEEeC
Confidence 579999998841 11 0 1 12489999999999987776677777888888765 7999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEEEcceEEEeec-CCCC
Q psy12823 103 NHELSFDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYGIKFYGTP-WQPE 181 (295)
Q Consensus 103 NHD~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~i~gv~i~G~~-~~~~ 181 (295)
|||.+... .+.+++. +. ..++..+.+..+.++++.|+|.. |+..
T Consensus 80 NHD~~~~~----------------------------~~~~~~~-----l~--~~~~~~~~n~~~~~~~i~i~G~~~~~~~ 124 (232)
T cd07393 80 NHDYWWGS----------------------------ASKLRKA-----LE--ESRLALLFNNAYIDDDVAICGTRGWDNP 124 (232)
T ss_pred CccccCCC----------------------------HHHHHHH-----HH--hcCeEEeccCcEEECCEEEEEEEeeCCC
Confidence 99975210 1111111 11 12344454777888899999975 3321
Q ss_pred CCCCC-c--------c----cCchhhhhhhccCCC----CCccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCCCc
Q psy12823 182 FCKWA-F--------N----VPRGEACLSKWQDIP----ADTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPK 244 (295)
Q Consensus 182 ~~~~~-~--------~----~~~~~~~~~~~~~~~----~~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~~~ 244 (295)
...|. + . ..+.+++.+.+...+ +++.|+++|+||.... .+...+.+.+ ++.+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~--------~~~~~~~~~~-~~~~v~ 195 (232)
T cd07393 125 GNPWPPINETLKVEEDEKIFERELERLELSLKAAKKREKEKIKIVMLHYPPANEN--------GDDSPISKLI-EEYGVD 195 (232)
T ss_pred CCccccccccccchhHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCC--------CCHHHHHHHH-HHcCCC
Confidence 11110 0 0 001122223333221 1368999999997431 2334677777 577999
Q ss_pred EEEeccccCCCCee-----ecCcEEEEeCCcCCCCCC
Q psy12823 245 YHVFGHVHEGYGIT-----SDGRIIFINASTCDLNYL 276 (295)
Q Consensus 245 ~~l~GH~H~~~~~~-----~~g~~~~vn~g~~~~~~~ 276 (295)
+++|||+|...... ..|.+.+++|++| .+|.
T Consensus 196 ~vl~GH~H~~~~~~~~~~~~~gi~~~~~~~~~-~~~~ 231 (232)
T cd07393 196 ICVYGHLHGVGRDRAINGERGGIRYQLVSADY-LNFQ 231 (232)
T ss_pred EEEECCCCCCcccccccceECCEEEEEEcchh-cCcc
Confidence 99999999886422 4455555555554 4554
No 13
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.83 E-value=1.6e-19 Score=150.26 Aligned_cols=152 Identities=20% Similarity=0.244 Sum_probs=93.2
Q ss_pred EEEEccCCCCCcccc------ccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCCCCC
Q psy12823 44 VVCMSDTHSLTPHIR------FNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELSFDPTFTHPLS 117 (295)
Q Consensus 44 I~~iSDlH~~~~~l~------~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~~~~~~~~~~~ 117 (295)
|+++||+|++..... ....++|+|+++||+++.+...+... ...+.... .|+++|+||||.+
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~~~~~~~~-~~~~~~~~-~~v~~v~GNHD~~---------- 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLTDAPRFAP-LLLALKGF-EPVIYVPGNHEFY---------- 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCCEEEECCCCCCCcchHHHHH-HHHhhcCC-ccEEEeCCCcceE----------
Confidence 579999999875431 23468999999999999776544332 12222222 4899999999963
Q ss_pred CCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEEEcceEEEeec-CCCCCCCCCcccCchhhhh
Q psy12823 118 SCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYGIKFYGTP-WQPEFCKWAFNVPRGEACL 196 (295)
Q Consensus 118 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~i~gv~i~G~~-~~~~~~~~~~~~~~~~~~~ 196 (295)
++|.|.+ |+. +.+ ...+.+.
T Consensus 69 -----------------------------------------------------~~~~G~~~w~~----~~~--~~~~~~~ 89 (166)
T cd07404 69 -----------------------------------------------------VRIIGTTLWSD----ISL--FGEAAAR 89 (166)
T ss_pred -----------------------------------------------------EEEEeeecccc----cCc--cchHHHH
Confidence 2344544 432 110 0111222
Q ss_pred hhccCCCCCccEEEecCCCCCCC-CCCcC-CCc--cCcHHHHHHHHhhCCCcEEEeccccCCCCeeecCcEEEEeC
Q psy12823 197 SKWQDIPADTDVLISHTPPIGHG-DLCCT-GLR--AGCVELLTTVQQRVKPKYHVFGHVHEGYGITSDGRIIFINA 268 (295)
Q Consensus 197 ~~~~~~~~~~~IlvtH~pp~~~~-D~~~~-~~~--~g~~~l~~~l~~~~~~~~~l~GH~H~~~~~~~~g~~~~vn~ 268 (295)
..+... .++.|++||+||.... +.... +.. .++..+.+.+ ++.++++|+|||+|........|.++++||
T Consensus 90 ~~~~d~-~~~~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~v~~~i~GH~H~~~~~~~~g~~~~~np 163 (166)
T cd07404 90 MRMNDF-RGKTVVVTHHAPSPLSLAPQYGDSLVNAAFAVDLDDLI-LADPIDLWIHGHTHFNFDYRIGGTRVLSNQ 163 (166)
T ss_pred hCCCCC-CCCEEEEeCCCCCccccCccccCCCcchhhhhccHhHH-hhcCCCEEEECCccccceEEECCEEEEecC
Confidence 222222 2678999999998542 11111 111 2333455666 578999999999999987766666677776
No 14
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.83 E-value=3.9e-19 Score=154.54 Aligned_cols=185 Identities=17% Similarity=0.224 Sum_probs=118.9
Q ss_pred ceEEEEEccCCCCCcc----c-----cccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCC-CCcEEEEcCCCCCCCCC
Q psy12823 41 KVRVVCMSDTHSLTPH----I-----RFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLP-HKHKLVIAGNHELSFDP 110 (295)
Q Consensus 41 ~mrI~~iSDlH~~~~~----l-----~~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~-~~pv~~V~GNHD~~~~~ 110 (295)
+|||+++||+|..... + ..+..++|+|+++||+++.+.... ..+.+.++++. ..|+++++||||.+...
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~-~~~~~~l~~l~~~~~v~~v~GNHD~~~~~ 79 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGSVDVL-ELLLELLKKLKAPLGVYAVLGNHDYYSGD 79 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCcchhh-HHHHHHHhccCCCCCEEEECCCcccccCc
Confidence 5899999999997542 2 124468999999999999765443 35566666653 24899999999985321
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEEEc--c--eEEEeecCCCCCCCCC
Q psy12823 111 TFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILY--G--IKFYGTPWQPEFCKWA 186 (295)
Q Consensus 111 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~i~--g--v~i~G~~~~~~~~~~~ 186 (295)
.. .+. +.. ...++.+|.++...+. + +.++|..+.. .
T Consensus 80 ~~----------------------------~~~-----~~l--~~~~v~~L~~~~~~~~~~~~~i~i~G~~~~~-----~ 119 (223)
T cd07385 80 EE----------------------------NWI-----EAL--ESAGITVLRNESVEISVGGATIGIAGVDDGL-----G 119 (223)
T ss_pred hH----------------------------HHH-----HHH--HHcCCEEeecCcEEeccCCeEEEEEeccCcc-----c
Confidence 10 000 001 1246788888776663 3 6667744211 0
Q ss_pred cccCchhhhhhhccCC-CCCccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCCCcEEEeccccCCCCe--------
Q psy12823 187 FNVPRGEACLSKWQDI-PADTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGI-------- 257 (295)
Q Consensus 187 ~~~~~~~~~~~~~~~~-~~~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~~~~~l~GH~H~~~~~-------- 257 (295)
... .+.+.+... ++...|+++|.|-.. + .+ ....++++++||+|.++..
T Consensus 120 -~~~---~~~~~~~~~~~~~~~I~l~H~P~~~--~---------------~~-~~~~~dl~l~GHtHggqi~~~~~~~~~ 177 (223)
T cd07385 120 -RRP---DLEKALKGLDEDDPNILLAHQPDTA--E---------------EA-AAWGVDLQLSGHTHGGQIRLPGIGPLV 177 (223)
T ss_pred -cCC---CHHHHHhCCCCCCCEEEEecCCChh--H---------------Hh-cccCccEEEeccCCCCEEecccccccc
Confidence 111 112222222 346889999997421 0 11 2567899999999987531
Q ss_pred -------------eecCcEEEEeCCcCCC--CCCCCCCCEEEEecC
Q psy12823 258 -------------TSDGRIIFINASTCDL--NYLPTNPPIVFDIAL 288 (295)
Q Consensus 258 -------------~~~g~~~~vn~g~~~~--~~~~~~~~~~~~~~~ 288 (295)
...+..++|+.|.+.. .+|.+++|+|+.+.|
T Consensus 178 ~~~~~~~~~~G~~~~~~~~~~Vs~G~G~~~~~~R~~~~pEi~~i~l 223 (223)
T cd07385 178 LSKLARPYDYGLYRKGGSQLYVSRGLGTWGPPLRLGCPPEITLITL 223 (223)
T ss_pred chhhcCcccceEEEECCEEEEEcCCccCCCCchhcCCCCcEEEEEC
Confidence 1234578999999975 699999999988765
No 15
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.80 E-value=1.4e-18 Score=155.63 Aligned_cols=200 Identities=17% Similarity=0.107 Sum_probs=117.5
Q ss_pred eEEEEEccCCCCCcc-------------c-----cccCCCCcEEEEcCCCCCCCCH---HHHHHHHHHHhcCCCCcEEEE
Q psy12823 42 VRVVCMSDTHSLTPH-------------I-----RFNIPDGDIFIHAGDFTRCGGE---EEVTEFNTWIGNLPHKHKLVI 100 (295)
Q Consensus 42 mrI~~iSDlH~~~~~-------------l-----~~~~~~~D~viiaGDl~~~g~~---~e~~~~~~~L~~l~~~pv~~V 100 (295)
+||+++||+|..... + ..+..++|+||++||+++.+.. ++++.+.+.++++.. |++++
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~-p~~~v 79 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDRLKG-PVHHV 79 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHhcCC-CEEEe
Confidence 489999999965421 1 1234579999999999998876 778888899988874 99999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEEEcceEEEeecCCC
Q psy12823 101 AGNHELSFDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYGIKFYGTPWQP 180 (295)
Q Consensus 101 ~GNHD~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~i~gv~i~G~~~~~ 180 (295)
+||||.......... ........... -+++.++++|+......
T Consensus 80 ~GNHD~~~~~~~~~~---------------------------------~~~~~~~~~~y----ysf~~~~~~~i~lds~~ 122 (267)
T cd07396 80 LGNHDLYNPSREYLL---------------------------------LYTLLGLGAPY----YSFSPGGIRFIVLDGYD 122 (267)
T ss_pred cCccccccccHhhhh---------------------------------cccccCCCCce----EEEecCCcEEEEEeCCc
Confidence 999998522110000 00000000000 02223445555433110
Q ss_pred C-CC----------------------------CC--CcccCchhhhhhhccCC--CCCccEEEecCCCCCCCCCCcCCCc
Q psy12823 181 E-FC----------------------------KW--AFNVPRGEACLSKWQDI--PADTDVLISHTPPIGHGDLCCTGLR 227 (295)
Q Consensus 181 ~-~~----------------------------~~--~~~~~~~~~~~~~~~~~--~~~~~IlvtH~pp~~~~D~~~~~~~ 227 (295)
. +. .| .....+.+++.+.++.. ...+.|+++|+||...... .....
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~~~~~viV~~Hhp~~~~~~~-~~~~~ 201 (267)
T cd07396 123 ISALGRPEDTPKAENADDNSNLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEADANGEKVIIFSHFPLHPESTS-PHGLL 201 (267)
T ss_pred cccccCCCCChhhhhHHHhchhhhhccCccceeccCcCCHHHHHHHHHHHHHHHhcCCeEEEEEeccCCCCCCC-ccccc
Confidence 0 00 00 11112233444444332 2346799999998643210 11122
Q ss_pred cCcHHHHHHHHhh-CCCcEEEeccccCCCCeeecCcEEEEeCCcCCCCCCCCCCCEE
Q psy12823 228 AGCVELLTTVQQR-VKPKYHVFGHVHEGYGITSDGRIIFINASTCDLNYLPTNPPIV 283 (295)
Q Consensus 228 ~g~~~l~~~l~~~-~~~~~~l~GH~H~~~~~~~~g~~~~vn~g~~~~~~~~~~~~~~ 283 (295)
....++.+++. + .++++|+|||+|........|.+.++.+|+|.. .+..+.+-
T Consensus 202 ~~~~~~~~ll~-~~~~V~~v~~GH~H~~~~~~~~gi~~~~~~a~~~~--~~~~~~~~ 255 (267)
T cd07396 202 WNHEEVLSILR-AYGCVKACISGHDHEGGYAQRHGIHFLTLEGMVET--PPESNAFG 255 (267)
T ss_pred cCHHHHHHHHH-hCCCEEEEEcCCcCCCCccccCCeeEEEechhhcC--CCCCCceE
Confidence 34467888884 5 489999999999998766777778888888865 55555553
No 16
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.77 E-value=6.5e-18 Score=137.12 Aligned_cols=124 Identities=24% Similarity=0.345 Sum_probs=96.4
Q ss_pred EEEEccCCCCCccc-----c----------ccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCC--cEEEEcCCCCC
Q psy12823 44 VVCMSDTHSLTPHI-----R----------FNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHK--HKLVIAGNHEL 106 (295)
Q Consensus 44 I~~iSDlH~~~~~l-----~----------~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~--pv~~V~GNHD~ 106 (295)
|+++||+|++...- . .+..++|+|+++||+++.+..+++..+.++++++... |+++|+||||
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~GNHD- 79 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKALDPDLVVITGDLTQRGLPEEFEEAREFLDALPAPLEPVLVVPGNHD- 79 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhccCCCEEEECCCCCCCCCHHHHHHHHHHHHHccccCCcEEEeCCCCe-
Confidence 68999999976421 0 1346899999999999998888888888888887653 8999999999
Q ss_pred CCCCCCCCCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEEEcceEEEeecCCCCCCCCC
Q psy12823 107 SFDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYGIKFYGTPWQPEFCKWA 186 (295)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~i~gv~i~G~~~~~~~~~~~ 186 (295)
.
T Consensus 80 ------------------------------------------------~------------------------------- 80 (144)
T cd07400 80 ------------------------------------------------V------------------------------- 80 (144)
T ss_pred ------------------------------------------------E-------------------------------
Confidence 0
Q ss_pred cccCchhhhhhhccCCCCCccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCCCcEEEeccccCCCCeee---cCcE
Q psy12823 187 FNVPRGEACLSKWQDIPADTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGITS---DGRI 263 (295)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~~~~~l~GH~H~~~~~~~---~g~~ 263 (295)
|+++|+||....... .....+...+.+.+ ++.++++++|||+|..+.... .+.+
T Consensus 81 ---------------------iv~~Hhp~~~~~~~~-~~~~~~~~~~~~~l-~~~~~~~~l~GH~H~~~~~~~~~~~~~~ 137 (144)
T cd07400 81 ---------------------IVVLHHPLVPPPGSG-RERLLDAGDALKLL-AEAGVDLVLHGHKHVPYVGNISNAGGGL 137 (144)
T ss_pred ---------------------EEEecCCCCCCCccc-cccCCCHHHHHHHH-HHcCCCEEEECCCCCcCeeeccCCCCCE
Confidence 889999997553221 11123556788888 578999999999999986553 6789
Q ss_pred EEEeCCc
Q psy12823 264 IFINAST 270 (295)
Q Consensus 264 ~~vn~g~ 270 (295)
.++|+|+
T Consensus 138 ~~~~aGs 144 (144)
T cd07400 138 VVIGAGT 144 (144)
T ss_pred EEEecCC
Confidence 9999985
No 17
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.74 E-value=8.3e-17 Score=143.62 Aligned_cols=209 Identities=14% Similarity=0.138 Sum_probs=117.3
Q ss_pred CCceEEEEEccCCCCCc--c--------------cc-----cc--CCCCcEEEEcCCCCCCCCHH-----HHHHHHHHHh
Q psy12823 39 PKKVRVVCMSDTHSLTP--H--------------IR-----FN--IPDGDIFIHAGDFTRCGGEE-----EVTEFNTWIG 90 (295)
Q Consensus 39 ~~~mrI~~iSDlH~~~~--~--------------l~-----~~--~~~~D~viiaGDl~~~g~~~-----e~~~~~~~L~ 90 (295)
+.+.+++++||+|.+.. . ++ .+ .+++|+|+++||+++.+... +++.+.+.++
T Consensus 2 ~~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T cd07395 2 SGPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLS 81 (262)
T ss_pred CCCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHh
Confidence 46789999999999842 1 11 12 24899999999999977542 3455667777
Q ss_pred cCC-CCcEEEEcCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEEEc
Q psy12823 91 NLP-HKHKLVIAGNHELSFDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILY 169 (295)
Q Consensus 91 ~l~-~~pv~~V~GNHD~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~i~ 169 (295)
++. ..|+++++||||...... .+.+. .+...+..-. -+.+.+
T Consensus 82 ~~~~~vp~~~i~GNHD~~~~~~---------------------------~~~~~------~f~~~~g~~~----y~~~~~ 124 (262)
T cd07395 82 LLDPDIPLVCVCGNHDVGNTPT---------------------------EESIK------DYRDVFGDDY----FSFWVG 124 (262)
T ss_pred hccCCCcEEEeCCCCCCCCCCC---------------------------hhHHH------HHHHHhCCcc----eEEEEC
Confidence 652 248999999999742110 01111 1111111100 123456
Q ss_pred ceEEEeecCCCCC--CCC-CcccCchhhhhhhccCC---CCCccEEEecCCCCCCC-CCCc---CCCccCcHHHHHHHHh
Q psy12823 170 GIKFYGTPWQPEF--CKW-AFNVPRGEACLSKWQDI---PADTDVLISHTPPIGHG-DLCC---TGLRAGCVELLTTVQQ 239 (295)
Q Consensus 170 gv~i~G~~~~~~~--~~~-~~~~~~~~~~~~~~~~~---~~~~~IlvtH~pp~~~~-D~~~---~~~~~g~~~l~~~l~~ 239 (295)
+++|+++...... ... .....+.+++.+.+++. ..+..|+++|+||.... +... ........++.+++ +
T Consensus 125 ~~~~i~lds~~~~~~~~~~~~~~~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll-~ 203 (262)
T cd07395 125 GVFFIVLNSQLFFDPSEVPELAQAQDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKF-K 203 (262)
T ss_pred CEEEEEeccccccCccccccchHHHHHHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHH-H
Confidence 7788876421100 000 11122334444444433 23578999999996321 1110 00011224677777 5
Q ss_pred hCCCcEEEeccccCCCCeeecCcEEEEeCCcCCCCCCCCCCCE-EEEe
Q psy12823 240 RVKPKYHVFGHVHEGYGITSDGRIIFINASTCDLNYLPTNPPI-VFDI 286 (295)
Q Consensus 240 ~~~~~~~l~GH~H~~~~~~~~g~~~~vn~g~~~~~~~~~~~~~-~~~~ 286 (295)
++++++++|||+|........+.+.++.++++. .+....+.+ ++++
T Consensus 204 ~~~V~~v~~GH~H~~~~~~~~g~~~~~~~~~~~-~~~~~~~g~~~~~v 250 (262)
T cd07395 204 KAGVKAVFSGHYHRNAGGRYGGLEMVVTSAIGA-QLGNDKSGLRIVKV 250 (262)
T ss_pred hcCceEEEECccccCCceEECCEEEEEcCceec-ccCCCCCCcEEEEE
Confidence 789999999999998876555554555655553 343333333 4444
No 18
>PHA03008 hypothetical protein; Provisional
Probab=99.74 E-value=5.2e-17 Score=133.42 Aligned_cols=200 Identities=23% Similarity=0.330 Sum_probs=136.0
Q ss_pred eEEEEEccCCCCCccccccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCC--CCCCCCCC
Q psy12823 42 VRVVCMSDTHSLTPHIRFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELSFDPT--FTHPLSSC 119 (295)
Q Consensus 42 mrI~~iSDlH~~~~~l~~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~~~~~--~~~~~~~~ 119 (295)
|.|..+|.+.+....- -...+|+++++ .++.-....-..-+++.+... +.+++||||-|..++.. +..++
T Consensus 1 m~i~~msn~n~p~~~~--~~~~~d~~~~s-nit~~h~~n~i~~ff~~~d~~--~~~ifvpg~~dilfd~~~~~n~~~--- 72 (234)
T PHA03008 1 MHINAMSNINLPRNNK--IDEICDIAFIS-NITHIHDHNIIKIFFDKFDDF--DEIIFVPGDIDILFDDDITFNDEL--- 72 (234)
T ss_pred CceeeecccCCccccC--CcccccEEEEe-cccccccccHHHHHHhhcccc--ceEEEccCCcceEecCCceechhH---
Confidence 6788899887765421 12468888877 666655555666677777776 46999999999977652 21111
Q ss_pred CCCCccccccccCCCCCCCchhhHHHHH---hhhhhhccCCeEEccCCcEEE----cceEEEeecCCCC--CC-------
Q psy12823 120 RSPSRTMHLINEIPTLGLPRDSLTEAVK---ARNMRDRLTNCTYLQDEERIL----YGIKFYGTPWQPE--FC------- 183 (295)
Q Consensus 120 ~~~~~g~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~L~~~~~~i----~gv~i~G~~~~~~--~~------- 183 (295)
+..++ .|..||.-+. .+.+.....++.||+++.+++ ++++|+|+||+|. ++
T Consensus 73 ~h~~~-------------~rkilr~~~~~~~~~~~~~n~gnIIYLeDs~VtI~f~~rgIKIYGSP~sP~~~F~~sai~k~ 139 (234)
T PHA03008 73 HHHVH-------------NRKILRHGILKTYNENIDDNELDIIILRDDLIEFDFFDDIIKIYGQSHIEDKKFKNSHIHKA 139 (234)
T ss_pred hhHHH-------------HHHHHHhhhhhhhcccccCCCCCEEEEeCCcEEEEecCCceEEECCCCCcchhccccccccc
Confidence 11111 1333433210 122222346899999999999 7999999999997 52
Q ss_pred --CCCcccCchhhhhhhccCCCCCccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCCCcEEEeccc----cCCCCe
Q psy12823 184 --KWAFNVPRGEACLSKWQDIPADTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHV----HEGYGI 257 (295)
Q Consensus 184 --~~~~~~~~~~~~~~~~~~~~~~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~~~~~l~GH~----H~~~~~ 257 (295)
.|+|.....++.. -|..+|+ .+||+||.||.+.+|. +.||++|++.+ .+.+|++++|||. |.+.
T Consensus 140 ~~~wAf~~~~d~~i~-wwn~IP~-tDILITHgPP~GhLD~-----~vGC~~Ll~~I-~rVKPKyHVFGh~~~~~~p~~-- 209 (234)
T PHA03008 140 LEGIAHIKKNDDEIN-YRNHIPK-CDILITASPPFAILDD-----DLACGDLFSKV-IKIKPKFHIFNGLTQFSHPNI-- 209 (234)
T ss_pred ccccccccCccccch-hhccCCC-CCEEEeCCCCcccccc-----ccCcHHHHHHH-HHhCCcEEEeCCccccCCCcE--
Confidence 2555544333222 3566785 9999999999999885 58999999999 4899999999993 3322
Q ss_pred eecCcEEEEeCCcCC
Q psy12823 258 TSDGRIIFINASTCD 272 (295)
Q Consensus 258 ~~~g~~~~vn~g~~~ 272 (295)
.......++|+....
T Consensus 210 ~~y~di~f~nsni~~ 224 (234)
T PHA03008 210 FIYKDIIFINSNINH 224 (234)
T ss_pred EEecceEEEeccccc
Confidence 356788899987754
No 19
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.73 E-value=3.6e-17 Score=141.79 Aligned_cols=184 Identities=18% Similarity=0.160 Sum_probs=108.6
Q ss_pred EEEEEccCCCCCcc---------------cc-----ccCCCCcEEEEcCCCCCCCC--HHHHHHHHHHHhcCC--CCcEE
Q psy12823 43 RVVCMSDTHSLTPH---------------IR-----FNIPDGDIFIHAGDFTRCGG--EEEVTEFNTWIGNLP--HKHKL 98 (295)
Q Consensus 43 rI~~iSDlH~~~~~---------------l~-----~~~~~~D~viiaGDl~~~g~--~~e~~~~~~~L~~l~--~~pv~ 98 (295)
||+++||+|++... +. ....++|+|+++||+++... ..++..+.++++++. ..|++
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVF 80 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Confidence 69999999997531 11 13468999999999998654 345556777777662 35899
Q ss_pred EEcCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEc-----cCCc----EEEc
Q psy12823 99 VIAGNHELSFDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYL-----QDEE----RILY 169 (295)
Q Consensus 99 ~V~GNHD~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L-----~~~~----~~i~ 169 (295)
+++||||.+....... ... ...++..+ .... ....
T Consensus 81 ~~~GNHD~~~~~~~~~-------------------------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (223)
T cd00840 81 IIAGNHDSPSRLGALS-------------------------PLL-----------ALSGLHLVGVEEDVLTPLLLPKGGT 124 (223)
T ss_pred EecCCCCCcccccccc-------------------------chH-----------hhCcEEEEcccCcceeEEEeccCCe
Confidence 9999999863221100 000 01122222 1111 1123
Q ss_pred ceEEEeecCCCCCCCCCcccCchhhhhhhcc-CCCCCccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCCCcEEEe
Q psy12823 170 GIKFYGTPWQPEFCKWAFNVPRGEACLSKWQ-DIPADTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVF 248 (295)
Q Consensus 170 gv~i~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~~~~~l~ 248 (295)
++.|+|+++... +.... ..+.+..... ..+..+.|+++|++..+...... .. .+...+.+ ...+++++++
T Consensus 125 ~v~i~g~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~Il~~H~~~~~~~~~~~--~~--~~~~~~~~-~~~~~d~v~~ 195 (223)
T cd00840 125 GVAIYGLPYLRR---SRLRD-LLADAELRPRPLDPDDFNILLLHGGVAGAGPSDS--ER--APFVPEAL-LPAGFDYVAL 195 (223)
T ss_pred EEEEEECCCCCH---HHHHH-HHHHHHHHhhccCCCCcEEEEEeeeeecCCCCcc--cc--cccCcHhh-cCcCCCEEEC
Confidence 688999986431 11000 0000111111 22456889999999876532210 00 11233334 3678999999
Q ss_pred ccccCCCCeeecCcEEEEeCCcCC
Q psy12823 249 GHVHEGYGITSDGRIIFINASTCD 272 (295)
Q Consensus 249 GH~H~~~~~~~~g~~~~vn~g~~~ 272 (295)
||+|.+... ..+++.+++||+..
T Consensus 196 GH~H~~~~~-~~~~~~~~ypGS~~ 218 (223)
T cd00840 196 GHIHRPQII-LGGGPPIVYPGSPE 218 (223)
T ss_pred CCcccCeee-cCCCceEEeCCCcc
Confidence 999998864 56778899999874
No 20
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.72 E-value=4.9e-17 Score=146.07 Aligned_cols=88 Identities=22% Similarity=0.372 Sum_probs=66.4
Q ss_pred cceeeeeeecCCCCCCCCCCceEEEEEccCCCCCccc-------cccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCC
Q psy12823 21 GSQKVIKINVQPPKTQVDPKKVRVVCMSDTHSLTPHI-------RFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLP 93 (295)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~mrI~~iSDlH~~~~~l-------~~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~ 93 (295)
+.-.+.++++..++.+....+.||+++||+|...... ......+|+|+++||+++....+......+.|+++.
T Consensus 24 ~~l~~~~~~i~~~~~~~~~~~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~DlivltGD~~~~~~~~~~~~~~~~L~~L~ 103 (284)
T COG1408 24 GWLRVVKLTILTPKLPASLQGLKIVQLSDLHSLPFREEKLALLIAIANELPDLIVLTGDYVDGDRPPGVAALALFLAKLK 103 (284)
T ss_pred ceEEEEEEEeecCCCCcccCCeEEEEeehhhhchhhHHHHHHHHHHHhcCCCEEEEEeeeecCCCCCCHHHHHHHHHhhh
Confidence 3447788888889999999999999999999976542 123345699999999998533344445666776665
Q ss_pred CC-cEEEEcCCCCCCC
Q psy12823 94 HK-HKLVIAGNHELSF 108 (295)
Q Consensus 94 ~~-pv~~V~GNHD~~~ 108 (295)
.. ++|+|.||||++.
T Consensus 104 ~~~gv~av~GNHd~~~ 119 (284)
T COG1408 104 APLGVFAVLGNHDYGV 119 (284)
T ss_pred ccCCEEEEeccccccc
Confidence 32 6999999999864
No 21
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.71 E-value=2.8e-16 Score=141.50 Aligned_cols=65 Identities=26% Similarity=0.425 Sum_probs=55.0
Q ss_pred eEEEEEccCCCCC-ccc----------cccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHh--cCCCCcEEEEcCCCCCC
Q psy12823 42 VRVVCMSDTHSLT-PHI----------RFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIG--NLPHKHKLVIAGNHELS 107 (295)
Q Consensus 42 mrI~~iSDlH~~~-~~l----------~~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~--~l~~~pv~~V~GNHD~~ 107 (295)
|||++|||+|... ... ..+..++|+||++|||++.+..++++.+.++|+ .++ .|++++|||||.+
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~~~~~~~~~~~~l~~~~~~-~~~~~vpGNHD~~ 78 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDGEPEEYRRLKELLARLELP-APVIVVPGNHDAR 78 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCCCCHHHHHHHHHHHhhccCC-CceEeeCCCCcCC
Confidence 7999999999983 211 134578999999999999999999999999999 554 4899999999976
No 22
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=99.71 E-value=2e-16 Score=140.62 Aligned_cols=192 Identities=19% Similarity=0.255 Sum_probs=115.7
Q ss_pred EEEEccCCCCCcccc--------ccCCCCcEEEEcCCCCCCCCHHH------------HHHHHHHHhcCCC--CcEEEEc
Q psy12823 44 VVCMSDTHSLTPHIR--------FNIPDGDIFIHAGDFTRCGGEEE------------VTEFNTWIGNLPH--KHKLVIA 101 (295)
Q Consensus 44 I~~iSDlH~~~~~l~--------~~~~~~D~viiaGDl~~~g~~~e------------~~~~~~~L~~l~~--~pv~~V~ 101 (295)
|++++|+|+....+. .+..++|+||+|||+....+..+ ...+.+++..+.. .|+++|.
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~ 80 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIG 80 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEEC
Confidence 688999999876541 12358999999999976543221 1233455544321 2689999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccC-CcEEEcceEEEeecCCC
Q psy12823 102 GNHELSFDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQD-EERILYGIKFYGTPWQP 180 (295)
Q Consensus 102 GNHD~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~-~~~~i~gv~i~G~~~~~ 180 (295)
||||.. .....+ .+| .| ...|+.+|.. ++++++|++|+|++...
T Consensus 81 GNHE~~---~~l~~l------~~g------------------------g~--v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~ 125 (262)
T cd00844 81 GNHEAS---NYLWEL------PYG------------------------GW--VAPNIYYLGYAGVVNFGGLRIAGLSGIY 125 (262)
T ss_pred CCCCCH---HHHHhh------cCC------------------------Ce--ecCcEEEecCCCEEEECCeEEEEecccc
Confidence 999953 100000 000 11 1357888865 67789999999987432
Q ss_pred C---CCC-----CCcccCchhhhh-------hhccCCCCCccEEEecCCCCCCCCCCc---------------CCCccCc
Q psy12823 181 E---FCK-----WAFNVPRGEACL-------SKWQDIPADTDVLISHTPPIGHGDLCC---------------TGLRAGC 230 (295)
Q Consensus 181 ~---~~~-----~~~~~~~~~~~~-------~~~~~~~~~~~IlvtH~pp~~~~D~~~---------------~~~~~g~ 230 (295)
. +.. ..+.......+. ..+..+..+.+|++||.||.++.+... ...+.|+
T Consensus 126 ~~~~~~~~~~~~~~~t~~~~rs~y~~r~~~~~kl~~~~~~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs 205 (262)
T cd00844 126 KSHDYRKGHFERPPYSEDTKRSAYHVRNIEVFKLKQLKQPIDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGS 205 (262)
T ss_pred cccccccccccCCCCCHHHHHHhhhhhHHHHHHHHhcCCCCcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCC
Confidence 1 110 111111111110 011222347899999999998744321 0116799
Q ss_pred HHHHHHHHhhCCCcEEEeccccCCCCeee----------cCcEEEEeCCcC
Q psy12823 231 VELLTTVQQRVKPKYHVFGHVHEGYGITS----------DGRIIFINASTC 271 (295)
Q Consensus 231 ~~l~~~l~~~~~~~~~l~GH~H~~~~~~~----------~g~~~~vn~g~~ 271 (295)
+.+.+++ ++.+|+||+|||.|..+.... ...|.|++-+-|
T Consensus 206 ~~~~~ll-~~lkPryhf~gH~H~~f~~~~~~~~~~~~~~~~~TRFiaL~k~ 255 (262)
T cd00844 206 PAAEELL-KHLKPRYWFSAHLHVKFAALVPHENKSPGNTNKETKFLALDKC 255 (262)
T ss_pred HHHHHHH-HHhCCCEEEEecCCcccceecCCcccccCCCCcceEEEEcccc
Confidence 8888888 699999999999999776321 235667766655
No 23
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.69 E-value=6.4e-16 Score=127.64 Aligned_cols=146 Identities=21% Similarity=0.256 Sum_probs=92.0
Q ss_pred eEEEEEccCCCCCcccc-----ccCC-CCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCCC
Q psy12823 42 VRVVCMSDTHSLTPHIR-----FNIP-DGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELSFDPTFTHP 115 (295)
Q Consensus 42 mrI~~iSDlH~~~~~l~-----~~~~-~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~~~~~~~~~ 115 (295)
|||+++||+|.+...++ .+.. ++|.|+++||++. .++++.++++. .|+++|.||||.... .
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~-------~~~~~~l~~~~-~~~~~V~GN~D~~~~-~---- 67 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLTS-------PFVLKEFEDLA-AKVIAVRGNNDGERD-E---- 67 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCCC-------HHHHHHHHHhC-CceEEEccCCCchhh-h----
Confidence 89999999998775431 2333 8999999999973 14556666665 379999999995310 0
Q ss_pred CCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEEEcceEEEeecCCCCCCCCCcccCchhhh
Q psy12823 116 LSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYGIKFYGTPWQPEFCKWAFNVPRGEAC 195 (295)
Q Consensus 116 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~i~gv~i~G~~~~~~~~~~~~~~~~~~~~ 195 (295)
+ ... ..++
T Consensus 68 -----------------------------------~---~~~------~~~~---------------------------- 75 (158)
T TIGR00040 68 -----------------------------------L---PEE------EIFE---------------------------- 75 (158)
T ss_pred -----------------------------------C---Ccc------eEEE----------------------------
Confidence 0 000 0000
Q ss_pred hhhccCCCCCccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCCCcEEEeccccCCCCeeecCcEEEEeCCcCCCCC
Q psy12823 196 LSKWQDIPADTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGITSDGRIIFINASTCDLNY 275 (295)
Q Consensus 196 ~~~~~~~~~~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~~~~~l~GH~H~~~~~~~~g~~~~vn~g~~~~~~ 275 (295)
+ .+.+|+++|..+.... .. .+....+....++++++|||+|.+.. ...++++++|||+.+..
T Consensus 76 ------~-~g~~i~l~Hg~~~~~~--------~~-~~~l~~~~~~~~~d~vi~GHtH~~~~-~~~~~~~~iNpGs~~~~- 137 (158)
T TIGR00040 76 ------A-EGIDFGLVHGDLVYPR--------GD-LLVLEYLAKELGVDVLIFGHTHIPVA-EELRGILLINPGSLTGP- 137 (158)
T ss_pred ------E-CCEEEEEEeCcccccC--------CC-HHHHHHHHhccCCCEEEECCCCCCcc-EEECCEEEEECCccccc-
Confidence 0 2456999998863211 11 12233332456889999999999885 44567899999998753
Q ss_pred CCCCCCEEEEecCCC
Q psy12823 276 LPTNPPIVFDIALPP 290 (295)
Q Consensus 276 ~~~~~~~~~~~~~~~ 290 (295)
|..++|....+++..
T Consensus 138 ~~~~~~~~~il~~~~ 152 (158)
T TIGR00040 138 RNGNTPSYAILDVDK 152 (158)
T ss_pred cCCCCCeEEEEEecC
Confidence 222245555555443
No 24
>PRK09453 phosphodiesterase; Provisional
Probab=99.69 E-value=4e-16 Score=131.90 Aligned_cols=65 Identities=20% Similarity=0.358 Sum_probs=48.4
Q ss_pred eEEEEEccCCCCCcccc-----ccCCCCcEEEEcCCCCCCCCH------HHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy12823 42 VRVVCMSDTHSLTPHIR-----FNIPDGDIFIHAGDFTRCGGE------EEVTEFNTWIGNLPHKHKLVIAGNHELS 107 (295)
Q Consensus 42 mrI~~iSDlH~~~~~l~-----~~~~~~D~viiaGDl~~~g~~------~e~~~~~~~L~~l~~~pv~~V~GNHD~~ 107 (295)
|||+++||+|++...++ .+..++|.|+++||+++.+.. .+..++.+.|+++. .++++|+||||..
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~-~~v~~V~GNhD~~ 76 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYA-DKIIAVRGNCDSE 76 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcC-CceEEEccCCcch
Confidence 89999999998766431 234689999999999976531 11235667777765 3799999999964
No 25
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.66 E-value=4.6e-16 Score=134.92 Aligned_cols=65 Identities=23% Similarity=0.308 Sum_probs=50.3
Q ss_pred eEEEEEccCCCCCcc----c---------cccCCCCcEEEEcCCCCCCCC-HHHHHHHHHHHhcCC--CCcEEEEcCCCC
Q psy12823 42 VRVVCMSDTHSLTPH----I---------RFNIPDGDIFIHAGDFTRCGG-EEEVTEFNTWIGNLP--HKHKLVIAGNHE 105 (295)
Q Consensus 42 mrI~~iSDlH~~~~~----l---------~~~~~~~D~viiaGDl~~~g~-~~e~~~~~~~L~~l~--~~pv~~V~GNHD 105 (295)
++|+++||+|..... + ..+..++|+|+++||+++.+. ..++..+.+.++.+. ..|+++++||||
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 80 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNHD 80 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCCc
Confidence 489999999986542 1 123468999999999999887 677777777777653 248999999999
Q ss_pred C
Q psy12823 106 L 106 (295)
Q Consensus 106 ~ 106 (295)
.
T Consensus 81 ~ 81 (214)
T cd07399 81 L 81 (214)
T ss_pred c
Confidence 4
No 26
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.66 E-value=2.9e-16 Score=128.53 Aligned_cols=137 Identities=23% Similarity=0.241 Sum_probs=85.3
Q ss_pred eEEEEEccCCCCCcccc---ccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCCCCCC
Q psy12823 42 VRVVCMSDTHSLTPHIR---FNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELSFDPTFTHPLSS 118 (295)
Q Consensus 42 mrI~~iSDlH~~~~~l~---~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~~~~~~~~~~~~ 118 (295)
|||+++||+|++...++ ....++|.|+++||+++. +++++.+++. |+++|.||||... +.
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~~~~d~vi~~GDi~~~------~~~~~~~~~~---~~~~v~GNHD~~~---~~----- 63 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYINEPDFVIILGDIFDP------EEVLELLRDI---PVYVVRGNHDNWA---FP----- 63 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHHTTESEEEEES-SCSH------HHHHHHHHHH---EEEEE--CCHSTH---HH-----
T ss_pred CEEEEEeCCCCChhHHHHHHHHhcCCCEEEECCCchhH------HHHHHHHhcC---CEEEEeCCccccc---ch-----
Confidence 99999999999876541 112579999999999882 3566666654 8999999999531 00
Q ss_pred CCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEEEcceEEEeecCCCCCCCCCcccCchhhhhhh
Q psy12823 119 CRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYGIKFYGTPWQPEFCKWAFNVPRGEACLSK 198 (295)
Q Consensus 119 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~i~gv~i~G~~~~~~~~~~~~~~~~~~~~~~~ 198 (295)
+. ..... +.. .
T Consensus 64 -------------------------------~~--~~~~~--~~~----------------------------------~ 74 (156)
T PF12850_consen 64 -------------------------------NE--NDEEY--LLD----------------------------------A 74 (156)
T ss_dssp -------------------------------SE--ECTCS--SHS----------------------------------E
T ss_pred -------------------------------hh--hhccc--ccc----------------------------------c
Confidence 00 00000 000 0
Q ss_pred ccCCCCCccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCCCcEEEeccccCCCCeeecCcEEEEeCCcCCCC
Q psy12823 199 WQDIPADTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGITSDGRIIFINASTCDLN 274 (295)
Q Consensus 199 ~~~~~~~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~~~~~l~GH~H~~~~~~~~g~~~~vn~g~~~~~ 274 (295)
.....++..|+++|+.+.... .+...+.+.+ ...++++++|||+|.+... ..+++.++|+|+....
T Consensus 75 ~~~~~~~~~i~~~H~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~GH~H~~~~~-~~~~~~~~~~Gs~~~~ 140 (156)
T PF12850_consen 75 LRLTIDGFKILLSHGHPYDVQ--------WDPAELREIL-SRENVDLVLHGHTHRPQVF-KIGGIHVINPGSIGGP 140 (156)
T ss_dssp EEEEETTEEEEEESSTSSSST--------TTHHHHHHHH-HHTTSSEEEESSSSSEEEE-EETTEEEEEE-GSSS-
T ss_pred eeeeecCCeEEEECCCCcccc--------cChhhhhhhh-cccCCCEEEcCCcccceEE-EECCEEEEECCcCCCC
Confidence 000013578999999987531 2233455566 4889999999999998854 4678899999998653
No 27
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.64 E-value=4.9e-15 Score=131.93 Aligned_cols=193 Identities=13% Similarity=0.143 Sum_probs=103.8
Q ss_pred EEEEccCCCCCcc------c------cccCCCCcEEEEcCCCCCCCC---------HHHHHHHHHHHhcC---CCCcEEE
Q psy12823 44 VVCMSDTHSLTPH------I------RFNIPDGDIFIHAGDFTRCGG---------EEEVTEFNTWIGNL---PHKHKLV 99 (295)
Q Consensus 44 I~~iSDlH~~~~~------l------~~~~~~~D~viiaGDl~~~g~---------~~e~~~~~~~L~~l---~~~pv~~ 99 (295)
|+++||+|++... . ..+..+||+||++||+++... .+++..+++.+... ...|++.
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 81 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWFD 81 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEEE
Confidence 7899999997542 1 124568999999999998543 22333455555432 2248999
Q ss_pred EcCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccC-C-eEEccCCcEEEcceEEEeec
Q psy12823 100 IAGNHELSFDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLT-N-CTYLQDEERILYGIKFYGTP 177 (295)
Q Consensus 100 V~GNHD~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~-~~~L~~~~~~i~gv~i~G~~ 177 (295)
|+||||.+...... .. ....+ ++..... . ..+.. ..+.+++.|+|+.
T Consensus 82 v~GNHD~~~~~~~~-~~----------------------~~~~~------~y~~~~~~~~~~~~~--~~~~~~~~~I~Ld 130 (256)
T cd07401 82 IRGNHDLFNIPSLD-SE----------------------NNYYR------KYSATGRDGSFSFSH--TTRFGNYSFIGVD 130 (256)
T ss_pred eCCCCCcCCCCCcc-ch----------------------hhHHH------HhheecCCCccceEE--EecCCCEEEEEEc
Confidence 99999986221110 00 00000 0100000 0 00100 0113578888876
Q ss_pred CCCCC--CC-----CCcccCchhhhhhhccCCC-CCccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCCCcEEEec
Q psy12823 178 WQPEF--CK-----WAFNVPRGEACLSKWQDIP-ADTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFG 249 (295)
Q Consensus 178 ~~~~~--~~-----~~~~~~~~~~~~~~~~~~~-~~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~~~~~l~G 249 (295)
..... .. ......+.+++.+.+.+.+ .+..|+++|+|+....+.. ...+ ..+.+++ +++++++++||
T Consensus 131 t~~~~~~~~~~~~~g~l~~~ql~wL~~~L~~~~~~~~~IV~~HhP~~~~~~~~---~~~~-~~~~~ll-~~~~v~~vl~G 205 (256)
T cd07401 131 PTLFPGPKRPFNFFGSLDKKLLDRLEKELEKSTNSNYTIWFGHYPTSTIISPS---AKSS-SKFKDLL-KKYNVTAYLCG 205 (256)
T ss_pred CccCCCCCCCCceeccCCHHHHHHHHHHHHhcccCCeEEEEEcccchhccCCC---cchh-HHHHHHH-HhcCCcEEEeC
Confidence 32100 00 1112223344444444433 3568999999985322111 1112 2477777 58899999999
Q ss_pred cccCCCC---eeecC--cEEEEeCCcCC
Q psy12823 250 HVHEGYG---ITSDG--RIIFINASTCD 272 (295)
Q Consensus 250 H~H~~~~---~~~~g--~~~~vn~g~~~ 272 (295)
|+|.... ....| ..++.||....
T Consensus 206 H~H~~~~~~p~h~~~~~~~~~~~p~~~~ 233 (256)
T cd07401 206 HLHPLGGLEPVHYAGHPYALITNPKPSL 233 (256)
T ss_pred CccCCCcceeeeecCCceEEEeCCCChH
Confidence 9999876 22233 34566777654
No 28
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.63 E-value=3.1e-15 Score=119.48 Aligned_cols=61 Identities=34% Similarity=0.582 Sum_probs=45.1
Q ss_pred EEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCCCcEEEeccccCCCCee----ecCcEEEEeCCc
Q psy12823 208 VLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGIT----SDGRIIFINAST 270 (295)
Q Consensus 208 IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~~~~~l~GH~H~~~~~~----~~g~~~~vn~g~ 270 (295)
|+++|+||.+..+.. .....|++.+.+.+ .+.++++++|||+|.+.... ..++|.++|++-
T Consensus 59 Ilv~H~pp~~~~~~~-~~~~~g~~~l~~~l-~~~~~~~vl~GH~H~~~~~~~~~~~~~~t~~~n~~~ 123 (129)
T cd07403 59 ILLTHAPPAGIGDGE-DFAHRGFEAFLDFI-DRFRPKLFIHGHTHLNYGYQLRIRRVGDTTVINAYG 123 (129)
T ss_pred EEEECCCCCcCcCcc-cccccCHHHHHHHH-HHHCCcEEEEcCcCCCcCccccccccCCEEEEeCCc
Confidence 777788876543221 12346777888887 57789999999999998765 478999999874
No 29
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=99.62 E-value=5e-15 Score=120.88 Aligned_cols=167 Identities=22% Similarity=0.352 Sum_probs=105.5
Q ss_pred eEEEEEccCCCCCcc---c------------------cccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEE
Q psy12823 42 VRVVCMSDTHSLTPH---I------------------RFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVI 100 (295)
Q Consensus 42 mrI~~iSDlH~~~~~---l------------------~~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V 100 (295)
|+|..+||+|+.... + +.....-|+|++.|||.-.-+.++.+.-+.++..++. ..|+|
T Consensus 1 M~iyaiaDLHLa~~~pKpM~vFGe~W~gh~ekI~k~W~~~v~~eDiVllpGDiSWaM~l~ea~~Dl~~i~~LPG-~K~m~ 79 (230)
T COG1768 1 MRIYAIADLHLALGVPKPMEVFGEPWSGHHEKIKKHWRSKVSPEDIVLLPGDISWAMRLEEAEEDLRFIGDLPG-TKYMI 79 (230)
T ss_pred CceeeeehhhHhhCCCCceeecCCcccCchHHHHHHHHhcCChhhEEEecccchhheechhhhhhhhhhhcCCC-cEEEE
Confidence 899999999986431 1 1133567999999999876667777788899999987 57999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEEEcceEEEeec-CC
Q psy12823 101 AGNHELSFDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYGIKFYGTP-WQ 179 (295)
Q Consensus 101 ~GNHD~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~i~gv~i~G~~-~~ 179 (295)
.||||+|+... ..|+ ...+...++.++.+++.++.|.|.. |.
T Consensus 80 rGNHDYWw~s~----------------------------skl~---------n~lp~~l~~~n~~f~l~n~aI~G~RgW~ 122 (230)
T COG1768 80 RGNHDYWWSSI----------------------------SKLN---------NALPPILFYLNNGFELLNYAIVGVRGWD 122 (230)
T ss_pred ecCCccccchH----------------------------HHHH---------hhcCchHhhhccceeEeeEEEEEeeccc
Confidence 99999974210 1111 1122223333556666678888865 53
Q ss_pred CCCCCC-CcccCchhh--------hh-hhccCCCC--CccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCCCcEEE
Q psy12823 180 PEFCKW-AFNVPRGEA--------CL-SKWQDIPA--DTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHV 247 (295)
Q Consensus 180 ~~~~~~-~~~~~~~~~--------~~-~~~~~~~~--~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~~~~~l 247 (295)
.....| .+.. +.++ +. ++...++. ..-|+|+|.||... |.. .| .+.+.+ ++.+++.++
T Consensus 123 s~~~~~e~~te-~Deki~~RE~~RLrlsa~a~l~k~~~~fivM~HYPP~s~-~~t-----~~--~~sevl-ee~rv~~~l 192 (230)
T COG1768 123 SPSFDSEPLTE-QDEKIFLREIGRLRLSADAALPKGVSKFIVMTHYPPFSD-DGT-----PG--PFSEVL-EEGRVSKCL 192 (230)
T ss_pred CCCCCcCccch-hHHHHHHHHHHHHHHHHHHhcccCcCeEEEEEecCCCCC-CCC-----Cc--chHHHH-hhcceeeEE
Confidence 211112 1221 1111 11 12233443 35699999999843 221 22 466677 489999999
Q ss_pred eccccCCCC
Q psy12823 248 FGHVHEGYG 256 (295)
Q Consensus 248 ~GH~H~~~~ 256 (295)
+||.|....
T Consensus 193 yGHlHgv~~ 201 (230)
T COG1768 193 YGHLHGVPR 201 (230)
T ss_pred eeeccCCCC
Confidence 999998763
No 30
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.62 E-value=2.6e-14 Score=120.40 Aligned_cols=143 Identities=11% Similarity=0.160 Sum_probs=90.0
Q ss_pred EEEEEccCCCCCcc------c-c-ccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCC
Q psy12823 43 RVVCMSDTHSLTPH------I-R-FNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELSFDPTFTH 114 (295)
Q Consensus 43 rI~~iSDlH~~~~~------l-~-~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~~~~~~~~ 114 (295)
+|+++||+|+.... + + .+..++|.|++|||++. .+..+.|+++.. ++++|.||||... .+
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~~~~d~iih~GDi~~-------~~~~~~l~~~~~-~~~~V~GN~D~~~--~l-- 68 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVPGKIQHVLCTGNLCS-------KETYDYLKTIAP-DVHIVRGDFDENL--NY-- 68 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhccCCCCEEEECCCCCC-------HHHHHHHHhhCC-ceEEEECCCCccc--cC--
Confidence 48999999965432 1 1 12357999999999976 245566666542 7999999999531 00
Q ss_pred CCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEEEcceEEEeecCCCCCCCCCcccCchhh
Q psy12823 115 PLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYGIKFYGTPWQPEFCKWAFNVPRGEA 194 (295)
Q Consensus 115 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~i~gv~i~G~~~~~~~~~~~~~~~~~~~ 194 (295)
+... .+++
T Consensus 69 -----------------------------------------p~~~-----~~~~-------------------------- 76 (178)
T cd07394 69 -----------------------------------------PETK-----VITV-------------------------- 76 (178)
T ss_pred -----------------------------------------CCcE-----EEEE--------------------------
Confidence 0000 0000
Q ss_pred hhhhccCCCCCccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCCCcEEEeccccCCCCeeecCcEEEEeCCcCCCC
Q psy12823 195 CLSKWQDIPADTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGITSDGRIIFINASTCDLN 274 (295)
Q Consensus 195 ~~~~~~~~~~~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~~~~~l~GH~H~~~~~~~~g~~~~vn~g~~~~~ 274 (295)
++.+|+++|..+.... .....+.+.. +..++++++|||+|.+.. ...++++++|||+.+.+
T Consensus 77 ---------~g~~i~l~HG~~~~~~--------~~~~~~~~~~-~~~~~dvii~GHTH~p~~-~~~~g~~viNPGSv~~~ 137 (178)
T cd07394 77 ---------GQFKIGLIHGHQVVPW--------GDPDSLAALQ-RQLDVDILISGHTHKFEA-FEHEGKFFINPGSATGA 137 (178)
T ss_pred ---------CCEEEEEEECCcCCCC--------CCHHHHHHHH-HhcCCCEEEECCCCcceE-EEECCEEEEECCCCCCC
Confidence 3467999998764221 1222344433 467889999999999874 45678999999999753
Q ss_pred C---CCCCCCEEEEecC
Q psy12823 275 Y---LPTNPPIVFDIAL 288 (295)
Q Consensus 275 ~---~~~~~~~~~~~~~ 288 (295)
. +....|....+++
T Consensus 138 ~~~~~~~~~~syail~~ 154 (178)
T cd07394 138 FSPLDPNVIPSFVLMDI 154 (178)
T ss_pred CCCCCCCCCCeEEEEEe
Confidence 2 3333445444433
No 31
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.62 E-value=4.4e-15 Score=127.25 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=45.8
Q ss_pred ceEEEEEccCCCCCcc---------------cc--ccCCCCcEEEEcCCCCCCCCHH-----HHHHHHHHHhcCCCCcEE
Q psy12823 41 KVRVVCMSDTHSLTPH---------------IR--FNIPDGDIFIHAGDFTRCGGEE-----EVTEFNTWIGNLPHKHKL 98 (295)
Q Consensus 41 ~mrI~~iSDlH~~~~~---------------l~--~~~~~~D~viiaGDl~~~g~~~-----e~~~~~~~L~~l~~~pv~ 98 (295)
.+||+++||+|+.... +. .+..++|+||++||+++..... .+.++++.+.+.. .|++
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~-~p~~ 80 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRK-IPWA 80 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcC-CCEE
Confidence 5899999999996542 00 2346899999999999865532 2333444444434 4899
Q ss_pred EEcCCCCC
Q psy12823 99 VIAGNHEL 106 (295)
Q Consensus 99 ~V~GNHD~ 106 (295)
+++||||.
T Consensus 81 ~~~GNHD~ 88 (199)
T cd07383 81 ATFGNHDG 88 (199)
T ss_pred EECccCCC
Confidence 99999994
No 32
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.62 E-value=7.1e-15 Score=133.12 Aligned_cols=207 Identities=14% Similarity=0.103 Sum_probs=111.2
Q ss_pred CCceEEEEEccCCCCCcc----c---cccCCCCcEEEEcCCCCCCCC-H--HHHHHHHHHHhcCC-CCcEEEEcCCCCCC
Q psy12823 39 PKKVRVVCMSDTHSLTPH----I---RFNIPDGDIFIHAGDFTRCGG-E--EEVTEFNTWIGNLP-HKHKLVIAGNHELS 107 (295)
Q Consensus 39 ~~~mrI~~iSDlH~~~~~----l---~~~~~~~D~viiaGDl~~~g~-~--~e~~~~~~~L~~l~-~~pv~~V~GNHD~~ 107 (295)
..+.||++++|+|..... + .....++|+||++||+++.+. . .++..+++.++.+. ..|++.++||||..
T Consensus 2 ~~~~~f~v~gD~~~~~~~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~ 81 (294)
T cd00839 2 DTPFKFAVFGDMGQNTNNSTNTLDHLEKELGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLASYVPYMVTPGNHEAD 81 (294)
T ss_pred CCcEEEEEEEECCCCCCCcHHHHHHHHhccCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHhcCCcEEcCcccccc
Confidence 467899999999974221 1 112368999999999996443 2 45556666666541 24999999999986
Q ss_pred CCCCCCCCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEEEcceEEEeecCCCCCCCCCc
Q psy12823 108 FDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYGIKFYGTPWQPEFCKWAF 187 (295)
Q Consensus 108 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~i~gv~i~G~~~~~~~~~~~~ 187 (295)
........ ..+. .+..+ .........+.. -+++++++.|+++...........
T Consensus 82 ~~~~~~~~------~~~~------------~~~~~-----~~~~~~~~~~~~----Ysf~~g~v~fi~Lds~~~~~~~~~ 134 (294)
T cd00839 82 YNFSFYKI------KAFF------------PRFRF-----PHSPSGSTSNLW----YSFDVGPVHFVSLSTEVDFYGDGP 134 (294)
T ss_pred cCCCCccc------cccc------------ccccc-----cCCCCCCCCCce----EEEeeCCEEEEEEecccccccCCC
Confidence 32211000 0000 00000 000000001111 135667888998763211100112
Q ss_pred ccCchhhhhhhccCCCC---CccEEEecCCCCCCCCCCcC--CCccCcHHHHHHHHhhCCCcEEEeccccCCCCee----
Q psy12823 188 NVPRGEACLSKWQDIPA---DTDVLISHTPPIGHGDLCCT--GLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGIT---- 258 (295)
Q Consensus 188 ~~~~~~~~~~~~~~~~~---~~~IlvtH~pp~~~~D~~~~--~~~~g~~~l~~~l~~~~~~~~~l~GH~H~~~~~~---- 258 (295)
...+.+++.+.+.+... ...|+++|+|++........ ........+.+++ +++++++++|||+|......
T Consensus 135 ~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll-~~~~v~~vl~GH~H~y~r~~p~~~ 213 (294)
T cd00839 135 GSPQYDWLEADLAKVDRSKTPWIIVMGHRPMYCSNTDHDDCIEGEKMRAALEDLF-YKYGVDLVLSGHVHAYERTCPVYN 213 (294)
T ss_pred CcHHHHHHHHHHHHhcccCCCeEEEEeccCcEecCccccccchhHHHHHHHHHHH-HHhCCCEEEEccceeeEeechhhC
Confidence 23344455555543322 23688889998643211100 0112224555666 58899999999999754321
Q ss_pred -----------ecCcEEEEeCCcCCC
Q psy12823 259 -----------SDGRIIFINASTCDL 273 (295)
Q Consensus 259 -----------~~g~~~~vn~g~~~~ 273 (295)
..+++.+|-.|+++.
T Consensus 214 ~~~~~~~~~~~~~~g~~yiv~G~~G~ 239 (294)
T cd00839 214 GTVVGDCNPYSNPKGPVHIVIGAGGN 239 (294)
T ss_pred CEeccccccccCCCccEEEEECCCcc
Confidence 124677787777765
No 33
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.61 E-value=1.3e-14 Score=119.14 Aligned_cols=130 Identities=22% Similarity=0.269 Sum_probs=83.9
Q ss_pred EEEEEccCCCCCcccc---ccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCCCCCCC
Q psy12823 43 RVVCMSDTHSLTPHIR---FNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELSFDPTFTHPLSSC 119 (295)
Q Consensus 43 rI~~iSDlH~~~~~l~---~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~~~~~~~~~~~~~ 119 (295)
||+++||+|.+...+. ....++|.|+++||+++.+.... +. .. .|+++|+||||.... ...
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~-------~~-~~-~~~~~V~GNhD~~~~---~~~---- 64 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFGDVDLIIHAGDVLYPGPLNE-------LE-LK-APVIAVRGNCDGEVD---FPI---- 64 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcCCCEEEECCccccccccch-------hh-cC-CcEEEEeCCCCCcCC---ccc----
Confidence 6899999999875431 12234999999999998765322 22 22 379999999996410 000
Q ss_pred CCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEEEcceEEEeecCCCCCCCCCcccCchhhhhhhc
Q psy12823 120 RSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYGIKFYGTPWQPEFCKWAFNVPRGEACLSKW 199 (295)
Q Consensus 120 ~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~i~gv~i~G~~~~~~~~~~~~~~~~~~~~~~~~ 199 (295)
..... .+
T Consensus 65 -----------------------------------~p~~~-----~~--------------------------------- 71 (155)
T cd00841 65 -----------------------------------LPEEA-----VL--------------------------------- 71 (155)
T ss_pred -----------------------------------CCceE-----EE---------------------------------
Confidence 00000 00
Q ss_pred cCCCCCccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCCCcEEEeccccCCCCeeecCcEEEEeCCcCCCC
Q psy12823 200 QDIPADTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGITSDGRIIFINASTCDLN 274 (295)
Q Consensus 200 ~~~~~~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~~~~~l~GH~H~~~~~~~~g~~~~vn~g~~~~~ 274 (295)
.+ ++..|+++|.++....+.. .. .+.+ ...++++++|||+|.+.. ...++++++|||+.+..
T Consensus 72 -~~-~g~~i~v~Hg~~~~~~~~~--------~~-~~~~-~~~~~d~vi~GHtH~~~~-~~~~~~~~inpGs~~~~ 133 (155)
T cd00841 72 -EI-GGKRIFLTHGHLYGVKNGL--------DR-LYLA-KEGGADVVLYGHTHIPVI-EKIGGVLLLNPGSLSLP 133 (155)
T ss_pred -EE-CCEEEEEECCcccccccch--------hh-hhhh-hhcCCCEEEECcccCCcc-EEECCEEEEeCCCccCc
Confidence 00 3567999999986442210 11 2233 466789999999999985 45578899999998754
No 34
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=99.60 E-value=4.3e-14 Score=117.74 Aligned_cols=133 Identities=22% Similarity=0.331 Sum_probs=90.1
Q ss_pred ceEEEEEccCCCCCccc-----cccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhc-CCCCcEEEEcCCCCCCCCCCCCC
Q psy12823 41 KVRVVCMSDTHSLTPHI-----RFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGN-LPHKHKLVIAGNHELSFDPTFTH 114 (295)
Q Consensus 41 ~mrI~~iSDlH~~~~~l-----~~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~-l~~~pv~~V~GNHD~~~~~~~~~ 114 (295)
+|||+++||+|...... .....++|+||+|||++......+ +.. +. .++++|.||.|......
T Consensus 1 ~m~ilviSDtH~~~~~~~~~~~~~~~~~~d~vih~GD~~~~~~~~~-------l~~~~~-~~i~~V~GN~D~~~~~~--- 69 (172)
T COG0622 1 MMKILVISDTHGPLRAIEKALKIFNLEKVDAVIHAGDSTSPFTLDA-------LEGGLA-AKLIAVRGNCDGEVDQE--- 69 (172)
T ss_pred CcEEEEEeccCCChhhhhHHHHHhhhcCCCEEEECCCcCCccchHH-------hhcccc-cceEEEEccCCCccccc---
Confidence 59999999999987421 235679999999999988654333 333 33 38999999999641100
Q ss_pred CCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEEEcceEEEeecCCCCCCCCCcccCchhh
Q psy12823 115 PLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYGIKFYGTPWQPEFCKWAFNVPRGEA 194 (295)
Q Consensus 115 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~i~gv~i~G~~~~~~~~~~~~~~~~~~~ 194 (295)
. .++ .+.+
T Consensus 70 ~------------------------------------------------------------~p~-----~~~~------- 77 (172)
T COG0622 70 E------------------------------------------------------------LPE-----ELVL------- 77 (172)
T ss_pred c------------------------------------------------------------CCh-----hHeE-------
Confidence 0 000 0000
Q ss_pred hhhhccCCCCCccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCCCcEEEeccccCCCCeeecCcEEEEeCCcCCC
Q psy12823 195 CLSKWQDIPADTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGITSDGRIIFINASTCDL 273 (295)
Q Consensus 195 ~~~~~~~~~~~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~~~~~l~GH~H~~~~~~~~g~~~~vn~g~~~~ 273 (295)
+ -++.+|+++|..-+.. .......+.+.+...+|++++||+|.+.. .+.++++++|||++..
T Consensus 78 ------~-~~g~ki~l~HGh~~~~---------~~~~~~l~~la~~~~~Dvli~GHTH~p~~-~~~~~i~~vNPGS~s~ 139 (172)
T COG0622 78 ------E-VGGVKIFLTHGHLYFV---------KTDLSLLEYLAKELGADVLIFGHTHKPVA-EKVGGILLVNPGSVSG 139 (172)
T ss_pred ------E-ECCEEEEEECCCcccc---------ccCHHHHHHHHHhcCCCEEEECCCCcccE-EEECCEEEEcCCCcCC
Confidence 0 1467899999865421 11134455555678899999999999884 6678899999999964
No 35
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.58 E-value=9.1e-16 Score=124.94 Aligned_cols=65 Identities=23% Similarity=0.217 Sum_probs=46.8
Q ss_pred eEEEEEccCCCCCccc---------cccCCCCcEEEEcCCCCCCCCHHHHHHHH----HHHhcCCCCcEEEEcCCCCCC
Q psy12823 42 VRVVCMSDTHSLTPHI---------RFNIPDGDIFIHAGDFTRCGGEEEVTEFN----TWIGNLPHKHKLVIAGNHELS 107 (295)
Q Consensus 42 mrI~~iSDlH~~~~~l---------~~~~~~~D~viiaGDl~~~g~~~e~~~~~----~~L~~l~~~pv~~V~GNHD~~ 107 (295)
|||+++||+|+..... .....++|+||++||+++.+......... ....... .|+++++||||.+
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~GNHD~~ 78 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPK-IPVYFILGNHDYY 78 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTT-TTEEEEE-TTSSH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhcc-ccccccccccccc
Confidence 8999999999987532 12357999999999999988865433322 2223333 4999999999975
No 36
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.56 E-value=1.8e-13 Score=121.73 Aligned_cols=163 Identities=17% Similarity=0.131 Sum_probs=91.6
Q ss_pred CCCCcEEEEcCCCCCCCCH-------HHHHHHHHHHhcCC-CCcEEEEcCCCCCCCCCCCCCCCCCCCCCCccccccccC
Q psy12823 61 IPDGDIFIHAGDFTRCGGE-------EEVTEFNTWIGNLP-HKHKLVIAGNHELSFDPTFTHPLSSCRSPSRTMHLINEI 132 (295)
Q Consensus 61 ~~~~D~viiaGDl~~~g~~-------~e~~~~~~~L~~l~-~~pv~~V~GNHD~~~~~~~~~~~~~~~~~~~g~~~~~~~ 132 (295)
..+||+||++|||++.|.. +++.++.+.+..+. ..|+++||||||..+.....
T Consensus 43 ~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~~~------------------- 103 (257)
T cd08163 43 QLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGVV------------------- 103 (257)
T ss_pred hcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCCCC-------------------
Confidence 4589999999999998763 24566666666543 24899999999985322100
Q ss_pred CCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEEEcceEEEeecCCCCCC-C-CCcccCchhhhhhhccCC-CCCccEE
Q psy12823 133 PTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYGIKFYGTPWQPEFC-K-WAFNVPRGEACLSKWQDI-PADTDVL 209 (295)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~i~gv~i~G~~~~~~~~-~-~~~~~~~~~~~~~~~~~~-~~~~~Il 209 (295)
...+ +++.+.+.. .+..+++++++|+++......+ . ......+.+.+.+.+... ++.+.||
T Consensus 104 ------~~~~------~rf~~~Fg~----~~~~~~~~~~~fV~Lds~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~p~IL 167 (257)
T cd08163 104 ------LPVR------QRFEKYFGP----TSRVIDVGNHTFVILDTISLSNKDDPDVYQPPREFLHSFSAMKVKSKPRIL 167 (257)
T ss_pred ------HHHH------HHHHHHhCC----CceEEEECCEEEEEEccccccCCcccccchhHHHHHHhhhhccCCCCcEEE
Confidence 0001 112222211 1234566778888765321000 0 011111122233333333 4568899
Q ss_pred EecCCCCCCCCCCcC-------------CC---ccCcHHHHHHHHhhCCCcEEEeccccCCCCee
Q psy12823 210 ISHTPPIGHGDLCCT-------------GL---RAGCVELLTTVQQRVKPKYHVFGHVHEGYGIT 258 (295)
Q Consensus 210 vtH~pp~~~~D~~~~-------------~~---~~g~~~l~~~l~~~~~~~~~l~GH~H~~~~~~ 258 (295)
++|+|.+...+..+. +. ..=+++..+.|.+..+|.++++||.|......
T Consensus 168 l~H~Plyr~~~~~cg~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~~~ 232 (257)
T cd08163 168 LTHVPLYRPPNTSCGPLRESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCEVV 232 (257)
T ss_pred EeccccccCCCCCCCCccccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCccceeE
Confidence 999998743221110 00 01134566666678899999999999988654
No 37
>PLN02533 probable purple acid phosphatase
Probab=99.51 E-value=3.9e-13 Score=127.76 Aligned_cols=235 Identities=16% Similarity=0.145 Sum_probs=120.3
Q ss_pred CCCCCCChhHHHHhhccc-eeeeeeecCCCCCCCCCCceEEEEEccCCCCCcc---c-cccCCCCcEEEEcCCCCCCCCH
Q psy12823 5 IHPLTQNPTAAWKELSGS-QKVIKINVQPPKTQVDPKKVRVVCMSDTHSLTPH---I-RFNIPDGDIFIHAGDFTRCGGE 79 (295)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~mrI~~iSDlH~~~~~---l-~~~~~~~D~viiaGDl~~~g~~ 79 (295)
|..|.-+-+|+|+.-..+ ..+-..+..| ...+.||++++|+|..... + .....++|+||++||++..+..
T Consensus 107 l~~L~p~T~Y~Yrvg~~~~s~~~~F~T~p-----~~~~~~f~v~GDlG~~~~~~~tl~~i~~~~pD~vl~~GDl~y~~~~ 181 (427)
T PLN02533 107 IGPLKPNTVYYYKCGGPSSTQEFSFRTPP-----SKFPIKFAVSGDLGTSEWTKSTLEHVSKWDYDVFILPGDLSYANFY 181 (427)
T ss_pred eCCCCCCCEEEEEECCCCCccceEEECCC-----CCCCeEEEEEEeCCCCcccHHHHHHHHhcCCCEEEEcCccccccch
Confidence 345555666666553211 1222222222 2368999999999864322 1 1245689999999999975432
Q ss_pred -HHHHHHHHHHhcCC-CCcEEEEcCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCC
Q psy12823 80 -EEVTEFNTWIGNLP-HKHKLVIAGNHELSFDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTN 157 (295)
Q Consensus 80 -~e~~~~~~~L~~l~-~~pv~~V~GNHD~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 157 (295)
..+..+.+.++.+. ..|++.++||||..............|..++.... .+. ....+
T Consensus 182 ~~~wd~f~~~i~~l~s~~P~m~~~GNHE~~~~~~~~~~~f~~y~~rf~mP~--------------------~~~-g~~~~ 240 (427)
T PLN02533 182 QPLWDTFGRLVQPLASQRPWMVTHGNHELEKIPILHPEKFTAYNARWRMPF--------------------EES-GSTSN 240 (427)
T ss_pred HHHHHHHHHHhhhHhhcCceEEeCccccccccccccCcCccchhhcccCCc--------------------ccc-CCCCC
Confidence 23344555555432 24999999999975321100000000001111000 000 00001
Q ss_pred eEEccCCcEEEcceEEEeecCCCCCCCCCcccCchhhhhhhccCCC--CC-ccEEEecCCCCCCCCCCc-CCCccCc-HH
Q psy12823 158 CTYLQDEERILYGIKFYGTPWQPEFCKWAFNVPRGEACLSKWQDIP--AD-TDVLISHTPPIGHGDLCC-TGLRAGC-VE 232 (295)
Q Consensus 158 ~~~L~~~~~~i~gv~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~IlvtH~pp~~~~D~~~-~~~~~g~-~~ 232 (295)
.. -+++++++.|+.++.... +.....+.+++.+.+++.. .. ..|++.|+|++....... .....+. ..
T Consensus 241 ~y----YSfd~g~vhfI~Lds~~~---~~~~~~Q~~WLe~dL~~~~r~~~pwiIv~~H~P~y~s~~~~~~~~~~~~~r~~ 313 (427)
T PLN02533 241 LY----YSFNVYGVHIIMLGSYTD---FEPGSEQYQWLENNLKKIDRKTTPWVVAVVHAPWYNSNEAHQGEKESVGMKES 313 (427)
T ss_pred ce----EEEEECCEEEEEEeCCcc---ccCchHHHHHHHHHHHhhcccCCCEEEEEeCCCeeecccccCCcchhHHHHHH
Confidence 11 135677888887653221 1112334445555554432 22 357889999875421110 0011122 24
Q ss_pred HHHHHHhhCCCcEEEeccccCCCCee-------ecCcEEEEeCCcCCC
Q psy12823 233 LLTTVQQRVKPKYHVFGHVHEGYGIT-------SDGRIIFINASTCDL 273 (295)
Q Consensus 233 l~~~l~~~~~~~~~l~GH~H~~~~~~-------~~g~~~~vn~g~~~~ 273 (295)
+.+++ .++++++++|||+|...... ...++++|..|.++.
T Consensus 314 le~Ll-~~~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~ 360 (427)
T PLN02533 314 METLL-YKARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGGN 360 (427)
T ss_pred HHHHH-HHhCCcEEEecceecccccccccCCccCCCCCEEEEeCCCcc
Confidence 55566 58999999999999643211 123567777777654
No 38
>PHA02546 47 endonuclease subunit; Provisional
Probab=99.48 E-value=1.2e-12 Score=121.29 Aligned_cols=164 Identities=16% Similarity=0.156 Sum_probs=90.1
Q ss_pred eEEEEEccCCCCCcc----c-------------cccCCCCcEEEEcCCCCCCCC--H-HHHHH----HHHHHhcCCCCcE
Q psy12823 42 VRVVCMSDTHSLTPH----I-------------RFNIPDGDIFIHAGDFTRCGG--E-EEVTE----FNTWIGNLPHKHK 97 (295)
Q Consensus 42 mrI~~iSDlH~~~~~----l-------------~~~~~~~D~viiaGDl~~~g~--~-~e~~~----~~~~L~~l~~~pv 97 (295)
|||+++||+|++... + .....++|+|+++||+++... . ..... +++.|.+.+ .||
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~g-i~v 79 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAG-ITL 79 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCC-CeE
Confidence 899999999997432 1 023568999999999998742 1 22111 233454444 489
Q ss_pred EEEcCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccC-CcEEEcceEEEee
Q psy12823 98 LVIAGNHELSFDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQD-EERILYGIKFYGT 176 (295)
Q Consensus 98 ~~V~GNHD~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~-~~~~i~gv~i~G~ 176 (295)
++|+||||.+........ ...+ +.....++.+.+. ..+.+.|+.+.+.
T Consensus 80 ~~I~GNHD~~~~~~~~~~---------------------~~~~----------ll~~~~~v~v~~~~~~v~i~g~~i~~l 128 (340)
T PHA02546 80 HVLVGNHDMYYKNTIRPN---------------------APTE----------LLGQYDNITVIDEPTTVDFDGCSIDLI 128 (340)
T ss_pred EEEccCCCcccccccccC---------------------chHH----------HHhhCCCEEEeCCceEEEECCEEEEEC
Confidence 999999997532111000 0001 1112345655543 4567788888888
Q ss_pred cCCCCCCCCCcccCchhhhhhhccCCCCCccEEEecCCCCCC-C-CCCcCCCccCc-HHHHHHHHhhCCCcEEEeccccC
Q psy12823 177 PWQPEFCKWAFNVPRGEACLSKWQDIPADTDVLISHTPPIGH-G-DLCCTGLRAGC-VELLTTVQQRVKPKYHVFGHVHE 253 (295)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlvtH~pp~~~-~-D~~~~~~~~g~-~~l~~~l~~~~~~~~~l~GH~H~ 253 (295)
||... ...+.+.+.+. +..+.|++.|....+. . .... ...|. .+ .+ .+.++++.||+|.
T Consensus 129 P~~~~--------~~~~~~~~~l~--~~~~~ill~H~~v~g~~~~~g~~--~~~~~~~~---~~---~~fdyvALGHiH~ 190 (340)
T PHA02546 129 PWICK--------ENTEEILEFIK--NSKSEYCVGHWELNGFYFYKGMK--SDHGLDPD---FL---KKYKQVWSGHFHT 190 (340)
T ss_pred CCCCH--------HHHHHHHHHhc--cCCCcEEEEeeEEecCcccCCCc--cccCCChh---Hh---ccCCEEeeccccc
Confidence 86421 01112222221 2457899999643321 0 0000 00111 11 22 2479999999998
Q ss_pred CC
Q psy12823 254 GY 255 (295)
Q Consensus 254 ~~ 255 (295)
..
T Consensus 191 ~~ 192 (340)
T PHA02546 191 IS 192 (340)
T ss_pred Cc
Confidence 65
No 39
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.47 E-value=2.6e-13 Score=119.80 Aligned_cols=66 Identities=17% Similarity=0.174 Sum_probs=44.3
Q ss_pred eEEEEEccCCCCCcc------c----cccCCCCcEEEEcCCCCCCC--C---HHHHHHHHHHHhcCC--CCcEEEEcCCC
Q psy12823 42 VRVVCMSDTHSLTPH------I----RFNIPDGDIFIHAGDFTRCG--G---EEEVTEFNTWIGNLP--HKHKLVIAGNH 104 (295)
Q Consensus 42 mrI~~iSDlH~~~~~------l----~~~~~~~D~viiaGDl~~~g--~---~~e~~~~~~~L~~l~--~~pv~~V~GNH 104 (295)
|||+++||+|++... + .....++|.|+++||+++.. . ......+.+.|+++. ..|+++|+|||
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNH 80 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNR 80 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 899999999987532 1 11335899999999999741 1 122233444444332 14899999999
Q ss_pred CCC
Q psy12823 105 ELS 107 (295)
Q Consensus 105 D~~ 107 (295)
|..
T Consensus 81 D~~ 83 (241)
T PRK05340 81 DFL 83 (241)
T ss_pred chh
Confidence 975
No 40
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=99.47 E-value=1.8e-12 Score=121.82 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=49.0
Q ss_pred CceEEEEEccCCCCCcc------------c-----cccCCCCcEEEEcCCCCCCCCH--HHHHHHHHHHhc---------
Q psy12823 40 KKVRVVCMSDTHSLTPH------------I-----RFNIPDGDIFIHAGDFTRCGGE--EEVTEFNTWIGN--------- 91 (295)
Q Consensus 40 ~~mrI~~iSDlH~~~~~------------l-----~~~~~~~D~viiaGDl~~~g~~--~e~~~~~~~L~~--------- 91 (295)
..|||+++||+|++... + .....++|+||++||+++...+ .....+++.|++
T Consensus 2 ~~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~~ 81 (405)
T TIGR00583 2 DTIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPCE 81 (405)
T ss_pred CceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCccc
Confidence 57999999999997421 1 1235689999999999997653 344455555553
Q ss_pred ---------------------------CCCCcEEEEcCCCCCC
Q psy12823 92 ---------------------------LPHKHKLVIAGNHELS 107 (295)
Q Consensus 92 ---------------------------l~~~pv~~V~GNHD~~ 107 (295)
. ..||++|.||||..
T Consensus 82 ~~~Lsd~~~~~~~~~~~~~ny~d~~~~~-~iPVf~I~GNHD~p 123 (405)
T TIGR00583 82 LEFLSDASVVFNQSAFGNVNYEDPNINV-AIPVFSIHGNHDDP 123 (405)
T ss_pred hhhccchhhhcccccccccccccccccC-CCCEEEEcCCCCCc
Confidence 1 24999999999975
No 41
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.45 E-value=9.5e-13 Score=118.25 Aligned_cols=79 Identities=18% Similarity=0.144 Sum_probs=49.4
Q ss_pred hhhhhhhccCCCCCccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCCCcEEEeccccCCCCeeec-CcEEEEeCCc
Q psy12823 192 GEACLSKWQDIPADTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGITSD-GRIIFINAST 270 (295)
Q Consensus 192 ~~~~~~~~~~~~~~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~~~~~l~GH~H~~~~~~~~-g~~~~vn~g~ 270 (295)
.+++.+.+++.+.+..|+++|+|+....... ........+.+++ +++++++++|||+|........ .++.++.+|+
T Consensus 154 ~~wL~~~L~~~~~~~~iv~~H~P~~~~~~~~--~~~~~~~~l~~l~-~~~~v~~vl~GH~H~~~~~~~~~~~~~~i~~G~ 230 (277)
T cd07378 154 LAWLEKTLAASTADWKIVVGHHPIYSSGEHG--PTSCLVDRLLPLL-KKYKVDAYLSGHDHNLQHIKDDGSGTSFVVSGA 230 (277)
T ss_pred HHHHHHHHHhcCCCeEEEEeCccceeCCCCC--CcHHHHHHHHHHH-HHcCCCEEEeCCcccceeeecCCCCcEEEEeCC
Confidence 3445555554445678999999987432111 0011124566677 5889999999999987754443 3666676666
Q ss_pred CCC
Q psy12823 271 CDL 273 (295)
Q Consensus 271 ~~~ 273 (295)
++.
T Consensus 231 ~~~ 233 (277)
T cd07378 231 GSK 233 (277)
T ss_pred Ccc
Confidence 554
No 42
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=99.42 E-value=5.3e-13 Score=126.07 Aligned_cols=65 Identities=25% Similarity=0.300 Sum_probs=47.3
Q ss_pred eEEEEEccCCCCCcc------------c-----cccCCCCcEEEEcCCCCCCCCHHH-----HHHHHHHHhcCCCCcEEE
Q psy12823 42 VRVVCMSDTHSLTPH------------I-----RFNIPDGDIFIHAGDFTRCGGEEE-----VTEFNTWIGNLPHKHKLV 99 (295)
Q Consensus 42 mrI~~iSDlH~~~~~------------l-----~~~~~~~D~viiaGDl~~~g~~~e-----~~~~~~~L~~l~~~pv~~ 99 (295)
|||+|+||+|++... + .....++|+||++||+++.+.+.. +.+++..|++.. .|+++
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~-~~v~~ 79 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTG-CQLVV 79 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHHhcC-CcEEE
Confidence 899999999997421 1 023579999999999999765322 233445555554 48999
Q ss_pred EcCCCCCC
Q psy12823 100 IAGNHELS 107 (295)
Q Consensus 100 V~GNHD~~ 107 (295)
|+||||.+
T Consensus 80 I~GNHD~~ 87 (407)
T PRK10966 80 LAGNHDSV 87 (407)
T ss_pred EcCCCCCh
Confidence 99999975
No 43
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=99.42 E-value=7.3e-13 Score=124.92 Aligned_cols=66 Identities=23% Similarity=0.267 Sum_probs=50.8
Q ss_pred eEEEEEccCCCCCccc------------------cccCCCCcEEEEcCCCCCCCCH--HHHHHHHHHHhcCC--CCcEEE
Q psy12823 42 VRVVCMSDTHSLTPHI------------------RFNIPDGDIFIHAGDFTRCGGE--EEVTEFNTWIGNLP--HKHKLV 99 (295)
Q Consensus 42 mrI~~iSDlH~~~~~l------------------~~~~~~~D~viiaGDl~~~g~~--~e~~~~~~~L~~l~--~~pv~~ 99 (295)
|||+|+||+|++...+ .....++|+||+|||+++.+.+ .....+.+.|+++. ..|||+
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~ 80 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVV 80 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEE
Confidence 8999999999993221 1234689999999999998763 45556777777765 259999
Q ss_pred EcCCCCCC
Q psy12823 100 IAGNHELS 107 (295)
Q Consensus 100 V~GNHD~~ 107 (295)
|+||||..
T Consensus 81 I~GNHD~~ 88 (390)
T COG0420 81 IAGNHDSP 88 (390)
T ss_pred ecCCCCch
Confidence 99999975
No 44
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.41 E-value=7.7e-13 Score=117.57 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=46.1
Q ss_pred eEEEEEccCCCCCcc------------c-----cccCCCCcEEEEcCCCCCCCCHHH-----HHHHHHHHhcCCCCcEEE
Q psy12823 42 VRVVCMSDTHSLTPH------------I-----RFNIPDGDIFIHAGDFTRCGGEEE-----VTEFNTWIGNLPHKHKLV 99 (295)
Q Consensus 42 mrI~~iSDlH~~~~~------------l-----~~~~~~~D~viiaGDl~~~g~~~e-----~~~~~~~L~~l~~~pv~~ 99 (295)
|||+++||+|++... + .....++|+|+++||+++...+.. +.++++.|.+....||++
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~ 80 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVV 80 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 899999999997531 1 013458999999999999765322 223344444433148999
Q ss_pred EcCCCCCC
Q psy12823 100 IAGNHELS 107 (295)
Q Consensus 100 V~GNHD~~ 107 (295)
|+||||..
T Consensus 81 i~GNHD~~ 88 (253)
T TIGR00619 81 ISGNHDSA 88 (253)
T ss_pred EccCCCCh
Confidence 99999975
No 45
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.33 E-value=9.6e-12 Score=112.96 Aligned_cols=186 Identities=17% Similarity=0.181 Sum_probs=93.3
Q ss_pred CCCcEEEEcCCCCCCCCHHH---------HHHHHHHHhcC-CCCcEEEEcCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q psy12823 62 PDGDIFIHAGDFTRCGGEEE---------VTEFNTWIGNL-PHKHKLVIAGNHELSFDPTFTHPLSSCRSPSRTMHLINE 131 (295)
Q Consensus 62 ~~~D~viiaGDl~~~g~~~e---------~~~~~~~L~~l-~~~pv~~V~GNHD~~~~~~~~~~~~~~~~~~~g~~~~~~ 131 (295)
.++|+||++||++..+..+. .+.+.+.+++. +..||+.++||||..-...+... .+
T Consensus 67 ~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~~~~~~~--------~~------ 132 (296)
T cd00842 67 PKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPVNQFPPN--------NS------ 132 (296)
T ss_pred CCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcccccCCc--------cc------
Confidence 48999999999998765322 23455556553 44599999999998532211000 00
Q ss_pred CCCCCCCchhhHHH----HHhhhhhhccCCeEEccCCcEE-EcceEEEeecCCCCC--CCCCc------ccCchhhhhhh
Q psy12823 132 IPTLGLPRDSLTEA----VKARNMRDRLTNCTYLQDEERI-LYGIKFYGTPWQPEF--CKWAF------NVPRGEACLSK 198 (295)
Q Consensus 132 ~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~L~~~~~~-i~gv~i~G~~~~~~~--~~~~~------~~~~~~~~~~~ 198 (295)
.+...+.+.+. ...+.......+..| +.. ..+++|+++...... ..+.. ...+.+++.+.
T Consensus 133 ---~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY----~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~ 205 (296)
T cd00842 133 ---PSWLYDALAELWKSWLPEEAEETFKKGGYY----SVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDE 205 (296)
T ss_pred ---ccHHHHHHHHHHHhhcCHHHHHHhhcceEE----EEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHH
Confidence 00001111110 000000000011111 122 457888886521100 11111 11233444444
Q ss_pred ccCCC--CCccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCC--CcEEEeccccCCCCeeec--------CcEEEE
Q psy12823 199 WQDIP--ADTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVK--PKYHVFGHVHEGYGITSD--------GRIIFI 266 (295)
Q Consensus 199 ~~~~~--~~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~--~~~~l~GH~H~~~~~~~~--------g~~~~v 266 (295)
+++.. ....++++|+||...... ........+.+++ +++. +..+++||+|........ ....++
T Consensus 206 L~~a~~~~~~v~I~~HiPp~~~~~~---~~~~~~~~~~~ii-~~y~~~i~~~~~GH~H~d~~~~~~~~~~~~~~~~~~~~ 281 (296)
T cd00842 206 LQEAEQAGEKVWIIGHIPPGVNSYD---TLENWSERYLQII-NRYSDTIAGQFFGHTHRDEFRVFYDDNDTGEPINVALI 281 (296)
T ss_pred HHHHHHCCCeEEEEeccCCCCcccc---cchHHHHHHHHHH-HHHHHhhheeeecccccceEEEEeCCCCCCCceEEEEe
Confidence 44331 245678999999633111 0012335677777 4664 788999999997643322 345667
Q ss_pred eCCcCC
Q psy12823 267 NASTCD 272 (295)
Q Consensus 267 n~g~~~ 272 (295)
.||...
T Consensus 282 ~psitp 287 (296)
T cd00842 282 APSVTP 287 (296)
T ss_pred cCccCc
Confidence 777653
No 46
>PRK04036 DNA polymerase II small subunit; Validated
Probab=99.33 E-value=1.4e-10 Score=112.53 Aligned_cols=71 Identities=24% Similarity=0.354 Sum_probs=51.2
Q ss_pred CCCCceEEEEEccCCCCCccc---------c-cc---------CCCCcEEEEcCCCCCCCC--------------HHHHH
Q psy12823 37 VDPKKVRVVCMSDTHSLTPHI---------R-FN---------IPDGDIFIHAGDFTRCGG--------------EEEVT 83 (295)
Q Consensus 37 ~~~~~mrI~~iSDlH~~~~~l---------~-~~---------~~~~D~viiaGDl~~~g~--------------~~e~~ 83 (295)
.....++|+++||+|++.... . .+ ..++|.||++||+++... .+.++
T Consensus 239 ~~~~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~ 318 (504)
T PRK04036 239 TKDEKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYE 318 (504)
T ss_pred cCCCccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHH
Confidence 446779999999999876421 0 11 457999999999997411 12345
Q ss_pred HHHHHHhcCCC-CcEEEEcCCCCCC
Q psy12823 84 EFNTWIGNLPH-KHKLVIAGNHELS 107 (295)
Q Consensus 84 ~~~~~L~~l~~-~pv~~V~GNHD~~ 107 (295)
.+.++|.+++. .||+++|||||..
T Consensus 319 ~l~~~L~~L~~~i~V~~ipGNHD~~ 343 (504)
T PRK04036 319 AAAEYLKQIPEDIKIIISPGNHDAV 343 (504)
T ss_pred HHHHHHHhhhcCCeEEEecCCCcch
Confidence 67778887752 3899999999975
No 47
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.31 E-value=9.8e-12 Score=107.23 Aligned_cols=61 Identities=23% Similarity=0.249 Sum_probs=46.9
Q ss_pred eEEEEEccCCCCCcccc-----cc-CCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy12823 42 VRVVCMSDTHSLTPHIR-----FN-IPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELS 107 (295)
Q Consensus 42 mrI~~iSDlH~~~~~l~-----~~-~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~ 107 (295)
+||+++||+|++...+. .. ..++|.++++||+++.|.... ++++.|.+ .++++|.||||..
T Consensus 1 ~ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~--~~~~~l~~---~~~~~v~GNhe~~ 67 (207)
T cd07424 1 GRDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESL--ACLELLLE---PWFHAVRGNHEQM 67 (207)
T ss_pred CCEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCHH--HHHHHHhc---CCEEEeECCChHH
Confidence 47999999999876542 12 246899999999999886443 56677765 3689999999975
No 48
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=99.28 E-value=3.9e-11 Score=98.95 Aligned_cols=47 Identities=23% Similarity=0.363 Sum_probs=31.5
Q ss_pred CCCCcEEEEcCCCCCCCCH---HHHHHHHHHHhc----CCCCcEEEEcCCCCCC
Q psy12823 61 IPDGDIFIHAGDFTRCGGE---EEVTEFNTWIGN----LPHKHKLVIAGNHELS 107 (295)
Q Consensus 61 ~~~~D~viiaGDl~~~g~~---~e~~~~~~~L~~----l~~~pv~~V~GNHD~~ 107 (295)
..+||.|+++||+++.+.. .++...++.+.+ ....|+++|+||||..
T Consensus 36 ~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 36 LLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIG 89 (156)
T ss_pred hcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcC
Confidence 4689999999999987642 233232222222 1224899999999974
No 49
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=99.27 E-value=4.8e-11 Score=105.40 Aligned_cols=63 Identities=25% Similarity=0.371 Sum_probs=44.1
Q ss_pred EEEccCCCCCcc--------c----ccc---CCCCcEEEEcCCCCCCCC--------------HHHHHHHHHHHhcCCC-
Q psy12823 45 VCMSDTHSLTPH--------I----RFN---IPDGDIFIHAGDFTRCGG--------------EEEVTEFNTWIGNLPH- 94 (295)
Q Consensus 45 ~~iSDlH~~~~~--------l----~~~---~~~~D~viiaGDl~~~g~--------------~~e~~~~~~~L~~l~~- 94 (295)
++|||+|++... + ... ..++|.||++||+++... .+.++.+.++|+++..
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 81 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPSH 81 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcccC
Confidence 689999986542 1 111 136799999999998521 1234556777777752
Q ss_pred CcEEEEcCCCCCC
Q psy12823 95 KHKLVIAGNHELS 107 (295)
Q Consensus 95 ~pv~~V~GNHD~~ 107 (295)
.+|++++||||..
T Consensus 82 ~~v~~ipGNHD~~ 94 (243)
T cd07386 82 IKIIIIPGNHDAV 94 (243)
T ss_pred CeEEEeCCCCCcc
Confidence 4899999999975
No 50
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.27 E-value=7.4e-11 Score=103.48 Aligned_cols=62 Identities=15% Similarity=0.145 Sum_probs=40.7
Q ss_pred EEEccCCCCCcc------c-c---ccCCCCcEEEEcCCCCCCC-----CHH---HHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy12823 45 VCMSDTHSLTPH------I-R---FNIPDGDIFIHAGDFTRCG-----GEE---EVTEFNTWIGNLPHKHKLVIAGNHEL 106 (295)
Q Consensus 45 ~~iSDlH~~~~~------l-~---~~~~~~D~viiaGDl~~~g-----~~~---e~~~~~~~L~~l~~~pv~~V~GNHD~ 106 (295)
+++||+|++... + + ....++|+|+++||+++.. ... ++.++++.|.+.. .||++|+||||.
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~-~~v~~v~GNHD~ 80 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEARKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQG-VPCYFMHGNRDF 80 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhhccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCC-CeEEEEcCCCch
Confidence 799999987532 1 1 1123799999999999841 122 2233344444433 489999999997
Q ss_pred C
Q psy12823 107 S 107 (295)
Q Consensus 107 ~ 107 (295)
+
T Consensus 81 ~ 81 (231)
T TIGR01854 81 L 81 (231)
T ss_pred h
Confidence 5
No 51
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.27 E-value=5.4e-11 Score=93.06 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=42.9
Q ss_pred EEEccCCCCCccc-------cccCCCCcEEEEcCCCCCCCCHHHHHHHH--HHHhcCCCCcEEEEcCCCC
Q psy12823 45 VCMSDTHSLTPHI-------RFNIPDGDIFIHAGDFTRCGGEEEVTEFN--TWIGNLPHKHKLVIAGNHE 105 (295)
Q Consensus 45 ~~iSDlH~~~~~l-------~~~~~~~D~viiaGDl~~~g~~~e~~~~~--~~L~~l~~~pv~~V~GNHD 105 (295)
+++||+|...... .....++|+||++||+++.+......... ..+.+.. .|+++++||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~GNHD 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLG-IPVYVVPGNHD 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCCEEEECCcccCCCCCchHHHHHHHHHhhcCC-CCEEEeCCCce
Confidence 4799999987543 12446999999999999987654433332 3334443 48999999999
No 52
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=99.20 E-value=1.6e-10 Score=96.48 Aligned_cols=59 Identities=31% Similarity=0.353 Sum_probs=44.3
Q ss_pred EEEccCCCCCccc----------------------cccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcC
Q psy12823 45 VCMSDTHSLTPHI----------------------RFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAG 102 (295)
Q Consensus 45 ~~iSDlH~~~~~l----------------------~~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~G 102 (295)
.++||+|++.... .....++|.|+++||+++.+....+ .+++++++. |+++|+|
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~~~---~~~l~~~~~-~~~~v~G 77 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKAGTE---LELLSRLNG-RKHLIKG 77 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCChHHH---HHHHHhCCC-CeEEEeC
Confidence 5899999986521 0123478999999999998775543 667777764 8999999
Q ss_pred CCCCC
Q psy12823 103 NHELS 107 (295)
Q Consensus 103 NHD~~ 107 (295)
|||..
T Consensus 78 NHD~~ 82 (168)
T cd07390 78 NHDSS 82 (168)
T ss_pred CCCch
Confidence 99964
No 53
>KOG2863|consensus
Probab=99.18 E-value=6.4e-11 Score=106.39 Aligned_cols=179 Identities=20% Similarity=0.333 Sum_probs=112.0
Q ss_pred eEEEEEccCCCCCcccc-----c---cCCCCcEEEEcCCCCCCCC---------HHHHHHHHHHHh---c-CCC-CcEEE
Q psy12823 42 VRVVCMSDTHSLTPHIR-----F---NIPDGDIFIHAGDFTRCGG---------EEEVTEFNTWIG---N-LPH-KHKLV 99 (295)
Q Consensus 42 mrI~~iSDlH~~~~~l~-----~---~~~~~D~viiaGDl~~~g~---------~~e~~~~~~~L~---~-l~~-~pv~~ 99 (295)
|||++-+-.|+...++. . ...++|++++|||+-.-.+ +..|++.-++.+ . ... .+++|
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF 80 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF 80 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence 89999999999887651 1 2358999999999854322 234444444443 2 221 25699
Q ss_pred EcCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccC-CcEEEcceEEEeecC
Q psy12823 100 IAGNHELSFDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQD-EERILYGIKFYGTPW 178 (295)
Q Consensus 100 V~GNHD~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~-~~~~i~gv~i~G~~~ 178 (295)
|-|||+.. .. +.|+|. +.|. .+|+.||.. +++.++|++|.|++.
T Consensus 81 IGGNHEAs---ny----------------L~eLpy--------------GGwV--ApNIyYlG~agVv~~~gvRIggiSG 125 (456)
T KOG2863|consen 81 IGGNHEAS---NY----------------LQELPY--------------GGWV--APNIYYLGYAGVVNFGGVRIGGISG 125 (456)
T ss_pred ecCchHHH---HH----------------HHhccc--------------Ccee--ccceEEeeecceEEECCEEEeeccc
Confidence 99999963 11 011110 1231 468899975 567899999999773
Q ss_pred --CC-CCCC----C-CcccCchhhhh-------hhccCCCCCccEEEecCCCCCCCCCCc---------------CCCcc
Q psy12823 179 --QP-EFCK----W-AFNVPRGEACL-------SKWQDIPADTDVLISHTPPIGHGDLCC---------------TGLRA 228 (295)
Q Consensus 179 --~~-~~~~----~-~~~~~~~~~~~-------~~~~~~~~~~~IlvtH~pp~~~~D~~~---------------~~~~~ 228 (295)
.. .|.. | .+....+..+. ..+.++....+|+++|..|.++.+... .....
T Consensus 126 I~k~~dy~kgh~E~ppyn~stiRsiYHvR~~dV~~Lkqlk~piDIfLSHDWP~GI~~yGd~~~LLr~KPFFrqeie~~~L 205 (456)
T KOG2863|consen 126 IYKEHDYRKGHFEWPPYNNSTIRSIYHVRISDVAKLKQLKHPIDIFLSHDWPRGIYYYGDKKQLLRLKPFFRQEIEEGKL 205 (456)
T ss_pred hhhhhhcccCCCCCCCccchhhhhhhhhhhhhhHHHHhhcCcceEEeecCCCcchhhcCCHHHHHhcCcHHHHHHhcCCc
Confidence 21 1211 1 12221111111 122345567899999999987632210 12357
Q ss_pred CcHHHHHHHHhhCCCcEEEeccccCCCC
Q psy12823 229 GCVELLTTVQQRVKPKYHVFGHVHEGYG 256 (295)
Q Consensus 229 g~~~l~~~l~~~~~~~~~l~GH~H~~~~ 256 (295)
||+.+.++| ++.+|.||++.|.|.-+.
T Consensus 206 GSp~~~eLL-~~LkP~yWfsAHLH~KFa 232 (456)
T KOG2863|consen 206 GSPALEELL-EDLKPQYWFSAHLHVKFA 232 (456)
T ss_pred CChHHHHHH-HHhCcchhhhhhHhhHHh
Confidence 999888888 689999999999998764
No 54
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.17 E-value=1e-10 Score=101.65 Aligned_cols=60 Identities=22% Similarity=0.361 Sum_probs=46.5
Q ss_pred EEEEEccCCCCCcccc-----cc-CCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy12823 43 RVVCMSDTHSLTPHIR-----FN-IPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELS 107 (295)
Q Consensus 43 rI~~iSDlH~~~~~l~-----~~-~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~ 107 (295)
||++|||+|++...++ .. ..+.|.++++||++++|.... +.++.|++ ..+++|.||||..
T Consensus 16 ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~--~~l~~l~~---~~~~~v~GNHE~~ 81 (218)
T PRK09968 16 HIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESL--NVLRLLNQ---PWFISVKGNHEAM 81 (218)
T ss_pred eEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHH--HHHHHHhh---CCcEEEECchHHH
Confidence 8999999999987652 12 247899999999999987443 56677665 2478999999964
No 55
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=99.12 E-value=3e-10 Score=95.03 Aligned_cols=48 Identities=21% Similarity=0.310 Sum_probs=32.9
Q ss_pred cCCCCcEEEEcCCCCCCCCH---HHHHHHHHHHhc----CC----CCcEEEEcCCCCCC
Q psy12823 60 NIPDGDIFIHAGDFTRCGGE---EEVTEFNTWIGN----LP----HKHKLVIAGNHELS 107 (295)
Q Consensus 60 ~~~~~D~viiaGDl~~~g~~---~e~~~~~~~L~~----l~----~~pv~~V~GNHD~~ 107 (295)
...+||.||++||+++.+.. +++.+..+.+++ .. ..|+++|+||||..
T Consensus 42 ~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g 100 (171)
T cd07384 42 QRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIG 100 (171)
T ss_pred HhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccC
Confidence 45699999999999997652 334333333322 21 35899999999975
No 56
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=99.11 E-value=5.6e-10 Score=94.64 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=33.2
Q ss_pred cCCCCcEEEEcCCCCCCCCHH---HHHHHHHHHhc----CCCCcEEEEcCCCCCC
Q psy12823 60 NIPDGDIFIHAGDFTRCGGEE---EVTEFNTWIGN----LPHKHKLVIAGNHELS 107 (295)
Q Consensus 60 ~~~~~D~viiaGDl~~~g~~~---e~~~~~~~L~~----l~~~pv~~V~GNHD~~ 107 (295)
+..+||+|+++|||+|.|... ++.+.++.+++ -+..|+++|+||||..
T Consensus 39 ~~l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG 93 (195)
T cd08166 39 NFVQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIG 93 (195)
T ss_pred hccCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcC
Confidence 446899999999999998742 23333323332 2234899999999974
No 57
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.09 E-value=6.6e-10 Score=96.63 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=48.5
Q ss_pred CceEEEEEccCCCCCcccc-----ccC-CCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy12823 40 KKVRVVCMSDTHSLTPHIR-----FNI-PDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELS 107 (295)
Q Consensus 40 ~~mrI~~iSDlH~~~~~l~-----~~~-~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~ 107 (295)
...||.+|||+|++...|. ... .+.|.++++||++++|.... +++++|.+. .+++|.||||..
T Consensus 15 ~~~ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~--~vl~~l~~~---~~~~v~GNHE~~ 83 (218)
T PRK11439 15 QWRHIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSL--RCLQLLEEH---WVRAVRGNHEQM 83 (218)
T ss_pred CCCeEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHH--HHHHHHHcC---CceEeeCchHHH
Confidence 3458999999999987652 222 36899999999999987544 677777763 468999999964
No 58
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=99.06 E-value=8.7e-10 Score=90.01 Aligned_cols=49 Identities=27% Similarity=0.349 Sum_probs=36.6
Q ss_pred ccEEEecCCCCCCC--CCCc---CCCccCcHHHHHHHHhhCCCcEEEeccccCCC
Q psy12823 206 TDVLISHTPPIGHG--DLCC---TGLRAGCVELLTTVQQRVKPKYHVFGHVHEGY 255 (295)
Q Consensus 206 ~~IlvtH~pp~~~~--D~~~---~~~~~g~~~l~~~l~~~~~~~~~l~GH~H~~~ 255 (295)
.+||+||.||.++. +... ...+.|++.+.+++ ++.+|+|++|||.|.-+
T Consensus 70 ~DILlTh~wP~gi~~~~~~~~~~~~~~~GS~~i~~l~-~~lkPrYhf~gh~~~fy 123 (150)
T cd07380 70 VDILLTSEWPKGISKLSKVPFEETLLICGSDLIAELA-KKLKPRYHFAGLEGVFY 123 (150)
T ss_pred CCEEECCCCchhhhhhCCCcccccccCCCCHHHHHHH-HHcCCCeEeecCCCceE
Confidence 35889999998763 2211 23578998888877 68999999999998633
No 59
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.05 E-value=9.8e-09 Score=97.30 Aligned_cols=107 Identities=15% Similarity=-0.049 Sum_probs=67.5
Q ss_pred EE-EcceEEEeecCCCCCCCC--CcccCchhhhhhhccCCCCCccEEEecCCCCCCC----CCCc-CCCccCcHHHHHHH
Q psy12823 166 RI-LYGIKFYGTPWQPEFCKW--AFNVPRGEACLSKWQDIPADTDVLISHTPPIGHG----DLCC-TGLRAGCVELLTTV 237 (295)
Q Consensus 166 ~~-i~gv~i~G~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~IlvtH~pp~~~~----D~~~-~~~~~g~~~l~~~l 237 (295)
++ .++++|++++.+...+.+ .....+.+++.+.+++.+++..|+++||||.... |... ........+|.++|
T Consensus 296 Fd~~ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~a~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~n~~eLldLL 375 (496)
T TIGR03767 296 FDIAGGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRASSDTLFVLFSHHTSWSMVNELTDPVDPGEKRHLGTELVSLL 375 (496)
T ss_pred EEeECCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhcCCCCCEEEEECCCCccccccccccccccccccCHHHHHHHH
Confidence 45 567899987643211111 2233445566666665556778999999987432 1110 01123446899999
Q ss_pred HhhC-CCcEEEeccccCCCCeee--------cCcEEEEeCCcCCC
Q psy12823 238 QQRV-KPKYHVFGHVHEGYGITS--------DGRIIFINASTCDL 273 (295)
Q Consensus 238 ~~~~-~~~~~l~GH~H~~~~~~~--------~g~~~~vn~g~~~~ 273 (295)
. ++ ++.+|+|||+|....... +.+.+-||.|+.-.
T Consensus 376 ~-~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaSlvd 419 (496)
T TIGR03767 376 L-EHPNVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEINTASHID 419 (496)
T ss_pred h-cCCCceEEEECCcCCCccccccCCCCCCCcCCeEEEecccccc
Confidence 4 65 899999999999875322 24778889888743
No 60
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.00 E-value=4.5e-10 Score=96.93 Aligned_cols=61 Identities=25% Similarity=0.272 Sum_probs=43.6
Q ss_pred EEEccCCCCCcccc-----cc--------CCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCC------CCcEEEEcCCCC
Q psy12823 45 VCMSDTHSLTPHIR-----FN--------IPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLP------HKHKLVIAGNHE 105 (295)
Q Consensus 45 ~~iSDlH~~~~~l~-----~~--------~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~------~~pv~~V~GNHD 105 (295)
++|||+|++...++ .. ..+.|.++++||++++|.... +++++|.++. ..++++|.||||
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~--~vl~~l~~l~~~~~~~~~~v~~l~GNHE 78 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVI--EILWLLYKLEQEAAKAGGKVHFLLGNHE 78 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHH--HHHHHHHHHHHHHHhcCCeEEEeeCCCc
Confidence 47999999987642 11 247899999999999986432 4445544431 136999999999
Q ss_pred CC
Q psy12823 106 LS 107 (295)
Q Consensus 106 ~~ 107 (295)
..
T Consensus 79 ~~ 80 (208)
T cd07425 79 LM 80 (208)
T ss_pred HH
Confidence 75
No 61
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=98.99 E-value=1e-08 Score=82.36 Aligned_cols=61 Identities=23% Similarity=0.390 Sum_probs=44.9
Q ss_pred EEEEEccCCCCCccc-------c-----------c--cCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcC
Q psy12823 43 RVVCMSDTHSLTPHI-------R-----------F--NIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAG 102 (295)
Q Consensus 43 rI~~iSDlH~~~~~l-------~-----------~--~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~G 102 (295)
.|-++||+|++...+ . . ....-|.|.+.||++-..+.+. .+.+.+++|+. -+.+|+|
T Consensus 5 mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~~--~a~~IlerLnG-rkhlv~G 81 (186)
T COG4186 5 MMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRER--AAGLILERLNG-RKHLVPG 81 (186)
T ss_pred EEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccchhh--HHHHHHHHcCC-cEEEeeC
Confidence 478999999987652 0 0 1245699999999987554332 56677788876 5799999
Q ss_pred CCCC
Q psy12823 103 NHEL 106 (295)
Q Consensus 103 NHD~ 106 (295)
|||.
T Consensus 82 NhDk 85 (186)
T COG4186 82 NHDK 85 (186)
T ss_pred CCCC
Confidence 9995
No 62
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.95 E-value=1.4e-09 Score=93.90 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=27.9
Q ss_pred HHHHHHhhCCCcEEEeccccCCCCeeecCcEEEEeCCc
Q psy12823 233 LLTTVQQRVKPKYHVFGHVHEGYGITSDGRIIFINAST 270 (295)
Q Consensus 233 l~~~l~~~~~~~~~l~GH~H~~~~~~~~g~~~~vn~g~ 270 (295)
+.+.+ ...++++++|||+|.+... ..++..++|+|+
T Consensus 181 ~~~~~-~~~~~~~~i~GH~H~~~~~-~~~~~~~~n~G~ 216 (217)
T cd07398 181 VARLA-RRKGVDGVICGHTHRPALH-ELDGKLYINLGD 216 (217)
T ss_pred HHHHH-HhcCCCEEEECCCCCCCeE-EECCEEEEECCC
Confidence 33344 4789999999999999864 445789999986
No 63
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=98.94 E-value=1.3e-08 Score=90.12 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=43.9
Q ss_pred eEEEEEccCCCCCc------cc--------cccCCCCc-EEEEcCCCCCCCCHHH---HHHHHHHHhcCCCCcEEEEcCC
Q psy12823 42 VRVVCMSDTHSLTP------HI--------RFNIPDGD-IFIHAGDFTRCGGEEE---VTEFNTWIGNLPHKHKLVIAGN 103 (295)
Q Consensus 42 mrI~~iSDlH~~~~------~l--------~~~~~~~D-~viiaGDl~~~g~~~e---~~~~~~~L~~l~~~pv~~V~GN 103 (295)
++|+++||+|+... .+ ..+...+| +++.+||+.+...... .....+.|+.+. ..++++||
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~g--~d~~~~GN 78 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNALG--YDAVTIGN 78 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHhcC--CCEEeecc
Confidence 58999999996541 11 12334677 7789999988654322 235667777764 45788899
Q ss_pred CCCCC
Q psy12823 104 HELSF 108 (295)
Q Consensus 104 HD~~~ 108 (295)
||+.+
T Consensus 79 He~d~ 83 (252)
T cd00845 79 HEFDY 83 (252)
T ss_pred ccccc
Confidence 99853
No 64
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.90 E-value=4.2e-08 Score=88.32 Aligned_cols=64 Identities=11% Similarity=0.043 Sum_probs=39.5
Q ss_pred CccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhh-CCCcEEEeccccCCCCeeecCcEEEEeCCcCCC
Q psy12823 205 DTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQR-VKPKYHVFGHVHEGYGITSDGRIIFINASTCDL 273 (295)
Q Consensus 205 ~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~-~~~~~~l~GH~H~~~~~~~~g~~~~vn~g~~~~ 273 (295)
+..|+++|.+.....+. .. .......++. ++ ..++++++||.|........+++.++.+|..+.
T Consensus 185 D~IIvl~H~g~~~~~~~--~~--~~~~~~~~la-~~~~~vD~IlgGHsH~~~~~~~~~~~~v~q~g~~g~ 249 (277)
T cd07410 185 DVVVVLAHGGFERDLEE--SL--TGENAAYELA-EEVPGIDAILTGHQHRRFPGPTVNGVPVVQPGNWGS 249 (277)
T ss_pred CEEEEEecCCcCCCccc--cc--CCccHHHHHH-hcCCCCcEEEeCCCccccccCCcCCEEEEcCChhhC
Confidence 45688899875422110 00 1111122233 33 579999999999987543567899999998754
No 65
>KOG1432|consensus
Probab=98.90 E-value=1.2e-07 Score=85.45 Aligned_cols=60 Identities=20% Similarity=0.120 Sum_probs=41.0
Q ss_pred HHHHHHHhhCCCcEEEeccccCCCCeeecCc-EEEEeCCcCCC-CCC---CCCCCEEEEecCCCC
Q psy12823 232 ELLTTVQQRVKPKYHVFGHVHEGYGITSDGR-IIFINASTCDL-NYL---PTNPPIVFDIALPPG 291 (295)
Q Consensus 232 ~l~~~l~~~~~~~~~l~GH~H~~~~~~~~g~-~~~vn~g~~~~-~~~---~~~~~~~~~~~~~~~ 291 (295)
.+++.|....+++.++|||-|.+.-+-...+ .+++-+|.++- +|. -.++..|+++++.+.
T Consensus 289 g~~~~L~~r~~Vk~vf~GHdHvNDfC~~~k~~~wlCygGgaGyggYg~~gw~Rr~Rv~e~d~~~~ 353 (379)
T KOG1432|consen 289 GFLTTLVNRGNVKGVFCGHDHVNDFCGELKGELWLCYGGGAGYGGYGIGGWERRARVFELDLNKD 353 (379)
T ss_pred HHHHHHHhccCcceEEeccccccceecccCCeEEEEecCCCccCCcCcCCcccceEEEEcccccc
Confidence 5666664478999999999999876555555 67777766654 344 234555777777654
No 66
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.89 E-value=3.8e-09 Score=91.09 Aligned_cols=63 Identities=21% Similarity=0.242 Sum_probs=41.4
Q ss_pred EEEccCCCCCcc----------ccccCCCCcEEEEcCCCCCC--CC---HHHHHHHHHHHhcC--CCCcEEEEcCCCCCC
Q psy12823 45 VCMSDTHSLTPH----------IRFNIPDGDIFIHAGDFTRC--GG---EEEVTEFNTWIGNL--PHKHKLVIAGNHELS 107 (295)
Q Consensus 45 ~~iSDlH~~~~~----------l~~~~~~~D~viiaGDl~~~--g~---~~e~~~~~~~L~~l--~~~pv~~V~GNHD~~ 107 (295)
++|||+|++... ++....+.|.+.+.||+++. |. .+..++..+.|+++ ...++|+++||||.-
T Consensus 1 lFISDlHL~~~~p~~t~~fl~Fl~~~a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a~~G~~v~~i~GN~Dfl 80 (237)
T COG2908 1 LFISDLHLGPKRPALTAFFLDFLREEAAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLARKGTRVYYIHGNHDFL 80 (237)
T ss_pred CeeeccccCCCCcHHHHHHHHHHHhccccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHhcCCeEEEecCchHHH
Confidence 479999998432 12345578999999999983 21 22223444444432 224899999999963
No 67
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=98.79 E-value=2.1e-07 Score=86.79 Aligned_cols=61 Identities=16% Similarity=0.173 Sum_probs=41.8
Q ss_pred CccEEEecCCCCCCCCCCcCCCccCcH----HHHHHHHhhCCCcEEEeccccCCCCeeecCcEEEEeCCcCCC
Q psy12823 205 DTDVLISHTPPIGHGDLCCTGLRAGCV----ELLTTVQQRVKPKYHVFGHVHEGYGITSDGRIIFINASTCDL 273 (295)
Q Consensus 205 ~~~IlvtH~pp~~~~D~~~~~~~~g~~----~l~~~l~~~~~~~~~l~GH~H~~~~~~~~g~~~~vn~g~~~~ 273 (295)
+-.|++-|||.+.... +.+.. .|..+| +++++++++|||.|.-.-. ..+++.++..|.++.
T Consensus 214 ~WkIVvGHhPIySsG~------hg~~~~L~~~L~PLL-~ky~VdlYisGHDH~lq~i-~~~gt~yIvSGaGs~ 278 (394)
T PTZ00422 214 DYIIVVGDKPIYSSGS------SKGDSYLSYYLLPLL-KDAQVDLYISGYDRNMEVL-TDEGTAHINCGSGGN 278 (394)
T ss_pred CeEEEEecCceeecCC------CCCCHHHHHHHHHHH-HHcCcCEEEEccccceEEe-cCCCceEEEeCcccc
Confidence 5789999999985422 22222 455555 6899999999999975533 345667777776654
No 68
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.75 E-value=1.2e-07 Score=84.47 Aligned_cols=65 Identities=17% Similarity=0.313 Sum_probs=42.8
Q ss_pred eEEEEEccCCCCCc-------c---c-----cccCCCCc-EEEEcCCCCCCCCHH---HHHHHHHHHhcCCCCcEEEEcC
Q psy12823 42 VRVVCMSDTHSLTP-------H---I-----RFNIPDGD-IFIHAGDFTRCGGEE---EVTEFNTWIGNLPHKHKLVIAG 102 (295)
Q Consensus 42 mrI~~iSDlH~~~~-------~---l-----~~~~~~~D-~viiaGDl~~~g~~~---e~~~~~~~L~~l~~~pv~~V~G 102 (295)
++|++++|+|.-.+ . + +.+..++| +++.+||+++..... +.+...+.|+.++ ..++++|
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~--~d~~~~G 78 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNALG--VDLACFG 78 (257)
T ss_pred CeEEEEccceeecccCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhcC--CcEEeec
Confidence 48999999993111 0 1 11334577 999999999754322 2235667777775 3578999
Q ss_pred CCCCCC
Q psy12823 103 NHELSF 108 (295)
Q Consensus 103 NHD~~~ 108 (295)
|||+.+
T Consensus 79 NHefd~ 84 (257)
T cd07406 79 NHEFDF 84 (257)
T ss_pred cccccc
Confidence 999853
No 69
>KOG1378|consensus
Probab=98.75 E-value=5e-07 Score=84.80 Aligned_cols=182 Identities=19% Similarity=0.172 Sum_probs=97.6
Q ss_pred CCCCceEEEEEccCCCCCccc-----cccCCCCcEEEEcCCCCCCC-CH-HHHHHHHHHHhcCCC-CcEEEEcCCCCCCC
Q psy12823 37 VDPKKVRVVCMSDTHSLTPHI-----RFNIPDGDIFIHAGDFTRCG-GE-EEVTEFNTWIGNLPH-KHKLVIAGNHELSF 108 (295)
Q Consensus 37 ~~~~~mrI~~iSDlH~~~~~l-----~~~~~~~D~viiaGDl~~~g-~~-~e~~~~~~~L~~l~~-~pv~~V~GNHD~~~ 108 (295)
...-+.++++++|+=...... .....++|+||+.|||.... .. .....+.++++.+.. .|..++.||||...
T Consensus 143 ~~~~~~~~~i~GDlG~~~~~~s~~~~~~~~~k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~As~vPymv~~GNHE~d~ 222 (452)
T KOG1378|consen 143 GQDSPTRAAIFGDMGCTEPYTSTLRNQEENLKPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPIASYVPYMVCSGNHEIDW 222 (452)
T ss_pred CccCceeEEEEccccccccccchHhHHhcccCCcEEEEecchhhcCCCCccchHHHHhhhhhhhccCceEEecccccccC
Confidence 455788999999986654331 12334799999999997532 22 244455555554432 48999999999864
Q ss_pred CCC--CCCCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCC-eEEccCCcEEEcceEEEeec-CCCC-CC
Q psy12823 109 DPT--FTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTN-CTYLQDEERILYGIKFYGTP-WQPE-FC 183 (295)
Q Consensus 109 ~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~L~~~~~~i~gv~i~G~~-~~~~-~~ 183 (295)
... |. . +..++.... +- ....+ ..| +++++++.|++++ .... +.
T Consensus 223 ~~~~~F~-~----y~~Rf~mP~---------------------~~-s~s~~~l~Y----Sfd~G~vhfv~lsse~~~~~~ 271 (452)
T KOG1378|consen 223 PPQPCFV-P----YSARFNMPG---------------------NS-SESDSNLYY----SFDVGGVHFVVLSTETYYNFL 271 (452)
T ss_pred CCccccc-c----cceeeccCC---------------------Cc-CCCCCceeE----EEeeccEEEEEEecccccccc
Confidence 321 10 0 011111000 00 00001 111 4667788898865 2221 00
Q ss_pred CCCcccCchhhhhhhccCCCC---CccEEEecCCCCCCCCCCcCCCccCc-----HHHHHHHHhhCCCcEEEeccccCCC
Q psy12823 184 KWAFNVPRGEACLSKWQDIPA---DTDVLISHTPPIGHGDLCCTGLRAGC-----VELLTTVQQRVKPKYHVFGHVHEGY 255 (295)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~---~~~IlvtH~pp~~~~D~~~~~~~~g~-----~~l~~~l~~~~~~~~~l~GH~H~~~ 255 (295)
....++. ++.+.|.++.. .-.|++.|-|-+...+.. ....|. ..|.+++ -++++|+++.||.|..-
T Consensus 272 ~~~~QY~---WL~~dL~~v~r~~tPWlIv~~HrP~Y~S~~~~--~~reG~~~~~~~~LE~l~-~~~~VDvvf~GHvH~YE 345 (452)
T KOG1378|consen 272 KGTAQYQ---WLERDLASVDRKKTPWLIVQGHRPMYCSSNDA--HYREGEFESMREGLEPLF-VKYKVDVVFWGHVHRYE 345 (452)
T ss_pred ccchHHH---HHHHHHHHhcccCCCeEEEEecccceecCCch--hhccCcchhhHHHHHHHH-HHhceeEEEeccceehh
Confidence 1122222 33334433322 235677787776443310 111222 2466677 48999999999999754
No 70
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=98.74 E-value=1.2e-08 Score=91.49 Aligned_cols=63 Identities=19% Similarity=0.372 Sum_probs=50.8
Q ss_pred eEEEEEccCCCCCcccc-----cc-CCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy12823 42 VRVVCMSDTHSLTPHIR-----FN-IPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELS 107 (295)
Q Consensus 42 mrI~~iSDlH~~~~~l~-----~~-~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~ 107 (295)
|++++|||+|++...+. .. ..+.|.++++||++++|.... ++++++.++.. ++++|.||||..
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~--~vl~~l~~l~~-~~~~VlGNHD~~ 69 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSL--EVLRFVKSLGD-SAVTVLGNHDLH 69 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHH--HHHHHHHhcCC-CeEEEecChhHH
Confidence 79999999999987652 12 247899999999999987543 67788888753 689999999974
No 71
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.67 E-value=6.7e-07 Score=79.67 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=42.2
Q ss_pred eEEEEEccCCCCCcc-------c--------cccCCCCcEEEEcCCCCCCCCHHH---HHHHHHHHhcCCCCcEEEEcCC
Q psy12823 42 VRVVCMSDTHSLTPH-------I--------RFNIPDGDIFIHAGDFTRCGGEEE---VTEFNTWIGNLPHKHKLVIAGN 103 (295)
Q Consensus 42 mrI~~iSDlH~~~~~-------l--------~~~~~~~D~viiaGDl~~~g~~~e---~~~~~~~L~~l~~~pv~~V~GN 103 (295)
++|+++||+|..... + +.+..+.++++.+||+++...... -+...+.+..+.. -+++.||
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g~--d~~~~GN 78 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPISDLDKGETIIKIMNAVGY--DAVTPGN 78 (257)
T ss_pred CEEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchhhhhcCCcHHHHHHHhcCC--cEEcccc
Confidence 589999999985321 1 112226789999999987433221 1345677777653 3577899
Q ss_pred CCCC
Q psy12823 104 HELS 107 (295)
Q Consensus 104 HD~~ 107 (295)
||+.
T Consensus 79 Hefd 82 (257)
T cd07408 79 HEFD 82 (257)
T ss_pred cccc
Confidence 9975
No 72
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.66 E-value=9.3e-08 Score=81.02 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=32.7
Q ss_pred cCCCCcEEEEcCCCCCCCC--HHH----HHHHHHHHhcCC-----------------CCcEEEEcCCCCCC
Q psy12823 60 NIPDGDIFIHAGDFTRCGG--EEE----VTEFNTWIGNLP-----------------HKHKLVIAGNHELS 107 (295)
Q Consensus 60 ~~~~~D~viiaGDl~~~g~--~~e----~~~~~~~L~~l~-----------------~~pv~~V~GNHD~~ 107 (295)
...+||.|++.|||++.+. .+| +.++.+.+-... ..+++.|+||||..
T Consensus 41 ~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG 111 (193)
T cd08164 41 FWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDVG 111 (193)
T ss_pred HhcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccCC
Confidence 3569999999999998764 233 334444442111 24789999999974
No 73
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=98.62 E-value=1.4e-07 Score=88.73 Aligned_cols=73 Identities=22% Similarity=0.327 Sum_probs=55.2
Q ss_pred CCCCCCceEEEEEccCCCCCccc---------c------ccCCCCcEEEEcCCCCCC-----C---------CHHHHHHH
Q psy12823 35 TQVDPKKVRVVCMSDTHSLTPHI---------R------FNIPDGDIFIHAGDFTRC-----G---------GEEEVTEF 85 (295)
Q Consensus 35 ~~~~~~~mrI~~iSDlH~~~~~l---------~------~~~~~~D~viiaGDl~~~-----g---------~~~e~~~~ 85 (295)
.+......+++++||+|.++..+ + .-..+..+++++||+++. | ..++|+++
T Consensus 219 ~~~~~e~v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~ 298 (481)
T COG1311 219 NNTGDERVYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEEL 298 (481)
T ss_pred CCCCCcceEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHH
Confidence 33456778999999999987542 0 023467899999999993 1 13578889
Q ss_pred HHHHhcCCC-CcEEEEcCCCCCC
Q psy12823 86 NTWIGNLPH-KHKLVIAGNHELS 107 (295)
Q Consensus 86 ~~~L~~l~~-~pv~~V~GNHD~~ 107 (295)
.++|..++. ..|+++|||||..
T Consensus 299 A~~L~~vp~~I~v~i~PGnhDa~ 321 (481)
T COG1311 299 AEFLDQVPEHIKVFIMPGNHDAV 321 (481)
T ss_pred HHHHhhCCCCceEEEecCCCCcc
Confidence 999999873 3589999999974
No 74
>KOG2679|consensus
Probab=98.61 E-value=1.4e-07 Score=82.44 Aligned_cols=212 Identities=16% Similarity=0.128 Sum_probs=106.7
Q ss_pred CCCCCCCceEEEEEccCCCCCcc------cc----ccCCCCcEEEEcCCCCC-CCCH----HHHHHHHHHHh---cCCCC
Q psy12823 34 KTQVDPKKVRVVCMSDTHSLTPH------IR----FNIPDGDIFIHAGDFTR-CGGE----EEVTEFNTWIG---NLPHK 95 (295)
Q Consensus 34 ~~~~~~~~mrI~~iSDlH~~~~~------l~----~~~~~~D~viiaGDl~~-~g~~----~e~~~~~~~L~---~l~~~ 95 (295)
.+++++..+++++|+|+=..... +. .+..++|+||-+||-+. .|.. ..++..++-+- +|. +
T Consensus 36 ~p~~~dgslsflvvGDwGr~g~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSLQ-k 114 (336)
T KOG2679|consen 36 DPAKSDGSLSFLVVGDWGRRGSFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPSLQ-K 114 (336)
T ss_pred CCCCCCCceEEEEEcccccCCchhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCCCChhHHhhhhhcccCcccc-c
Confidence 34457889999999998643221 11 23468999999999654 3432 23343333332 233 5
Q ss_pred cEEEEcCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEEEc--ceEE
Q psy12823 96 HKLVIAGNHELSFDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILY--GIKF 173 (295)
Q Consensus 96 pv~~V~GNHD~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~i~--gv~i 173 (295)
|.|.|.||||+..+... .++ ..+++. ..+|. ...-.+...+.+++. ++++
T Consensus 115 pWy~vlGNHDyrGnV~A--Qls----------------------~~l~~~--d~RW~--c~rsf~~~ae~ve~f~v~~~~ 166 (336)
T KOG2679|consen 115 PWYSVLGNHDYRGNVEA--QLS----------------------PVLRKI--DKRWI--CPRSFYVDAEIVEMFFVDTTP 166 (336)
T ss_pred chhhhccCccccCchhh--hhh----------------------HHHHhh--cccee--cccHHhhcceeeeeecccccc
Confidence 89999999998643221 110 001110 01121 111122222223322 1222
Q ss_pred EeecC----CCCCCCCCcccCc-------hhhhhhhccCCCCCccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCC
Q psy12823 174 YGTPW----QPEFCKWAFNVPR-------GEACLSKWQDIPADTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVK 242 (295)
Q Consensus 174 ~G~~~----~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~ 242 (295)
.+... +....+|.-..++ ..++...+++...+-.|++-|||........ .-..=.+.|+.+| ++.+
T Consensus 167 f~~d~~~~~~~~~ydw~~v~PR~~~~~~~l~~le~~L~~S~a~wkiVvGHh~i~S~~~HG--~T~eL~~~LlPiL-~~n~ 243 (336)
T KOG2679|consen 167 FMDDTFTLCTDDVYDWRGVLPRVKYLRALLSWLEVALKASRAKWKIVVGHHPIKSAGHHG--PTKELEKQLLPIL-EANG 243 (336)
T ss_pred chhhheecccccccccccCChHHHHHHHHHHHHHHHHHHhhcceEEEecccceehhhccC--ChHHHHHHHHHHH-HhcC
Confidence 22111 0011123222222 1122223333334678999999986431110 0000113455566 6899
Q ss_pred CcEEEeccccCCCCeee-cCcEEEEeCCcCCCCCCC
Q psy12823 243 PKYHVFGHVHEGYGITS-DGRIIFINASTCDLNYLP 277 (295)
Q Consensus 243 ~~~~l~GH~H~~~~~~~-~g~~~~vn~g~~~~~~~~ 277 (295)
+++.++||-|.-.-... +.++-++..|.++..++.
T Consensus 244 VdlY~nGHDHcLQhis~~e~~iqf~tSGagSkaw~g 279 (336)
T KOG2679|consen 244 VDLYINGHDHCLQHISSPESGIQFVTSGAGSKAWRG 279 (336)
T ss_pred CcEEEecchhhhhhccCCCCCeeEEeeCCcccccCC
Confidence 99999999997553332 667778887777654443
No 75
>PHA02239 putative protein phosphatase
Probab=98.59 E-value=5.2e-08 Score=85.57 Aligned_cols=64 Identities=17% Similarity=0.355 Sum_probs=44.0
Q ss_pred eEEEEEccCCCCCcccc-----cc--CCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcC-C-CCcEEEEcCCCCCC
Q psy12823 42 VRVVCMSDTHSLTPHIR-----FN--IPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNL-P-HKHKLVIAGNHELS 107 (295)
Q Consensus 42 mrI~~iSDlH~~~~~l~-----~~--~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l-~-~~pv~~V~GNHD~~ 107 (295)
||+++|||+|+....+. .. ....|.|+++||++++|.... +.++.|.++ . ..++++|+||||..
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~--~v~~~l~~~~~~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSK--DVVNYIFDLMSNDDNVVTLLGNHDDE 73 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChH--HHHHHHHHHhhcCCCeEEEECCcHHH
Confidence 79999999998765441 11 123699999999999886432 333433222 1 13689999999964
No 76
>KOG3325|consensus
Probab=98.57 E-value=1.3e-06 Score=69.62 Aligned_cols=131 Identities=14% Similarity=0.234 Sum_probs=87.5
Q ss_pred eEEEEEccCCCCCcc--c--ccc----CCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCC
Q psy12823 42 VRVVCMSDTHSLTPH--I--RFN----IPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELSFDPTFT 113 (295)
Q Consensus 42 mrI~~iSDlH~~~~~--l--~~~----~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~~~~~~~ 113 (295)
|-+++++|+|..... + +++ -.+...|+++|.++.. ++.++|+.+.. -+-+|.|.-|... +
T Consensus 1 mLvL~lgD~HiP~Ra~~Lp~KFkklLvPgki~hilctGNlcs~-------e~~dylk~l~~-dvhiVrGeFD~~~--~-- 68 (183)
T KOG3325|consen 1 MLVLVLGDLHIPHRANDLPAKFKKLLVPGKIQHILCTGNLCSK-------ESYDYLKTLSS-DVHIVRGEFDENL--K-- 68 (183)
T ss_pred CEEEEeccccCCccccccCHHHHhccCCCceeEEEEeCCcchH-------HHHHHHHhhCC-CcEEEecccCccc--c--
Confidence 568999999997643 3 221 2478889999997652 67788888764 5888999888421 0
Q ss_pred CCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCCcEEEcceEEEeecCCCCCCCCCcccCchh
Q psy12823 114 HPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYGIKFYGTPWQPEFCKWAFNVPRGE 193 (295)
Q Consensus 114 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~i~gv~i~G~~~~~~~~~~~~~~~~~~ 193 (295)
+| .+..+++
T Consensus 69 ------------------yP----------------------------~~kvvtv------------------------- 77 (183)
T KOG3325|consen 69 ------------------YP----------------------------ENKVVTV------------------------- 77 (183)
T ss_pred ------------------CC----------------------------ccceEEe-------------------------
Confidence 00 0111111
Q ss_pred hhhhhccCCCCCccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCCCcEEEeccccCCCCeeecCcEEEEeCCcCCC
Q psy12823 194 ACLSKWQDIPADTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGITSDGRIIFINASTCDL 273 (295)
Q Consensus 194 ~~~~~~~~~~~~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~~~~~l~GH~H~~~~~~~~g~~~~vn~g~~~~ 273 (295)
.+.+|=++|....- .+|.++.+.++++...+|+.++||+|.-..++ .++..+||||++..
T Consensus 78 ----------GqfkIG~chGhqVi---------P~gd~~sL~~LaRqldvDILl~G~Th~f~Aye-~eg~ffvnPGSaTG 137 (183)
T KOG3325|consen 78 ----------GQFKIGLCHGHQVI---------PWGDPESLALLARQLDVDILLTGHTHKFEAYE-HEGKFFVNPGSATG 137 (183)
T ss_pred ----------ccEEEEeecCcEee---------cCCCHHHHHHHHHhcCCcEEEeCCceeEEEEE-eCCcEEeCCCcccC
Confidence 23557777766321 24455667777678899999999999866554 45668999999976
Q ss_pred CC
Q psy12823 274 NY 275 (295)
Q Consensus 274 ~~ 275 (295)
.|
T Consensus 138 Af 139 (183)
T KOG3325|consen 138 AF 139 (183)
T ss_pred CC
Confidence 43
No 77
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=98.55 E-value=2.9e-08 Score=87.20 Aligned_cols=64 Identities=20% Similarity=0.365 Sum_probs=47.3
Q ss_pred eEEEEEccCCCCCcccc-------ccC--------CCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCC-CcEEEEcCCCC
Q psy12823 42 VRVVCMSDTHSLTPHIR-------FNI--------PDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPH-KHKLVIAGNHE 105 (295)
Q Consensus 42 mrI~~iSDlH~~~~~l~-------~~~--------~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~-~pv~~V~GNHD 105 (295)
|||++|||+|++...|. +.. .+.|.++++||++++|.... +++++|.++.. ..+++|.||||
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~--evl~~l~~l~~~~~~~~v~GNHE 78 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSP--EVLRLVMSMVAAGAALCVPGNHD 78 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHH--HHHHHHHHHhhCCcEEEEECCcH
Confidence 79999999999987652 111 13699999999999987433 56666665421 25899999999
Q ss_pred CC
Q psy12823 106 LS 107 (295)
Q Consensus 106 ~~ 107 (295)
..
T Consensus 79 ~~ 80 (234)
T cd07423 79 NK 80 (234)
T ss_pred HH
Confidence 64
No 78
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=98.51 E-value=1.4e-07 Score=82.42 Aligned_cols=65 Identities=18% Similarity=0.147 Sum_probs=48.7
Q ss_pred eEEEEEccCCCCCcc--------c----------c----ccCCCCcEEEEcCCCCCCCCH-HHHHHHHHHHhcCCCCcEE
Q psy12823 42 VRVVCMSDTHSLTPH--------I----------R----FNIPDGDIFIHAGDFTRCGGE-EEVTEFNTWIGNLPHKHKL 98 (295)
Q Consensus 42 mrI~~iSDlH~~~~~--------l----------~----~~~~~~D~viiaGDl~~~g~~-~e~~~~~~~L~~l~~~pv~ 98 (295)
-+.+++||+|++... + + ....++|.||++||+.+.... .+++.+.++++++. .+++
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~~-~~v~ 93 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIEVTF-RDLI 93 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHHhcC-CcEE
Confidence 468999999998632 0 0 123579999999999975443 56667778888765 3899
Q ss_pred EEcCCCCCC
Q psy12823 99 VIAGNHELS 107 (295)
Q Consensus 99 ~V~GNHD~~ 107 (295)
+|+||||..
T Consensus 94 ~V~GNHD~~ 102 (225)
T TIGR00024 94 LIRGNHDAL 102 (225)
T ss_pred EECCCCCCc
Confidence 999999953
No 79
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.49 E-value=1.9e-06 Score=77.01 Aligned_cols=54 Identities=28% Similarity=0.277 Sum_probs=35.6
Q ss_pred CccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCCCcEEEeccccCCCCe--eecCcEEEEeCCcCCC
Q psy12823 205 DTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGI--TSDGRIIFINASTCDL 273 (295)
Q Consensus 205 ~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~~~~~l~GH~H~~~~~--~~~g~~~~vn~g~~~~ 273 (295)
+..|+++|.+... | .++.+ +...+|++++||.|..... ...++++++.+|..+.
T Consensus 185 D~iI~l~H~g~~~--~----------~~la~---~~~~iDlilgGH~H~~~~~~~~~~~~t~v~~~g~~~~ 240 (264)
T cd07411 185 DVVVLLSHNGLPV--D----------VELAE---RVPGIDVILSGHTHERTPKPIIAGGGTLVVEAGSHGK 240 (264)
T ss_pred CEEEEEecCCchh--h----------HHHHh---cCCCCcEEEeCcccccccCcccccCCEEEEEcCcccc
Confidence 5668888887421 1 12332 2347899999999976532 3457889999987653
No 80
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.48 E-value=5e-06 Score=88.67 Aligned_cols=69 Identities=14% Similarity=0.155 Sum_probs=47.6
Q ss_pred CCCceEEEEEccCCCCCccc--------cccCCCCcEEEE-cCCCCCCCCHHH---HHHHHHHHhcCCCCcEEEEcCCCC
Q psy12823 38 DPKKVRVVCMSDTHSLTPHI--------RFNIPDGDIFIH-AGDFTRCGGEEE---VTEFNTWIGNLPHKHKLVIAGNHE 105 (295)
Q Consensus 38 ~~~~mrI~~iSDlH~~~~~l--------~~~~~~~D~vii-aGDl~~~g~~~e---~~~~~~~L~~l~~~pv~~V~GNHD 105 (295)
+...++|+++||+|+..... +.+..++|.|++ +||+++...... .+..++.|..+. .-++++||||
T Consensus 657 ~~~~l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~lg--~d~~~~GNHE 734 (1163)
T PRK09419 657 DNWELTILHTNDFHGHLDGAAKRVTKIKEVKEENPNTILVDAGDVYQGSLYSNLLKGLPVLKMMKEMG--YDASTFGNHE 734 (1163)
T ss_pred CceEEEEEEEeecccCCCCHHHHHHHHHHHHhhCCCeEEEecCCCCCCcchhhhcCChHHHHHHhCcC--CCEEEecccc
Confidence 45669999999999765322 123457888877 999987543221 235677777764 3478999999
Q ss_pred CCC
Q psy12823 106 LSF 108 (295)
Q Consensus 106 ~~~ 108 (295)
+.+
T Consensus 735 fd~ 737 (1163)
T PRK09419 735 FDW 737 (1163)
T ss_pred ccc
Confidence 864
No 81
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.46 E-value=6e-06 Score=74.85 Aligned_cols=67 Identities=18% Similarity=0.195 Sum_probs=39.2
Q ss_pred CccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHh-hCCCcEEEeccccCCCCee--ecCcEEEEeCCcCCC
Q psy12823 205 DTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQ-RVKPKYHVFGHVHEGYGIT--SDGRIIFINASTCDL 273 (295)
Q Consensus 205 ~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~-~~~~~~~l~GH~H~~~~~~--~~g~~~~vn~g~~~~ 273 (295)
+..|+++|.......+.. .......+..+++.+ ...+|++++||+|...... ..++++++.+|..+.
T Consensus 193 D~IIvL~H~G~~~~~~~~--~~~~~~~~~~~l~~~~~~~iD~IlgGHsH~~~~~~~~~~~~~~v~q~g~~g~ 262 (288)
T cd07412 193 DAIVVLAHEGGSTKGGDD--TCSAASGPIADIVNRLDPDVDVVFAGHTHQAYNCTVPAGNPRLVTQAGSYGK 262 (288)
T ss_pred CEEEEEeCCCCCCCCCCc--cccccChhHHHHHhhcCCCCCEEEeCccCccccccccCcCCEEEEecChhhc
Confidence 456788998854221110 000011123333321 2478999999999987532 457899999998764
No 82
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=98.45 E-value=4.1e-06 Score=79.05 Aligned_cols=84 Identities=14% Similarity=0.070 Sum_probs=52.6
Q ss_pred cCchhhhhhhccCCC-CCccEEEecCCCCCCC-----CCCc-------CCCccC--cHHHHHHHHhhCCCcEEEeccccC
Q psy12823 189 VPRGEACLSKWQDIP-ADTDVLISHTPPIGHG-----DLCC-------TGLRAG--CVELLTTVQQRVKPKYHVFGHVHE 253 (295)
Q Consensus 189 ~~~~~~~~~~~~~~~-~~~~IlvtH~pp~~~~-----D~~~-------~~~~~g--~~~l~~~l~~~~~~~~~l~GH~H~ 253 (295)
..+.+++.+.+...+ +++.++++||+|.... |... ...... ..+|.+.|.+..++..|+|||+|.
T Consensus 331 ~eQLaWLe~~La~a~a~~p~VVV~hHpPi~t~gi~~md~w~~~~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvHr 410 (492)
T TIGR03768 331 AKRWDWLKAELARGQADGQLMIIAAHIPIAVSPIGSEMEWWLGAADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRHL 410 (492)
T ss_pred HHHHHHHHHHHHhCcCCCceEEEEeCCCcccCCccchhhhccccccccccccccccHHHHHHHHhcCCCeEEEEcCCccc
Confidence 344556666676655 5677888888887431 1100 001111 147888885445899999999998
Q ss_pred CCCee--------ecCcEEEEeCCcCC
Q psy12823 254 GYGIT--------SDGRIIFINASTCD 272 (295)
Q Consensus 254 ~~~~~--------~~g~~~~vn~g~~~ 272 (295)
+...- .+++.+-|+.++.-
T Consensus 411 n~v~a~~~p~~~~pe~gFWeveTaSl~ 437 (492)
T TIGR03768 411 NTVKAFPSPDPARPEYGFWQVETASLR 437 (492)
T ss_pred ccccccCCCCCCCCcCceEEEeehhhc
Confidence 76431 23578889888874
No 83
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=98.42 E-value=3e-07 Score=81.74 Aligned_cols=61 Identities=21% Similarity=0.343 Sum_probs=48.3
Q ss_pred EEEEccCCCCCcccc-----cc-CCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy12823 44 VVCMSDTHSLTPHIR-----FN-IPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELS 107 (295)
Q Consensus 44 I~~iSDlH~~~~~l~-----~~-~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~ 107 (295)
+.+|||+|++...++ .. .++.|.++++||++++|.... ++++++.++.. .+++|.||||..
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~--evl~~l~~l~~-~v~~VlGNHD~~ 67 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSL--ETLRFVKSLGD-SAKTVLGNHDLH 67 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHH--HHHHHHHhcCC-CeEEEcCCchHH
Confidence 368999999987652 22 236899999999999997544 68888888763 689999999985
No 84
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=98.40 E-value=2.9e-07 Score=82.23 Aligned_cols=63 Identities=21% Similarity=0.334 Sum_probs=49.6
Q ss_pred eEEEEEccCCCCCcccc-----cc-CCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy12823 42 VRVVCMSDTHSLTPHIR-----FN-IPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELS 107 (295)
Q Consensus 42 mrI~~iSDlH~~~~~l~-----~~-~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~ 107 (295)
|++.+|||+|++...+. .. .+..|.++++||++++|.... ++++++.++.. .+++|.||||..
T Consensus 1 m~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~sl--evL~~l~~l~~-~~~~VlGNHD~~ 69 (279)
T TIGR00668 1 MATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSL--EVLRYVKSLGD-AVRLVLGNHDLH 69 (279)
T ss_pred CcEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHH--HHHHHHHhcCC-CeEEEEChhHHH
Confidence 67899999999987652 22 246799999999999997544 67788888753 577999999974
No 85
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.40 E-value=6.4e-06 Score=74.40 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=40.7
Q ss_pred eEEEEEccCCCCCcc------------------c--------cccCCCCcE-EEEcCCCCCCCCHHH---HHHHHHHHhc
Q psy12823 42 VRVVCMSDTHSLTPH------------------I--------RFNIPDGDI-FIHAGDFTRCGGEEE---VTEFNTWIGN 91 (295)
Q Consensus 42 mrI~~iSDlH~~~~~------------------l--------~~~~~~~D~-viiaGDl~~~g~~~e---~~~~~~~L~~ 91 (295)
++|++++|+|..... + +.+...++. ++-+||+++...... -+...+.++.
T Consensus 1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~ 80 (281)
T cd07409 1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMNL 80 (281)
T ss_pred CEEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHHh
Confidence 479999999975321 1 012235664 555999987543211 1345677777
Q ss_pred CCCCcEEEEcCCCCCCC
Q psy12823 92 LPHKHKLVIAGNHELSF 108 (295)
Q Consensus 92 l~~~pv~~V~GNHD~~~ 108 (295)
+.. -.++.||||+.+
T Consensus 81 ~g~--D~~~lGNHefd~ 95 (281)
T cd07409 81 LGY--DAMTLGNHEFDD 95 (281)
T ss_pred cCC--CEEEeccccccC
Confidence 754 366779999864
No 86
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=98.37 E-value=3e-07 Score=76.93 Aligned_cols=62 Identities=19% Similarity=0.223 Sum_probs=39.5
Q ss_pred EEEccCCCCCcc--------c---------c-----ccCCCCcEEEEcCCCCCCCCH---HHHHHH-HHHHhcCCCCcEE
Q psy12823 45 VCMSDTHSLTPH--------I---------R-----FNIPDGDIFIHAGDFTRCGGE---EEVTEF-NTWIGNLPHKHKL 98 (295)
Q Consensus 45 ~~iSDlH~~~~~--------l---------~-----~~~~~~D~viiaGDl~~~g~~---~e~~~~-~~~L~~l~~~pv~ 98 (295)
+++||+|++... + + ....++|.||++||+++.... .+.... ...+.... .+++
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~-~~v~ 79 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPRGQTEDTLERLDRLIEEYGPERLIILGDLKHSFGGLSRQEFEEVAFLRLLAKD-VDVI 79 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCcccHHHHHHHHHHHHHhcCCCEEEEeCcccccccccCHHHHHHHHHHHhccCC-CeEE
Confidence 579999998642 0 0 134689999999999975432 222111 11222222 4899
Q ss_pred EEcCCCCCC
Q psy12823 99 VIAGNHELS 107 (295)
Q Consensus 99 ~V~GNHD~~ 107 (295)
+|+||||..
T Consensus 80 ~i~GNHD~~ 88 (172)
T cd07391 80 LIRGNHDGG 88 (172)
T ss_pred EEcccCccc
Confidence 999999974
No 87
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=98.35 E-value=3.9e-07 Score=80.62 Aligned_cols=64 Identities=22% Similarity=0.314 Sum_probs=45.6
Q ss_pred eEEEEEccCCCCCcccc-------ccC-------CCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCC-CCcEEEEcCCCCC
Q psy12823 42 VRVVCMSDTHSLTPHIR-------FNI-------PDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLP-HKHKLVIAGNHEL 106 (295)
Q Consensus 42 mrI~~iSDlH~~~~~l~-------~~~-------~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~-~~pv~~V~GNHD~ 106 (295)
||+.+|||+|+....|. +.. +.-|.++++||++|+|.... ++++++.++. ...+++|.||||.
T Consensus 1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~--~vl~~~~~~~~~~~~~~l~GNHE~ 78 (245)
T PRK13625 1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSL--RMIEIVWELVEKKAAYYVPGNHCN 78 (245)
T ss_pred CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChH--HHHHHHHHHhhCCCEEEEeCccHH
Confidence 78999999999877541 111 24589999999999986432 4555554432 1269999999995
Q ss_pred C
Q psy12823 107 S 107 (295)
Q Consensus 107 ~ 107 (295)
.
T Consensus 79 ~ 79 (245)
T PRK13625 79 K 79 (245)
T ss_pred H
Confidence 3
No 88
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.32 E-value=2.1e-05 Score=71.00 Aligned_cols=66 Identities=24% Similarity=0.341 Sum_probs=42.8
Q ss_pred CceEEEEEccCCCCCcc-------------c-------cc--cCCCCc-EEEEcCCCCCCCCHH-----HHHHHHHHHhc
Q psy12823 40 KKVRVVCMSDTHSLTPH-------------I-------RF--NIPDGD-IFIHAGDFTRCGGEE-----EVTEFNTWIGN 91 (295)
Q Consensus 40 ~~mrI~~iSDlH~~~~~-------------l-------~~--~~~~~D-~viiaGDl~~~g~~~-----e~~~~~~~L~~ 91 (295)
..++|++++|+|..... + +. ....++ +++-+||+.+..... .-+...+.+..
T Consensus 4 ~~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g~~~~~~mN~ 83 (282)
T cd07407 4 GDINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASPPPGSYSNPIFRM 83 (282)
T ss_pred ceEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeecCCChHHHHHHHh
Confidence 46899999999975320 0 11 123455 566799998843221 22345677777
Q ss_pred CCCCcEEEEcCCCCCC
Q psy12823 92 LPHKHKLVIAGNHELS 107 (295)
Q Consensus 92 l~~~pv~~V~GNHD~~ 107 (295)
++. =.+++||||+.
T Consensus 84 mgy--Da~tlGNHEFd 97 (282)
T cd07407 84 MPY--DLLTIGNHELY 97 (282)
T ss_pred cCC--cEEeecccccC
Confidence 753 48999999985
No 89
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=98.29 E-value=5.7e-05 Score=67.05 Aligned_cols=65 Identities=14% Similarity=0.102 Sum_probs=46.0
Q ss_pred EEEEEccCCCCCccc------------c--c-------cCCCCcEEEEcCCCCCCCC--------------------HHH
Q psy12823 43 RVVCMSDTHSLTPHI------------R--F-------NIPDGDIFIHAGDFTRCGG--------------------EEE 81 (295)
Q Consensus 43 rI~~iSDlH~~~~~l------------~--~-------~~~~~D~viiaGDl~~~g~--------------------~~e 81 (295)
.|+++||+|.+.... . . ...++..||+|||.++.-. .+.
T Consensus 1 ~i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (257)
T cd07387 1 YIALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEA 80 (257)
T ss_pred CEEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhccccccchhhHHH
Confidence 389999999976531 0 0 1246678999999987321 234
Q ss_pred HHHHHHHHhcCC-CCcEEEEcCCCCCC
Q psy12823 82 VTEFNTWIGNLP-HKHKLVIAGNHELS 107 (295)
Q Consensus 82 ~~~~~~~L~~l~-~~pv~~V~GNHD~~ 107 (295)
++++.++|.++. ..||.++|||||..
T Consensus 81 ~~~ld~~l~~l~~~i~V~imPG~~Dp~ 107 (257)
T cd07387 81 VKELDNFLSQLASSVPVDLMPGEFDPA 107 (257)
T ss_pred HHHHHHHHHhhhcCCeEEECCCCCCcc
Confidence 566777787765 34899999999975
No 90
>KOG2310|consensus
Probab=98.27 E-value=1.6e-05 Score=75.68 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=31.5
Q ss_pred CCceEEEEEccCCCCCcc---c-------------c-ccCCCCcEEEEcCCCCCCCC
Q psy12823 39 PKKVRVVCMSDTHSLTPH---I-------------R-FNIPDGDIFIHAGDFTRCGG 78 (295)
Q Consensus 39 ~~~mrI~~iSDlH~~~~~---l-------------~-~~~~~~D~viiaGDl~~~g~ 78 (295)
...|||++.||.|++... . . +...++|.|++.|||+....
T Consensus 11 entirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNk 67 (646)
T KOG2310|consen 11 ENTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENK 67 (646)
T ss_pred ccceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCC
Confidence 677999999999998642 1 1 24569999999999998654
No 91
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=98.27 E-value=4.5e-05 Score=69.02 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=40.2
Q ss_pred eEEEEEccCCCCCcc-------c--------cccC-----CCCcEEEEcCCCCCCCCHHH---HHHHHHHHhcCCCCcEE
Q psy12823 42 VRVVCMSDTHSLTPH-------I--------RFNI-----PDGDIFIHAGDFTRCGGEEE---VTEFNTWIGNLPHKHKL 98 (295)
Q Consensus 42 mrI~~iSDlH~~~~~-------l--------~~~~-----~~~D~viiaGDl~~~g~~~e---~~~~~~~L~~l~~~pv~ 98 (295)
++|++++|+|..... + +.+. ...-+++-+||+........ -+...+.+..+.. -.
T Consensus 1 ltIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~~~~~g~~~~~~~n~~g~--Da 78 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGY--DA 78 (285)
T ss_pred CEEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhHHhcCcchHHHHHHhhCC--cE
Confidence 479999999996421 1 0111 23358899999986322211 1234567777753 36
Q ss_pred EEcCCCCCCC
Q psy12823 99 VIAGNHELSF 108 (295)
Q Consensus 99 ~V~GNHD~~~ 108 (295)
+++||||+.+
T Consensus 79 ~~~GNHEfD~ 88 (285)
T cd07405 79 MAVGNHEFDN 88 (285)
T ss_pred Eeeccccccc
Confidence 7779999853
No 92
>KOG3662|consensus
Probab=98.21 E-value=2.3e-06 Score=79.72 Aligned_cols=72 Identities=21% Similarity=0.341 Sum_probs=52.0
Q ss_pred CCceEEEEEccCCCCCc----c----c---------c------ccCCCCcEEEEcCCCCCCCC---HHHHHHHHHHHhcC
Q psy12823 39 PKKVRVVCMSDTHSLTP----H----I---------R------FNIPDGDIFIHAGDFTRCGG---EEEVTEFNTWIGNL 92 (295)
Q Consensus 39 ~~~mrI~~iSDlH~~~~----~----l---------~------~~~~~~D~viiaGDl~~~g~---~~e~~~~~~~L~~l 92 (295)
....||+.+||.|+-.. . | + ....+||++++.|||++.|. .+|+.+..+.++++
T Consensus 46 ~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkI 125 (410)
T KOG3662|consen 46 ENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKI 125 (410)
T ss_pred CCceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHh
Confidence 68899999999998542 1 1 0 12469999999999999765 45665555555543
Q ss_pred ----CCCcEEEEcCCCCCCCCC
Q psy12823 93 ----PHKHKLVIAGNHELSFDP 110 (295)
Q Consensus 93 ----~~~pv~~V~GNHD~~~~~ 110 (295)
...+++.+|||||..+..
T Consensus 126 f~~k~~~~~~~i~GNhDIGf~~ 147 (410)
T KOG3662|consen 126 FGRKGNIKVIYIAGNHDIGFGN 147 (410)
T ss_pred hCCCCCCeeEEeCCcccccccc
Confidence 235899999999986433
No 93
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=98.15 E-value=2.7e-06 Score=74.18 Aligned_cols=61 Identities=21% Similarity=0.348 Sum_probs=44.2
Q ss_pred EEEccCCCCCcccc-----ccC--------CCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCC-CcEEEEcCCCCCC
Q psy12823 45 VCMSDTHSLTPHIR-----FNI--------PDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPH-KHKLVIAGNHELS 107 (295)
Q Consensus 45 ~~iSDlH~~~~~l~-----~~~--------~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~-~pv~~V~GNHD~~ 107 (295)
.+|||+|++...|. ... ...|.+|++||++|+|.... +++++|.++.. ..+++|.||||..
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~--~vl~~l~~l~~~~~~~~l~GNHE~~ 76 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIR--ELLEIVKSMVDAGHALAVMGNHEFN 76 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHH--HHHHHHHHhhcCCCEEEEEccCcHH
Confidence 58999999987642 111 24689999999999997543 56666666531 2589999999964
No 94
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=98.12 E-value=2.5e-06 Score=74.04 Aligned_cols=62 Identities=23% Similarity=0.381 Sum_probs=44.8
Q ss_pred EEEccCCCCCcccc-----ccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCC--CCcEEEEcCCCCCCC
Q psy12823 45 VCMSDTHSLTPHIR-----FNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLP--HKHKLVIAGNHELSF 108 (295)
Q Consensus 45 ~~iSDlH~~~~~l~-----~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~--~~pv~~V~GNHD~~~ 108 (295)
.++||+|+....+. ......|.+|++||++++|.... +.++++..+. ..++++|.||||...
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~~d~li~lGD~vdrg~~~~--~~l~~l~~~~~~~~~~~~l~GNHe~~~ 69 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSV--EVIDLLLALKILPDNVILLRGNHEDML 69 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCCCCEEEEECCEeCCCCCcH--HHHHHHHHhcCCCCcEEEEccCchhhh
Confidence 37999999876542 23357999999999999886432 4555555442 137999999999853
No 95
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.10 E-value=0.00012 Score=74.44 Aligned_cols=62 Identities=11% Similarity=0.004 Sum_probs=37.4
Q ss_pred CccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCCCcEEEeccccCCCCeeecCcEEEEeCCcCCC
Q psy12823 205 DTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGITSDGRIIFINASTCDL 273 (295)
Q Consensus 205 ~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~~~~~l~GH~H~~~~~~~~g~~~~vn~g~~~~ 273 (295)
+..|+++|..... |.. ..+.+.....+.+-..+|++++||+|..... ..+++.++-+|..+.
T Consensus 246 DvIIaLsH~G~~~--d~~----~~~~ena~~~l~~v~gID~IlgGHsH~~~~~-~ingv~vvqaG~~G~ 307 (780)
T PRK09418 246 DVIVALAHSGVDK--SGY----NVGMENASYYLTEVPGVDAVLMGHSHTEVKD-VFNGVPVVMPGVFGS 307 (780)
T ss_pred CEEEEEeccCccc--ccc----cccchhhhHHHhcCCCCCEEEECCCCCcccc-cCCCEEEEEcChhhc
Confidence 4567889998642 211 0111111111222247999999999998753 456788888887764
No 96
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.06 E-value=9.4e-05 Score=79.07 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=43.2
Q ss_pred CCceEEEEEccCCCCCcc-------------c--------cccCCCCcEEEE-cCCCCCCCCHHH------------HHH
Q psy12823 39 PKKVRVVCMSDTHSLTPH-------------I--------RFNIPDGDIFIH-AGDFTRCGGEEE------------VTE 84 (295)
Q Consensus 39 ~~~mrI~~iSDlH~~~~~-------------l--------~~~~~~~D~vii-aGDl~~~g~~~e------------~~~ 84 (295)
...++|++++|+|..... + +.+...++.|++ +||+.+.....+ ...
T Consensus 39 ~~~l~il~tnD~Hg~l~~~~y~~~~~~~~~Glar~at~i~~~r~~~~n~llld~GD~~qGs~l~~~~~~~~~~~~~~~~~ 118 (1163)
T PRK09419 39 LVNIQILATTDLHGNFMDYDYASDKETTGFGLAQTATLIKKARKENPNTLLVDNGDLIQGNPLGEYAVKDNILFKNKTHP 118 (1163)
T ss_pred ceEEEEEEEecccccccccccccCCCCCCcCHHHHHHHHHHHHHhCCCeEEEeCCCccCCChhhhHHhhhccccCCCcCH
Confidence 357999999999986421 1 012335666555 999998543211 123
Q ss_pred HHHHHhcCCCCcEEEEcCCCCCCC
Q psy12823 85 FNTWIGNLPHKHKLVIAGNHELSF 108 (295)
Q Consensus 85 ~~~~L~~l~~~pv~~V~GNHD~~~ 108 (295)
..+.+..+.. =.+++||||+.+
T Consensus 119 ~i~~mN~lgy--Da~~lGNHEFd~ 140 (1163)
T PRK09419 119 MIKAMNALGY--DAGTLGNHEFNY 140 (1163)
T ss_pred HHHHHhhcCc--cEEeeccccccc
Confidence 4566666643 478899999853
No 97
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=98.04 E-value=6.3e-06 Score=74.06 Aligned_cols=64 Identities=23% Similarity=0.532 Sum_probs=45.1
Q ss_pred EEEEEccCCCCCcccc-----c--c----CCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCC--C--cEEEEcCCCCCC
Q psy12823 43 RVVCMSDTHSLTPHIR-----F--N----IPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPH--K--HKLVIAGNHELS 107 (295)
Q Consensus 43 rI~~iSDlH~~~~~l~-----~--~----~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~--~--pv~~V~GNHD~~ 107 (295)
++.+|||+|+....+. . . ....+.+|++||++|+|.... +++++|.++.. + .++++.||||..
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~--eVld~L~~l~~~~~~~~vv~LrGNHE~~ 80 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETR--KVIDFLISLPEKHPKQRHVFLCGNHDFA 80 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHH--HHHHHHHHhhhcccccceEEEecCChHH
Confidence 6999999999987541 1 1 124678999999999997432 45566655431 1 478999999975
Q ss_pred C
Q psy12823 108 F 108 (295)
Q Consensus 108 ~ 108 (295)
+
T Consensus 81 ~ 81 (304)
T cd07421 81 F 81 (304)
T ss_pred H
Confidence 3
No 98
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=97.97 E-value=0.00017 Score=71.26 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=45.2
Q ss_pred CCCCCceEEEEEccCCCCCc-------cc----------ccc--C-CCCcEEEEcCCCCCCCCHHHH---HHHHHHHhcC
Q psy12823 36 QVDPKKVRVVCMSDTHSLTP-------HI----------RFN--I-PDGDIFIHAGDFTRCGGEEEV---TEFNTWIGNL 92 (295)
Q Consensus 36 ~~~~~~mrI~~iSDlH~~~~-------~l----------~~~--~-~~~D~viiaGDl~~~g~~~e~---~~~~~~L~~l 92 (295)
+.....++|++++|+|+... .+ +.+ . ...-+++.+||++.......+ +...+.+..+
T Consensus 29 ~~~~~~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s~~~~g~~~i~~mN~~ 108 (551)
T PRK09558 29 KDKTYKITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLI 108 (551)
T ss_pred cCCceEEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhhhhcCCchhHHHHhcC
Confidence 34567899999999999753 11 111 1 223578899999874322211 2345677777
Q ss_pred CCCcEEEEcCCCCCCC
Q psy12823 93 PHKHKLVIAGNHELSF 108 (295)
Q Consensus 93 ~~~pv~~V~GNHD~~~ 108 (295)
.. =.+++||||+.+
T Consensus 109 g~--Da~tlGNHEFD~ 122 (551)
T PRK09558 109 GY--DAMAVGNHEFDN 122 (551)
T ss_pred CC--CEEcccccccCc
Confidence 53 367789999864
No 99
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.97 E-value=0.00043 Score=70.76 Aligned_cols=68 Identities=16% Similarity=0.254 Sum_probs=44.4
Q ss_pred CCceEEEEEccCCCCCcc-------------c-c-------ccCCC-CcEEEEcCCCCCCCCHHHH------------HH
Q psy12823 39 PKKVRVVCMSDTHSLTPH-------------I-R-------FNIPD-GDIFIHAGDFTRCGGEEEV------------TE 84 (295)
Q Consensus 39 ~~~mrI~~iSDlH~~~~~-------------l-~-------~~~~~-~D~viiaGDl~~~g~~~e~------------~~ 84 (295)
...++|++++|+|..... + + .+... --+++-+||+.+......+ ..
T Consensus 113 ~~~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~~P 192 (814)
T PRK11907 113 TVDVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQHP 192 (814)
T ss_pred ceEEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcccchhhhccccccCcchH
Confidence 446999999999987431 1 0 11122 2478999999985332221 13
Q ss_pred HHHHHhcCCCCcEEEEcCCCCCCC
Q psy12823 85 FNTWIGNLPHKHKLVIAGNHELSF 108 (295)
Q Consensus 85 ~~~~L~~l~~~pv~~V~GNHD~~~ 108 (295)
..+.+..+.. =.+..||||+.+
T Consensus 193 ~i~amN~LGy--DA~tLGNHEFDy 214 (814)
T PRK11907 193 MYAALEALGF--DAGTLGNHEFNY 214 (814)
T ss_pred HHHHHhccCC--CEEEechhhccc
Confidence 5677777753 479999999854
No 100
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=97.91 E-value=1.4e-05 Score=69.49 Aligned_cols=69 Identities=20% Similarity=0.261 Sum_probs=45.9
Q ss_pred CCceEEEEEccCCCCCcc-c-------------------c--ccCCCCcEEEEcCCCCCCCC---HHHHHHHHHHHhcCC
Q psy12823 39 PKKVRVVCMSDTHSLTPH-I-------------------R--FNIPDGDIFIHAGDFTRCGG---EEEVTEFNTWIGNLP 93 (295)
Q Consensus 39 ~~~mrI~~iSDlH~~~~~-l-------------------~--~~~~~~D~viiaGDl~~~g~---~~e~~~~~~~L~~l~ 93 (295)
...-+.+++||+|++... + . ....+|+.||+.||+-.... ..+......+++.+.
T Consensus 17 l~~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~ 96 (235)
T COG1407 17 LPLGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLD 96 (235)
T ss_pred eccCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhc
Confidence 445678999999998753 1 0 13469999999999987543 223333333333333
Q ss_pred CCcEEEEcCCCCCC
Q psy12823 94 HKHKLVIAGNHELS 107 (295)
Q Consensus 94 ~~pv~~V~GNHD~~ 107 (295)
..-+++|.||||.+
T Consensus 97 ~~evi~i~GNHD~~ 110 (235)
T COG1407 97 EREVIIIRGNHDNG 110 (235)
T ss_pred cCcEEEEeccCCCc
Confidence 22499999999976
No 101
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.90 E-value=0.00036 Score=63.97 Aligned_cols=65 Identities=18% Similarity=0.126 Sum_probs=42.1
Q ss_pred eEEEEEccCCCCCcc------c-------cccC---CCCcEEEEcCCCCCCCCHHH-----------HHHHHHHHhcCCC
Q psy12823 42 VRVVCMSDTHSLTPH------I-------RFNI---PDGDIFIHAGDFTRCGGEEE-----------VTEFNTWIGNLPH 94 (295)
Q Consensus 42 mrI~~iSDlH~~~~~------l-------~~~~---~~~D~viiaGDl~~~g~~~e-----------~~~~~~~L~~l~~ 94 (295)
++|++++|+|..... + +... .+--+++-+||+++.+.... -+...+.+..+..
T Consensus 1 l~IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g~ 80 (313)
T cd08162 1 LQLLHTSDGESGLLAEDDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALGV 80 (313)
T ss_pred CeEEEecccccCccccCCHHHHHHHHHHHHHhhhccCCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccCC
Confidence 479999999997532 1 1110 23358999999987433211 1245677777753
Q ss_pred CcEEEEcCCCCCCC
Q psy12823 95 KHKLVIAGNHELSF 108 (295)
Q Consensus 95 ~pv~~V~GNHD~~~ 108 (295)
=.+..||||+.+
T Consensus 81 --Da~tlGNHEFD~ 92 (313)
T cd08162 81 --QAIALGNHEFDL 92 (313)
T ss_pred --cEEecccccccc
Confidence 479999999854
No 102
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=97.83 E-value=0.0007 Score=67.82 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=43.0
Q ss_pred ceEEEEEccCCCCCccc---------------------cccCC-CCcEEEEcCCCCCCCCHHHH-----------HHHHH
Q psy12823 41 KVRVVCMSDTHSLTPHI---------------------RFNIP-DGDIFIHAGDFTRCGGEEEV-----------TEFNT 87 (295)
Q Consensus 41 ~mrI~~iSDlH~~~~~l---------------------~~~~~-~~D~viiaGDl~~~g~~~e~-----------~~~~~ 87 (295)
.++|++++|+|...... +.+.. .--+++-+||+.+......+ ....+
T Consensus 2 ~l~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p~~~ 81 (626)
T TIGR01390 2 DLRIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVKNSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHPVYK 81 (626)
T ss_pred eEEEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCCCeEEEECCCcCCCccchhhhhhccccCCCcChHHH
Confidence 47999999999975321 01111 23588999999985433322 23556
Q ss_pred HHhcCCCCcEEEEcCCCCCCC
Q psy12823 88 WIGNLPHKHKLVIAGNHELSF 108 (295)
Q Consensus 88 ~L~~l~~~pv~~V~GNHD~~~ 108 (295)
.+..+.. =.+..||||+.+
T Consensus 82 ~mN~lgy--Da~tlGNHEFd~ 100 (626)
T TIGR01390 82 AMNLLKY--DVGNLGNHEFNY 100 (626)
T ss_pred HHhhcCc--cEEecccccccc
Confidence 6777653 479999999853
No 103
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=97.79 E-value=0.001 Score=66.90 Aligned_cols=69 Identities=16% Similarity=0.257 Sum_probs=45.4
Q ss_pred CCCceEEEEEccCCCCCcc-------------c--------cccCC-CCcEEEEcCCCCCCCCHHHHH-----------H
Q psy12823 38 DPKKVRVVCMSDTHSLTPH-------------I--------RFNIP-DGDIFIHAGDFTRCGGEEEVT-----------E 84 (295)
Q Consensus 38 ~~~~mrI~~iSDlH~~~~~-------------l--------~~~~~-~~D~viiaGDl~~~g~~~e~~-----------~ 84 (295)
....++|++++|+|..... + +.+.. .--+++-+||+.+......+. .
T Consensus 22 ~~~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~llvD~GD~~qGsp~~~~~~~~~~~~g~~~p 101 (649)
T PRK09420 22 ATVDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAKNSVLVDNGDLIQGSPLGDYMAAKGLKAGDVHP 101 (649)
T ss_pred CCceEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCCCEEEEECCCcCCCchhhhhhhhccccCCCcch
Confidence 3568999999999986431 1 01112 234789999999854333221 2
Q ss_pred HHHHHhcCCCCcEEEEcCCCCCCC
Q psy12823 85 FNTWIGNLPHKHKLVIAGNHELSF 108 (295)
Q Consensus 85 ~~~~L~~l~~~pv~~V~GNHD~~~ 108 (295)
..+.+..+.. =.+..||||+.+
T Consensus 102 ~i~amN~lgy--Da~tlGNHEFd~ 123 (649)
T PRK09420 102 VYKAMNTLDY--DVGNLGNHEFNY 123 (649)
T ss_pred HHHHHHhcCC--cEEeccchhhhc
Confidence 5677777753 489999999853
No 104
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=97.79 E-value=0.00026 Score=69.37 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=48.3
Q ss_pred CCCCceEEEEEccCCCCCc------------cc--------cc-cCCCCcEEEEcCCCCCCCCHHH----HHHHHHHHhc
Q psy12823 37 VDPKKVRVVCMSDTHSLTP------------HI--------RF-NIPDGDIFIHAGDFTRCGGEEE----VTEFNTWIGN 91 (295)
Q Consensus 37 ~~~~~mrI~~iSDlH~~~~------------~l--------~~-~~~~~D~viiaGDl~~~g~~~e----~~~~~~~L~~ 91 (295)
.....++|++++|+|.... .+ +. +..+..++|-+||+.+...... -+...+.|..
T Consensus 22 ~~~~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~ 101 (517)
T COG0737 22 AETVKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNA 101 (517)
T ss_pred cCceeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHHhh
Confidence 4577899999999999776 21 01 1224567999999998533322 2346677777
Q ss_pred CCCCcEEEEcCCCCCCC
Q psy12823 92 LPHKHKLVIAGNHELSF 108 (295)
Q Consensus 92 l~~~pv~~V~GNHD~~~ 108 (295)
++. =.+..||||+.+
T Consensus 102 m~y--Da~tiGNHEFd~ 116 (517)
T COG0737 102 LGY--DAMTLGNHEFDY 116 (517)
T ss_pred cCC--cEEeeccccccc
Confidence 753 489999999964
No 105
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.77 E-value=0.00082 Score=66.39 Aligned_cols=42 Identities=19% Similarity=0.144 Sum_probs=28.2
Q ss_pred cEEEEcCCCCCCCCHHH---HHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy12823 65 DIFIHAGDFTRCGGEEE---VTEFNTWIGNLPHKHKLVIAGNHELSF 108 (295)
Q Consensus 65 D~viiaGDl~~~g~~~e---~~~~~~~L~~l~~~pv~~V~GNHD~~~ 108 (295)
-+++.+||+++...... -+...+.+..+. .-.++.||||+.+
T Consensus 51 ~l~ldaGD~~~gs~~~~~~~g~~~i~~~N~~g--~Da~~lGNHEFd~ 95 (550)
T TIGR01530 51 ALVLHAGDAIIGTLYFTLFGGRADAALMNAAG--FDFFTLGNHEFDA 95 (550)
T ss_pred eEEEECCCCCCCccchhhcCCHHHHHHHhccC--CCEEEeccccccC
Confidence 58889999987432211 123466777765 3589999999853
No 106
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=97.61 E-value=0.00011 Score=65.99 Aligned_cols=64 Identities=20% Similarity=0.244 Sum_probs=45.3
Q ss_pred eEEEEEccCCCCCcccc-----ccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcC---CCCcEEEEcCCCCCC
Q psy12823 42 VRVVCMSDTHSLTPHIR-----FNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNL---PHKHKLVIAGNHELS 107 (295)
Q Consensus 42 mrI~~iSDlH~~~~~l~-----~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l---~~~pv~~V~GNHD~~ 107 (295)
+++.++||+|+....+. ......+.+++.||++++|.... +.+..+..+ ....++.+.||||..
T Consensus 28 ~~i~vvGDiHG~~~~l~~ll~~~~~~~~~~~vfLGD~VDrG~~s~--e~l~~l~~lk~~~p~~v~llrGNHE~~ 99 (271)
T smart00156 28 APVTVCGDIHGQFDDLLRLFDLNGPPPDTNYVFLGDYVDRGPFSI--EVILLLFALKILYPNRVVLLRGNHESR 99 (271)
T ss_pred CCEEEEEeCcCCHHHHHHHHHHcCCCCCceEEEeCCccCCCCChH--HHHHHHHHHHhcCCCCEEEEeccccHH
Confidence 57999999999877642 23356789999999999987432 333333322 112589999999985
No 107
>KOG2476|consensus
Probab=97.47 E-value=0.0019 Score=60.68 Aligned_cols=194 Identities=16% Similarity=0.160 Sum_probs=110.3
Q ss_pred eEEEEEccCCCCCccc-------cccCCCCcEEEEcCCCCCCC-CHHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCC
Q psy12823 42 VRVVCMSDTHSLTPHI-------RFNIPDGDIFIHAGDFTRCG-GEEEVTEFNTWIGNLPHKHKLVIAGNHELSFDPTFT 113 (295)
Q Consensus 42 mrI~~iSDlH~~~~~l-------~~~~~~~D~viiaGDl~~~g-~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~~~~~~~ 113 (295)
.||++++|.-+....+ ..+....|++|+.|+++... ..+++..+.+-.+.++. |+|+.-+|--... +
T Consensus 6 ~kILv~Gd~~Gr~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e~~~ykng~~~vPi-ptY~~g~~~~~~~--k-- 80 (528)
T KOG2476|consen 6 AKILVCGDVEGRFDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAEVEKYKNGTKKVPI-PTYFLGDNANETE--K-- 80 (528)
T ss_pred ceEEEEcCccccHHHHHHHHHHHhhcCCCceEEEEecccCCCccchhHHHHHhcCCccCce-eEEEecCCCCccc--e--
Confidence 6999999998876654 12345799999999998743 23454555555555653 8888877764210 1
Q ss_pred CCCCCCCCCCccccccccCCCCCCCchhhHHHHHhhhhhhccCCeEEccCC-cEEE-cceEEEeecCCCCC--CCCCccc
Q psy12823 114 HPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDE-ERIL-YGIKFYGTPWQPEF--CKWAFNV 189 (295)
Q Consensus 114 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~-~~~i-~gv~i~G~~~~~~~--~~~~~~~ 189 (295)
++.. ..-.+...|++||.+. .+.. .|++|.=.++.... +...|..
T Consensus 81 ---------y~~n----------------------~~g~Ei~~Nlt~Lg~~G~~~l~sGl~IaYLsG~e~~~~~~~~fs~ 129 (528)
T KOG2476|consen 81 ---------YFEN----------------------SDGKEIAENLTYLGRKGTYKLASGLTIAYLSGPESSEKGESKFSQ 129 (528)
T ss_pred ---------eccc----------------------CCCcccccceeeecccceEeecCCcEEEEeeccccccccccccCH
Confidence 1110 0111235688999864 3444 37766543321100 0012332
Q ss_pred Cchhhhhh--hccCCCCCccEEEecCCCCCCCCCC----cCCCccCcHHHHHHHHhhCCCcEEEecc--ccCCCCeee--
Q psy12823 190 PRGEACLS--KWQDIPADTDVLISHTPPIGHGDLC----CTGLRAGCVELLTTVQQRVKPKYHVFGH--VHEGYGITS-- 259 (295)
Q Consensus 190 ~~~~~~~~--~~~~~~~~~~IlvtH~pp~~~~D~~----~~~~~~g~~~l~~~l~~~~~~~~~l~GH--~H~~~~~~~-- 259 (295)
...+++.. ..+...+++||++|-.+|.++..+. ......|| .+...|+.+.+|+|+++|= +|....-.+
T Consensus 130 ~dv~~l~~~~~~~~~~~gvDILlTseWP~~v~e~~ss~~~~~~~~gs-~lvs~La~~lkPRYHFa~~~~v~YErePyrn~ 208 (528)
T KOG2476|consen 130 ADVDELRHRLDTQKEFKGVDILLTSEWPADVQERNSSLPESKRLCGS-ELVSELAAELKPRYHFAGSDGVFYEREPYRNH 208 (528)
T ss_pred HHHHHHhcccccccccCCccEEEecCCcchhhhccccCccccCCcch-HHHHHHHHhcCcceEeccCCCceeecccccch
Confidence 22223221 1123357899999999998764421 12334666 4555665689999999974 565443211
Q ss_pred -------cCcEEEEeCCcCC
Q psy12823 260 -------DGRIIFINASTCD 272 (295)
Q Consensus 260 -------~g~~~~vn~g~~~ 272 (295)
.-.|.+|+-+-.+
T Consensus 209 ~~~~~~~~h~TRFI~LA~vG 228 (528)
T KOG2476|consen 209 AALNEEAGHVTRFIALAKVG 228 (528)
T ss_pred hhhcccccceeeeeehhhcC
Confidence 1246677666554
No 108
>KOG3770|consensus
Probab=97.44 E-value=0.0008 Score=65.23 Aligned_cols=46 Identities=26% Similarity=0.379 Sum_probs=30.6
Q ss_pred CCCcEEEEcCCCCCCCC----HH----HHHHHHHHHhc-CCCCcEEEEcCCCCCC
Q psy12823 62 PDGDIFIHAGDFTRCGG----EE----EVTEFNTWIGN-LPHKHKLVIAGNHELS 107 (295)
Q Consensus 62 ~~~D~viiaGDl~~~g~----~~----e~~~~~~~L~~-l~~~pv~~V~GNHD~~ 107 (295)
.++|+|+.+||...... .+ .+..+.+.+.+ .+..|||...||||..
T Consensus 209 ~~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~ 263 (577)
T KOG3770|consen 209 KDIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIH 263 (577)
T ss_pred CCCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCC
Confidence 45999999999987532 11 22233344443 3445899999999985
No 109
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=97.41 E-value=0.00029 Score=64.30 Aligned_cols=63 Identities=22% Similarity=0.273 Sum_probs=44.2
Q ss_pred EEEEEccCCCCCcccc-----ccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCC---CCcEEEEcCCCCCC
Q psy12823 43 RVVCMSDTHSLTPHIR-----FNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLP---HKHKLVIAGNHELS 107 (295)
Q Consensus 43 rI~~iSDlH~~~~~l~-----~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~---~~pv~~V~GNHD~~ 107 (295)
++.+++|+|++...+. ...+..|.+++.||++++|...- +.+..|..++ ...++.+.||||..
T Consensus 44 ~i~ViGDIHG~~~dL~~l~~~~g~~~~~~ylFLGDyVDRG~~s~--Evi~lL~~lki~~p~~v~lLRGNHE~~ 114 (305)
T cd07416 44 PVTVCGDIHGQFYDLLKLFEVGGSPANTRYLFLGDYVDRGYFSI--ECVLYLWALKILYPKTLFLLRGNHECR 114 (305)
T ss_pred CEEEEEeCCCCHHHHHHHHHhcCCCCCceEEEECCccCCCCChH--HHHHHHHHHHhhcCCCEEEEeCCCcHH
Confidence 5899999999887642 23345689999999999987432 3344443331 12589999999974
No 110
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=97.33 E-value=0.00035 Score=64.04 Aligned_cols=64 Identities=20% Similarity=0.239 Sum_probs=43.9
Q ss_pred eEEEEEccCCCCCcccc-----ccCC-CCcEEEEcCCCCCCCCHHHHHHHHHHHhcCC---CCcEEEEcCCCCCC
Q psy12823 42 VRVVCMSDTHSLTPHIR-----FNIP-DGDIFIHAGDFTRCGGEEEVTEFNTWIGNLP---HKHKLVIAGNHELS 107 (295)
Q Consensus 42 mrI~~iSDlH~~~~~l~-----~~~~-~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~---~~pv~~V~GNHD~~ 107 (295)
.++.+++|+|+....+. ...+ .-+.+++.||++|+|...- +.+.+|-.++ ...++++.||||..
T Consensus 51 ~~~~vvGDiHG~~~dL~~il~~~g~~~~~~~~lFLGDyVDRG~~s~--Evl~ll~~lk~~~p~~v~llRGNHE~~ 123 (321)
T cd07420 51 KQVTICGDLHGKLDDLFLIFYKNGLPSPENPYVFNGDFVDRGKRSI--EILIILFAFFLVYPNEVHLNRGNHEDH 123 (321)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHcCCCCccceEEEeccccCCCCCcH--HHHHHHHHHhhcCCCcEEEecCchhhh
Confidence 47899999999987651 1222 3468999999999997432 3444443322 12589999999975
No 111
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=97.27 E-value=0.0004 Score=62.79 Aligned_cols=63 Identities=21% Similarity=0.198 Sum_probs=43.5
Q ss_pred EEEEEccCCCCCcccc-----ccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCC---CCcEEEEcCCCCCC
Q psy12823 43 RVVCMSDTHSLTPHIR-----FNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLP---HKHKLVIAGNHELS 107 (295)
Q Consensus 43 rI~~iSDlH~~~~~l~-----~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~---~~pv~~V~GNHD~~ 107 (295)
++.+++|+|+....+. ......+.+++.||++++|.... +.+..+..++ ...++++.||||..
T Consensus 43 ~i~vvGDIHG~~~dL~~ll~~~~~~~~~~~lfLGDyVDRG~~s~--evl~ll~~lk~~~p~~v~llrGNHE~~ 113 (285)
T cd07415 43 PVTVCGDIHGQFYDLLELFRVGGDPPDTNYLFLGDYVDRGYYSV--ETFLLLLALKVRYPDRITLLRGNHESR 113 (285)
T ss_pred CEEEEEeCCCCHHHHHHHHHHcCCCCCCeEEEEeEECCCCcCHH--HHHHHHHHHhhcCCCcEEEEecccchH
Confidence 4899999999876642 22345678999999999987432 3333333321 12589999999974
No 112
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=97.25 E-value=0.00041 Score=62.95 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=43.5
Q ss_pred EEEEEccCCCCCcccc-----ccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCC--C-CcEEEEcCCCCCC
Q psy12823 43 RVVCMSDTHSLTPHIR-----FNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLP--H-KHKLVIAGNHELS 107 (295)
Q Consensus 43 rI~~iSDlH~~~~~l~-----~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~--~-~pv~~V~GNHD~~ 107 (295)
++.++||+|++...+. ...+..+-+++.||++++|.... +.+..+..++ . ..++++.||||..
T Consensus 51 ~i~viGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~--e~i~ll~~lk~~~p~~i~llrGNHE~~ 121 (293)
T cd07414 51 PLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSL--ETICLLLAYKIKYPENFFLLRGNHECA 121 (293)
T ss_pred ceEEEEecCCCHHHHHHHHHhcCCCCcceEEEEeeEecCCCCcH--HHHHHHHHhhhhCCCcEEEEecccchh
Confidence 5899999999876541 23345678999999999986432 3333333321 1 2589999999985
No 113
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=97.11 E-value=0.00074 Score=61.88 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=43.5
Q ss_pred EEEEEccCCCCCcccc-----ccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCC--C-CcEEEEcCCCCCC
Q psy12823 43 RVVCMSDTHSLTPHIR-----FNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLP--H-KHKLVIAGNHELS 107 (295)
Q Consensus 43 rI~~iSDlH~~~~~l~-----~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~--~-~pv~~V~GNHD~~ 107 (295)
++.+++|+|+....+. ......+-+|+.||++++|.... +.+..+..++ . ..++.+.||||..
T Consensus 60 ~i~vvGDIHG~~~dL~~l~~~~g~~~~~~ylfLGDyVDRG~~s~--evl~ll~~lki~~p~~v~llRGNHE~~ 130 (320)
T PTZ00480 60 PLKICGDVHGQYFDLLRLFEYGGYPPESNYLFLGDYVDRGKQSL--ETICLLLAYKIKYPENFFLLRGNHECA 130 (320)
T ss_pred CeEEEeecccCHHHHHHHHHhcCCCCcceEEEeceecCCCCCcH--HHHHHHHHhcccCCCceEEEecccchh
Confidence 4999999999876541 23345678899999999986432 3344443332 1 2589999999985
No 114
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=97.11 E-value=0.00076 Score=63.01 Aligned_cols=64 Identities=23% Similarity=0.379 Sum_probs=43.4
Q ss_pred EEEEEccCCCCCcccc-----ccCCC-CcEEEEcCCCCCCCCHHHHHHHHHHHhcCC---CCcEEEEcCCCCCCC
Q psy12823 43 RVVCMSDTHSLTPHIR-----FNIPD-GDIFIHAGDFTRCGGEEEVTEFNTWIGNLP---HKHKLVIAGNHELSF 108 (295)
Q Consensus 43 rI~~iSDlH~~~~~l~-----~~~~~-~D~viiaGDl~~~g~~~e~~~~~~~L~~l~---~~pv~~V~GNHD~~~ 108 (295)
++.+++|+|+....+. ..... -+.+|+.||++|+|.... +.+.+|..++ ...++++.||||...
T Consensus 67 ~i~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDyVDRGp~Sl--Evl~lL~~lki~~p~~v~lLRGNHE~~~ 139 (377)
T cd07418 67 EVVVVGDVHGQLHDVLFLLEDAGFPDQNRFYVFNGDYVDRGAWGL--ETFLLLLSWKVLLPDRVYLLRGNHESKF 139 (377)
T ss_pred CEEEEEecCCCHHHHHHHHHHhCCCCCCceEEEeccccCCCCChH--HHHHHHHHHhhccCCeEEEEeeeccccc
Confidence 5999999999987642 12222 246899999999987432 4444443332 125899999999853
No 115
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.05 E-value=0.013 Score=52.05 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=41.8
Q ss_pred EEEEEccCCCCCcc--c----c--ccCCCCcEEEEcCCCCCCCC-HHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy12823 43 RVVCMSDTHSLTPH--I----R--FNIPDGDIFIHAGDFTRCGG-EEEVTEFNTWIGNLPHKHKLVIAGNHELS 107 (295)
Q Consensus 43 rI~~iSDlH~~~~~--l----~--~~~~~~D~viiaGDl~~~g~-~~e~~~~~~~L~~l~~~pv~~V~GNHD~~ 107 (295)
||++++|+=+.... + . .+..++|++|..||....+. .. ....+.|..+.. - .+..|||++.
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~--~~~~~~L~~~G~-D-~iTlGNH~fD 70 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGIT--PKIAKELLSAGV-D-VITMGNHTWD 70 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCCEEEECCccccCCCCCC--HHHHHHHHhcCC-C-EEEecccccC
Confidence 68999999775432 1 1 12347899999999987552 22 356778887764 3 5666999974
No 116
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=97.03 E-value=0.0011 Score=60.52 Aligned_cols=63 Identities=22% Similarity=0.212 Sum_probs=43.5
Q ss_pred EEEEEccCCCCCcccc-----ccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCC---CCcEEEEcCCCCCC
Q psy12823 43 RVVCMSDTHSLTPHIR-----FNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLP---HKHKLVIAGNHELS 107 (295)
Q Consensus 43 rI~~iSDlH~~~~~l~-----~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~---~~pv~~V~GNHD~~ 107 (295)
.+.+++|+|+....+. ......+.+++.||++++|.... +.+..|..++ ...++++.||||..
T Consensus 44 ~i~vvGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~--evl~ll~~lk~~~p~~v~llrGNHE~~ 114 (303)
T PTZ00239 44 PVNVCGDIHGQFYDLQALFKEGGDIPNANYIFIGDFVDRGYNSV--ETMEYLLCLKVKYPGNITLLRGNHESR 114 (303)
T ss_pred CEEEEEeCCCCHHHHHHHHHhcCCCCCceEEEeeeEcCCCCCHH--HHHHHHHHhhhcCCCcEEEEecccchH
Confidence 3899999999877642 12245678999999999997432 3444443332 12589999999974
No 117
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=97.00 E-value=0.00092 Score=60.68 Aligned_cols=62 Identities=23% Similarity=0.268 Sum_probs=42.1
Q ss_pred EEEEccCCCCCcccc-----ccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhc--C-CCCcEEEEcCCCCCC
Q psy12823 44 VVCMSDTHSLTPHIR-----FNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGN--L-PHKHKLVIAGNHELS 107 (295)
Q Consensus 44 I~~iSDlH~~~~~l~-----~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~--l-~~~pv~~V~GNHD~~ 107 (295)
+.+++|+|+....+. ...+..+-+++.||++++|.... +.+..+-. + ....++.+.||||..
T Consensus 54 ~~ViGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~--evl~ll~~lk~~~p~~v~llrGNHE~~ 123 (294)
T PTZ00244 54 VRVCGDTHGQYYDLLRIFEKCGFPPYSNYLFLGDYVDRGKHSV--ETITLQFCYKIVYPENFFLLRGNHECA 123 (294)
T ss_pred ceeeccCCCCHHHHHHHHHHcCCCCcccEEEeeeEecCCCCHH--HHHHHHHHHhhccCCeEEEEecccchH
Confidence 789999999887652 13345567889999999987432 33333322 1 112589999999975
No 118
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=96.91 E-value=0.0014 Score=60.09 Aligned_cols=65 Identities=20% Similarity=0.255 Sum_probs=43.9
Q ss_pred ceEEEEEccCCCCCcccc-----ccC-CCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCC---CCcEEEEcCCCCCC
Q psy12823 41 KVRVVCMSDTHSLTPHIR-----FNI-PDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLP---HKHKLVIAGNHELS 107 (295)
Q Consensus 41 ~mrI~~iSDlH~~~~~l~-----~~~-~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~---~~pv~~V~GNHD~~ 107 (295)
..++.+++|+|+....+. ... ..-|.+++.||++|+|...- +.+..|..++ ...++.+.||||..
T Consensus 59 ~~~~~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDyVDRG~~S~--Evl~ll~~lki~~p~~v~lLRGNHE~~ 132 (316)
T cd07417 59 GEKITVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFVDRGSFSV--EVILTLFAFKLLYPNHFHLNRGNHETD 132 (316)
T ss_pred CceeEEeecccCCHHHHHHHHHhcCCCCccCeEEEEeeEecCCCChH--HHHHHHHHhhhccCCceEEEeeccchH
Confidence 357999999999876542 111 23468999999999997432 3444443321 12589999999974
No 119
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=96.88 E-value=0.002 Score=59.00 Aligned_cols=63 Identities=22% Similarity=0.322 Sum_probs=41.0
Q ss_pred EEEEEccCCCCCcccc-----ccCC----CC----cEEEEcCCCCCCCCHHHHHHHHHHHhcCC---CCcEEEEcCCCCC
Q psy12823 43 RVVCMSDTHSLTPHIR-----FNIP----DG----DIFIHAGDFTRCGGEEEVTEFNTWIGNLP---HKHKLVIAGNHEL 106 (295)
Q Consensus 43 rI~~iSDlH~~~~~l~-----~~~~----~~----D~viiaGDl~~~g~~~e~~~~~~~L~~l~---~~pv~~V~GNHD~ 106 (295)
.+.+++|+|++...+. ...+ .. .-+++.||++|+|.... +.+..|..+. ...++.+.||||.
T Consensus 49 ~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDRGp~s~--evl~ll~~lk~~~p~~v~lLRGNHE~ 126 (311)
T cd07419 49 PIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSNSL--ETICLLLALKVKYPNQIHLIRGNHED 126 (311)
T ss_pred CEEEEEeccCCHHHHHHHHHHcCCCcccccCCCcCceEEEECCccCCCCChH--HHHHHHHHhhhcCCCcEEEeccccch
Confidence 3888999999876541 1111 11 24789999999987432 4444443332 1258999999997
Q ss_pred C
Q psy12823 107 S 107 (295)
Q Consensus 107 ~ 107 (295)
.
T Consensus 127 ~ 127 (311)
T cd07419 127 R 127 (311)
T ss_pred H
Confidence 4
No 120
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=96.53 E-value=0.059 Score=48.19 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=42.3
Q ss_pred eEEEEEccCCCCCcc--c-----c-ccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy12823 42 VRVVCMSDTHSLTPH--I-----R-FNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELS 107 (295)
Q Consensus 42 mrI~~iSDlH~~~~~--l-----~-~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~ 107 (295)
|||++++|+=+.... + + .+..++|++|..||.+..|. ..-.+..+.|.+... -++ ..|||.+.
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~-Gi~~~~~~~L~~~Gv-Dvi-T~GNH~~D 71 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGK-GLTLKIYEFLKQSGV-NYI-TMGNHTWF 71 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCC-CCCHHHHHHHHhcCC-CEE-Eccchhcc
Confidence 899999999776422 1 1 13347999999999986542 111356677777764 444 44999984
No 121
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=96.30 E-value=0.0049 Score=52.90 Aligned_cols=65 Identities=12% Similarity=0.249 Sum_probs=38.7
Q ss_pred EEEEccCCCCCccc----------ccc-CCCCcEEEEcCCCCCCCCHH---------------HHHHHHHHHhcCC-CCc
Q psy12823 44 VVCMSDTHSLTPHI----------RFN-IPDGDIFIHAGDFTRCGGEE---------------EVTEFNTWIGNLP-HKH 96 (295)
Q Consensus 44 I~~iSDlH~~~~~l----------~~~-~~~~D~viiaGDl~~~g~~~---------------e~~~~~~~L~~l~-~~p 96 (295)
|+++||+|.+...+ ... ..+++++|++|++++..... ....+.+.+.++. ..+
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQ 80 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSE
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccE
Confidence 78999999985431 134 67899999999999852211 1122334445543 347
Q ss_pred EEEEcCCCCCCC
Q psy12823 97 KLVIAGNHELSF 108 (295)
Q Consensus 97 v~~V~GNHD~~~ 108 (295)
|++|||++|...
T Consensus 81 vvlvPg~~D~~~ 92 (209)
T PF04042_consen 81 VVLVPGPNDPTS 92 (209)
T ss_dssp EEEE--TTCTT-
T ss_pred EEEeCCCccccc
Confidence 999999999864
No 122
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=93.45 E-value=2.5 Score=36.89 Aligned_cols=56 Identities=14% Similarity=-0.022 Sum_probs=34.8
Q ss_pred CccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCCCcEEEeccccCCCCeeecCcEEEE
Q psy12823 205 DTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGITSDGRIIFI 266 (295)
Q Consensus 205 ~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~~~~~l~GH~H~~~~~~~~g~~~~v 266 (295)
+..|+++|-..-. +... .....++.+.+. ...+|+++.||.|..+..+..++++++
T Consensus 176 D~vIv~~H~G~e~--~~~p---~~~~~~la~~l~-~~G~D~IiG~H~Hv~q~~E~~~~~~I~ 231 (239)
T cd07381 176 DIVIVSLHWGVEY--SYYP---TPEQRELARALI-DAGADLVIGHHPHVLQGIEIYKGKLIF 231 (239)
T ss_pred CEEEEEecCcccC--CCCC---CHHHHHHHHHHH-HCCCCEEEcCCCCcCCCeEEECCEEEE
Confidence 4567778876421 1110 011134444442 457999999999999888777776655
No 123
>KOG0373|consensus
Probab=92.94 E-value=0.16 Score=43.66 Aligned_cols=71 Identities=32% Similarity=0.444 Sum_probs=44.4
Q ss_pred eecCCCCCCCCCCceEEEEEccCCCCCccc----cc--cCCCCcEEEEcCCCCCCCCH--HHHHHHHHHHhcCCCCcEEE
Q psy12823 28 INVQPPKTQVDPKKVRVVCMSDTHSLTPHI----RF--NIPDGDIFIHAGDFTRCGGE--EEVTEFNTWIGNLPHKHKLV 99 (295)
Q Consensus 28 ~~~~~~~~~~~~~~mrI~~iSDlH~~~~~l----~~--~~~~~D~viiaGDl~~~g~~--~e~~~~~~~L~~l~~~pv~~ 99 (295)
-|+||-.+| +-+.+|+|+....+ +. ..++.. -|+.||++++|.. +.+..++-...+.+. .+-.
T Consensus 39 sNvqPV~tP-------VTvCGDIHGQFyDL~eLFrtgG~vP~tn-YiFmGDfVDRGyySLEtfT~l~~LkaryP~-~ITL 109 (306)
T KOG0373|consen 39 SNVQPVSTP-------VTVCGDIHGQFYDLLELFRTGGQVPDTN-YIFMGDFVDRGYYSLETFTLLLLLKARYPA-KITL 109 (306)
T ss_pred cCccccCCC-------eeEeeccchhHHHHHHHHHhcCCCCCcc-eEEeccccccccccHHHHHHHHHHhhcCCc-eeEE
Confidence 455655554 56899999987664 11 223333 5678999999863 333333333333443 5889
Q ss_pred EcCCCCCC
Q psy12823 100 IAGNHELS 107 (295)
Q Consensus 100 V~GNHD~~ 107 (295)
+.|||+..
T Consensus 110 lRGNHEsR 117 (306)
T KOG0373|consen 110 LRGNHESR 117 (306)
T ss_pred eeccchhh
Confidence 99999974
No 124
>KOG0371|consensus
Probab=92.88 E-value=0.11 Score=45.82 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=42.4
Q ss_pred EEEEEccCCCCCccc----cccCCCCcE-EEEcCCCCCCCCHHHHHHHHHHHhcCC--C-CcEEEEcCCCCCC
Q psy12823 43 RVVCMSDTHSLTPHI----RFNIPDGDI-FIHAGDFTRCGGEEEVTEFNTWIGNLP--H-KHKLVIAGNHELS 107 (295)
Q Consensus 43 rI~~iSDlH~~~~~l----~~~~~~~D~-viiaGDl~~~g~~~e~~~~~~~L~~l~--~-~pv~~V~GNHD~~ 107 (295)
-+.+++|+|+....+ ++.-..+|. .++.||.+++|.... +....|-.++ . ..|.++.||||..
T Consensus 61 pvtvcGDvHGqf~dl~ELfkiGG~~pdtnylfmGDyvdrGy~Sv--etVS~lva~Kvry~~rvtilrGNHEsr 131 (319)
T KOG0371|consen 61 PVTVCGDVHGQFHDLIELFKIGGLAPDTNYLFMGDYVDRGYYSV--ETVSLLVALKVRYPDRVTILRGNHESR 131 (319)
T ss_pred ceEEecCcchhHHHHHHHHHccCCCCCcceeeeeeecccccchH--HHHHHHHHhhccccceeEEecCchHHH
Confidence 478999999987654 222233443 677899999987543 4445554443 1 1589999999974
No 125
>KOG0372|consensus
Probab=91.94 E-value=0.3 Score=42.79 Aligned_cols=64 Identities=20% Similarity=0.173 Sum_probs=39.8
Q ss_pred EEEEccCCCCCccc----cc-cCCCCcEEEEcCCCCCCCCHH-HHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy12823 44 VVCMSDTHSLTPHI----RF-NIPDGDIFIHAGDFTRCGGEE-EVTEFNTWIGNLPHKHKLVIAGNHELS 107 (295)
Q Consensus 44 I~~iSDlH~~~~~l----~~-~~~~~D~viiaGDl~~~g~~~-e~~~~~~~L~~l~~~pv~~V~GNHD~~ 107 (295)
+.+++|+|+....+ +. ....-.--++.||++|+|-.. |.--++-.|+-.-...+..+.|||+..
T Consensus 45 vtvcGDIHGQf~Dllelf~igG~~~~t~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsR 114 (303)
T KOG0372|consen 45 VTVCGDIHGQFYDLLELFRIGGDVPETNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESR 114 (303)
T ss_pred cEEeecccchHHHHHHHHHhCCCCCCCceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchhh
Confidence 67899999987654 11 112334467899999988532 211223333432223589999999975
No 126
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=91.86 E-value=0.64 Score=41.93 Aligned_cols=71 Identities=18% Similarity=0.126 Sum_probs=46.2
Q ss_pred CCCceEEEEEccCCCCCcc----cc-----c-c----CCCCcEEEEcCCCCCCC------CHHHHHHHHHHHhc-----C
Q psy12823 38 DPKKVRVVCMSDTHSLTPH----IR-----F-N----IPDGDIFIHAGDFTRCG------GEEEVTEFNTWIGN-----L 92 (295)
Q Consensus 38 ~~~~mrI~~iSDlH~~~~~----l~-----~-~----~~~~D~viiaGDl~~~g------~~~e~~~~~~~L~~-----l 92 (295)
+....+++++||+|++... |+ . + ...|-++|++|+++... ....|++.++.|.. .
T Consensus 24 ~~~~~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~f 103 (291)
T PTZ00235 24 NDKRHNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKF 103 (291)
T ss_pred CCCceEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhC
Confidence 5667899999999998764 21 1 1 12488999999998752 12234444444332 1
Q ss_pred C----CCcEEEEcCCCCCCC
Q psy12823 93 P----HKHKLVIAGNHELSF 108 (295)
Q Consensus 93 ~----~~pv~~V~GNHD~~~ 108 (295)
+ ....++|||-.|.|.
T Consensus 104 p~L~~~s~fVFVPGpnDPw~ 123 (291)
T PTZ00235 104 KLILEHCYLIFIPGINDPCA 123 (291)
T ss_pred hHHHhcCeEEEECCCCCCCc
Confidence 1 125899999999863
No 127
>KOG0374|consensus
Probab=91.42 E-value=0.19 Score=46.37 Aligned_cols=65 Identities=18% Similarity=0.294 Sum_probs=41.2
Q ss_pred EEEEEccCCCCCccc-c---c-c-CCCCcEEEEcCCCCCCCCHHH-HHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy12823 43 RVVCMSDTHSLTPHI-R---F-N-IPDGDIFIHAGDFTRCGGEEE-VTEFNTWIGNLPHKHKLVIAGNHELS 107 (295)
Q Consensus 43 rI~~iSDlH~~~~~l-~---~-~-~~~~D~viiaGDl~~~g~~~e-~~~~~~~L~~l~~~pv~~V~GNHD~~ 107 (295)
-|.+++|+|+....+ + . . .+.-.-.++.||.+|+|...- ....+-.++..-...++.+.|||+..
T Consensus 60 PV~i~GDiHGq~~DLlrlf~~~g~~pp~~~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~ 131 (331)
T KOG0374|consen 60 PVKIVGDIHGQFGDLLRLFDLLGSFPPDQNYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECA 131 (331)
T ss_pred CEEEEccCcCCHHHHHHHHHhcCCCCCcccEEEecccccCCccceEEeehhhhhhhhCCceEEEeccccccc
Confidence 488999999988764 1 1 2 333455888999999987421 11112222222112699999999986
No 128
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=87.38 E-value=9.1 Score=33.65 Aligned_cols=56 Identities=11% Similarity=-0.120 Sum_probs=35.7
Q ss_pred CccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCCCcEEEeccccCCCCeeecCcEEEE
Q psy12823 205 DTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGITSDGRIIFI 266 (295)
Q Consensus 205 ~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~~~~~l~GH~H~~~~~~~~g~~~~v 266 (295)
+..|++.|...-. .... .....++...+. ...+|+++.+|.|....++..++++++
T Consensus 185 D~vIv~~HwG~e~--~~~p---~~~q~~~a~~li-daGaDiIiG~HpHv~q~~E~y~~~~I~ 240 (250)
T PF09587_consen 185 DVVIVSLHWGIEY--ENYP---TPEQRELARALI-DAGADIIIGHHPHVIQPVEIYKGKPIF 240 (250)
T ss_pred CEEEEEeccCCCC--CCCC---CHHHHHHHHHHH-HcCCCEEEeCCCCcccceEEECCEEEE
Confidence 4567778876321 1110 112234555554 467999999999999998877766655
No 129
>KOG0375|consensus
Probab=86.49 E-value=0.82 Score=42.23 Aligned_cols=64 Identities=20% Similarity=0.266 Sum_probs=40.5
Q ss_pred EEEEccCCCCCcccc--cc---CCCCcEEEEcCCCCCCCCHH-HHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy12823 44 VVCMSDTHSLTPHIR--FN---IPDGDIFIHAGDFTRCGGEE-EVTEFNTWIGNLPHKHKLVIAGNHELS 107 (295)
Q Consensus 44 I~~iSDlH~~~~~l~--~~---~~~~D~viiaGDl~~~g~~~-e~~~~~~~L~~l~~~pv~~V~GNHD~~ 107 (295)
|-+.+|+|+....|. +. .+.----++.||.+|+|... |..-++..|+-.-.+..+.+.|||+..
T Consensus 90 iTVCGDIHGQf~DLmKLFEVGG~PA~t~YLFLGDYVDRGyFSiECvlYLwsLKi~yp~tl~lLRGNHECr 159 (517)
T KOG0375|consen 90 ITVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWSLKINYPKTLFLLRGNHECR 159 (517)
T ss_pred eeEecccchHHHHHHHHHHccCCcccceeEeeccccccceeeeehHHHHHHHhcCCCCeEEEecCCcchh
Confidence 789999999876541 21 12233467789999998753 222233344432223478999999985
No 130
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=83.17 E-value=0.78 Score=45.40 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=34.6
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy12823 62 PDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELS 107 (295)
Q Consensus 62 ~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~ 107 (295)
.-+|.+-+.||++|+|.... .+++.|.... -|=+-+||||.-
T Consensus 183 L~VDhLHIvGDIyDRGp~pd--~ImD~Lm~~h--svDIQWGNHDIl 224 (640)
T PF06874_consen 183 LAVDHLHIVGDIYDRGPRPD--KIMDRLMNYH--SVDIQWGNHDIL 224 (640)
T ss_pred HhhhheeecccccCCCCChh--HHHHHHhcCC--CccccccchHHH
Confidence 46899999999999998766 6778887753 477899999983
No 131
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=75.98 E-value=7.2 Score=34.05 Aligned_cols=56 Identities=13% Similarity=-0.100 Sum_probs=34.8
Q ss_pred CccEEEecCCCCCCCCCCcCCCccCcHHHHHHHHhhCCCcEEEeccccCCCCeeecCcEEEE
Q psy12823 205 DTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGITSDGRIIFI 266 (295)
Q Consensus 205 ~~~IlvtH~pp~~~~D~~~~~~~~g~~~l~~~l~~~~~~~~~l~GH~H~~~~~~~~g~~~~v 266 (295)
+..|+++|-..-.. ... .....++.+.+. ...+|+++.||.|.....+..++++++
T Consensus 174 D~vIv~~H~G~e~~--~~p---~~~~~~~A~~l~-~~G~DvIiG~H~H~~~~~e~~~~~~I~ 229 (239)
T smart00854 174 DVVIVSLHWGVEYQ--YEP---TDEQRELAHALI-DAGADVVIGHHPHVLQPIEIYKGKLIA 229 (239)
T ss_pred CEEEEEecCccccC--CCC---CHHHHHHHHHHH-HcCCCEEEcCCCCcCCceEEECCEEEE
Confidence 45678888775311 100 011134555553 457999999999998887776666554
No 132
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=75.48 E-value=3.8 Score=35.75 Aligned_cols=31 Identities=16% Similarity=-0.005 Sum_probs=24.9
Q ss_pred CCcEEEeccccCCCCeeecCcEEEEeCCcCCC
Q psy12823 242 KPKYHVFGHVHEGYGITSDGRIIFINASTCDL 273 (295)
Q Consensus 242 ~~~~~l~GH~H~~~~~~~~g~~~~vn~g~~~~ 273 (295)
..++++|||+|.... ...+.++.||+|++..
T Consensus 181 ~~~~vv~GHt~~~~~-~~~~~~i~IDtGav~g 211 (234)
T cd07423 181 GDALVVYGHTPVPEP-RWLNNTINIDTGCVFG 211 (234)
T ss_pred CCeEEEECCCCCccc-eEeCCEEEEECCCCCC
Confidence 457899999999864 4556789999999854
No 133
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=75.05 E-value=8.2 Score=37.16 Aligned_cols=39 Identities=26% Similarity=0.236 Sum_probs=16.9
Q ss_pred CCCceEEEEEccCCCCCccc----cccC-CCCcEEEEcCCCCCC
Q psy12823 38 DPKKVRVVCMSDTHSLTPHI----RFNI-PDGDIFIHAGDFTRC 76 (295)
Q Consensus 38 ~~~~mrI~~iSDlH~~~~~l----~~~~-~~~D~viiaGDl~~~ 76 (295)
....+||++.|+-+...... .... .++|++|++||.+..
T Consensus 102 ~~~~~r~a~~SC~~~~~~~~~~~~~~a~~~~~D~~l~lGD~IY~ 145 (453)
T PF09423_consen 102 DPDPFRFAFGSCQNYEDGYFPAYRRIAERDDPDFVLHLGDQIYE 145 (453)
T ss_dssp ----EEEEEE----CCC---HHHHHHTT-S--SEEEE-S-SS--
T ss_pred CCCceEEEEECCCCcccChHHHHHhhhccCCCcEEEEeCCeeec
Confidence 34569999999998754322 1233 589999999998753
No 134
>KOG3818|consensus
Probab=73.78 E-value=12 Score=35.72 Aligned_cols=72 Identities=15% Similarity=0.272 Sum_probs=48.4
Q ss_pred CCceEEEEEccCCCCCccc----c-----ccCCCCcEEEEcCCCCCCC----CHHHHHHHHHHHhcCC--------CCcE
Q psy12823 39 PKKVRVVCMSDTHSLTPHI----R-----FNIPDGDIFIHAGDFTRCG----GEEEVTEFNTWIGNLP--------HKHK 97 (295)
Q Consensus 39 ~~~mrI~~iSDlH~~~~~l----~-----~~~~~~D~viiaGDl~~~g----~~~e~~~~~~~L~~l~--------~~pv 97 (295)
...-.++++||+|++.... + .+-..|-++|+||-++... +...++..+.+|..+- ....
T Consensus 280 ~~d~~fVfLSdV~LD~~~vm~aL~kifqgy~~~pP~~iIlcG~FtS~p~~~~s~~~~k~~f~~LA~~l~~~~~~~ekT~f 359 (525)
T KOG3818|consen 280 NTDTSFVFLSDVFLDDKKVMEALRKIFQGYKDAPPTAIILCGSFTSSPRQTSSSDQLKDGFRWLAAQLTCFRKDYEKTQF 359 (525)
T ss_pred CcCceEEEEehhccccHHHHHHHHHHHhhccCCCCeEEEEeccccccccccchHHHHHHHHHHHHhhccccccccccceE
Confidence 3445799999999987542 1 2345789999999998642 2345555556665431 1146
Q ss_pred EEEcCCCCCCCCC
Q psy12823 98 LVIAGNHELSFDP 110 (295)
Q Consensus 98 ~~V~GNHD~~~~~ 110 (295)
++|||=-|.+.+.
T Consensus 360 IFVPGP~Dp~~~~ 372 (525)
T KOG3818|consen 360 IFVPGPNDPWVDN 372 (525)
T ss_pred EEecCCCCCCcCc
Confidence 9999999998654
No 135
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=67.29 E-value=3.7 Score=39.31 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=34.2
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy12823 62 PDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELSF 108 (295)
Q Consensus 62 ~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~~ 108 (295)
.-+|.+-+.||+.|+|.... ..++.|.+.. .|=+-+||||.-+
T Consensus 189 LvVDhLHiVGDIyDRGP~pd--~Imd~L~~yh--svDiQWGNHDilW 231 (648)
T COG3855 189 LVVDHLHIVGDIYDRGPYPD--KIMDTLINYH--SVDIQWGNHDILW 231 (648)
T ss_pred HhhhheeeecccccCCCCch--HHHHHHhhcc--cccccccCcceEE
Confidence 46899999999999998766 5677777653 3668899999843
No 136
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=61.99 E-value=15 Score=32.37 Aligned_cols=63 Identities=14% Similarity=0.156 Sum_probs=39.9
Q ss_pred eEEEEEccCCCCCcc--cc------ccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy12823 42 VRVVCMSDTHSLTPH--IR------FNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELS 107 (295)
Q Consensus 42 mrI~~iSDlH~~~~~--l~------~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~ 107 (295)
|||++++|+=+.... +. ....++|+||+-|--+-.|-- -.++..+.|.+... - ++..|||=+.
T Consensus 1 mriLfiGDvvGk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~G-it~k~y~~l~~~G~-d-viT~GNH~wd 71 (266)
T COG1692 1 MRILFIGDVVGKPGRKAVKEHLPQLKSKYKIDFVIVNGENAAGGFG-ITEKIYKELLEAGA-D-VITLGNHTWD 71 (266)
T ss_pred CeEEEEecccCcchHHHHHHHhHHHHHhhcCcEEEEcCccccCCcC-CCHHHHHHHHHhCC-C-EEeccccccc
Confidence 899999999776543 11 134589999999987764431 11123344444342 2 7899999763
No 137
>KOG0377|consensus
Probab=59.83 E-value=12 Score=35.79 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=44.0
Q ss_pred CCCCCCCCC-CceEEEEEccCCCCCcccc-----ccCC-CCcEEEEcCCCCCCCCHH-HHHH-HHHHHhcCCCCcEEEEc
Q psy12823 31 QPPKTQVDP-KKVRVVCMSDTHSLTPHIR-----FNIP-DGDIFIHAGDFTRCGGEE-EVTE-FNTWIGNLPHKHKLVIA 101 (295)
Q Consensus 31 ~~~~~~~~~-~~mrI~~iSDlH~~~~~l~-----~~~~-~~D~viiaGDl~~~g~~~-e~~~-~~~~L~~l~~~pv~~V~ 101 (295)
.|+.++.++ ..-.+-+++|+|+....|- -..+ .-.--|+-||++|+|... |... ++...--.+ .-++.=.
T Consensus 153 mPnis~isTs~S~qVTiCGDLHGklDDL~~I~yKNGlPS~~npYvFNGDFVDRGk~siEvLmiL~a~~lv~P-~~~~LNR 231 (631)
T KOG0377|consen 153 MPNISRISTSVSQQVTICGDLHGKLDDLLVILYKNGLPSSSNPYVFNGDFVDRGKRSIEVLMILFALYLVYP-NAVHLNR 231 (631)
T ss_pred CCCCCccccccccceEEeccccccccceEEEEecCCCCCCCCCeeecCchhhccccchhhHHHHHHHHhcCc-hhhhccC
Confidence 444444432 2345889999999887752 1122 223467899999998632 2111 222222222 2478999
Q ss_pred CCCCCC
Q psy12823 102 GNHELS 107 (295)
Q Consensus 102 GNHD~~ 107 (295)
|||+-.
T Consensus 232 GNHED~ 237 (631)
T KOG0377|consen 232 GNHEDH 237 (631)
T ss_pred CchHHH
Confidence 999953
No 138
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=55.62 E-value=29 Score=29.69 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=21.6
Q ss_pred EEEEEccCCCCCccc----cc----cCCCCcEEEEcCCCCC
Q psy12823 43 RVVCMSDTHSLTPHI----RF----NIPDGDIFIHAGDFTR 75 (295)
Q Consensus 43 rI~~iSDlH~~~~~l----~~----~~~~~D~viiaGDl~~ 75 (295)
||++.|--+...... .. ...++|++|.+||.+.
T Consensus 1 r~a~~SC~~~~~~~~~~~~~~~~~~~~~~~d~~l~~GD~IY 41 (228)
T cd07389 1 RFAFGSCNKYESGYFNAYRALAYDHSEEDPDLFLHLGDQIY 41 (228)
T ss_pred CEEEEECCCCCCCCcHHHHHHhhhccccCCCEEEEcCCeec
Confidence 466666655554331 11 2679999999999765
No 139
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=52.39 E-value=31 Score=30.33 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=28.2
Q ss_pred cEEEEcCCCCC--------CCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy12823 65 DIFIHAGDFTR--------CGGEEEVTEFNTWIGNLPHKHKLVIAGNHELS 107 (295)
Q Consensus 65 D~viiaGDl~~--------~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~ 107 (295)
+-++++||..- .++.+++.+.++.+++++. .++++|| |++.
T Consensus 119 ~~~lftGDtl~~~g~g~~~~~~~~~~~~Sl~~l~~l~~-~~~i~pG-H~~~ 167 (248)
T TIGR03413 119 SPALFCGDTLFSAGCGRLFEGTPEQMYDSLQRLAALPD-DTLVYCA-HEYT 167 (248)
T ss_pred CCEEEEcCccccCCcCCCCCCCHHHHHHHHHHHHcCCC-CeEEECC-CCch
Confidence 45899999642 2345666666777777753 4678899 9864
No 140
>PF13941 MutL: MutL protein
Probab=45.18 E-value=40 Score=32.66 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=33.8
Q ss_pred cCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy12823 60 NIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELS 107 (295)
Q Consensus 60 ~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~ 107 (295)
...+||+|+++|= +|.|+.+-.....+.|.+....--+++.||-+..
T Consensus 121 ~~~~PDiILLaGG-tDgG~~~~il~nA~~La~~~~~~pVIyAGN~~a~ 167 (457)
T PF13941_consen 121 REIRPDIILLAGG-TDGGNKEVILHNAEMLAEANLRIPVIYAGNKAAQ 167 (457)
T ss_pred hccCCCEEEEeCC-ccCCchHHHHHHHHHHHhCCCCCcEEEECCHHHH
Confidence 3469999999997 4567766666666777766532227899999864
No 141
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=44.23 E-value=35 Score=33.01 Aligned_cols=45 Identities=24% Similarity=0.318 Sum_probs=32.9
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCC-CcEEEEcCCCCCC
Q psy12823 61 IPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPH-KHKLVIAGNHELS 107 (295)
Q Consensus 61 ~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~-~pv~~V~GNHD~~ 107 (295)
..+||+|+++|= +|.|+.+-...-.+.|.++.. .| +++.||-|..
T Consensus 118 ~~~PDIILLaGG-tDGG~~e~~l~NA~~La~~~~~~p-IIyAGN~~a~ 163 (463)
T TIGR01319 118 ESNLDIILFAGG-TDGGEEECGIHNAKMLAEHGLDCA-IIVAGNKDIQ 163 (463)
T ss_pred hcCCCEEEEeCC-cCCCchHHHHHHHHHHHhcCCCCc-EEEeCCHHHH
Confidence 359999999997 455665555666777777653 36 6889999874
No 142
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=35.84 E-value=67 Score=28.22 Aligned_cols=40 Identities=23% Similarity=0.412 Sum_probs=26.9
Q ss_pred EEEcCCCCCC--------CCHHHHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy12823 67 FIHAGDFTRC--------GGEEEVTEFNTWIGNLPHKHKLVIAGNHELSF 108 (295)
Q Consensus 67 viiaGDl~~~--------g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~~ 108 (295)
++++||..-. ++.+++...++.|.+++. .+++.|| |++..
T Consensus 122 ~lFtGDtlf~~g~gr~f~g~~~~~~~Sl~kl~~l~~-~t~i~pg-H~y~~ 169 (251)
T PRK10241 122 YLFCGDTLFSGGCGRLFEGTASQMYQSLKKINALPD-DTLICCA-HEYTL 169 (251)
T ss_pred cEEEcCeeccCCcCCCCCCCHHHHHHHHHHHHcCCC-CEEEECC-CCChh
Confidence 6889995432 345666666777777753 4677788 99763
No 143
>KOG4419|consensus
Probab=33.11 E-value=45 Score=33.16 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=40.5
Q ss_pred CCCCceEEEEEccCCCCCccc--------------------c--ccCCCCcEE-EEcCCCCCCCC-----HHHHHHHHHH
Q psy12823 37 VDPKKVRVVCMSDTHSLTPHI--------------------R--FNIPDGDIF-IHAGDFTRCGG-----EEEVTEFNTW 88 (295)
Q Consensus 37 ~~~~~mrI~~iSDlH~~~~~l--------------------~--~~~~~~D~v-iiaGDl~~~g~-----~~e~~~~~~~ 88 (295)
.....+++.+.||+|+..... + .....+|++ +-+||+-+... ..+-......
T Consensus 38 ~~~~~~nf~hTtdthG~~~~h~~~~~~~~~~G~f~~f~~~~k~~a~~~~~dvl~~dtGD~hdGtg~sd~~~~~g~~t~~l 117 (602)
T KOG4419|consen 38 LNWGQPNFIHTTDTHGWLGSHLRDARYDADFGDFAAFALRMKELADRKGVDVLLVDTGDLHDGTGLSDATDPPGIYTNFL 117 (602)
T ss_pred cccccccceeeccccccccccccchhhhhhhhhHHHHHHHHHHHHhccCCCEEEEecccccCCceeeeccCCchHHHHHH
Confidence 345668999999999965421 0 123467765 55899876321 1111122233
Q ss_pred HhcCCCCcEEEEcCCCCCCC
Q psy12823 89 IGNLPHKHKLVIAGNHELSF 108 (295)
Q Consensus 89 L~~l~~~pv~~V~GNHD~~~ 108 (295)
++-.+. =....|||+++.
T Consensus 118 ~~~~~y--D~l~lGNHEl~~ 135 (602)
T KOG4419|consen 118 FKMMPY--DILTLGNHELYQ 135 (602)
T ss_pred HhcCcc--chhhhcchhhhh
Confidence 333321 368899999973
No 144
>KOG0376|consensus
Probab=32.96 E-value=29 Score=33.55 Aligned_cols=70 Identities=23% Similarity=0.396 Sum_probs=42.6
Q ss_pred CCCceEEEEEccCCCCCccc-c-c---cCC-CCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCC-CcEEEEcCCCCCC
Q psy12823 38 DPKKVRVVCMSDTHSLTPHI-R-F---NIP-DGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPH-KHKLVIAGNHELS 107 (295)
Q Consensus 38 ~~~~mrI~~iSDlH~~~~~l-~-~---~~~-~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~-~pv~~V~GNHD~~ 107 (295)
.....++.+.+|+|+....+ + + ..+ .----+..||++++|....-..+..+.-.+.. ..+|...|||+..
T Consensus 210 ~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~ 286 (476)
T KOG0376|consen 210 VPGDVKISVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESD 286 (476)
T ss_pred cCCCceEEecCCccccccchhhhHhhcCCCCCcccccccCceeeecccceeeeeeehhhcccCCcceeeccCCccch
Confidence 56678999999999987654 1 1 111 22335679999998874321111122222222 2589999999863
No 145
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=30.05 E-value=1.3e+02 Score=22.65 Aligned_cols=45 Identities=13% Similarity=0.039 Sum_probs=32.0
Q ss_pred cCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCC-CcEEEEcCCCCC
Q psy12823 60 NIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPH-KHKLVIAGNHEL 106 (295)
Q Consensus 60 ~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~-~pv~~V~GNHD~ 106 (295)
...+||+|.++.=... ......++.+.+++... ...+++-|+|-.
T Consensus 47 ~~~~pdvV~iS~~~~~--~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~ 92 (119)
T cd02067 47 KEEDADAIGLSGLLTT--HMTLMKEVIEELKEAGLDDIPVLVGGAIVT 92 (119)
T ss_pred HHcCCCEEEEeccccc--cHHHHHHHHHHHHHcCCCCCeEEEECCCCC
Confidence 3469999999975433 34555677788887643 356899999964
No 146
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=29.04 E-value=1.2e+02 Score=26.39 Aligned_cols=44 Identities=9% Similarity=-0.009 Sum_probs=32.0
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy12823 61 IPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELS 107 (295)
Q Consensus 61 ~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~ 107 (295)
....|++++.|=. .-+.+...++++.+++.. .|++.-|||++.-
T Consensus 25 ~~gtdai~vGGS~--~vt~~~~~~~v~~ik~~~-lPvilfp~~~~~i 68 (223)
T TIGR01768 25 ESGTDAILIGGSQ--GVTYEKTDTLIEALRRYG-LPIILFPSNPTNV 68 (223)
T ss_pred hcCCCEEEEcCCC--cccHHHHHHHHHHHhccC-CCEEEeCCCcccc
Confidence 3468999999965 222345556778888755 5999999999963
No 147
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=27.57 E-value=1.3e+02 Score=26.35 Aligned_cols=44 Identities=25% Similarity=0.179 Sum_probs=31.5
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy12823 61 IPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELS 107 (295)
Q Consensus 61 ~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~ 107 (295)
....|++++.|=.. -+.+...++.+.+++. ..|++.-|||++.-
T Consensus 30 ~~gtdai~vGGS~~--vt~~~~~~~v~~ik~~-~lPvilfp~~~~~i 73 (232)
T PRK04169 30 ESGTDAIIVGGSDG--VTEENVDELVKAIKEY-DLPVILFPGNIEGI 73 (232)
T ss_pred hcCCCEEEEcCCCc--cchHHHHHHHHHHhcC-CCCEEEeCCCcccc
Confidence 34679999999652 1234555677888873 35999899999963
No 148
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=27.49 E-value=1.4e+02 Score=25.55 Aligned_cols=44 Identities=14% Similarity=0.127 Sum_probs=31.7
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy12823 62 PDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELS 107 (295)
Q Consensus 62 ~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~ 107 (295)
...|++++.|=. .-+.+...++.+.+++....|++.-|||++.-
T Consensus 23 ~gtDaI~VGGS~--gvt~~~~~~~v~~ik~~~~lPvilfp~~~~~i 66 (205)
T TIGR01769 23 AGTDAIMVGGSL--GIVESNLDQTVKKIKKITNLPVILFPGNVNGL 66 (205)
T ss_pred cCCCEEEEcCcC--CCCHHHHHHHHHHHHhhcCCCEEEECCCcccc
Confidence 457999999863 12345566677788874446999999999963
No 149
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=25.74 E-value=55 Score=28.09 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=20.6
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy12823 63 DGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNH 104 (295)
Q Consensus 63 ~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNH 104 (295)
..| |+++||++...+... ..+.++..+..++.-++-|.|
T Consensus 142 ~~D-l~LagDlfy~~~~a~--~l~~~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 142 AFD-LLLAGDLFYNHTEAD--RLIPWKDRLAEAGAAVLVGDP 180 (218)
T ss_pred cee-EEEeeceecCchHHH--HHHHHHHHHHhCCCEEEEeCC
Confidence 445 567899987655433 455555544333333334443
No 150
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=25.48 E-value=78 Score=23.96 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=22.7
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCc-EEEEcCCCCC
Q psy12823 62 PDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKH-KLVIAGNHEL 106 (295)
Q Consensus 62 ~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~p-v~~V~GNHD~ 106 (295)
.++.+|+++=++.+ +..+.++.+++.. .| ++.||++|-.
T Consensus 44 ~d~gII~Ite~~a~-----~i~~~i~~~~~~~-~P~Il~IP~~~g~ 83 (104)
T PRK01395 44 EDYGIIYITEQIAA-----DIPETIERYDNQV-LPAIILIPSNQGS 83 (104)
T ss_pred CCcEEEEEcHHHHH-----HhHHHHHHhcCCC-CCEEEEeCCCCCC
Confidence 46677777766543 2223334444323 35 6899998874
No 151
>PF00853 Runt: Runt domain; InterPro: IPR013524 The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia []. The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene []. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction. In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters. The protein is a heterodimer of alpha- and beta-subunits. The alpha-subunit binds DNA as a monomer, and appears to have a role in the development of normal hematopoiesis. CBF is a nuclear protein expressed in numerous tissue types, except brain and heart; highest levels have been found to occur in thymus, bone marrow and peripheral blood. This domain occurs towards the N terminus of the proteins in this entry.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1E50_E 1LJM_A 1CO1_A 1H9D_C 1CMO_A 1EAO_B 1HJC_D 1HJB_F 2J6W_B 1EAN_A ....
Probab=25.08 E-value=1e+02 Score=24.20 Aligned_cols=20 Identities=10% Similarity=0.355 Sum_probs=14.8
Q ss_pred eEEccCCcEEEcceEEEeec
Q psy12823 158 CTYLQDEERILYGIKFYGTP 177 (295)
Q Consensus 158 ~~~L~~~~~~i~gv~i~G~~ 177 (295)
...+.++...+++++|+|.+
T Consensus 74 tavmknqvA~FnDLRFvGRS 93 (135)
T PF00853_consen 74 TAVMKNQVARFNDLRFVGRS 93 (135)
T ss_dssp EEEEETTEEEESS-EECST-
T ss_pred hhhhhccccccccccccccc
Confidence 35677888999999999965
No 152
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=23.45 E-value=69 Score=25.24 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=34.2
Q ss_pred EEEccCCCCCc--cc-cccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcC-CCCcEEEEcCCCC
Q psy12823 45 VCMSDTHSLTP--HI-RFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNL-PHKHKLVIAGNHE 105 (295)
Q Consensus 45 ~~iSDlH~~~~--~l-~~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l-~~~pv~~V~GNHD 105 (295)
+.+=|+.+... .+ .....++|++++.=|+.+..+.++....++.+... ...|+ ++-||+-
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ilv~nK~ 117 (164)
T cd04101 54 LFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPG-VLVGNKM 117 (164)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECc
Confidence 45567654321 11 22346899999999998755444444444444433 22354 4559984
No 153
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=23.43 E-value=1.7e+02 Score=25.74 Aligned_cols=45 Identities=16% Similarity=0.066 Sum_probs=32.4
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy12823 61 IPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELS 107 (295)
Q Consensus 61 ~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD~~ 107 (295)
...-|++++.|=. .-+.+...++.+.++.....|++.-||||+.-
T Consensus 39 ~~GTDaImIGGS~--gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~i 83 (240)
T COG1646 39 EAGTDAIMIGGSD--GVTEENVDNVVEAIKERTDLPVILFPGSPSGI 83 (240)
T ss_pred HcCCCEEEECCcc--cccHHHHHHHHHHHHhhcCCCEEEecCChhcc
Confidence 4578999999954 22345566777777744445999999999963
No 154
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=23.35 E-value=31 Score=27.30 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=29.1
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCC-CcEEEEcCCCC
Q psy12823 61 IPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPH-KHKLVIAGNHE 105 (295)
Q Consensus 61 ~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~-~pv~~V~GNHD 105 (295)
..+.|++|++=|+.+..+.+.....++.+..... .+.++|-||+-
T Consensus 69 ~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~ 114 (162)
T PF00071_consen 69 YRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKS 114 (162)
T ss_dssp HTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETT
T ss_pred ccccccccccccccccccccccccccccccccccccccceeeeccc
Confidence 4689999999999885554444444444443322 23467779986
No 155
>PRK13992 minC septum formation inhibitor; Provisional
Probab=22.73 E-value=1.7e+02 Score=25.07 Aligned_cols=48 Identities=19% Similarity=0.380 Sum_probs=36.1
Q ss_pred cEEEeccccCCCCeeecCcEEEE--eCCcCCCCCCCCCCCEEEEecCCCC
Q psy12823 244 KYHVFGHVHEGYGITSDGRIIFI--NASTCDLNYLPTNPPIVFDIALPPG 291 (295)
Q Consensus 244 ~~~l~GH~H~~~~~~~~g~~~~v--n~g~~~~~~~~~~~~~~~~~~~~~~ 291 (295)
++++.|.+|.+....-.|...+. -.|.+.+|...+....|+-..|.|-
T Consensus 116 dlvIlGdVn~GAeViA~GnI~V~G~LrG~a~AGa~Gd~~A~I~a~~l~p~ 165 (205)
T PRK13992 116 DVIVFGNVHKGAEILAGGSVVIFGKAQGIVRAGLNEGEQSVIAALSLQTS 165 (205)
T ss_pred CEEEEccCCCCCEEEeCCCEEEEEEeccEEEeCCCCCCceEEEEccCCcc
Confidence 89999999999987777776665 3444455778888888887777664
No 156
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=22.32 E-value=87 Score=24.65 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=34.8
Q ss_pred EEEEccCCCCCcc--c-cccCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcC---CCCcEEEEcCCCC
Q psy12823 44 VVCMSDTHSLTPH--I-RFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNL---PHKHKLVIAGNHE 105 (295)
Q Consensus 44 I~~iSDlH~~~~~--l-~~~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l---~~~pv~~V~GNHD 105 (295)
.+.+-|+-+.... + ..-..+.|.++++=|+++..+..+.....+.+.+. ...|+ ++.||.-
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-viv~nK~ 116 (163)
T cd04176 50 VLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPI-ILVGNKV 116 (163)
T ss_pred EEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECc
Confidence 3556787663221 1 11235789999999998865544444444444432 23464 5668874
No 157
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=22.04 E-value=2e+02 Score=21.57 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=26.7
Q ss_pred cCCCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEcCCCC
Q psy12823 60 NIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHE 105 (295)
Q Consensus 60 ~~~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~~pv~~V~GNHD 105 (295)
...++.+||+++.+ +.+.++-+++-..|...|||.-+||--
T Consensus 32 k~gkaKliiiAsN~-----P~~~k~~ieyYAkLs~ipV~~y~Gt~~ 72 (100)
T COG1911 32 KLGKAKLIIIASNC-----PKELKEDIEYYAKLSDIPVYVYEGTSV 72 (100)
T ss_pred HcCCCcEEEEecCC-----CHHHHHHHHHHHHHcCCcEEEecCCce
Confidence 45689999999865 333444444444444458998888764
No 158
>PRK00513 minC septum formation inhibitor; Reviewed
Probab=21.24 E-value=1.7e+02 Score=25.14 Aligned_cols=50 Identities=16% Similarity=0.293 Sum_probs=34.1
Q ss_pred CCcEEEeccccCCCCeeecCcEEEE--eCCcCCCCCCCCCCCEEEEecCCCC
Q psy12823 242 KPKYHVFGHVHEGYGITSDGRIIFI--NASTCDLNYLPTNPPIVFDIALPPG 291 (295)
Q Consensus 242 ~~~~~l~GH~H~~~~~~~~g~~~~v--n~g~~~~~~~~~~~~~~~~~~~~~~ 291 (295)
+-++++.|.+|.+....-.|...+. -.|.+.+|+..+....|+...|.|-
T Consensus 119 ~gdviilGdVn~GAev~A~GnI~V~G~lrG~~~AG~~G~~~A~I~a~~l~~~ 170 (214)
T PRK00513 119 PGNLLIIGDVNPGGEVIAGGNIIVLGALRGIAHAGATGNKEAVIAALQLEPT 170 (214)
T ss_pred CCCEEEEecCCCCCEEEeCCCEEEEEEeccEEEECCCCCCceEEEEccCCcc
Confidence 3489999999998877666666554 3344445677777777776666553
No 159
>TIGR01222 minC septum site-determining protein MinC. The minC protein assists in correct placement of the septum for cell division by inhibiting septum formation at other sites. Homologs from Deinocoocus, Synechocystis PCC 6803, and Helicobacter pylori do not hit the full length of the model and score between the trusted and noise cutoffs.
Probab=20.85 E-value=2.1e+02 Score=24.54 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=35.3
Q ss_pred CcEEEeccccCCCCeeecCcEEEE--eCCcCCCCCCCCCCCEEEEecCCCC
Q psy12823 243 PKYHVFGHVHEGYGITSDGRIIFI--NASTCDLNYLPTNPPIVFDIALPPG 291 (295)
Q Consensus 243 ~~~~l~GH~H~~~~~~~~g~~~~v--n~g~~~~~~~~~~~~~~~~~~~~~~ 291 (295)
-|+++.|.+|.+....-.|...+. -.|.+.+|...++...|+...|.|-
T Consensus 130 gDliilG~Vn~GAeViA~GnI~V~G~LrG~a~AG~~Gd~~A~I~a~~l~ae 180 (217)
T TIGR01222 130 GDLIVLGNVNAGAEVLADGNIHVYGKLRGRALAGANGDTSAVIFALDLQAE 180 (217)
T ss_pred CCEEEECCCCCCCEEEeCCCEEEEEEeccEEEcCCCCCCCcEEEeccCCcc
Confidence 589999999998887667766555 3344445777788878877776653
No 160
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=20.20 E-value=1.7e+02 Score=25.45 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=28.9
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHHHHhcCCC-CcEEEEcCCCCCC
Q psy12823 62 PDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPH-KHKLVIAGNHELS 107 (295)
Q Consensus 62 ~~~D~viiaGDl~~~g~~~e~~~~~~~L~~l~~-~pv~~V~GNHD~~ 107 (295)
...|++++.|=..-. +......+.+++... .|++.-|||++.-
T Consensus 24 ~gtdai~vGGS~~v~---~~~~~~~~~ik~~~~~~Pvilfp~~~~~i 67 (219)
T cd02812 24 SGTDAIMVGGSDGVS---STLDNVVRLIKRIRRPVPVILFPSNPEAV 67 (219)
T ss_pred cCCCEEEECCccchh---hhHHHHHHHHHHhcCCCCEEEeCCCcccc
Confidence 568999999965221 233345555655443 5999999999963
Done!