RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12823
(295 letters)
>gnl|CDD|163622 cd07379, MPP_239FB, Homo sapiens 239FB and related proteins,
metallophosphatase domain. 239FB (Fetal brain protein
239) is thought to play a role in central nervous system
development, but its specific role in unknown. 239FB is
expressed predominantly in human fetal brain from a gene
located in the chromosome 11p13 region associated with
the mental retardation component of the WAGR (Wilms
tumor, Aniridia, Genitourinary anomalies, Mental
retardation) syndrome. Orthologous brp-like (brain
protein 239-like) proteins have been identified in the
invertebrate amphioxus group and in vertebrates. 239FB
belongs to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 135
Score = 115 bits (290), Expect = 4e-32
Identities = 39/72 (54%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 43 RVVCMSDTHSLTPHIRFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAG 102
R VC+SDTHS +IPDGD+ IHAGD T G EE+ +F W+ +LPH HK+VIAG
Sbjct: 1 RFVCISDTHSRHR--TISIPDGDVLIHAGDLTERGTLEELQKFLDWLKSLPHPHKIVIAG 58
Query: 103 NHELSFDPTFTH 114
NH+L+ DP T
Sbjct: 59 NHDLTLDPEDTD 70
Score = 104 bits (262), Expect = 6e-28
Identities = 41/71 (57%), Positives = 49/71 (69%), Gaps = 5/71 (7%)
Query: 203 PADTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGITS--- 259
P DTD+L++H PP GH DL +G R GC ELL V QRV+PK HVFGH+HEGYG
Sbjct: 66 PEDTDILVTHGPPYGHLDLVSSGQRVGCEELLNRV-QRVRPKLHVFGHIHEGYGAERVLD 124
Query: 260 -DGRIIFINAS 269
DG +F+NAS
Sbjct: 125 TDGETLFVNAS 135
>gnl|CDD|215750 pfam00149, Metallophos, Calcineurin-like phosphoesterase. This
family includes a diverse range of phosphoesterases,
including protein phosphoserine phosphatases,
nucleotidases, sphingomyelin phosphodiesterases and
2'-3' cAMP phosphodiesterases as well as nucleases such
as bacterial SbcD or yeast MRE11. The most conserved
regions in this superfamily centre around the metal
chelating residues.
Length = 185
Score = 54.8 bits (131), Expect = 4e-09
Identities = 27/220 (12%), Positives = 46/220 (20%), Gaps = 45/220 (20%)
Query: 43 RVVCMSDTH-----SLTPHIRFNI---PDGDIFIHAGDFT-RCGGEEEVTEFNTWIGNLP 93
R++ + D H + + P D+ + GD R EV +
Sbjct: 1 RILVIGDLHGGLDDLDLLLLLLELLGEPKPDLVLFLGDLVDRGPPSLEVLALLFALKLKA 60
Query: 94 HKHKLVIAGNHELSFDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRD 153
++ GNH+ + C V
Sbjct: 61 PGPVYLVRGNHDFDSGNSELGFYLECAGLPY---------------------VLGNGDVS 99
Query: 154 RLTNCTYLQDEERILYGIKFYGTPWQPEFCKWAFNVPRGEACLSKWQDIPADTDVLISHT 213
T G + + D +L+ H
Sbjct: 100 NGTVEIIGLSSLYGKGGGLVWEEFLELLDLLLLAA--------------LVDGKILLVHG 145
Query: 214 PPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHE 253
P D G L + + + GH H
Sbjct: 146 PLSPSLDSGDDIYLFGEEALE-DLLKDNGVDLVLRGHTHV 184
>gnl|CDD|225040 COG2129, COG2129, Predicted phosphoesterases, related to the Icc
protein [General function prediction only].
Length = 226
Score = 47.7 bits (114), Expect = 2e-06
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 208 VLISHTPPIGHGDLCCTGL-RAGCVELLTTVQQRVKPKYHVFGHVHEGYGITSDGRIIFI 266
+L++H PP G +G G + ++ +P + GH+HE GI G I +
Sbjct: 141 ILLTHAPPYGTLLDTPSGYVHVGSKAVRKLIE-EFQPLLGLHGHIHESRGIDKIGNTIVV 199
Query: 267 N-ASTCDLNY 275
N + Y
Sbjct: 200 NPGPLGEGRY 209
>gnl|CDD|163646 cd07403, MPP_TTHA0053, Thermus thermophilus TTHA0053 and related
proteins, metallophosphatase domain. TTHA0053 is an
uncharacterized Thermus thermophilus protein with a
domain that belongs to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 129
Score = 43.0 bits (102), Expect = 2e-05
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 12/72 (16%)
Query: 205 DTDVLISHTPPIG---HGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYG----I 257
D D+L++H PP G D G A R +PK + GH H YG I
Sbjct: 56 DVDILLTHAPPAGIGDGEDFAHRGFEA-----FLDFIDRFRPKLFIHGHTHLNYGYQLRI 110
Query: 258 TSDGRIIFINAS 269
G INA
Sbjct: 111 RRVGDTTVINAY 122
>gnl|CDD|163635 cd07392, MPP_PAE1087, Pyrobaculum aerophilum PAE1087 and related
proteins, metallophosphatase domain. PAE1087 is an
uncharacterized Pyrobaculum aerophilum protein with a
metallophosphatase domain. The domain present in
members of this family belongs to the metallophosphatase
(MPP) superfamily. MPPs are functionally diverse, but
all share a conserved domain with an active site
consisting of two metal ions (usually manganese, iron,
or zinc) coordinated with octahedral geometry by a cage
of histidine, aspartate, and asparagine residues. The
MPP superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 188
Score = 42.3 bits (100), Expect = 8e-05
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 204 ADTDVLISHTPPIGHG-DLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGITSDGR 262
A +L++H PP G D G G + + + +P + GH+HE G+ G
Sbjct: 123 AKNLILVTHAPPYGTAVDRVSGGFHVGS-KAIRKFIEERQPLLCICGHIHESRGVDKIGN 181
Query: 263 IIFINAS 269
+ +N
Sbjct: 182 TLVVNPG 188
Score = 33.8 bits (78), Expect = 0.049
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 48 SDTHSLTPHIRFNIP---DGDIFIHAGDFTRCGGEEEVTEFN 86
SD H + I + D I AGD T GG+E E N
Sbjct: 5 SDIHGDVEKLEAIILKAEEADAVIVAGDITNFGGKEAAVEIN 46
>gnl|CDD|163614 cd00838, MPP_superfamily, metallophosphatase superfamily,
metallophosphatase domain. Metallophosphatases (MPPs),
also known as metallophosphoesterases,
phosphodiesterases (PDEs), binuclear
metallophosphoesterases, and dimetal-containing
phosphoesterases (DMPs), represent a diverse superfamily
of enzymes with a conserved domain containing an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
This superfamily includes: the phosphoprotein
phosphatases (PPPs), Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 131
Score = 38.4 bits (89), Expect = 8e-04
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 207 DVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGITSD-GRIIF 265
D+L++H PP D G LL + ++ + GH H D G ++
Sbjct: 69 DILLTHGPPYDPLDELSPDEDPGSEALLE-LLEKYGVDLVLSGHTHVYERREPDGGGTLY 127
Query: 266 INA 268
IN
Sbjct: 128 INP 130
Score = 33.0 bits (75), Expect = 0.059
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 12/78 (15%)
Query: 45 VCMSDTHSLTPHIRFNI-------PDGDIFIHAGDFT-RCGGEEEVTEFNTWIGNLPHKH 96
+SD H + + D + GD EEV + L
Sbjct: 1 AVISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIP 60
Query: 97 KLVIAGNHELSFDPTFTH 114
V+ GNH++ TH
Sbjct: 61 VYVVPGNHDI----LLTH 74
>gnl|CDD|165309 PHA03008, PHA03008, hypothetical protein; Provisional.
Length = 234
Score = 32.2 bits (73), Expect = 0.21
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 207 DVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFG----HVHEGYGITSDGR 262
D+LI+ +PP D C +L + V ++KPK+H+F H I D
Sbjct: 163 DILITASPPFAILDD-----DLACGDLFSKVI-KIKPKFHIFNGLTQFSHPNIFIYKD-- 214
Query: 263 IIFINAS 269
IIFIN++
Sbjct: 215 IIFINSN 221
>gnl|CDD|197312 cd09078, nSMase, Neutral sphingomyelinases (nSMase) catalyze the
hydrolysis of sphingomyelin in biological membranes to
ceramide and phosphorylcholine. Sphingomyelinases
(SMase) are phosphodiesterases that catalyze the
hydrolysis of sphingomyelin to ceramide and
phosphorylcholine. Eukaryotic SMases have been
classified according to their pH optima and are known as
acid SMase, alkaline SMase, and neutral SMase (nSMase).
Eukaryotic proteins in this family are nSMases, and are
activated by a variety of stress-inducing agents such as
cytokines or UV radiation. Ceramides and other metabolic
derivatives, including sphingosine, are lipid "second
messenger" molecules that participate in the regulation
of stress-induced cellular responses, including cell
death, adhesion, differentiation, and proliferation.
Bacterial neutral SMases, which also belong to this
domain family, are secreted proteins that act as
membrane-damaging virulence factors. They promote
colonization of the host tissue. This family belongs to
the large EEP (exonuclease/endonuclease/phosphatase)
superfamily that contains functionally diverse enzymes
that share a common catalytic mechanism of cleaving
phosphodiester bonds.
Length = 280
Score = 32.3 bits (74), Expect = 0.25
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 58 RFNIPDGDIFIHAGDF--TRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELSFDPTF 112
NIPD + I AGDF + +E + + + + AG L++DP
Sbjct: 161 EKNIPDNEPVIIAGDFNVDKRSSRDEYDDMLEQLHDYNAPEP-ITAGETPLTWDPGT 216
>gnl|CDD|221807 pfam12850, Metallophos_2, Calcineurin-like phosphoesterase
superfamily domain. Members of this family are part of
the Calcineurin-like phosphoesterase superfamily.
Length = 146
Score = 31.4 bits (72), Expect = 0.28
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 43 RVVCMSDTHSLTPHIRF---NIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLV 99
++ +SDTH + ++ D+ IHAGD G EV + + ++P
Sbjct: 2 KIAIISDTHGNLDALEAALEDLKGVDLIIHAGDLV---GPNEVLD---LLADIPV---YA 52
Query: 100 IAGNHE 105
+ GN++
Sbjct: 53 VRGNND 58
>gnl|CDD|223695 COG0622, COG0622, Predicted phosphoesterase [General function
prediction only].
Length = 172
Score = 31.6 bits (72), Expect = 0.29
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 43 RVVCMSDTHSLTPHIR-----FNIPDGDIFIHAGDFT 74
+++ +SDTH I FN+ D IHAGD T
Sbjct: 3 KILVISDTHGPLRAIEKALKIFNLEKVDAVIHAGDST 39
>gnl|CDD|163617 cd00841, MPP_YfcE, Escherichia coli YfcE and related proteins,
metallophosphatase domain. YfcE is a
manganase-dependent metallophosphatase, found in
bacteria and archaea, that cleaves bis-p-nitrophenyl
phosphate, thymidine 5'-monophosphate-p-nitrophenyl
ester, and p-nitrophenyl phosphorylcholine, but is
unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic
phosphodiesters, and various phosphomonoesters,
including p-nitrophenyl phosphate. This family also
includes the Bacilus subtilis YsnB and Methanococcus
jannaschii MJ0936 proteins. This domain family belongs
to the metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 155
Score = 31.0 bits (71), Expect = 0.38
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 43 RVVCMSDTHSLTPHIRF---NIPDGDIFIHAGDFTR 75
++ +SDTH + D D+ IHAGD
Sbjct: 1 KIGVISDTHGSLELLEKALELFGDVDLIIHAGDVLY 36
>gnl|CDD|163647 cd07404, MPP_MS158, Microscilla MS158 and related proteins,
metallophosphatase domain. MS158 is an uncharacterized
Microscilla protein with a metallophosphatase domain.
Microscilla proteins MS152, and MS153 are also included
in this family. The domain present in members of this
family belongs to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 166
Score = 30.0 bits (68), Expect = 0.79
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 47 MSDTH-----SLTPHIRFNI-PDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVI 100
+SD H +L + F I PD DI + AGD + + + + +
Sbjct: 4 LSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGY--LTDAPRFAPLLLALKGFEPVIYV 61
Query: 101 AGNHE 105
GNHE
Sbjct: 62 PGNHE 66
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 30.8 bits (69), Expect = 0.93
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 105 ELSFDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRL 155
E SF HP SCR PS + L +E PR++L E A +RDR+
Sbjct: 241 EASFCLWLLHPEPSCR-PSMSELLQSEFINE--PRENLEEREAAMELRDRI 288
>gnl|CDD|163615 cd00839, MPP_PAPs, purple acid phosphatases of the
metallophosphatase superfamily, metallophosphatase
domain. Purple acid phosphatases (PAPs) belong to a
diverse family of binuclear metallohydrolases that have
been identified and characterized in plants, animals,
and fungi. PAPs contain a binuclear metal center and
their characteristic pink or purple color derives from a
charge-transfer transition between a tyrosine residue
and a chromophoric ferric ion within the binuclear
center. PAPs catalyze the hydrolysis of a wide range of
activated phosphoric acid mono- and di-esters and
anhydrides. PAPs are distinguished from the other
phosphatases by their insensitivity to L-(+) tartrate
inhibition and are therefore also known as tartrate
resistant acid phosphatases (TRAPs). While only a few
copies of PAP-like genes are present in mammalian and
fungal genomes, multiple copies are present in plant
genomes. PAPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 294
Score = 30.3 bits (69), Expect = 1.0
Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
Query: 47 MSDTHSLTPHIRFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNL-P---HKHKLVIAG 102
+++ + H+ + + D +H GD G + ++T++ + P + +V G
Sbjct: 17 TNNSTNTLDHLEKELGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLASYVPYMVTPG 76
Query: 103 NHELSFDPTFTHPLSSCRSPSRTMHLINEIP 133
NHE ++ +F R +
Sbjct: 77 NHEADYNFSFYKIK---AFFPRFRFPHSPSG 104
>gnl|CDD|220370 pfam09734, Tau95, RNA polymerase III transcription factor (TF)IIIC
subunit. TFIIIC1 is a multisubunit DNA binding factor
that serves as a dynamic platform for assembly of
pre-initiation complexes on class III genes. This entry
represents the tau 95 subunit which holds a key position
in TFIIIC, exerting both upstream and downstream
influence on the TFIIIC-DNA complex by rendering the
complex more stable. Once bound to tDNA-intragenic
promoter elements, TFIIIC directs the assembly of TFIIIB
on the DNA, which in turn recruits the RNA polymerase
III (pol III) and activates multiple rounds of
transcription.
Length = 303
Score = 29.3 bits (66), Expect = 2.0
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 12/55 (21%)
Query: 76 CGGEEEVTEFNTWIGNLPHKHKLVIAGNHELSFDP--TFTHPLSSCRSPSRTMHL 128
GG E ++E N P L EL F P F+HP+ S RSP+ + L
Sbjct: 21 LGGIEGISE----ALNSPKPRAL------ELRFRPEDPFSHPIQSDRSPTNNVLL 65
>gnl|CDD|163633 cd07390, MPP_AQ1575, Aquifex aeolicus AQ1575 and related proteins,
metallophosphatase domain. This family includes
bacterial and archeal proteins homologous to AQ1575, an
uncharacterized Aquifex aeolicus protein. AQ1575 may
play an accessory role in DNA repair, based on the close
proximity of its gene to Holliday junction resolvasome
genes. The domain present in members of this family
belongs to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 168
Score = 28.4 bits (64), Expect = 2.6
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 61 IPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELS 107
+ D H GDF+ G E + L + K +I GNH+ S
Sbjct: 40 VGPDDTVYHLGDFSFGGKAGTELE---LLSRL-NGRKHLIKGNHDSS 82
>gnl|CDD|224327 COG1409, Icc, Predicted phosphohydrolases [General function
prediction only].
Length = 301
Score = 28.8 bits (64), Expect = 3.0
Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 16/73 (21%)
Query: 48 SDTH-------------SLTPHIRFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPH 94
SD H +L I D+ + GD T G EE + L
Sbjct: 7 SDLHLGALGVDSEELLEALLAAI--EQLKPDLLVVTGDLTNDGEPEEYRRLKELLARLEL 64
Query: 95 K-HKLVIAGNHEL 106
+V+ GNH+
Sbjct: 65 PAPVIVVPGNHDA 77
>gnl|CDD|163643 cd07400, MPP_YydB, Bacillus subtilis YydB and related proteins,
metallophosphatase domain. YydB (BSU40220) is an
uncharacterized Bacillus subtilis protein that belongs
to the following Bacillus subtilis gene cluster
yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 144
Score = 28.1 bits (63), Expect = 3.8
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 65 DIFIHAGDFTRCGGEEEVTEFNTWIGNLPHK--HKLVIAGNH 104
D+ + GD T+ G EE E ++ LP LV+ GNH
Sbjct: 37 DLVVITGDLTQRGLPEEFEEAREFLDALPAPLEPVLVVPGNH 78
>gnl|CDD|237970 PRK15453, PRK15453, phosphoribulokinase; Provisional.
Length = 290
Score = 28.2 bits (64), Expect = 4.9
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 187 FNVPRGEACLSKWQDIPADTDVL 209
+N G + W+ +P TD+L
Sbjct: 107 YNQVPGT--FTPWEPLPEGTDLL 127
>gnl|CDD|218598 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 3
subunit 8 N-terminus. The largest of the mammalian
translation initiation factors, eIF3, consists of at
least eight subunits ranging in mass from 35 to 170 kDa.
eIF3 binds to the 40 S ribosome in an early step of
translation initiation and promotes the binding of
methionyl-tRNAi and mRNA.
Length = 593
Score = 28.2 bits (63), Expect = 5.9
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 131 EIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERI 167
I + L T A + + D L + Y +ER
Sbjct: 416 FIVSKELVPRKPTFAETSDALMDGLCSYIYKDGDERT 452
>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH,
6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase,
N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR
family members. This group contains enzymes of the
zinc-dependent alcohol dehydrogenase family, including
members (aka MDR) identified as
6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase
and N-benzyl-3-pyrrolidinol dehydrogenase.
6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase
catalyzes the conversion of
6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to
6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+.
This group displays the characteristic catalytic and
structural zinc sites of the zinc-dependent alcohol
dehydrogenases. NAD(P)(H)-dependent oxidoreductases are
the major enzymes in the interconversion of alcohols
and aldehydes, or ketones. Alcohol dehydrogenase in
the liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which have a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is
comprised of 2 structurally similar halves, each of
which contacts a mononucleotide. A GxGxxG motif after
the first mononucleotide contact half allows the close
contact of the coenzyme with the ADH backbone. The
N-terminal catalytic domain has a distant homology to
GroES. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit, a
catalytic zinc at the active site and a structural zinc
in a lobe of the catalytic domain. NAD(H)-binding
occurs in the cleft between the catalytic and
coenzyme-binding domains at the active site, and
coenzyme binding induces a conformational closing of
this cleft. Coenzyme binding typically precedes and
contributes to substrate binding. In human ADH
catalysis, the zinc ion helps coordinate the alcohol,
followed by deprotonation of a histidine, the ribose
of NAD, a serine, then the alcohol, which allows the
transfer of a hydride to NAD+, creating NADH and a
zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 338
Score = 28.0 bits (63), Expect = 6.7
Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 9/64 (14%)
Query: 31 QPPKTQVDPKKVRV----VCMSDTHSLTPHIRFNIPDGDIFIHAGDFTRCGGEEEVTEFN 86
+P +V V+V VC SD H L + H T VT F
Sbjct: 23 EPGPGEV---LVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNF- 78
Query: 87 TWIG 90
+G
Sbjct: 79 -KVG 81
>gnl|CDD|163441 TIGR03729, acc_ester, putative phosphoesterase. Members of this
protein family belong to the larger family pfam00149
(calcineurin-like phosphoesterase), a family largely
defined by small motifs of metal-chelating residues. The
subfamily in this model shows a good but imperfect
co-occurrence in species with domain TIGR03715 that
defines a novel class of signal peptide typical of the
accessory secretory system.
Length = 239
Score = 27.7 bits (62), Expect = 6.9
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 239 QRVKPKYHVFGHVHEGYGITSDGRIIFINAS 269
+ + K +FGH+H +G + G + N
Sbjct: 206 VKYEIKDVIFGHLHRRFGPLTIGGTTYHNRP 236
>gnl|CDD|215295 PLN02538, PLN02538, 2,3-bisphosphoglycerate-independent
phosphoglycerate mutase.
Length = 558
Score = 27.7 bits (62), Expect = 8.0
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 22 SQKVIKINVQPP-KTQVDPKKVRVVCMSDTHSLTPHIRFNIPDGDIFIHAGDF 73
S I NVQP K +K R +S +R N+ +GD+ H GD
Sbjct: 391 SDNGIPFNVQPKMKALEIAEKARDALLSGKFD---QVRVNLANGDMVGHTGDL 440
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.451
Gapped
Lambda K H
0.267 0.0767 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,493,392
Number of extensions: 1455726
Number of successful extensions: 1200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1185
Number of HSP's successfully gapped: 33
Length of query: 295
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 199
Effective length of database: 6,679,618
Effective search space: 1329243982
Effective search space used: 1329243982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)