RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12823
(295 letters)
>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956
{Aquifex aeolicus [TaxId: 63363]}
Length = 257
Score = 55.1 bits (131), Expect = 2e-09
Identities = 31/230 (13%), Positives = 71/230 (30%), Gaps = 8/230 (3%)
Query: 42 VRVVCMSDTHSLTPHIRFNIP-----DGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKH 96
+V+ + + + DI + G+ + E+ E P++
Sbjct: 3 RKVLAIKNFKERFDLLPKLKGVIAEKQPDILVVVGNILKNEALEKEYERAHLARREPNRK 62
Query: 97 KLVIAGNHELSFDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLT 156
+ ++ + F + + + N+ P R + N+R
Sbjct: 63 VIHENEHYIIETLDKFFREIGELGVKTFVVPGKNDAPLKIFLRAAYEAETAYPNIRVLHE 122
Query: 157 NCTYLQDEERILYGIKFYGTPWQPEFCKWAFNVPRGEACLSKWQDIPADTDVLISHTPPI 216
+ E ++ E + E L ++ V I +TPPI
Sbjct: 123 GFAGWRGEFEVIGFGGLLTEHEFEEDFVLKYPRWYVEYILKFVNELKPRRLVTIFYTPPI 182
Query: 217 GHG--DLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGITSDGRII 264
G G + T + + + P+ + GHV +G+ + + ++
Sbjct: 183 GEFVDRTPEDPKHHGSAVVNTII-KSLNPEVAIVGHVGKGHELVGNTIVV 231
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus
thermophilus [TaxId: 274]}
Length = 228
Score = 51.3 bits (121), Expect = 3e-08
Identities = 19/228 (8%), Positives = 47/228 (20%), Gaps = 36/228 (15%)
Query: 43 RVVCMSDTHSLTPHIR-----FNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHK 97
++ S+ + D G+ + I + H
Sbjct: 7 YILATSNPMGDLEALEKFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEAHLPT 66
Query: 98 LVIAGNHELSFDPTFTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTN 157
+ G + P R++ + MR+
Sbjct: 67 AYVPGPQ--------------------------DAPIWEYLREAANVELVHPEMRNVHET 100
Query: 158 CTYLQDEERILYGIKFYGTPWQPEFCKWAFNVPRGEACLSKWQDIPADTDVLISHTPPIG 217
T+ + + +PE + K D +
Sbjct: 101 FTFWRGPYLVAGVGGEIADEGEPEEHEALRYPAWVAEYRLKALWELKDYPKIFLF----- 155
Query: 218 HGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGITSDGRIIF 265
H GL + + + P + + + + ++
Sbjct: 156 HTMPYHKGLNEQGSHEVAHLIKTHNPLLVLVAGKGQKHEMLGASWVVV 203
>d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide
phosphodiesterase {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 256
Score = 34.8 bits (78), Expect = 0.009
Identities = 32/231 (13%), Positives = 56/231 (24%), Gaps = 7/231 (3%)
Query: 65 DIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHK----LVIAGNHELSFDPTFTHPLSSCR 120
D + GD G + + L +V G+ +P L R
Sbjct: 12 DTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKL---R 68
Query: 121 SPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYGIKFYGTPWQP 180
+ + + A + + D + L I P
Sbjct: 69 GLVEPFAAQLGAELVWVMGNHDDRAELRKFLLDEAPSMAPLDRVCMIDGLRIIVLDTSVP 128
Query: 181 EFCKWAFNVPRGEACLSKWQDIPADTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQR 240
+ + D +L H PPI + L V +
Sbjct: 129 GHHHGEIRASQLGWLAEELATPAPDGTILALHHPPIPSVLDMAVTVELRDQAALGRVLRG 188
Query: 241 VKPKYHVFGHVHEGYGITSDGRIIFINASTCDLNYLPTNPPIVFDIALPPG 291
+ + GH+H T G + + ++TC L G
Sbjct: 189 TDVRAILAGHLHYSTNATFVGIPVSVASATCYTQDLTVAAGGTRGRDGAQG 239
>d3ck2a1 d.159.1.7 (A:1-173) Uncharacterized protein SP1879
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 173
Score = 33.2 bits (75), Expect = 0.021
Identities = 14/100 (14%), Positives = 25/100 (25%), Gaps = 7/100 (7%)
Query: 40 KKVRVVCMSDTHS----LTPHIRFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHK 95
K ++ MSD+H + + D H GD GN+
Sbjct: 2 AKQTIIVMSDSHGDSLIVEEVRDRYVGKVDAVFHNGDSELRPDSPLWEGIRVVKGNMDFY 61
Query: 96 HKL---VIAGNHELSFDPTFTHPLSSCRSPSRTMHLINEI 132
++ T H + + + E
Sbjct: 62 AGYPERLVTELGSTKIIQTHGHLFDINFNFQKLDYWAQEE 101
>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ
{Enterobacter aerogenes [TaxId: 548]}
Length = 271
Score = 32.0 bits (71), Expect = 0.060
Identities = 31/239 (12%), Positives = 54/239 (22%), Gaps = 35/239 (14%)
Query: 56 HIRFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELSFDPTFTHP 115
+ D + +GD CG EE +G+L + +I GNH+
Sbjct: 34 QLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPL-YLIPGNHD---------- 82
Query: 116 LSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKARNMRDRLTNCTYLQDEERILYGIKFYG 175
L + L C R+ +
Sbjct: 83 ------------------DKALFLEYLQPLCPQLGSDANNMRCAVDDFATRL-----LFI 119
Query: 176 TPWQPEFCKWAFNVPRGEACLSKWQDIPADTDVLISHTPPIGHGDLCCTGLRA-GCVELL 234
+ K ++ + + H PP+ G+ + LL
Sbjct: 120 DSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLL 179
Query: 235 TTVQQRVKPKYHVFGHVHEGYGITSDGRIIFINASTCDLNYLPTNPPIVFDIALPPGVT 293
V++ GH H +I T + P
Sbjct: 180 ALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHADTDPYYDLSPASCL 238
>d2qfra2 d.159.1.1 (A:121-432) Plant purple acid phosphatase,
catalytic domain {Kidney bean (Phaseolus vulgaris)
[TaxId: 3885]}
Length = 312
Score = 31.8 bits (71), Expect = 0.096
Identities = 24/179 (13%), Positives = 49/179 (27%), Gaps = 22/179 (12%)
Query: 49 DTHSLTPHIRFNIPDGDIFIHAGDFTRCGGEEEVT-----EFNTWIGNLPHKHKLVIA-G 102
D+++ H + G + GD + + + + G
Sbjct: 21 DSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAG 80
Query: 103 NHELSFDPT-------------FTHPLSSCRSPSRTMHLINEIPTLGLPRDSLTEAVKAR 149
NHE+ F P + P + +S S + I + S + +
Sbjct: 81 NHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGT 140
Query: 150 NMRDRLTNCTYLQDEERILYGIKFYGTPWQPEFCKWAFNVPRGEACLSKWQDIPADTDV 208
L + I +P + + + GEA +K++ V
Sbjct: 141 PQYTWLKKELRKVKRSETPWLIVLMHSPL---YNSYNHHFMEGEAMRTKFEAWFVKYKV 196
>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936
{Methanococcus jannaschii [TaxId: 2190]}
Length = 165
Score = 31.0 bits (69), Expect = 0.10
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 43 RVVCMSDTHSLTPHI-----RFNIPDGDIFIHAGDFTRCGGEEEVTEFNTWI 89
++ MSDTH P+I FN + + IH GDF +E N I
Sbjct: 2 KIGIMSDTHDHLPNIRKAIEIFNDENVETVIHCGDFVSLFVIKEFENLNANI 53
>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}
Length = 166
Score = 30.7 bits (69), Expect = 0.11
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 198 KWQDIPADTDVLISHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGI 257
KW + DV+ T + + AG +++ T + V G + Y
Sbjct: 83 KWDE--VGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKY-- 138
Query: 258 TSDGRIIFINASTCDLNYL 276
G+ I NAS + Y
Sbjct: 139 --AGQDIVSNAS-NETGYS 154
>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog
zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]}
Length = 320
Score = 30.9 bits (68), Expect = 0.18
Identities = 25/241 (10%), Positives = 50/241 (20%), Gaps = 29/241 (12%)
Query: 59 FNIPDGDIFIHAGDFT------RCGGEEEVTEFNTWIGNLPHK-------HKLVIAGNHE 105
+ + GD R + + + H+
Sbjct: 45 WRRERVQCVVQLGDIIDGHNRRRDASDRALDTVMAELDACSVDVHHVWGNHEFYNFSRPS 104
Query: 106 LSFDPTFTHPLSSCRSPSRTMHLINEIPT---------LGLPRDSLTEAVKARNMRDRLT 156
L + + + S + + L L+ +
Sbjct: 105 LLSSRLNSAQRTGTDTGSDLIGDDIYAYEFSPAPNFRFVLLDAYDLSVIGREEESEKHTH 164
Query: 157 NCTYLQDEERILYGIKFYGTPWQPEFCKWAFNVPRGEACLSKWQDI------PADTDVLI 210
+ L L + E FN E L + + ++
Sbjct: 165 SWRILTQHNHNLQDLNLPPVSVGLEQRFVKFNGGFSEQQLQWLDAVLTLSDHKQERVLIF 224
Query: 211 SHTPPIGHGDLCCTGLRAGCVELLTTVQQRVKPKYHVFGHVHEGYGITSDGRIIFINAST 270
SH P +L+ ++ + GH H+G T I
Sbjct: 225 SHLPVHPCAADPICLAW-NHEAVLSVLRSHQSVLCFIAGHDHDGGRCTDSSGAQHITLEG 283
Query: 271 C 271
Sbjct: 284 V 284
>d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex
aeolicus [TaxId: 63363]}
Length = 188
Score = 29.4 bits (65), Expect = 0.32
Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 5/78 (6%)
Query: 56 HIRFNIPDGDIFIHAGDFT-RCGGEEEVTEFNTWIGNLPHKHKLVIAGNHELSFDPTFTH 114
++ + D H GDFT + E LP + LV+ GNH+ + +
Sbjct: 36 NLLKVLKPEDTLYHLGDFTWHFNDKNEYLR---IWKALPGRKILVM-GNHDKDKESLKEY 91
Query: 115 PLSSCRSPSRTMHLINEI 132
H I
Sbjct: 92 FDEIYDFYKIIEHKGKRI 109
>d2dkla1 a.5.2.1 (A:8-79) Trinucleotide repeat containing 6c
protein, TNRC6C {Human (Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 25.7 bits (56), Expect = 1.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 128 LINEIPTLGLPRDSLTEAVKARNM 151
LI ++ +G PR+ EA+K+ NM
Sbjct: 17 LIKQLTDMGFPREPAEEALKSNNM 40
>d2im9a1 d.3.1.13 (A:49-352) Hypothetical protein Lpg0564
{Legionella pneumophila [TaxId: 446]}
Length = 305
Score = 26.9 bits (59), Expect = 2.6
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 252 HEGYGITSDGRIIFINAS 269
H G+ I + + F AS
Sbjct: 243 HLGFAIWINNELFFRQAS 260
>d2a22a1 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, VPS29
{Cryptosporidium parvum [TaxId: 5807]}
Length = 193
Score = 26.2 bits (57), Expect = 3.7
Identities = 5/41 (12%), Positives = 12/41 (29%), Gaps = 12/41 (29%)
Query: 44 VVCMSDTHSLTPHIRFNIPDG----------DIFIHAGDFT 74
V+ + D P+ +P + + G+
Sbjct: 6 VLLIGDLKI--PYGAKELPSNFRELLATDKINYVLCTGNVC 44
>d1boba_ d.108.1.1 (A:) Histone acetyltransferase HAT1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 315
Score = 26.0 bits (57), Expect = 5.5
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 97 KLVIAGNHELSFDPTFTHPL 116
++ I G + + F P FT+P+
Sbjct: 15 RVSIVGENAVQFSPLFTYPI 34
>d3c9ua2 d.139.1.1 (A:138-300) Thiamine monophosphate kinase (ThiL)
C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Length = 163
Score = 25.3 bits (54), Expect = 7.6
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 232 ELLTTVQQRVKP---KYHVFGHVHEGYGITSDGRII 264
+LL T + G V EG G+ DG+ +
Sbjct: 126 QLLFTHPKERWNPFLDMTEIGRVEEGEGVFVDGKKV 161
>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
{Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
Length = 367
Score = 25.4 bits (55), Expect = 9.6
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 91 NLPHKHKLVIAGNHELSFDPTF 112
L H +V+ NH+ DP
Sbjct: 125 KLQQGHNVVLISNHQTEADPAI 146
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.451
Gapped
Lambda K H
0.267 0.0399 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,220,065
Number of extensions: 58841
Number of successful extensions: 179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 25
Length of query: 295
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,240,546
Effective search space: 260514660
Effective search space used: 260514660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.7 bits)