RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12823
(295 letters)
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold,
metallophosphodiesterase, active site mutan nucleotide
polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB:
3rl3_A* 3rl4_A*
Length = 296
Score = 237 bits (606), Expect = 8e-78
Identities = 125/298 (41%), Positives = 166/298 (55%), Gaps = 22/298 (7%)
Query: 1 MSIPIHPLTQNPTAAWKELSGSQKVIKINVQ------PPKTQVDPKKVRVVCMSDTHSLT 54
++I + + NPT A+ + +Q + P T R VC+SDT S
Sbjct: 13 VTITVDEYSSNPTQAFTHYNINQSRFQPPHVHMVDPIPYDTPKPAGHTRFVCISDTRSR- 71
Query: 55 PHIRFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELSFDPTFTH 114
+P GDI +H GDFT G EV +FN W+GNLP+++K+VIAGNHEL+FD F
Sbjct: 72 -TDGIQMPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKIVIAGNHELTFDKEFMA 130
Query: 115 PLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYGIKFY 174
L P S + N++ LTN YLQD E + G + Y
Sbjct: 131 DLVKQDYYRF-------------PSVSKLKPEDFDNVQSLLTNSIYLQDSEVTVKGFRIY 177
Query: 175 GTPWQPEFCKWAFNVPRGEACLSKWQDIPADTDVLISHTPPIGHGDLCCTGLR-AGCVEL 233
G PW P F W FN+PRG++ L KW IP TD+L++H PP+G D L+ GCVEL
Sbjct: 178 GAPWTPWFNGWGFNLPRGQSLLDKWNLIPEGTDILMTHGPPLGFRDWVPKELQRVGCVEL 237
Query: 234 LTTVQQRVKPKYHVFGHVHEGYGITSDGRIIFINASTCDLNYLPTNPPIVFDIALPPG 291
L TVQ+RV+PK HVFG +HEGYG +DG +INASTC +++ PTNPPI+FD+ P G
Sbjct: 238 LNTVQRRVRPKLHVFGGIHEGYGTMTDGYTTYINASTCTVSFQPTNPPIIFDLPNPQG 295
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown
function, NPPSFA, national PROJ protein structural and
functional analyses; 1.60A {Aquifex aeolicus} SCOP:
d.159.1.6
Length = 260
Score = 86.0 bits (212), Expect = 7e-20
Identities = 35/244 (14%), Positives = 71/244 (29%), Gaps = 32/244 (13%)
Query: 43 RVVCMSDTHSLTPHIR-----FNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHK 97
+V+ + + + DI + G+ + E+ E P++
Sbjct: 7 KVLAIKNFKERFDLLPKLKGVIAEKQPDILVVVGNILKNEALEKEYERAHLARREPNRKV 66
Query: 98 LVIAGNHELSFDPTFTHPLSSCRSPSRTMHLINEIPTLGLP-------RDSLTEAVKARN 150
+ ++ + F + + T +P + L A +A
Sbjct: 67 IHENEHYIIETLDKFFREIGEL-----------GVKTFVVPGKNDAPLKIFLRAAYEAET 115
Query: 151 MRDRLTNCTYLQDEERILYGIKFYGTPWQP----EFCKWAFNVPRGEACLSKWQDIPADT 206
+ R + + +G E + E L ++
Sbjct: 116 AYPNIRVLHEGFAGWRGEFEVIGFGGLLTEHEFEEDFVLKYPRWYVEYILKFVNELKPRR 175
Query: 207 DVLISHTPPIGHG--DLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGITSDGRII 264
V I +TPPIG G + T + + + P+ + GHV + G G I
Sbjct: 176 LVTIFYTPPIGEFVDRTPEDPKHHGSAVVNTII-KSLNPEVAIVGHVGK--GHELVGNTI 232
Query: 265 FINA 268
+N
Sbjct: 233 VVNP 236
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.10A {Thermus
thermophilus} SCOP: d.159.1.6
Length = 228
Score = 40.1 bits (93), Expect = 3e-04
Identities = 22/232 (9%), Positives = 52/232 (22%), Gaps = 42/232 (18%)
Query: 43 RVVCMSDTHSLTPHI-----RFNIPDGDIFIHAGDFTRCGG-EEEVTEFNTWIGNLPHKH 96
++ S+ + D G+ + F +
Sbjct: 7 YILATSNPMGDLEALEKFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEAHLP- 65
Query: 97 KLVIAGNHELSFDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLT 156
+ G + P R++ + MR+
Sbjct: 66 TAYVPGPQD--------------------------APIWEYLREAANVELVHPEMRNVHE 99
Query: 157 NCTYLQDEERIL-YGIKFYGTPWQPEFCKWAFNVPRGEACLSKWQDIPADTDVLISHTPP 215
T+ + + G + E + E L ++ + + HT P
Sbjct: 100 TFTFWRGPYLVAGVGGEIADEGEPEEHEALRYPAWVAEYRLKALWELKDYPKIFLFHTMP 159
Query: 216 IGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGITSDGRIIFIN 267
G G E+ + + P + + + + G +
Sbjct: 160 YHKGL-----NEQGSHEVAHLI-KTHNPLLVLVAGKGQKHEML--GASWVVV 203
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.002
Identities = 48/314 (15%), Positives = 85/314 (27%), Gaps = 107/314 (34%)
Query: 4 PIHPLTQNPTAAWKELSGSQKVIKINVQP-PKTQVD-PKKVRVVCMSDTHSLTPHIRFNI 61
PI + P+ + + + + Q K V + L +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY--------LKLRQALLELR 148
Query: 62 PDGDIFIH----------AGDFTRCGGEEEVTEFNT-WI--GNLPHKHKLVIAGNHELS- 107
P ++ I A D + +F W+ N + + V+ +L
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC-NSPETVLEMLQKLLY 207
Query: 108 -FDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEER 166
DP +T S S I+ I + L +K++ NC L
Sbjct: 208 QIDPNWT---SRSDHSSNIKLRIHSI------QAELRRLLKSK----PYENC-LL----- 248
Query: 167 ILYGIKFYGTPWQPEFCKWAFNVPRGEACLSKWQDIPADTDVLISHTPPIGHGDLCCTGL 226
+L + + AFN+
Sbjct: 249 VLLNV------QNAKAWN-AFNL------------------------------------- 264
Query: 227 RAGCVELLTTVQQRV------KPKYHVFGHVHEGYGITSD-GRIIFINASTCDLNYLP-- 277
C LLTT ++V H+ H +T D + + + C LP
Sbjct: 265 --SCKILLTTRFKQVTDFLSAATTTHISL-DHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 278 ---TNPPIVFDIAL 288
TNP +++
Sbjct: 322 VLTTNP---RRLSI 332
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease,
structural genomics, BSGC struc funded by NIH; 2.40A
{Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB:
1s3m_A 1s3n_A 2ahd_A
Length = 190
Score = 37.0 bits (86), Expect = 0.003
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 43 RVVCMSDTHSLTPHIR-----FNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHK 97
++ MSDTH P+IR FN + + IH GDF + EF N+
Sbjct: 27 KIGIMSDTHDHLPNIRKAIEIFNDENVETVIHCGDFV---SLFVIKEFENLNANI----- 78
Query: 98 LVIAGN 103
+ GN
Sbjct: 79 IATYGN 84
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria
monocytogenes}
Length = 443
Score = 37.5 bits (86), Expect = 0.005
Identities = 27/199 (13%), Positives = 60/199 (30%), Gaps = 20/199 (10%)
Query: 65 DIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHK--LVIAGNHELSFDPTFTHPLSSCRSP 122
D+ I +GD T G + E + + V+ GNH++ +P + P
Sbjct: 94 DVLIISGDLTNNGEKTSHEELAKKLTQVEKNGTQVFVVPGNHDI-NNPWARKFEKDKQLP 152
Query: 123 SRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYGI----KFYGTPW 178
+ T+ + ++ + + +YL ++ + Y T
Sbjct: 153 TDTISPTD-------FSKIYSDFGYEDAISSDEFSLSYLAAPSSKVWLLMLDTAIYKTNM 205
Query: 179 QPEFCKWAFNVPRG-----EACLSKWQDIPADTDVLISHTPPIGHGDLCCTGLRAGCVEL 233
Q + G + + + + + H H D+ G +
Sbjct: 206 QQGNPTTEGGLTAGTLDWIKESSALAKK-NGAKLIPVLHHNLTDHNDVIQKGYTINYNQQ 264
Query: 234 LTTVQQRVKPKYHVFGHVH 252
+ + + GH+H
Sbjct: 265 VIDALTEGAMDFSLSGHIH 283
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A
{Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Length = 426
Score = 36.6 bits (84), Expect = 0.007
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 48 SDTHSLTPHIRFNIPDGDIFIHAGDFTRCGG--EEEVTEFNTWIGNLPHKHK----LVIA 101
D+++ H N G + GD + + ++TW + A
Sbjct: 139 HDSNTTLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFSERSVAYQPWIWTA 198
Query: 102 GNHELSFDP 110
GNHE+ + P
Sbjct: 199 GNHEIDYAP 207
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase,
PSI, protein structure initiative, midwest center for
structural genomics, MCSG; 2.25A {Escherichia coli}
SCOP: d.159.1.7
Length = 208
Score = 35.1 bits (81), Expect = 0.013
Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 10/72 (13%)
Query: 43 RVVCMSDTHSLTPHIR-----FNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHK 97
+++ SD H P F + GD G + E + ++
Sbjct: 27 KLMFASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNE 86
Query: 98 L-----VIAGNH 104
+ + GN
Sbjct: 87 VAHKVIAVRGNC 98
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase
COG0622); structural genomics, predicted
phosphodiesterase, PSI-2; HET: SRT; 2.30A
{Streptococcus pneumoniae} SCOP: d.159.1.7
Length = 176
Score = 35.0 bits (81), Expect = 0.014
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 40 KKVRVVCMSDTHSLTPHIR----FNIPDGDIFIHAGDFT 74
K ++ MSD+H + + + D H GD
Sbjct: 5 AKQTIIVMSDSHGDSLIVEEVRDRYVGKVDAVFHNGDSE 43
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase,
manganese, protein transport; 2.00A {Mus musculus} SCOP:
d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A
2r17_A
Length = 192
Score = 34.8 bits (80), Expect = 0.017
Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 16/74 (21%)
Query: 38 DPKKVRVVCMSDTH------SLTPHIR--FNIPDGDIFIHAGDFTRCGGEEEVTEFNTWI 89
++ V+ + D H SL + + G+ +E T
Sbjct: 7 TRDRMLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLC---TKESYDYLKTLA 63
Query: 90 GNLPHKHKLVIAGN 103
G++ ++ G+
Sbjct: 64 GDV-----HIVRGD 72
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.029
Identities = 51/330 (15%), Positives = 81/330 (24%), Gaps = 151/330 (45%)
Query: 2 SIPIHPLTQNPTAAWKELSGSQKVIKINVQPPKTQVDPKKVRVVCMSDTHSLTPHIRFNI 61
S P+ + Q L+ V+ + P ++R S T H +
Sbjct: 237 SCPLIGVIQ--------LA--HYVVTAKL----LGFTPGELR----SYLKGATGHSQ--- 275
Query: 62 PDGDI----FIHAGD----FTRCGGEEEVTEFNTWIG----------NLPHKHKLVIAGN 103
+ I D F + +IG +LP
Sbjct: 276 ---GLVTAVAIAETDSWESFFVSV--RKAITVLFFIGVRCYEAYPNTSLP-------PSI 323
Query: 104 HELSFDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQD 163
E S + P SP M I+ L ++ + + V N ++L
Sbjct: 324 LEDSLENNEGVP-----SP---MLSIS-----NLTQEQVQDYVNKTN--------SHLPA 362
Query: 164 EERI---LYGIKFYGTPWQPEFCKWAFNVPR-----GEACLSKWQDIPADTDVLISHTPP 215
+++ L N + G PP
Sbjct: 363 GKQVEISL------------------VNGAKNLVVSG---------------------PP 383
Query: 216 IGHGDLC--CTGLRAGCVELLTTVQQRV-----KPK-YHVFGHV----HEGY------GI 257
L LR Q R+ K K + F V H I
Sbjct: 384 Q---SLYGLNLTLRKAKAP-SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI 439
Query: 258 TSD--GRIIFINASTCDLNYLPTNPPIVFD 285
D + NA D+ +P V+D
Sbjct: 440 NKDLVKNNVSFNAK--DIQ-IP-----VYD 461
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue,
structural genomics, PSI- 2, protein structure
initiative; NMR {Thermotoga maritima}
Length = 178
Score = 33.0 bits (76), Expect = 0.062
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 42 VRVVCMSDTH------SLTPHIRFNIPDGDIFIHAGDFT 74
R + +SD+H SL I ++ + D I GD+
Sbjct: 23 KRFLLISDSHVPVRMASLPDEILNSLKEYDGVIGLGDYV 61
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase,
phosphatase, metal ION; 1.90A {Enterobacter aerogenes}
SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Length = 274
Score = 33.2 bits (76), Expect = 0.083
Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 6/101 (5%)
Query: 193 EACLSKWQDIPADTDVLISHTPP--IGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGH 250
EA L + D PA + H PP +G+ + G LL V++ GH
Sbjct: 140 EAQLFEGGDKPA---TIFMHHPPLPLGNAQMDPIACENG-HRLLALVERFPSLTRIFCGH 195
Query: 251 VHEGYGITSDGRIIFINASTCDLNYLPTNPPIVFDIALPPG 291
H +I T + P
Sbjct: 196 NHSLTMTQYRQALISTLPGTVHQVPYCHADTDPYYDLSPAS 236
Score = 30.9 bits (70), Expect = 0.38
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 56 HIRFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNH 104
+ D + +GD CG EE +G+L +I GNH
Sbjct: 34 QLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLN-YPLYLIPGNH 81
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold,
swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium
tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Length = 330
Score = 30.3 bits (68), Expect = 0.64
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 3/52 (5%)
Query: 56 HIRFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHK---LVIAGNH 104
+ + D + GD G + + + + + GNH
Sbjct: 59 QLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVMGNH 110
Score = 27.6 bits (61), Expect = 5.8
Identities = 9/45 (20%), Positives = 15/45 (33%)
Query: 247 VFGHVHEGYGITSDGRIIFINASTCDLNYLPTNPPIVFDIALPPG 291
+ GH+H T G + + ++TC L G
Sbjct: 216 LAGHLHYSTNATFVGIPVSVASATCYTQDLTVAAGGTRGRDGAQG 260
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich,
structural genomics, structural genomics consortium,
SGC, protein transport; 2.20A {Cryptosporidium parvum}
SCOP: d.159.1.7
Length = 215
Score = 29.8 bits (67), Expect = 0.88
Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 16/68 (23%)
Query: 44 VVCMSDTH------SLTPHIR--FNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHK 95
V+ + D L + R + + G+ +E V N+
Sbjct: 28 VLLIGDLKIPYGAKELPSNFRELLATDKINYVLCTGNVC---SQEYVEMLKNITKNV--- 81
Query: 96 HKLVIAGN 103
+++G+
Sbjct: 82 --YIVSGD 87
>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR
initiative, PSI-2, NEW YORK SGX research center for
structu genomics, nysgxrc; 1.90A {Candida albicans}
SCOP: d.114.1.1 d.159.1.2
Length = 557
Score = 29.6 bits (66), Expect = 1.4
Identities = 19/107 (17%), Positives = 30/107 (28%), Gaps = 38/107 (35%)
Query: 32 PPKTQVDPKKVRVVCMSDTHS-LTPHIRFNIPDGD----------------------IFI 68
P + + V +DTH + HI + + + I
Sbjct: 6 FPHRNLTWNDINFVHTTDTHGWYSGHINQPLYHANWGDFISFTTHMRRIAHSRNQDLLLI 65
Query: 69 HAGD---------FTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHEL 106
+GD T G + F + L+ GNHEL
Sbjct: 66 DSGDRHDGNGLSDITSPNGLKSTPIFIKQ------DYDLLTIGNHEL 106
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG,
structural genomics, center for structural genomics;
1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Length = 120
Score = 27.9 bits (63), Expect = 1.8
Identities = 5/27 (18%), Positives = 8/27 (29%)
Query: 247 VFGHVHEGYGITSDGRIIFINASTCDL 273
F G ++ D I N +
Sbjct: 8 AFHLAPIGLVLSRDRVIEDCNDELAAI 34
>1nls_A Concanavalin A; lectin, agglutinin; 0.94A {Canavalia ensiformis}
SCOP: b.29.1.1 PDB: 1bxh_A* 1apn_A 1ces_A 1cjp_A* 1c57_A
1cvn_A* 1con_A 1dq1_A 1dq2_A 1dq4_A 1dq5_A 1dq6_A 1enq_A
1enr_A 1ens_A 1gic_A* 1dq0_A 1hqw_A 1gkb_A* 1i3h_A ...
Length = 237
Score = 28.3 bits (62), Expect = 2.5
Identities = 16/142 (11%), Positives = 35/142 (24%), Gaps = 7/142 (4%)
Query: 38 DPKKVRVVCMSDTHSLTPHIRFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHK 97
++ S L+ + + D + D E + G +
Sbjct: 46 KVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNT 105
Query: 98 LVIAGNHELSFDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTN 157
+ LS+ T +S + + N+ +A + LT
Sbjct: 106 I-------LSWSFTSKLKSNSTHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTR 158
Query: 158 CTYLQDEERILYGIKFYGTPWQ 179
+ + G + P
Sbjct: 159 VSSNGSPQGSSVGRALFYAPVH 180
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory
system, PAS, kinase, membrane, transferase, solid state
cell inner membrane; NMR {Escherichia coli}
Length = 118
Score = 27.3 bits (61), Expect = 2.5
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 247 VFGHVHEG-YGITSDGRIIFINASTCDL 273
+ + EG + G + IN + +L
Sbjct: 20 MLQSIKEGVVAVDDRGEVTLINDAAQEL 47
>2im9_A Hypothetical protein; structural genomics, PSI-2, protein ST
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 1.67A {Legionella pneumophila subsp} SCOP:
d.3.1.13
Length = 333
Score = 26.8 bits (58), Expect = 8.2
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 252 HEGYGITSDGRIIFINAST 270
H G+ I + + F AS+
Sbjct: 268 HLGFAIWINNELFFRQASS 286
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase,
metalloprotein, metallophosphoesterase, protein
structure initiative; 1.70A {Danio rerio} SCOP:
d.159.1.12
Length = 322
Score = 26.8 bits (58), Expect = 8.4
Identities = 27/242 (11%), Positives = 57/242 (23%), Gaps = 39/242 (16%)
Query: 59 FNIPDGDIFIHAGDFTRCGGEEEVTEFNTW------IGNLPHKHKLVIAGNHELSFDPTF 112
+ + GD + + GNHE
Sbjct: 47 WRRERVQCVVQLGDIIDGHNRRRDASDRALDTVMAELDACSVDV-HHVWGNHEFYNFSRP 105
Query: 113 THPLSSCRSPSRTM-----------------------HLI----NEIPTLGLPRDSLTEA 145
+ S S RT + ++ +G +S +
Sbjct: 106 SLLSSRLNSAQRTGTDTGSDLIGDDIYAYEFSPAPNFRFVLLDAYDLSVIGREEES-EKH 164
Query: 146 VKARNMRDRLTNCTYLQDEERILYGIKFYGTPWQPEFCKWAFNVPRGEACLSKWQDIPAD 205
+ + + + + + G++ + F + LS +
Sbjct: 165 THSWRILTQHNHNLQDLNLPPVSVGLEQRFVKFNGGFSEQQLQWLDAVLTLSDHKQERV- 223
Query: 206 TDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGITSDGRIIF 265
++ SH P L +L+ ++ + GH H+G T
Sbjct: 224 --LIFSHLPVHPCAA-DPICLAWNHEAVLSVLRSHQSVLCFIAGHDHDGGRCTDSSGAQH 280
Query: 266 IN 267
I
Sbjct: 281 IT 282
>3av0_A DNA double-strand break repair protein MRE11; DNA repair,
calcineurin-like phosphoesterase, ABC transporte
domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus
jannaschii} PDB: 3auz_A*
Length = 386
Score = 26.7 bits (59), Expect = 8.7
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 65 DIFIHAGDF--TRCGGEEEVTEFNTWIGNLPHKHK--LVIAGNHELSFDPTFTHPL 116
D+ +H+GD + + L + ++AGNHE+ PL
Sbjct: 62 DVVLHSGDLFNDLRPPVKALRIAMQAFKKLHENNIKVYIVAGNHEMPRRLGEESPL 117
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG;
2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB:
2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*
Length = 424
Score = 27.0 bits (59), Expect = 8.8
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 49 DTHSLTPHIRFNIPDGDIFIHAGDFTRCGG--EEEVTEFNTWIGNLPHKHK----LVIAG 102
D+++ H + G + GD + + ++TW + AG
Sbjct: 133 DSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAG 192
Query: 103 NHELSFDP 110
NHE+ F P
Sbjct: 193 NHEIEFAP 200
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases, csgid,
niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 26.8 bits (60), Expect = 9.2
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 6/49 (12%)
Query: 58 RFNIPDGDIFIHAGD---FTRCGGEEEVTEFNTWIGNLPHKHK-LVIAG 102
R P G I A D F + + + L ++ ++I G
Sbjct: 196 RPIRPQGTTIIEADDEVFFV--AASNHIRSVMSELQRLEKPYRRIMIVG 242
>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure,
transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus}
SCOP: d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A*
1vqv_A
Length = 342
Score = 26.8 bits (60), Expect = 9.3
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 232 ELLTTVQQRVKPK---YHVFGHVHEGYGITSDGRII 264
+LL T + G V EG G+ DG+ +
Sbjct: 299 QLLFTHPKERWNPFLDMTEIGRVEEGEGVFVDGKKV 334
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins,
DNA breaks, DOUB stranded, DNA repair, DNA repair
enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB:
3qg5_C
Length = 379
Score = 26.6 bits (59), Expect = 10.0
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 65 DIFIHAGDF--TRCG-GEEEVTEFNTWIGNLPHKHK-LVIAGNH 104
D+ + GD +R + + ++ + +V+ GN
Sbjct: 45 DLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPGNQ 88
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.451
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,841,317
Number of extensions: 289642
Number of successful extensions: 708
Number of sequences better than 10.0: 1
Number of HSP's gapped: 693
Number of HSP's successfully gapped: 33
Length of query: 295
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 202
Effective length of database: 4,105,140
Effective search space: 829238280
Effective search space used: 829238280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)