Query psy12825
Match_columns 488
No_of_seqs 302 out of 1843
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 20:47:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12825.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12825hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1495|consensus 100.0 2.4E-72 5.3E-77 541.8 32.0 327 114-487 4-330 (332)
2 cd05293 LDH_1 A subgroup of L- 100.0 3.9E-67 8.5E-72 533.3 34.6 310 176-485 2-311 (312)
3 COG0039 Mdh Malate/lactate deh 100.0 3.1E-67 6.6E-72 528.0 31.7 305 178-487 1-307 (313)
4 cd05290 LDH_3 A subgroup of L- 100.0 2.9E-66 6.4E-71 525.6 32.5 302 179-484 1-306 (307)
5 PLN02602 lactate dehydrogenase 100.0 1.2E-65 2.6E-70 528.6 34.2 310 178-487 38-348 (350)
6 PRK00066 ldh L-lactate dehydro 100.0 3.4E-64 7.4E-69 512.7 33.8 309 176-487 5-313 (315)
7 TIGR01771 L-LDH-NAD L-lactate 100.0 1.1E-63 2.3E-68 505.5 30.3 298 182-482 1-299 (299)
8 cd05291 HicDH_like L-2-hydroxy 100.0 1.2E-62 2.7E-67 499.7 33.7 305 178-485 1-305 (306)
9 TIGR01759 MalateDH-SF1 malate 100.0 9E-63 1.9E-67 502.9 31.6 304 176-486 2-322 (323)
10 cd00300 LDH_like L-lactate deh 100.0 2.4E-62 5.1E-67 496.4 33.2 299 180-484 1-299 (300)
11 PTZ00117 malate dehydrogenase; 100.0 9.2E-62 2E-66 495.9 34.7 309 175-487 3-314 (319)
12 PRK05442 malate dehydrogenase; 100.0 2.9E-62 6.3E-67 499.7 30.6 303 176-487 3-322 (326)
13 TIGR01757 Malate-DH_plant mala 100.0 6.6E-62 1.4E-66 504.5 32.3 308 173-486 40-363 (387)
14 PLN00112 malate dehydrogenase 100.0 7.3E-62 1.6E-66 511.0 32.2 307 173-485 96-418 (444)
15 PTZ00082 L-lactate dehydrogena 100.0 4.5E-61 9.8E-66 490.8 34.7 309 175-487 4-320 (321)
16 cd05292 LDH_2 A subgroup of L- 100.0 3.1E-61 6.7E-66 489.9 33.2 308 178-487 1-308 (308)
17 TIGR01763 MalateDH_bact malate 100.0 8.3E-61 1.8E-65 485.9 33.2 301 178-487 2-305 (305)
18 cd00704 MDH Malate dehydrogena 100.0 1E-60 2.2E-65 488.2 29.6 306 178-488 1-323 (323)
19 cd01338 MDH_choloroplast_like 100.0 4.5E-60 9.8E-65 483.3 30.2 303 176-487 1-320 (322)
20 PRK06223 malate dehydrogenase; 100.0 6E-59 1.3E-63 472.3 34.3 303 177-488 2-307 (307)
21 cd05294 LDH-like_MDH_nadp A la 100.0 9.3E-59 2E-63 471.8 31.9 303 178-486 1-308 (309)
22 cd01339 LDH-like_MDH L-lactate 100.0 2.4E-58 5.2E-63 466.9 33.3 296 180-484 1-299 (300)
23 cd05295 MDH_like Malate dehydr 100.0 2.6E-58 5.6E-63 484.0 33.3 344 132-487 68-450 (452)
24 TIGR01758 MDH_euk_cyt malate d 100.0 1.7E-58 3.7E-63 472.0 28.9 304 179-488 1-323 (324)
25 TIGR01772 MDH_euk_gproteo mala 100.0 4.8E-58 1E-62 465.8 30.1 287 179-485 1-304 (312)
26 cd01337 MDH_glyoxysomal_mitoch 100.0 8E-58 1.7E-62 463.6 30.9 287 178-485 1-304 (310)
27 PLN00135 malate dehydrogenase 100.0 2.7E-57 5.8E-62 459.6 28.9 278 204-487 15-304 (309)
28 cd01336 MDH_cytoplasmic_cytoso 100.0 1.1E-56 2.4E-61 459.3 29.6 306 176-488 1-325 (325)
29 PTZ00325 malate dehydrogenase; 100.0 3.3E-55 7.1E-60 446.5 31.5 291 173-485 4-311 (321)
30 TIGR01756 LDH_protist lactate 100.0 5.9E-55 1.3E-59 443.4 29.8 277 204-487 17-308 (313)
31 PLN00106 malate dehydrogenase 100.0 5.7E-54 1.2E-58 437.7 30.2 290 175-485 16-322 (323)
32 PRK05086 malate dehydrogenase; 100.0 7.1E-53 1.5E-57 429.0 30.7 287 178-485 1-304 (312)
33 cd00650 LDH_MDH_like NAD-depen 100.0 1.5E-52 3.2E-57 417.0 29.0 258 180-484 1-262 (263)
34 KOG1494|consensus 100.0 7.1E-45 1.5E-49 353.0 21.8 291 173-484 24-332 (345)
35 KOG1496|consensus 100.0 1.4E-43 3E-48 337.4 21.3 301 176-486 3-325 (332)
36 PRK15076 alpha-galactosidase; 100.0 7E-36 1.5E-40 316.2 28.7 291 177-477 1-375 (431)
37 cd05197 GH4_glycoside_hydrolas 100.0 3E-35 6.4E-40 310.5 28.5 287 178-476 1-380 (425)
38 cd05296 GH4_P_beta_glucosidase 100.0 1.3E-34 2.9E-39 305.1 28.3 289 178-477 1-370 (419)
39 PF02866 Ldh_1_C: lactate/mala 100.0 1.3E-34 2.9E-39 271.4 15.6 167 320-487 1-170 (174)
40 cd05298 GH4_GlvA_pagL_like Gly 100.0 5.6E-33 1.2E-37 293.8 29.2 290 178-477 1-384 (437)
41 cd05297 GH4_alpha_glucosidase_ 100.0 1.1E-31 2.5E-36 284.0 28.3 291 178-477 1-378 (423)
42 COG1486 CelF Alpha-galactosida 100.0 2.2E-31 4.7E-36 277.0 25.0 295 175-478 1-388 (442)
43 PF00056 Ldh_1_N: lactate/mala 100.0 8.4E-31 1.8E-35 237.9 13.9 140 178-317 1-141 (141)
44 PF02056 Glyco_hydro_4: Family 99.9 1.3E-20 2.9E-25 177.3 17.1 153 179-337 1-183 (183)
45 PF02737 3HCDH_N: 3-hydroxyacy 99.3 6.9E-12 1.5E-16 118.5 10.6 122 179-318 1-135 (180)
46 COG1250 FadB 3-hydroxyacyl-CoA 99.3 2.4E-11 5.2E-16 123.3 12.6 145 176-339 2-178 (307)
47 PRK07819 3-hydroxybutyryl-CoA 99.2 1.9E-10 4.2E-15 116.3 11.8 145 177-339 5-182 (286)
48 PRK11730 fadB multifunctional 99.2 2.2E-10 4.8E-15 129.2 13.4 145 177-340 313-489 (715)
49 PRK07066 3-hydroxybutyryl-CoA 99.2 3.6E-10 7.8E-15 116.0 13.7 146 176-339 6-179 (321)
50 TIGR02437 FadB fatty oxidation 99.1 2.8E-10 6E-15 128.3 12.8 146 176-340 312-489 (714)
51 TIGR02441 fa_ox_alpha_mit fatt 99.1 3E-10 6.6E-15 128.4 12.0 145 176-339 334-510 (737)
52 TIGR02440 FadJ fatty oxidation 99.1 5.6E-10 1.2E-14 125.7 13.2 146 176-340 303-481 (699)
53 PRK11154 fadJ multifunctional 99.1 7E-10 1.5E-14 125.1 13.5 146 176-340 308-486 (708)
54 PRK05808 3-hydroxybutyryl-CoA 99.0 4.4E-09 9.5E-14 105.8 13.0 124 176-317 2-138 (282)
55 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.0 3.1E-09 6.8E-14 115.4 11.2 145 176-339 4-180 (503)
56 PRK08293 3-hydroxybutyryl-CoA 99.0 7.5E-09 1.6E-13 104.5 13.1 125 176-318 2-141 (287)
57 PRK08268 3-hydroxy-acyl-CoA de 98.9 4.8E-09 1E-13 114.1 10.9 146 176-339 6-182 (507)
58 PRK07530 3-hydroxybutyryl-CoA 98.9 1.4E-08 3.1E-13 102.6 13.2 108 175-299 2-122 (292)
59 PRK06035 3-hydroxyacyl-CoA deh 98.9 1.3E-08 2.9E-13 102.9 12.6 108 176-300 2-125 (291)
60 COG1004 Ugd Predicted UDP-gluc 98.9 1.9E-08 4E-13 104.3 13.1 118 178-303 1-130 (414)
61 PLN02545 3-hydroxybutyryl-CoA 98.8 3.6E-08 7.7E-13 99.9 13.4 107 176-299 3-122 (295)
62 KOG2304|consensus 98.8 5.5E-09 1.2E-13 100.4 5.3 149 174-339 8-192 (298)
63 PRK09260 3-hydroxybutyryl-CoA 98.7 7.5E-08 1.6E-12 97.3 10.7 104 178-298 2-119 (288)
64 PRK06130 3-hydroxybutyryl-CoA 98.6 2.5E-07 5.5E-12 94.3 11.6 124 177-318 4-136 (311)
65 PRK07531 bifunctional 3-hydrox 98.5 6.9E-07 1.5E-11 97.1 12.3 111 177-304 4-124 (495)
66 PF03721 UDPG_MGDP_dh_N: UDP-g 98.5 5.9E-07 1.3E-11 85.4 9.7 148 178-335 1-164 (185)
67 PRK06129 3-hydroxyacyl-CoA deh 98.5 8.6E-07 1.9E-11 90.5 10.9 106 177-299 2-121 (308)
68 TIGR01915 npdG NADPH-dependent 98.4 6.4E-06 1.4E-10 80.0 15.2 104 178-299 1-106 (219)
69 PF01210 NAD_Gly3P_dh_N: NAD-d 98.4 8.4E-07 1.8E-11 81.9 8.0 114 179-310 1-124 (157)
70 PF11975 Glyco_hydro_4C: Famil 98.4 4.3E-06 9.3E-11 82.1 12.3 72 403-479 134-206 (232)
71 PLN02353 probable UDP-glucose 98.3 3.4E-06 7.3E-11 91.1 10.1 122 177-300 1-134 (473)
72 COG0240 GpsA Glycerol-3-phosph 98.2 1.7E-05 3.6E-10 81.3 12.8 115 177-309 1-125 (329)
73 PF03807 F420_oxidored: NADP o 98.1 7.3E-06 1.6E-10 68.7 6.3 94 179-296 1-96 (96)
74 PRK15057 UDP-glucose 6-dehydro 98.0 4.7E-05 1E-09 80.5 12.8 118 178-303 1-127 (388)
75 PRK08269 3-hydroxybutyryl-CoA 98.0 5E-05 1.1E-09 78.0 11.6 134 188-339 1-175 (314)
76 PRK12439 NAD(P)H-dependent gly 98.0 9.8E-05 2.1E-09 76.6 13.6 114 175-307 5-129 (341)
77 PRK06522 2-dehydropantoate 2-r 98.0 4.8E-05 1E-09 76.7 11.1 107 178-302 1-108 (304)
78 PF03446 NAD_binding_2: NAD bi 98.0 3.4E-05 7.3E-10 71.5 8.8 64 177-253 1-65 (163)
79 PRK00094 gpsA NAD(P)H-dependen 97.9 7.6E-05 1.6E-09 76.1 11.6 104 177-298 1-109 (325)
80 PRK14620 NAD(P)H-dependent gly 97.9 7.3E-05 1.6E-09 76.8 11.1 103 178-298 1-110 (326)
81 TIGR03376 glycerol3P_DH glycer 97.9 0.00013 2.8E-09 75.8 12.5 115 179-309 1-138 (342)
82 COG2085 Predicted dinucleotide 97.9 0.00015 3.3E-09 69.8 11.9 95 177-297 1-96 (211)
83 PRK14618 NAD(P)H-dependent gly 97.9 9E-05 1.9E-09 76.2 11.1 100 177-297 4-107 (328)
84 PLN00112 malate dehydrogenase 97.9 1.9E-05 4.1E-10 84.5 6.1 42 131-172 101-153 (444)
85 PRK08229 2-dehydropantoate 2-r 97.9 0.00012 2.7E-09 75.3 11.8 105 177-300 2-113 (341)
86 TIGR03026 NDP-sugDHase nucleot 97.8 0.00011 2.3E-09 78.2 11.2 109 178-294 1-120 (411)
87 cd05290 LDH_3 A subgroup of L- 97.8 1E-05 2.3E-10 82.8 3.3 41 132-172 1-44 (307)
88 PRK11064 wecC UDP-N-acetyl-D-m 97.8 0.00018 3.9E-09 76.7 12.6 114 175-299 1-125 (415)
89 PTZ00345 glycerol-3-phosphate 97.8 0.00016 3.4E-09 75.9 11.0 118 176-309 10-151 (365)
90 PRK15182 Vi polysaccharide bio 97.8 0.00028 6.1E-09 75.5 13.0 114 176-298 5-125 (425)
91 cd05293 LDH_1 A subgroup of L- 97.8 1.5E-05 3.2E-10 81.8 2.9 44 129-172 2-48 (312)
92 COG0677 WecC UDP-N-acetyl-D-ma 97.7 0.00035 7.6E-09 72.9 12.8 132 178-318 10-157 (436)
93 PLN02602 lactate dehydrogenase 97.7 1.8E-05 3.9E-10 82.5 3.2 42 131-172 38-82 (350)
94 PRK12921 2-dehydropantoate 2-r 97.7 0.00018 4E-09 72.7 10.5 117 178-316 1-121 (305)
95 PRK07417 arogenate dehydrogena 97.6 0.00046 1E-08 69.5 11.4 65 178-253 1-65 (279)
96 PRK07680 late competence prote 97.6 0.00056 1.2E-08 68.6 10.9 96 178-298 1-100 (273)
97 PRK00066 ldh L-lactate dehydro 97.6 4.4E-05 9.6E-10 78.5 3.0 42 131-172 7-51 (315)
98 PRK07502 cyclohexadienyl dehyd 97.5 0.0012 2.6E-08 67.3 13.2 70 175-253 4-74 (307)
99 COG0039 Mdh Malate/lactate deh 97.5 8.3E-05 1.8E-09 76.0 4.2 42 131-172 1-45 (313)
100 PRK11880 pyrroline-5-carboxyla 97.5 0.00054 1.2E-08 68.1 10.0 95 177-298 2-98 (267)
101 PRK14619 NAD(P)H-dependent gly 97.5 0.00043 9.3E-09 70.7 9.1 79 176-296 3-84 (308)
102 PF00056 Ldh_1_N: lactate/mala 97.5 1.9E-05 4.2E-10 71.7 -0.7 41 131-171 1-45 (141)
103 TIGR01772 MDH_euk_gproteo mala 97.5 0.00013 2.8E-09 74.9 5.2 41 132-172 1-43 (312)
104 PRK06249 2-dehydropantoate 2-r 97.5 0.00067 1.5E-08 69.4 10.4 120 175-317 3-126 (313)
105 KOG1683|consensus 97.5 0.00031 6.6E-09 72.5 7.5 113 188-318 1-126 (380)
106 cd01337 MDH_glyoxysomal_mitoch 97.4 8.8E-05 1.9E-09 76.1 3.5 41 132-172 2-44 (310)
107 PTZ00142 6-phosphogluconate de 97.4 0.00075 1.6E-08 73.1 10.1 97 178-296 2-103 (470)
108 PRK08507 prephenate dehydrogen 97.4 0.0012 2.6E-08 66.3 10.8 66 178-253 1-66 (275)
109 PRK07634 pyrroline-5-carboxyla 97.4 0.0014 3.1E-08 64.2 11.0 69 175-253 2-74 (245)
110 PRK07679 pyrroline-5-carboxyla 97.4 0.0014 3E-08 66.0 11.0 98 175-298 1-103 (279)
111 PRK12491 pyrroline-5-carboxyla 97.3 0.0012 2.5E-08 66.6 9.7 66 178-253 3-71 (272)
112 PLN02688 pyrroline-5-carboxyla 97.3 0.0014 3.1E-08 65.1 10.0 93 178-297 1-98 (266)
113 TIGR01505 tartro_sem_red 2-hyd 97.3 0.0014 3.1E-08 66.1 10.0 62 179-253 1-63 (291)
114 PF01488 Shikimate_DH: Shikima 97.3 0.00069 1.5E-08 61.0 6.9 78 173-256 8-86 (135)
115 TIGR00872 gnd_rel 6-phosphoglu 97.3 0.00095 2.1E-08 68.0 8.4 90 178-296 1-95 (298)
116 PRK12480 D-lactate dehydrogena 97.2 0.0066 1.4E-07 62.9 14.3 138 153-324 116-260 (330)
117 PRK12549 shikimate 5-dehydroge 97.2 0.0013 2.8E-08 66.7 8.8 75 175-253 125-200 (284)
118 COG1893 ApbA Ketopantoate redu 97.2 0.0019 4.1E-08 66.2 9.8 118 178-318 1-123 (307)
119 PRK11559 garR tartronate semia 97.2 0.0027 6E-08 64.1 10.6 63 178-253 3-66 (296)
120 PRK15461 NADH-dependent gamma- 97.2 0.0017 3.6E-08 66.1 8.9 63 178-253 2-65 (296)
121 TIGR02354 thiF_fam2 thiamine b 97.1 0.0016 3.4E-08 62.8 8.3 99 175-292 19-142 (200)
122 PRK05708 2-dehydropantoate 2-r 97.1 0.0054 1.2E-07 62.7 12.7 120 177-318 2-125 (305)
123 PF10727 Rossmann-like: Rossma 97.1 0.002 4.2E-08 57.8 8.1 101 175-303 8-115 (127)
124 PRK08655 prephenate dehydrogen 97.1 0.0062 1.3E-07 65.5 13.2 64 178-253 1-66 (437)
125 COG0345 ProC Pyrroline-5-carbo 97.1 0.0028 6E-08 63.7 9.6 93 177-295 1-96 (266)
126 PLN00106 malate dehydrogenase 97.1 0.00053 1.2E-08 70.8 4.2 41 131-171 19-61 (323)
127 TIGR01771 L-LDH-NAD L-lactate 97.0 0.00021 4.5E-09 73.0 1.1 38 135-172 1-41 (299)
128 PRK06545 prephenate dehydrogen 97.0 0.0061 1.3E-07 63.7 12.1 67 178-253 1-68 (359)
129 cd01065 NAD_bind_Shikimate_DH 97.0 0.0029 6.4E-08 57.3 8.4 75 175-256 17-92 (155)
130 COG2084 MmsB 3-hydroxyisobutyr 97.0 0.0028 6.2E-08 64.2 8.5 64 178-253 1-65 (286)
131 PRK05442 malate dehydrogenase; 96.9 0.00042 9.2E-09 71.6 2.4 42 131-172 5-57 (326)
132 PLN02256 arogenate dehydrogena 96.9 0.011 2.5E-07 60.5 12.7 67 173-253 32-100 (304)
133 COG0300 DltE Short-chain dehyd 96.9 0.0097 2.1E-07 59.8 11.8 115 174-294 3-142 (265)
134 KOG2305|consensus 96.9 0.0029 6.2E-08 61.7 7.5 112 176-304 2-128 (313)
135 PF02558 ApbA: Ketopantoate re 96.9 0.0039 8.4E-08 56.4 8.2 116 180-317 1-121 (151)
136 PTZ00431 pyrroline carboxylate 96.9 0.0039 8.4E-08 62.3 8.8 90 176-298 2-94 (260)
137 cd00300 LDH_like L-lactate deh 96.9 0.00063 1.4E-08 69.5 3.0 40 133-172 1-43 (300)
138 PRK06928 pyrroline-5-carboxyla 96.9 0.0086 1.9E-07 60.3 11.2 97 177-298 1-102 (277)
139 PLN02350 phosphogluconate dehy 96.9 0.0042 9.1E-08 67.7 9.4 100 176-296 5-109 (493)
140 PRK12490 6-phosphogluconate de 96.9 0.0036 7.7E-08 63.8 8.4 90 178-295 1-95 (299)
141 PRK06476 pyrroline-5-carboxyla 96.8 0.0073 1.6E-07 60.0 9.8 67 178-253 1-69 (258)
142 COG1748 LYS9 Saccharopine dehy 96.8 0.016 3.5E-07 61.1 12.4 73 177-254 1-77 (389)
143 KOG2666|consensus 96.7 0.0022 4.7E-08 65.1 5.5 82 177-258 1-91 (481)
144 TIGR00873 gnd 6-phosphoglucona 96.7 0.0067 1.5E-07 65.7 9.7 97 179-298 1-104 (467)
145 PRK09599 6-phosphogluconate de 96.7 0.004 8.7E-08 63.4 7.4 63 178-253 1-67 (301)
146 cd05213 NAD_bind_Glutamyl_tRNA 96.7 0.0073 1.6E-07 62.0 9.2 105 175-303 176-282 (311)
147 cd01487 E1_ThiF_like E1_ThiF_l 96.7 0.013 2.9E-07 55.1 10.1 33 179-212 1-33 (174)
148 COG0569 TrkA K+ transport syst 96.7 0.013 2.9E-07 57.3 10.5 69 178-254 1-75 (225)
149 TIGR01759 MalateDH-SF1 malate 96.5 0.00058 1.2E-08 70.5 -0.5 42 131-172 4-56 (323)
150 PRK14982 acyl-ACP reductase; P 96.5 0.022 4.7E-07 59.3 11.0 74 174-257 152-227 (340)
151 PRK08644 thiamine biosynthesis 96.5 0.023 5.1E-07 55.1 10.6 36 175-211 26-61 (212)
152 TIGR01757 Malate-DH_plant mala 96.4 0.0027 5.8E-08 67.1 4.2 42 131-172 45-97 (387)
153 cd01338 MDH_choloroplast_like 96.4 0.00065 1.4E-08 70.1 -0.5 42 131-172 3-55 (322)
154 PRK05479 ketol-acid reductoiso 96.4 0.012 2.7E-07 60.9 8.9 68 173-253 13-81 (330)
155 PRK14806 bifunctional cyclohex 96.4 0.024 5.3E-07 64.6 12.0 92 178-294 4-97 (735)
156 PRK08291 ectoine utilization p 96.4 0.012 2.5E-07 61.0 8.5 73 177-253 132-205 (330)
157 PLN03209 translocon at the inn 96.4 0.045 9.7E-07 60.6 13.3 119 173-294 76-207 (576)
158 TIGR02371 ala_DH_arch alanine 96.4 0.012 2.6E-07 60.8 8.4 72 177-253 128-200 (325)
159 TIGR02356 adenyl_thiF thiazole 96.3 0.016 3.4E-07 55.8 8.5 75 175-253 19-119 (202)
160 COG0287 TyrA Prephenate dehydr 96.3 0.028 6E-07 57.0 10.5 68 177-253 3-72 (279)
161 PF03949 Malic_M: Malic enzyme 96.3 0.017 3.7E-07 57.7 8.7 126 176-322 24-170 (255)
162 PRK08618 ornithine cyclodeamin 96.3 0.013 2.8E-07 60.5 8.1 102 130-253 95-200 (325)
163 cd05311 NAD_bind_2_malic_enz N 96.2 0.027 5.8E-07 55.3 9.6 101 175-298 23-132 (226)
164 cd05312 NAD_bind_1_malic_enz N 96.2 0.03 6.5E-07 56.6 10.0 127 175-323 23-170 (279)
165 PRK13304 L-aspartate dehydroge 96.2 0.021 4.7E-07 57.2 9.0 67 177-253 1-69 (265)
166 PTZ00082 L-lactate dehydrogena 96.2 0.029 6.3E-07 57.9 10.1 31 131-162 7-37 (321)
167 PRK06141 ornithine cyclodeamin 96.2 0.017 3.8E-07 59.3 8.3 72 177-253 125-197 (314)
168 PLN02712 arogenate dehydrogena 96.2 0.047 1E-06 61.8 12.4 67 173-253 48-116 (667)
169 PRK15059 tartronate semialdehy 96.2 0.016 3.4E-07 59.0 7.8 62 178-253 1-63 (292)
170 PRK11199 tyrA bifunctional cho 96.2 0.034 7.3E-07 58.6 10.5 52 176-253 97-150 (374)
171 PF02719 Polysacc_synt_2: Poly 96.1 0.03 6.5E-07 57.0 9.5 167 180-369 1-193 (293)
172 cd00762 NAD_bind_malic_enz NAD 96.1 0.028 6E-07 56.1 9.0 129 175-324 23-172 (254)
173 TIGR02992 ectoine_eutC ectoine 96.1 0.02 4.3E-07 59.2 8.3 73 177-253 129-202 (326)
174 TIGR01692 HIBADH 3-hydroxyisob 96.1 0.018 3.8E-07 58.3 7.7 59 182-253 1-60 (288)
175 TIGR00465 ilvC ketol-acid redu 96.0 0.031 6.7E-07 57.6 9.4 65 176-253 2-67 (314)
176 PRK15469 ghrA bifunctional gly 96.0 0.064 1.4E-06 55.2 11.7 115 153-295 109-227 (312)
177 PLN00203 glutamyl-tRNA reducta 96.0 0.027 5.9E-07 61.8 9.3 107 175-300 264-375 (519)
178 PRK00045 hemA glutamyl-tRNA re 96.0 0.025 5.5E-07 60.5 8.9 108 175-302 180-288 (423)
179 TIGR03589 PseB UDP-N-acetylglu 96.0 0.024 5.1E-07 58.1 8.3 113 176-294 3-124 (324)
180 COG1712 Predicted dinucleotide 96.0 0.036 7.8E-07 54.2 8.9 95 178-298 1-97 (255)
181 PF00899 ThiF: ThiF family; I 96.0 0.031 6.8E-07 49.9 7.9 73 177-253 2-100 (135)
182 PRK06407 ornithine cyclodeamin 95.9 0.025 5.5E-07 57.8 8.2 73 177-253 117-190 (301)
183 PRK07340 ornithine cyclodeamin 95.9 0.024 5.3E-07 58.0 8.0 72 177-254 125-197 (304)
184 TIGR01035 hemA glutamyl-tRNA r 95.9 0.021 4.7E-07 61.0 7.9 107 175-302 178-285 (417)
185 PF02423 OCD_Mu_crystall: Orni 95.9 0.024 5.1E-07 58.3 7.8 71 178-253 129-200 (313)
186 PRK14106 murD UDP-N-acetylmura 95.9 0.059 1.3E-06 57.6 11.1 122 175-306 3-132 (450)
187 PF13460 NAD_binding_10: NADH( 95.9 0.088 1.9E-06 48.6 10.8 90 180-294 1-97 (183)
188 TIGR02853 spore_dpaA dipicolin 95.8 0.036 7.8E-07 56.4 8.6 104 174-306 148-253 (287)
189 TIGR01809 Shik-DH-AROM shikima 95.8 0.029 6.2E-07 56.9 7.9 77 175-255 123-200 (282)
190 PLN02166 dTDP-glucose 4,6-dehy 95.8 0.081 1.8E-06 56.9 11.5 110 176-294 119-233 (436)
191 PRK08605 D-lactate dehydrogena 95.8 0.025 5.5E-07 58.6 7.4 65 174-253 143-208 (332)
192 COG1086 Predicted nucleoside-d 95.8 0.087 1.9E-06 57.8 11.6 218 173-421 246-492 (588)
193 TIGR01470 cysG_Nterm siroheme 95.7 0.025 5.4E-07 54.7 6.8 69 175-254 7-78 (205)
194 PRK06718 precorrin-2 dehydroge 95.7 0.043 9.3E-07 52.9 8.4 68 175-253 8-78 (202)
195 PRK13243 glyoxylate reductase; 95.7 0.1 2.2E-06 54.2 11.6 114 153-294 114-240 (333)
196 cd01078 NAD_bind_H4MPT_DH NADP 95.7 0.046 9.9E-07 51.8 8.3 74 174-253 25-105 (194)
197 PRK13302 putative L-aspartate 95.7 0.026 5.7E-07 56.8 6.9 71 174-253 3-75 (271)
198 PRK01438 murD UDP-N-acetylmura 95.7 0.11 2.4E-06 56.1 12.3 78 173-257 12-90 (480)
199 PRK13940 glutamyl-tRNA reducta 95.7 0.025 5.5E-07 60.4 7.0 76 174-257 178-254 (414)
200 PRK06823 ornithine cyclodeamin 95.6 0.045 9.7E-07 56.4 8.6 72 177-253 128-200 (315)
201 PRK08306 dipicolinate synthase 95.6 0.049 1.1E-06 55.6 8.7 69 174-253 149-218 (296)
202 cd05292 LDH_2 A subgroup of L- 95.6 0.0039 8.4E-08 63.9 0.7 32 131-162 1-32 (308)
203 TIGR00507 aroE shikimate 5-deh 95.6 0.057 1.2E-06 54.1 9.0 74 175-256 115-189 (270)
204 PF02254 TrkA_N: TrkA-N domain 95.6 0.029 6.4E-07 48.2 6.0 90 180-295 1-97 (116)
205 COG0373 HemA Glutamyl-tRNA red 95.6 0.14 3.1E-06 54.5 12.2 75 174-257 175-250 (414)
206 COG0169 AroE Shikimate 5-dehyd 95.6 0.088 1.9E-06 53.5 10.2 77 175-255 124-200 (283)
207 PRK06719 precorrin-2 dehydroge 95.6 0.046 1E-06 50.6 7.6 66 175-253 11-78 (157)
208 PRK06194 hypothetical protein; 95.6 0.3 6.5E-06 48.5 14.0 47 175-223 4-51 (287)
209 PRK06199 ornithine cyclodeamin 95.5 0.044 9.6E-07 57.9 8.3 75 177-253 155-231 (379)
210 PLN02928 oxidoreductase family 95.5 0.12 2.5E-06 54.1 11.2 132 174-324 156-288 (347)
211 KOG2711|consensus 95.5 0.17 3.7E-06 52.3 12.0 132 173-323 17-175 (372)
212 TIGR01724 hmd_rel H2-forming N 95.5 0.16 3.4E-06 52.4 11.7 94 188-305 31-128 (341)
213 cd01075 NAD_bind_Leu_Phe_Val_D 95.5 0.058 1.3E-06 51.9 8.3 69 173-253 24-93 (200)
214 PTZ00325 malate dehydrogenase; 95.4 0.0047 1E-07 63.8 0.6 43 129-171 7-51 (321)
215 PRK13394 3-hydroxybutyrate deh 95.4 0.18 3.9E-06 49.0 11.7 113 175-294 5-143 (262)
216 PLN02650 dihydroflavonol-4-red 95.4 0.17 3.7E-06 52.1 12.0 116 176-294 4-127 (351)
217 PRK00258 aroE shikimate 5-dehy 95.4 0.068 1.5E-06 53.9 8.8 76 175-257 121-197 (278)
218 PRK07589 ornithine cyclodeamin 95.4 0.052 1.1E-06 56.7 8.1 72 177-253 129-201 (346)
219 PRK13301 putative L-aspartate 95.4 0.046 1E-06 54.8 7.4 89 178-294 3-95 (267)
220 PLN02712 arogenate dehydrogena 95.4 0.15 3.3E-06 57.7 12.4 65 175-253 367-433 (667)
221 cd00757 ThiF_MoeB_HesA_family 95.3 0.054 1.2E-06 53.0 7.7 34 176-210 20-53 (228)
222 PRK12475 thiamine/molybdopteri 95.3 0.041 9E-07 57.2 7.0 77 173-253 20-124 (338)
223 PLN03129 NADP-dependent malic 95.3 0.13 2.9E-06 56.7 11.2 128 173-324 317-467 (581)
224 PRK14027 quinate/shikimate deh 95.3 0.045 9.8E-07 55.5 7.0 76 175-254 125-203 (283)
225 PLN02427 UDP-apiose/xylose syn 95.2 0.15 3.2E-06 53.4 11.0 116 173-294 10-135 (386)
226 PRK06046 alanine dehydrogenase 95.2 0.058 1.3E-06 55.8 7.8 72 177-253 129-201 (326)
227 PRK15181 Vi polysaccharide bio 95.2 0.2 4.4E-06 51.7 11.7 118 174-294 12-140 (348)
228 PLN02206 UDP-glucuronate decar 95.2 0.16 3.6E-06 54.6 11.4 110 176-294 118-232 (442)
229 PRK07069 short chain dehydroge 95.1 0.79 1.7E-05 44.2 15.0 112 179-295 1-138 (251)
230 PRK07231 fabG 3-ketoacyl-(acyl 95.1 0.25 5.5E-06 47.6 11.5 46 176-223 4-50 (251)
231 cd00401 AdoHcyase S-adenosyl-L 95.1 0.11 2.4E-06 55.5 9.5 92 175-296 200-291 (413)
232 PRK06436 glycerate dehydrogena 95.1 0.23 4.9E-06 51.0 11.6 136 132-298 72-215 (303)
233 PLN02662 cinnamyl-alcohol dehy 95.1 0.26 5.7E-06 49.7 12.0 105 177-284 4-116 (322)
234 COG2423 Predicted ornithine cy 95.1 0.063 1.4E-06 55.6 7.4 100 132-253 100-203 (330)
235 PRK12749 quinate/shikimate deh 95.1 0.11 2.4E-06 52.8 9.1 75 175-254 122-205 (288)
236 cd01483 E1_enzyme_family Super 95.1 0.15 3.2E-06 45.9 9.0 32 179-211 1-32 (143)
237 PLN00198 anthocyanidin reducta 95.0 0.27 5.9E-06 50.3 12.0 117 174-294 6-130 (338)
238 PRK03562 glutathione-regulated 95.0 0.12 2.5E-06 58.2 10.0 136 177-343 400-542 (621)
239 PRK07688 thiamine/molybdopteri 95.0 0.11 2.4E-06 54.1 9.1 36 175-211 22-57 (339)
240 PRK13529 malate dehydrogenase; 95.0 0.24 5.1E-06 54.6 11.9 173 135-324 242-448 (563)
241 PRK03659 glutathione-regulated 94.9 0.12 2.6E-06 57.9 9.8 135 177-343 400-542 (601)
242 cd05291 HicDH_like L-2-hydroxy 94.9 0.0071 1.5E-07 61.8 0.1 32 131-162 1-32 (306)
243 PRK09496 trkA potassium transp 94.9 0.075 1.6E-06 56.7 7.9 66 178-253 1-73 (453)
244 TIGR01777 yfcH conserved hypot 94.9 0.064 1.4E-06 53.0 6.8 97 180-286 1-102 (292)
245 PRK07574 formate dehydrogenase 94.9 0.11 2.3E-06 55.1 8.9 95 175-295 190-285 (385)
246 PF03435 Saccharop_dh: Sacchar 94.9 0.034 7.4E-07 58.4 5.1 71 180-255 1-77 (386)
247 PRK00048 dihydrodipicolinate r 94.9 0.58 1.3E-05 46.7 13.6 66 177-253 1-68 (257)
248 PRK07523 gluconate 5-dehydroge 94.9 0.53 1.2E-05 45.8 13.2 48 175-224 8-56 (255)
249 PLN02240 UDP-glucose 4-epimera 94.8 0.38 8.2E-06 49.2 12.6 117 175-294 3-131 (352)
250 PRK12557 H(2)-dependent methyl 94.8 0.2 4.3E-06 52.3 10.4 56 189-253 32-89 (342)
251 CHL00194 ycf39 Ycf39; Provisio 94.8 0.078 1.7E-06 54.0 7.4 102 178-294 1-109 (317)
252 PTZ00075 Adenosylhomocysteinas 94.8 0.12 2.5E-06 56.1 8.9 93 173-296 250-343 (476)
253 TIGR03466 HpnA hopanoid-associ 94.8 0.071 1.5E-06 53.6 7.0 105 178-294 1-112 (328)
254 PRK07102 short chain dehydroge 94.8 0.45 9.8E-06 46.0 12.3 46 177-224 1-47 (243)
255 PRK10675 UDP-galactose-4-epime 94.8 0.21 4.6E-06 50.8 10.4 112 178-294 1-123 (338)
256 PLN03139 formate dehydrogenase 94.8 0.15 3.3E-06 54.0 9.6 139 131-295 143-292 (386)
257 PRK05476 S-adenosyl-L-homocyst 94.8 0.12 2.5E-06 55.6 8.6 91 175-296 210-301 (425)
258 PLN02494 adenosylhomocysteinas 94.7 0.097 2.1E-06 56.7 8.0 92 175-297 252-344 (477)
259 PRK08762 molybdopterin biosynt 94.7 0.098 2.1E-06 55.1 8.0 75 175-253 133-233 (376)
260 PRK07832 short chain dehydroge 94.7 0.56 1.2E-05 46.3 13.0 114 178-296 1-139 (272)
261 PLN02858 fructose-bisphosphate 94.7 0.12 2.7E-06 63.0 9.7 65 176-253 3-68 (1378)
262 PTZ00317 NADP-dependent malic 94.7 0.29 6.2E-06 54.0 11.6 133 173-324 293-447 (559)
263 PRK12829 short chain dehydroge 94.7 0.58 1.3E-05 45.5 12.9 76 174-256 8-97 (264)
264 COG1064 AdhP Zn-dependent alco 94.7 0.32 7E-06 50.6 11.4 96 173-297 163-262 (339)
265 TIGR02622 CDP_4_6_dhtase CDP-g 94.7 0.15 3.2E-06 52.6 9.0 114 176-295 3-127 (349)
266 PRK08340 glucose-1-dehydrogena 94.7 0.69 1.5E-05 45.2 13.4 72 178-256 1-87 (259)
267 PRK08643 acetoin reductase; Va 94.7 0.57 1.2E-05 45.5 12.8 112 178-296 3-140 (256)
268 PF02826 2-Hacid_dh_C: D-isome 94.7 0.092 2E-06 49.3 6.9 96 173-296 32-129 (178)
269 KOG1205|consensus 94.6 0.19 4.1E-06 51.0 9.4 119 173-298 8-153 (282)
270 PRK00421 murC UDP-N-acetylmura 94.6 0.25 5.5E-06 53.2 11.1 73 175-257 5-78 (461)
271 PRK07814 short chain dehydroge 94.6 0.48 1E-05 46.5 12.3 114 175-295 8-147 (263)
272 PF01118 Semialdhyde_dh: Semia 94.6 0.031 6.7E-07 49.1 3.4 72 179-253 1-74 (121)
273 PRK07774 short chain dehydroge 94.6 0.47 1E-05 45.8 12.0 76 175-256 4-94 (250)
274 PRK07326 short chain dehydroge 94.6 0.56 1.2E-05 44.9 12.4 46 176-223 5-51 (237)
275 PRK12939 short chain dehydroge 94.5 0.56 1.2E-05 45.1 12.3 76 175-256 5-95 (250)
276 TIGR00936 ahcY adenosylhomocys 94.5 0.16 3.4E-06 54.2 9.0 92 175-296 193-284 (406)
277 PRK08213 gluconate 5-dehydroge 94.5 0.36 7.8E-06 47.1 11.0 116 174-295 9-149 (259)
278 PRK08818 prephenate dehydrogen 94.5 0.15 3.3E-06 53.7 8.8 55 176-253 3-59 (370)
279 KOG1502|consensus 94.5 0.5 1.1E-05 48.9 12.3 117 176-298 5-131 (327)
280 PRK15116 sulfur acceptor prote 94.5 0.31 6.6E-06 49.2 10.4 38 173-211 26-63 (268)
281 PRK09496 trkA potassium transp 94.4 0.19 4.2E-06 53.6 9.6 70 175-253 229-305 (453)
282 PRK05866 short chain dehydroge 94.4 0.66 1.4E-05 46.8 13.0 76 175-256 38-128 (293)
283 PRK06198 short chain dehydroge 94.4 0.72 1.6E-05 44.8 12.9 114 175-295 4-144 (260)
284 PLN02989 cinnamyl-alcohol dehy 94.4 0.58 1.3E-05 47.4 12.6 115 177-294 5-128 (325)
285 PRK09310 aroDE bifunctional 3- 94.4 0.11 2.3E-06 56.7 7.5 69 175-253 330-398 (477)
286 PLN02858 fructose-bisphosphate 94.4 0.1 2.2E-06 63.6 8.1 66 176-254 323-389 (1378)
287 TIGR00518 alaDH alanine dehydr 94.4 0.052 1.1E-06 57.2 4.9 72 175-256 165-241 (370)
288 PRK00141 murD UDP-N-acetylmura 94.4 0.35 7.5E-06 52.5 11.4 114 174-298 12-131 (473)
289 PLN02214 cinnamoyl-CoA reducta 94.4 0.21 4.5E-06 51.6 9.3 108 176-293 9-125 (342)
290 PRK12429 3-hydroxybutyrate deh 94.3 0.51 1.1E-05 45.6 11.5 47 175-223 2-49 (258)
291 cd01491 Ube1_repeat1 Ubiquitin 94.3 0.19 4E-06 51.2 8.6 75 175-253 17-113 (286)
292 PRK12384 sorbitol-6-phosphate 94.3 0.86 1.9E-05 44.4 13.2 114 178-296 3-142 (259)
293 KOG1201|consensus 94.3 0.12 2.6E-06 52.5 7.1 132 173-307 34-191 (300)
294 COG4221 Short-chain alcohol de 94.3 0.28 6.2E-06 48.6 9.5 152 177-347 6-181 (246)
295 PRK08267 short chain dehydroge 94.3 0.11 2.4E-06 50.8 6.8 43 178-222 2-45 (260)
296 TIGR03206 benzo_BadH 2-hydroxy 94.3 0.96 2.1E-05 43.6 13.3 47 176-224 2-49 (250)
297 PRK05876 short chain dehydroge 94.2 0.78 1.7E-05 45.7 12.9 114 175-295 4-143 (275)
298 PRK05597 molybdopterin biosynt 94.2 0.061 1.3E-06 56.3 4.9 75 175-253 26-126 (355)
299 PRK06197 short chain dehydroge 94.2 0.54 1.2E-05 47.4 11.7 115 175-295 14-152 (306)
300 PRK08251 short chain dehydroge 94.1 0.83 1.8E-05 44.1 12.6 75 177-256 2-92 (248)
301 PLN02778 3,5-epimerase/4-reduc 94.1 0.53 1.1E-05 47.8 11.6 89 176-285 8-102 (298)
302 PRK13581 D-3-phosphoglycerate 94.1 0.55 1.2E-05 51.8 12.3 116 152-295 110-231 (526)
303 PRK05690 molybdopterin biosynt 94.1 0.39 8.4E-06 47.7 10.1 36 174-210 29-64 (245)
304 PRK05867 short chain dehydroge 94.0 0.79 1.7E-05 44.6 12.3 75 175-256 7-97 (253)
305 PRK06181 short chain dehydroge 94.0 0.8 1.7E-05 44.7 12.3 73 178-256 2-89 (263)
306 PLN02780 ketoreductase/ oxidor 94.0 0.62 1.3E-05 47.8 11.9 46 177-224 53-99 (320)
307 PRK09424 pntA NAD(P) transhydr 94.0 0.28 6E-06 53.9 9.7 108 173-296 161-287 (509)
308 PLN02896 cinnamyl-alcohol dehy 94.0 0.27 5.9E-06 50.7 9.3 76 174-256 7-90 (353)
309 PRK04690 murD UDP-N-acetylmura 93.9 0.25 5.5E-06 53.5 9.3 94 175-277 6-100 (468)
310 PRK09242 tropinone reductase; 93.9 1.3 2.8E-05 43.2 13.5 77 175-256 7-99 (257)
311 TIGR01921 DAP-DH diaminopimela 93.9 0.85 1.8E-05 47.3 12.6 140 175-349 1-148 (324)
312 PRK07806 short chain dehydroge 93.9 0.59 1.3E-05 45.1 11.0 113 175-294 4-134 (248)
313 PRK11908 NAD-dependent epimera 93.9 0.64 1.4E-05 47.8 11.8 107 177-295 1-118 (347)
314 PRK12548 shikimate 5-dehydroge 93.9 0.23 5E-06 50.4 8.3 76 175-254 124-208 (289)
315 PRK07478 short chain dehydroge 93.9 1.4 2.9E-05 42.9 13.5 113 176-295 5-143 (254)
316 PRK12826 3-ketoacyl-(acyl-carr 93.9 0.98 2.1E-05 43.4 12.4 48 175-224 4-52 (251)
317 PRK05650 short chain dehydroge 93.9 0.89 1.9E-05 44.7 12.3 110 178-294 1-135 (270)
318 PRK08265 short chain dehydroge 93.8 1.1 2.5E-05 43.9 13.0 46 175-222 4-50 (261)
319 PRK07890 short chain dehydroge 93.8 0.52 1.1E-05 45.7 10.5 47 175-223 3-50 (258)
320 PRK06139 short chain dehydroge 93.8 0.87 1.9E-05 47.0 12.6 77 175-256 5-95 (330)
321 PRK05875 short chain dehydroge 93.8 1.3 2.8E-05 43.6 13.4 47 175-223 5-52 (276)
322 PRK10669 putative cation:proto 93.8 0.17 3.6E-06 56.1 7.6 127 178-339 418-551 (558)
323 COG1052 LdhA Lactate dehydroge 93.8 0.36 7.7E-06 50.0 9.6 137 129-294 86-236 (324)
324 PRK12828 short chain dehydroge 93.7 0.21 4.5E-06 47.6 7.3 47 175-223 5-52 (239)
325 PF01073 3Beta_HSD: 3-beta hyd 93.7 0.17 3.7E-06 51.1 7.0 113 182-298 2-118 (280)
326 PRK05565 fabG 3-ketoacyl-(acyl 93.7 1.2 2.7E-05 42.5 12.7 75 176-256 4-94 (247)
327 PRK05600 thiamine biosynthesis 93.7 0.36 7.9E-06 50.9 9.6 37 174-211 38-74 (370)
328 PLN02583 cinnamoyl-CoA reducta 93.6 1.2 2.6E-05 44.9 13.0 103 177-284 6-117 (297)
329 PRK06914 short chain dehydroge 93.6 0.67 1.5E-05 45.7 11.0 76 176-256 2-92 (280)
330 PRK06196 oxidoreductase; Provi 93.6 0.98 2.1E-05 45.8 12.4 112 175-294 24-155 (315)
331 COG0111 SerA Phosphoglycerate 93.6 0.42 9E-06 49.6 9.7 117 152-295 112-234 (324)
332 PRK07666 fabG 3-ketoacyl-(acyl 93.6 1.4 3.1E-05 42.2 13.0 75 175-256 5-95 (239)
333 PRK06172 short chain dehydroge 93.6 0.35 7.5E-06 47.0 8.7 48 175-224 5-53 (253)
334 PRK05562 precorrin-2 dehydroge 93.5 0.22 4.9E-06 48.8 7.2 66 175-253 23-93 (223)
335 PRK07677 short chain dehydroge 93.5 1.5 3.3E-05 42.6 13.2 110 178-294 2-137 (252)
336 KOG0409|consensus 93.5 0.22 4.7E-06 50.8 7.2 68 176-256 34-102 (327)
337 PRK08085 gluconate 5-dehydroge 93.5 1.1 2.4E-05 43.5 12.2 48 175-224 7-55 (254)
338 PRK06500 short chain dehydroge 93.4 1.4 2.9E-05 42.5 12.6 43 175-219 4-47 (249)
339 PRK07424 bifunctional sterol d 93.4 0.35 7.5E-06 51.7 9.1 102 175-284 176-291 (406)
340 PF03059 NAS: Nicotianamine sy 93.4 0.28 6E-06 49.7 7.9 100 176-290 120-226 (276)
341 PF01408 GFO_IDH_MocA: Oxidore 93.4 0.13 2.7E-06 44.4 4.8 66 178-253 1-70 (120)
342 PRK05872 short chain dehydroge 93.4 1.3 2.8E-05 44.5 12.9 75 174-256 6-96 (296)
343 TIGR02415 23BDH acetoin reduct 93.4 0.37 8.1E-06 46.6 8.6 111 178-294 1-136 (254)
344 PRK08945 putative oxoacyl-(acy 93.3 1.3 2.8E-05 42.8 12.3 49 174-224 9-58 (247)
345 PRK07024 short chain dehydroge 93.3 0.51 1.1E-05 46.1 9.5 44 177-222 2-46 (257)
346 TIGR01082 murC UDP-N-acetylmur 93.3 0.53 1.1E-05 50.6 10.3 69 179-257 1-70 (448)
347 PRK07831 short chain dehydroge 93.3 1.9 4.1E-05 42.1 13.5 79 173-256 13-108 (262)
348 PRK07454 short chain dehydroge 93.3 1.5 3.2E-05 42.2 12.6 76 176-256 5-94 (241)
349 PRK08703 short chain dehydroge 93.3 2.2 4.8E-05 40.9 13.8 48 174-223 3-51 (239)
350 PTZ00117 malate dehydrogenase; 93.3 0.025 5.3E-07 58.4 0.1 32 130-162 5-36 (319)
351 PRK05855 short chain dehydroge 93.3 0.96 2.1E-05 49.3 12.5 117 173-295 311-452 (582)
352 PRK12936 3-ketoacyl-(acyl-carr 93.3 0.56 1.2E-05 44.9 9.6 45 175-221 4-49 (245)
353 PRK00257 erythronate-4-phospha 93.3 0.16 3.6E-06 53.7 6.2 63 173-253 112-175 (381)
354 cd01080 NAD_bind_m-THF_DH_Cycl 93.3 0.15 3.3E-06 47.8 5.3 58 173-256 40-98 (168)
355 TIGR01327 PGDH D-3-phosphoglyc 93.2 0.83 1.8E-05 50.4 11.9 117 152-295 108-230 (525)
356 PRK08339 short chain dehydroge 93.2 1 2.2E-05 44.5 11.6 117 175-296 6-145 (263)
357 PRK07453 protochlorophyllide o 93.1 1.8 3.8E-05 44.1 13.5 114 175-294 4-144 (322)
358 PRK08410 2-hydroxyacid dehydro 93.1 0.53 1.2E-05 48.4 9.6 134 131-295 85-233 (311)
359 PRK13403 ketol-acid reductoiso 93.1 0.38 8.1E-06 49.8 8.4 67 173-253 12-79 (335)
360 PRK07825 short chain dehydroge 93.1 1.1 2.4E-05 44.1 11.7 113 175-295 3-137 (273)
361 TIGR02632 RhaD_aldol-ADH rhamn 93.1 1.7 3.7E-05 49.4 14.5 48 174-223 411-459 (676)
362 PRK07063 short chain dehydroge 93.1 1.4 3.1E-05 42.9 12.3 77 175-256 5-97 (260)
363 PRK06940 short chain dehydroge 93.1 1.4 3E-05 43.8 12.4 85 179-272 4-102 (275)
364 PRK05653 fabG 3-ketoacyl-(acyl 93.1 1.1 2.3E-05 42.8 11.2 47 175-223 3-50 (246)
365 PLN02986 cinnamyl-alcohol dehy 93.1 1.4 3E-05 44.7 12.5 104 177-284 5-117 (322)
366 PF01113 DapB_N: Dihydrodipico 93.1 0.19 4.1E-06 44.5 5.5 73 178-253 1-75 (124)
367 PRK02705 murD UDP-N-acetylmura 93.0 0.64 1.4E-05 49.9 10.5 123 179-311 2-137 (459)
368 COG2910 Putative NADH-flavin r 93.0 0.46 9.9E-06 45.4 8.1 72 178-257 1-74 (211)
369 PRK07904 short chain dehydroge 93.0 1.4 3E-05 43.3 12.1 114 176-294 7-145 (253)
370 PRK06487 glycerate dehydrogena 93.0 0.46 1E-05 49.0 8.9 111 152-295 112-234 (317)
371 PRK06124 gluconate 5-dehydroge 92.9 1.1 2.4E-05 43.5 11.2 49 174-224 8-57 (256)
372 PRK08324 short chain dehydroge 92.9 1.2 2.6E-05 50.7 12.9 114 175-294 420-557 (681)
373 PRK06182 short chain dehydroge 92.9 0.29 6.3E-06 48.3 7.1 109 176-295 2-133 (273)
374 PLN02253 xanthoxin dehydrogena 92.9 3.7 8.1E-05 40.5 15.1 46 175-222 16-62 (280)
375 PRK07062 short chain dehydroge 92.9 1.2 2.5E-05 43.7 11.3 77 175-256 6-98 (265)
376 PF00670 AdoHcyase_NAD: S-aden 92.8 0.22 4.8E-06 46.4 5.7 68 174-254 20-87 (162)
377 TIGR03736 PRTRC_ThiF PRTRC sys 92.8 0.66 1.4E-05 46.2 9.4 35 176-210 10-53 (244)
378 PRK07109 short chain dehydroge 92.8 1.7 3.6E-05 44.8 12.8 76 174-256 5-96 (334)
379 PRK07067 sorbitol dehydrogenas 92.8 0.39 8.5E-06 46.8 7.8 45 176-222 5-50 (257)
380 COG2344 AT-rich DNA-binding pr 92.8 0.2 4.3E-06 47.8 5.3 99 173-299 80-182 (211)
381 PRK06125 short chain dehydroge 92.8 3 6.5E-05 40.6 14.0 115 176-295 6-140 (259)
382 PRK07060 short chain dehydroge 92.7 0.46 9.9E-06 45.7 8.1 42 175-218 7-49 (245)
383 TIGR01763 MalateDH_bact malate 92.7 0.034 7.4E-07 57.0 0.2 32 130-162 1-32 (305)
384 PRK05717 oxidoreductase; Valid 92.7 0.86 1.9E-05 44.4 10.1 41 175-217 8-49 (255)
385 PRK05854 short chain dehydroge 92.6 2.3 5E-05 43.3 13.5 78 174-256 11-104 (313)
386 PRK11790 D-3-phosphoglycerate 92.6 0.34 7.3E-06 51.8 7.6 113 153-295 122-240 (409)
387 PLN02657 3,8-divinyl protochlo 92.6 0.81 1.8E-05 48.4 10.4 113 173-294 56-181 (390)
388 PRK10538 malonic semialdehyde 92.6 0.42 9.1E-06 46.5 7.6 41 178-220 1-42 (248)
389 PRK06949 short chain dehydroge 92.6 1.9 4.1E-05 41.8 12.2 47 175-223 7-54 (258)
390 PRK12827 short chain dehydroge 92.5 1.3 2.8E-05 42.5 10.9 33 176-210 5-38 (249)
391 PLN00141 Tic62-NAD(P)-related 92.5 0.29 6.2E-06 48.0 6.4 75 173-256 13-96 (251)
392 PRK06180 short chain dehydroge 92.5 1.9 4.2E-05 42.6 12.4 40 176-217 3-43 (277)
393 PRK08277 D-mannonate oxidoredu 92.4 2.3 5.1E-05 41.9 12.9 48 175-224 8-56 (278)
394 COG0686 Ald Alanine dehydrogen 92.4 0.25 5.3E-06 50.7 5.8 76 173-256 164-242 (371)
395 PRK08862 short chain dehydroge 92.4 2.6 5.7E-05 40.8 13.0 114 176-295 4-144 (227)
396 TIGR01758 MDH_euk_cyt malate d 92.4 0.039 8.4E-07 57.1 0.1 32 132-163 1-38 (324)
397 TIGR01181 dTDP_gluc_dehyt dTDP 92.4 0.38 8.1E-06 48.0 7.2 112 179-294 1-124 (317)
398 PF13241 NAD_binding_7: Putati 92.3 1.1 2.4E-05 38.2 9.0 63 175-253 5-68 (103)
399 PRK12367 short chain dehydroge 92.3 0.58 1.3E-05 46.1 8.4 101 173-283 10-124 (245)
400 TIGR01087 murD UDP-N-acetylmur 92.3 0.66 1.4E-05 49.5 9.4 111 179-298 1-112 (433)
401 PRK08589 short chain dehydroge 92.3 1.7 3.8E-05 42.9 11.7 113 175-295 4-141 (272)
402 PRK09186 flagellin modificatio 92.2 1.9 4.2E-05 41.7 11.8 46 176-223 3-49 (256)
403 PRK09072 short chain dehydroge 92.2 2.4 5.2E-05 41.4 12.6 74 176-256 4-91 (263)
404 PRK03369 murD UDP-N-acetylmura 92.2 0.93 2E-05 49.4 10.5 93 174-278 9-102 (488)
405 PRK09291 short chain dehydroge 92.2 1.4 3.1E-05 42.6 10.9 74 178-256 3-84 (257)
406 PRK08219 short chain dehydroge 92.1 0.71 1.5E-05 43.7 8.5 70 177-256 3-82 (227)
407 PRK07097 gluconate 5-dehydroge 92.1 4.3 9.4E-05 39.7 14.3 115 175-297 8-148 (265)
408 PRK06223 malate dehydrogenase; 92.1 0.041 8.9E-07 56.0 -0.1 31 131-162 3-33 (307)
409 PRK14192 bifunctional 5,10-met 92.1 0.45 9.8E-06 48.3 7.4 56 173-254 155-211 (283)
410 PRK02472 murD UDP-N-acetylmura 92.1 0.57 1.2E-05 50.1 8.5 75 176-257 4-80 (447)
411 PRK13303 L-aspartate dehydroge 92.1 0.73 1.6E-05 46.2 8.8 68 177-254 1-70 (265)
412 PLN02819 lysine-ketoglutarate 92.0 0.37 8E-06 57.1 7.5 73 176-254 568-657 (1042)
413 PRK06138 short chain dehydroge 92.0 2.2 4.8E-05 41.0 12.0 45 176-222 4-49 (252)
414 PRK05599 hypothetical protein; 92.0 2.7 5.8E-05 41.0 12.6 115 178-297 1-139 (246)
415 PRK07035 short chain dehydroge 92.0 1.7 3.6E-05 42.1 11.1 48 175-224 6-54 (252)
416 PRK15409 bifunctional glyoxyla 92.0 1.6 3.5E-05 45.2 11.4 138 131-295 88-237 (323)
417 PRK08125 bifunctional UDP-gluc 91.9 1.2 2.7E-05 50.3 11.5 109 173-294 311-431 (660)
418 COG1063 Tdh Threonine dehydrog 91.9 0.39 8.4E-06 50.1 6.9 97 179-296 171-271 (350)
419 PLN02695 GDP-D-mannose-3',5'-e 91.9 0.3 6.4E-06 51.2 6.0 107 176-294 20-136 (370)
420 COG0362 Gnd 6-phosphogluconate 91.9 3.4 7.4E-05 43.8 13.5 43 177-221 3-45 (473)
421 PRK15438 erythronate-4-phospha 91.9 0.38 8.3E-06 50.9 6.8 62 174-253 113-175 (378)
422 PLN02306 hydroxypyruvate reduc 91.9 0.59 1.3E-05 49.6 8.2 141 141-295 119-273 (386)
423 COG0451 WcaG Nucleoside-diphos 91.9 0.47 1E-05 47.2 7.2 98 179-283 2-105 (314)
424 PRK12825 fabG 3-ketoacyl-(acyl 91.7 2.7 6E-05 39.9 12.1 76 175-256 4-95 (249)
425 PRK06128 oxidoreductase; Provi 91.7 3.5 7.6E-05 41.4 13.4 115 175-295 53-192 (300)
426 cd00704 MDH Malate dehydrogena 91.7 0.05 1.1E-06 56.2 -0.0 32 132-163 2-39 (323)
427 PRK08217 fabG 3-ketoacyl-(acyl 91.7 4.9 0.00011 38.5 13.9 46 176-223 4-50 (253)
428 PRK08628 short chain dehydroge 91.7 3.3 7.2E-05 40.2 12.8 46 175-223 5-51 (258)
429 PRK08263 short chain dehydroge 91.6 0.66 1.4E-05 45.9 7.9 109 177-294 3-135 (275)
430 COG1648 CysG Siroheme synthase 91.6 0.75 1.6E-05 44.7 8.0 130 175-335 10-143 (210)
431 PRK12747 short chain dehydroge 91.6 3.8 8.2E-05 39.7 13.1 46 176-223 3-50 (252)
432 PRK07576 short chain dehydroge 91.6 4.7 0.0001 39.6 13.9 47 175-223 7-54 (264)
433 PRK14194 bifunctional 5,10-met 91.6 0.34 7.3E-06 49.7 5.8 57 173-256 155-213 (301)
434 TIGR01745 asd_gamma aspartate- 91.5 0.56 1.2E-05 49.4 7.4 69 178-254 1-73 (366)
435 TIGR01832 kduD 2-deoxy-D-gluco 91.5 4.6 9.9E-05 38.9 13.5 36 175-212 3-39 (248)
436 PRK01710 murD UDP-N-acetylmura 91.5 0.69 1.5E-05 49.9 8.4 121 176-306 13-141 (458)
437 PRK09135 pteridine reductase; 91.5 2.8 6.1E-05 40.1 12.0 47 176-224 5-53 (249)
438 PRK01368 murD UDP-N-acetylmura 91.4 1.1 2.4E-05 48.5 9.9 90 175-276 4-93 (454)
439 cd05191 NAD_bind_amino_acid_DH 91.3 0.61 1.3E-05 38.3 6.2 37 173-210 19-55 (86)
440 PRK07877 hypothetical protein; 91.3 1.1 2.5E-05 51.2 10.2 34 176-210 106-139 (722)
441 PRK12409 D-amino acid dehydrog 91.3 0.22 4.9E-06 52.4 4.4 33 178-212 2-34 (410)
442 PF07991 IlvN: Acetohydroxy ac 91.3 0.9 2E-05 42.5 7.7 65 176-253 3-68 (165)
443 PRK12746 short chain dehydroge 91.3 4.1 8.9E-05 39.3 13.0 47 175-223 4-52 (254)
444 PRK12937 short chain dehydroge 91.2 3.1 6.8E-05 39.8 12.0 74 176-256 4-94 (245)
445 TIGR01214 rmlD dTDP-4-dehydror 91.2 0.63 1.4E-05 46.1 7.3 93 179-294 1-99 (287)
446 PRK06113 7-alpha-hydroxysteroi 91.2 3.2 7E-05 40.3 12.2 48 175-224 9-57 (255)
447 PRK06482 short chain dehydroge 91.2 3.6 7.7E-05 40.5 12.6 108 178-294 3-134 (276)
448 PRK06924 short chain dehydroge 91.2 0.74 1.6E-05 44.5 7.6 33 178-212 2-35 (251)
449 PRK12742 oxidoreductase; Provi 91.1 1.3 2.8E-05 42.4 9.1 72 175-256 4-86 (237)
450 PRK08328 hypothetical protein; 91.1 0.26 5.5E-06 48.5 4.2 37 175-212 25-61 (231)
451 COG0771 MurD UDP-N-acetylmuram 91.1 1.2 2.6E-05 48.1 9.6 75 177-258 7-82 (448)
452 PRK12823 benD 1,6-dihydroxycyc 91.0 4.4 9.6E-05 39.3 13.0 38 174-213 5-43 (260)
453 PRK04148 hypothetical protein; 91.0 1.7 3.7E-05 39.3 9.1 65 176-252 16-84 (134)
454 PLN02520 bifunctional 3-dehydr 91.0 0.79 1.7E-05 50.7 8.4 72 175-256 377-450 (529)
455 PRK07236 hypothetical protein; 90.9 0.27 5.9E-06 51.4 4.5 37 174-212 3-39 (386)
456 PRK00711 D-amino acid dehydrog 90.8 0.27 5.8E-06 51.7 4.5 34 178-213 1-34 (416)
457 PRK06701 short chain dehydroge 90.7 4 8.7E-05 41.0 12.7 116 174-296 43-183 (290)
458 TIGR01408 Ube1 ubiquitin-activ 90.7 1.3 2.7E-05 52.7 10.1 75 175-253 22-118 (1008)
459 PF00070 Pyr_redox: Pyridine n 90.7 0.4 8.7E-06 38.6 4.3 34 179-214 1-34 (80)
460 PRK06153 hypothetical protein; 90.6 0.3 6.4E-06 51.7 4.4 35 177-212 176-210 (393)
461 PRK07074 short chain dehydroge 90.6 0.72 1.6E-05 44.9 6.9 43 178-222 3-46 (257)
462 TIGR01963 PHB_DH 3-hydroxybuty 90.6 4 8.7E-05 39.2 12.1 72 178-256 2-89 (255)
463 TIGR00745 apbA_panE 2-dehydrop 90.6 1.9 4.2E-05 42.9 10.2 95 188-301 2-100 (293)
464 PRK02006 murD UDP-N-acetylmura 90.6 1.7 3.7E-05 47.4 10.5 76 175-257 5-81 (498)
465 PRK08936 glucose-1-dehydrogena 90.6 5.3 0.00011 38.9 13.1 115 174-295 4-145 (261)
466 cd01336 MDH_cytoplasmic_cytoso 90.5 0.069 1.5E-06 55.3 -0.3 33 131-163 3-41 (325)
467 TIGR02355 moeB molybdopterin s 90.5 0.32 6.9E-06 48.2 4.3 37 175-212 22-58 (240)
468 PLN02572 UDP-sulfoquinovose sy 90.5 0.91 2E-05 48.9 8.1 117 173-293 43-189 (442)
469 PRK08300 acetaldehyde dehydrog 90.5 0.77 1.7E-05 47.1 7.1 71 175-254 2-79 (302)
470 cd00755 YgdL_like Family of ac 90.4 0.32 6.9E-06 48.0 4.2 36 176-212 10-45 (231)
471 PRK12743 oxidoreductase; Provi 90.3 4.4 9.6E-05 39.4 12.3 114 177-295 2-140 (256)
472 cd01076 NAD_bind_1_Glu_DH NAD( 90.3 0.91 2E-05 44.6 7.3 36 173-210 27-63 (227)
473 cd01492 Aos1_SUMO Ubiquitin ac 90.2 0.34 7.5E-06 46.4 4.2 37 175-212 19-55 (197)
474 PRK07791 short chain dehydroge 90.2 5.6 0.00012 39.8 13.1 77 175-257 4-104 (286)
475 PRK06935 2-deoxy-D-gluconate 3 90.1 4 8.8E-05 39.7 11.8 46 174-222 12-58 (258)
476 cd01485 E1-1_like Ubiquitin ac 90.1 0.36 7.8E-06 46.3 4.2 36 176-212 18-53 (198)
477 PRK08063 enoyl-(acyl carrier p 90.1 4.3 9.4E-05 39.0 11.9 46 176-223 3-50 (250)
478 PRK08993 2-deoxy-D-gluconate 3 90.0 7.1 0.00015 38.0 13.5 112 175-295 8-145 (253)
479 PRK04207 glyceraldehyde-3-phos 90.0 1 2.2E-05 47.0 7.8 78 177-254 1-87 (341)
480 PRK08416 7-alpha-hydroxysteroi 90.0 5.6 0.00012 38.9 12.7 50 173-224 4-55 (260)
481 PRK06179 short chain dehydroge 90.0 0.46 1E-05 46.6 5.0 38 176-215 3-41 (270)
482 PRK05993 short chain dehydroge 89.9 0.75 1.6E-05 45.7 6.5 39 177-217 4-43 (277)
483 KOG1208|consensus 89.9 0.99 2.2E-05 46.6 7.5 114 175-294 33-170 (314)
484 PRK12862 malic enzyme; Reviewe 89.9 1.4 2.9E-05 50.9 9.3 115 175-319 191-315 (763)
485 PRK07201 short chain dehydroge 89.9 3.9 8.4E-05 45.8 12.9 77 174-256 368-459 (657)
486 COG0673 MviM Predicted dehydro 89.8 1.3 2.8E-05 45.1 8.3 70 175-253 1-75 (342)
487 PLN02686 cinnamoyl-CoA reducta 89.8 1.2 2.5E-05 46.7 8.1 108 174-284 50-169 (367)
488 COG1206 Gid NAD(FAD)-utilizing 89.6 0.23 5E-06 51.3 2.6 130 177-309 3-153 (439)
489 PRK00683 murD UDP-N-acetylmura 89.6 1.5 3.2E-05 46.7 8.9 68 176-256 2-70 (418)
490 PRK06753 hypothetical protein; 89.6 0.36 7.8E-06 49.9 4.1 34 178-213 1-34 (373)
491 PRK13535 erythrose 4-phosphate 89.5 2.8 6.2E-05 43.7 10.6 34 178-211 2-35 (336)
492 PLN03075 nicotianamine synthas 89.5 4.7 0.0001 41.3 11.9 106 176-294 123-233 (296)
493 TIGR03215 ac_ald_DH_ac acetald 89.5 2.8 6E-05 42.7 10.3 68 178-253 2-72 (285)
494 PRK08278 short chain dehydroge 89.5 5.2 0.00011 39.6 12.2 37 175-213 4-41 (273)
495 PRK07856 short chain dehydroge 89.4 2.8 6.1E-05 40.6 10.1 38 175-214 4-42 (252)
496 PRK08226 short chain dehydroge 89.4 3.6 7.8E-05 40.1 10.8 37 175-213 4-41 (263)
497 TIGR01179 galE UDP-glucose-4-e 89.3 2.9 6.2E-05 41.7 10.2 108 179-294 1-120 (328)
498 PRK11889 flhF flagellar biosyn 89.3 7.3 0.00016 41.8 13.4 134 176-324 240-389 (436)
499 PRK07984 enoyl-(acyl carrier p 89.3 6.1 0.00013 39.1 12.5 75 175-256 4-95 (262)
500 PRK01581 speE spermidine synth 89.3 5.3 0.00011 42.2 12.3 111 174-295 148-269 (374)
No 1
>KOG1495|consensus
Probab=100.00 E-value=2.4e-72 Score=541.80 Aligned_cols=327 Identities=59% Similarity=1.006 Sum_probs=314.8
Q ss_pred hHHhhhhccCCCCCCCCCcEEEEecchhHHHHHHHHHhhhhHHHHHHHHHHHHhhhCCCCCCCCceEEEEecccchHHHH
Q psy12825 114 TVDRLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQTMARDAVSTVDRLLSQVAPSIESPDQKITVVGAGQVGMACT 193 (488)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~ki~vvg~g~vg~~~a~~~~~k~la~eivlid~~~~~e~~~~~~~~~~KIaIIGAG~vG~~ia 193 (488)
.++++++++.++.+...+||+|||+|+||||||++||+|+|||
T Consensus 4 ~k~~~~~~~~~~~~~~~~KItVVG~G~VGmAca~siL~k~Lad------------------------------------- 46 (332)
T KOG1495|consen 4 VKSELIANSAEEKEFKHNKITVVGVGQVGMACAISILLKGLAD------------------------------------- 46 (332)
T ss_pred hhhhhhhcccccccccCceEEEEccchHHHHHHHHHHHhhhhh-------------------------------------
Confidence 3488899988776777899999999999999999999998874
Q ss_pred HHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecccccCCCcchHhhHhhhHHH
Q psy12825 194 YSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKI 273 (488)
Q Consensus 194 ~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~~k~G~~r~dll~~N~~i 273 (488)
||+|+|+++++++|.+|||+|...|...++|..+.||...+++++||+|+|..+++|++|++++++|+.+
T Consensus 47 ----------el~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~sa~S~lvIiTAGarq~~gesRL~lvQrNV~i 116 (332)
T KOG1495|consen 47 ----------ELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSVSANSKLVIITAGARQSEGESRLDLVQRNVDI 116 (332)
T ss_pred ----------ceEEEecCcchhhhhhhhhccccccccCCceEecCcccccCCCcEEEEecCCCCCCCcHHHHHHHHHHHH
Confidence 4678999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEEeecCCC
Q psy12825 274 FKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDS 353 (488)
Q Consensus 274 i~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G~HG~~ 353 (488)
++.+.+.+.+|.|+++++++|||+|+|||+.||.+|||++||||.||+||+.|||++++++||++|.++++||+||||++
T Consensus 117 fK~iip~lv~ySpd~~llvvSNPVDilTYv~wKLSgfP~nRViGsGcnLDsaRFryLi~~~Lg~~pss~hgwIiGEHGdS 196 (332)
T KOG1495|consen 117 FKAIIPALVKYSPDCILLVVSNPVDILTYVTWKLSGFPKNRVIGSGCNLDSARFRYLIGNRLGVHPSSCHGWIIGEHGDS 196 (332)
T ss_pred HHHHHHHHhhcCCCeEEEEecCchHHHHHHHHHHcCCcccceeccCcCccHHHHHHHHHHHhCCCcccceEEEeeccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHHHHHHHHcCCCcEEEEEee
Q psy12825 354 SVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTL 433 (488)
Q Consensus 354 ~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~ 433 (488)
.+|.||.+.+.|.++.++.++.++..+++.|+++.+++.+.+|||++.||+++|++|.+.++++++|+.|++.++||++.
T Consensus 197 sV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklKGyTswaIglsva~l~~ail~n~~~i~~Vst~ 276 (332)
T KOG1495|consen 197 SVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLKGYTSWAIGLSVADLAQAILRNLRRIHPVSTM 276 (332)
T ss_pred cceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCcCceeeeeec
Confidence 99999999999999999999888888999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 434 IQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 434 ~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
..|.||+.+|+|+|+||.++++|+..++..+|+++|.++|++|++.|.++++++
T Consensus 277 ~kg~~gI~~dVflSlPc~l~~~Gi~~vv~~~Lt~~E~akL~kSa~tl~~~q~~l 330 (332)
T KOG1495|consen 277 VKGLYGIDDDVFLSLPCLLGANGITHVVKQKLTDEEVAKLKKSAKTLLEAQKSL 330 (332)
T ss_pred cccccCCCCceEEecceeecCCchhhhhcccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999875
No 2
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=3.9e-67 Score=533.32 Aligned_cols=310 Identities=62% Similarity=1.066 Sum_probs=292.5
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~ 255 (488)
+.+||+|||||.||+++++.|+.+++.+||+|+|++++++++.++||+|+..+....++..++||++++|||+||+++|.
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~~~adivvitaG~ 81 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVTANSKVVIVTAGA 81 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHhCCCCEEEECCCC
Confidence 35699999999999999999999999999999999999999999999999865544577777899999999999999999
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHh
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKL 335 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~L 335 (488)
+++||++|.|++.+|+++++++++.|++++|++|+|++|||+|++|+++++++|+|++||||+||.||+.|+++++|+++
T Consensus 82 ~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~gt~Ld~~R~~~~la~~l 161 (312)
T cd05293 82 RQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERL 161 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEecCchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHH
Q psy12825 336 GLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVAS 415 (488)
Q Consensus 336 gv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~ 415 (488)
++++++|+++||||||++++|+||+++++|+|+.++........++++++++.+++++++++|++.||+++|++|+++++
T Consensus 162 ~v~~~~v~~~v~GeHG~s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~a~a~~~ 241 (312)
T cd05293 162 GVAPSSVHGWIIGEHGDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVAD 241 (312)
T ss_pred CCChhhEEEEEeecCCCCccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 99999999999999999999999999999999988764322223345688999999999999999999999999999999
Q ss_pred HHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHH
Q psy12825 416 ISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQK 485 (488)
Q Consensus 416 ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~ 485 (488)
++++|+++++.++++|++++|.||+|+|++||+||++|++|++++++++|+++|+++|++|++.|++.++
T Consensus 242 ii~ail~d~~~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~l~L~~~E~~~l~~s~~~i~~~~~ 311 (312)
T cd05293 242 LVDAILRNTGRVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQPLTEEEQEKLQKSADTLWEVQK 311 (312)
T ss_pred HHHHHHcCCCeEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEecCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998875
No 3
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=3.1e-67 Score=528.05 Aligned_cols=305 Identities=44% Similarity=0.714 Sum_probs=286.1
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCC-CCcEEEcCCccccCCCcEEEEecccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLR-SPKIESGSDIAMSEGSRIVIITAGVR 256 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~-~~~v~~ttd~eal~dADiVIitag~~ 256 (488)
+||+|||||.||+++++.|+.+++.+||+|+|++++.++|.++||.|+..+.. ..++..+.+|++++|||+||+++|.|
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p 80 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP 80 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence 59999999999999999998888888999999999999999999999975432 23444335699999999999999999
Q ss_pred cCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhC
Q psy12825 257 SLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLG 336 (488)
Q Consensus 257 ~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lg 336 (488)
|||||+|+|++..|++|+++++++|.++|||++++++|||+|+||+++++.+|+|++||||+||.||++|++++||++++
T Consensus 81 rKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~~k~sg~p~~rvig~gt~LDsaR~~~~lae~~~ 160 (313)
T COG0039 81 RKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIAMKFSGFPKNRVIGSGTVLDSARFRTFLAEKLG 160 (313)
T ss_pred CCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHHHHhcCCCccceecccchHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCC-cchhhHHHHHH
Q psy12825 337 LSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGY-TSWALGLSVAS 415 (488)
Q Consensus 337 v~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~-t~~s~A~a~~~ 415 (488)
++|++|+++|+||||++++|+||+++++|+|+.++.+. +.+++++++.+++++++++|++.||. ++||+|.++++
T Consensus 161 v~~~~V~~~ViGeHGdt~vp~~S~a~v~G~pl~~~~~~----~~~~~~~~i~~~v~~~g~eII~~kG~~t~~~~A~a~a~ 236 (313)
T COG0039 161 VSPKDVHAYVIGEHGDTMVPLWSQATVGGKPLEELLKE----DTEEDLEELIERVRNAGAEIIEAKGAGTYYGPAAALAR 236 (313)
T ss_pred CChhHceeeEeccCCCceEEeeeeeeECCEEHHHHhhc----ccHhHHHHHHHHHHhhHHHHHHccCccchhhHHHHHHH
Confidence 99999999999999999999999999999999998753 23567789999999999999999987 99999999999
Q ss_pred HHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 416 ISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 416 ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
+.++|++|+++++|++++++|+|| ++|+||++||++|++|++++++++|+++|+++|++|++.|++.++.+
T Consensus 237 ~~~ail~d~~~vl~~s~~l~G~yg-~~dv~~gvP~~lg~~Gv~~iie~~l~~~E~~~l~~s~~~lk~~i~~~ 307 (313)
T COG0039 237 MVEAILRDEKRVLPVSVYLDGEYG-VEDVYFGVPAVLGKNGVEEILELLLSDDEQEKLDKSAEELKKNIELV 307 (313)
T ss_pred HHHHHHcCCCceEEEEEeecCccC-cCCeEEEeeEEEcCCCcEEEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 67899999999999999999999999999999999999999888754
No 4
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.9e-66 Score=525.61 Aligned_cols=302 Identities=37% Similarity=0.628 Sum_probs=283.1
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCC--CCcEEEcCCccccCCCcEEEEecccc
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLR--SPKIESGSDIAMSEGSRIVIITAGVR 256 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~--~~~v~~ttd~eal~dADiVIitag~~ 256 (488)
||+|||||.||+++|+.|+.+++.+||+|+|++++++++.++||+|...+.. ..++. ++||++++|||+||+++|.+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~-~~~y~~~~~aDivvitaG~~ 79 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIR-AGDYDDCADADIIVITAGPS 79 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEE-ECCHHHhCCCCEEEECCCCC
Confidence 8999999999999999999999999999999999999999999999876543 23444 57899999999999999999
Q ss_pred cCCCcc--hHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHH
Q psy12825 257 SLVGET--RLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQK 334 (488)
Q Consensus 257 ~k~G~~--r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~ 334 (488)
++||++ |+|++..|+++++++++.|.+++|++++|++|||+|+||+++++.+|||++||||+||.||++|++++||++
T Consensus 80 ~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~~k~sg~p~~rviG~gt~LDs~R~~~~la~~ 159 (307)
T cd05290 80 IDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIAATEFDYPANKVIGTGTMLDTARLRRIVADK 159 (307)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHHHHHhCcChhheecccchHHHHHHHHHHHHH
Confidence 999999 699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHH
Q psy12825 335 LGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVA 414 (488)
Q Consensus 335 Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~ 414 (488)
+|++|++|+++||||||++++|+||+++++|.|+.++.+... .++..++++.+++++++++|++.||+++|++|.+++
T Consensus 160 l~v~~~~V~~~ViGeHGds~vp~wS~~~v~g~~l~~~~~~~~--~~~~~~~~i~~~v~~~g~~Ii~~KG~t~~~ia~a~~ 237 (307)
T cd05290 160 YGVDPKNVTGYVLGEHGSHAFPVWSLVNIAGLPLDELEALFG--KEPIDKDELLEEVVQAAYDVFNRKGWTNAGIAKSAS 237 (307)
T ss_pred hCCCcccEEEEEEecCCCceEEeeeeeEECCEEHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHHccCeehHHHHHHHH
Confidence 999999999999999999999999999999999988754211 123457889999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHH
Q psy12825 415 SISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQ 484 (488)
Q Consensus 415 ~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~ 484 (488)
+++++|++|++.++|+|++++|+|| ++|+|||+||+++++|++++++++|+++|+++|++|++.|++.+
T Consensus 238 ~ii~ail~d~~~v~~vsv~~~G~yg-~~~v~~svP~~ig~~Gv~~i~~l~L~~~E~~~l~~s~~~i~~~~ 306 (307)
T cd05290 238 RLIKAILLDERSILPVCTLLSGEYG-LSDVALSLPTVIGAKGIERVLEIPLDEWELEKLHKSAKAIRETI 306 (307)
T ss_pred HHHHHHHhCCCeEEEEEEeeCCccC-CCCEEEEEEEEEeCCCceEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999 67899999999999999999999999999999999999999765
No 5
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=1.2e-65 Score=528.60 Aligned_cols=310 Identities=54% Similarity=0.888 Sum_probs=291.7
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRS 257 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~~ 257 (488)
+||+|||||.||+++++.|+.+++.+||+|+|++++++++.++||+|+..+....+|..++||++++|||+||+++|.++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~~~daDiVVitAG~~~ 117 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAVTAGSDLCIVTAGARQ 117 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHHhCCCCEEEECCCCCC
Confidence 69999999999999999999999999999999999999999999999976544456666678999999999999999999
Q ss_pred CCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCC
Q psy12825 258 LVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGL 337 (488)
Q Consensus 258 k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv 337 (488)
++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|+++++++|||++||||+||.||++|++++||+++|+
T Consensus 118 k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~~k~sg~p~~rviG~gt~LDs~R~r~~lA~~l~v 197 (350)
T PLN02602 118 IPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVAWKLSGFPANRVIGSGTNLDSSRFRFLIADHLDV 197 (350)
T ss_pred CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHHhCCCHHHEEeecchHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHHHH
Q psy12825 338 SPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417 (488)
Q Consensus 338 ~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~ii 417 (488)
++++|+++||||||++++|+||+++++|+|+.++.......++++.++++.+++++++++|++.||+++|++|+++++++
T Consensus 198 ~~~~V~~~ViGeHGds~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~KG~t~~gia~a~a~ii 277 (350)
T PLN02602 198 NAQDVQAYIVGEHGDSSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKLKGYTSWAIGYSVASLV 277 (350)
T ss_pred CccceeeeEEecCCCceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876432123555667899999999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEEeeecCcCCCC-CceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 418 HTLLNNTNKIHAVSTLIQGHHGIE-EEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 418 ~aIl~~~~~v~~vsv~~~G~ygl~-~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++|++|+++++|++++++|+||+| .++|+|+||++|++|++++++++|+++|+++|++|++.|++.++.+
T Consensus 278 ~ail~d~~~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~l~L~~~E~~~l~~sa~~l~~~~~~~ 348 (350)
T PLN02602 278 RSLLRDQRRIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVNVHLTDEEAERLRKSAKTLWEVQSQL 348 (350)
T ss_pred HHHHhcCCCeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEecCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999994 7999999999999999999999999999999999999999988765
No 6
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=3.4e-64 Score=512.72 Aligned_cols=309 Identities=42% Similarity=0.761 Sum_probs=290.0
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~ 255 (488)
..+||+|||||.+|+++++.|+..++.+||+|+|++++++++.++|++|+..+.....+. +++|++++|||+||+++|.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~-~~~~~~~~~adivIitag~ 83 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY-AGDYSDCKDADLVVITAGA 83 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE-eCCHHHhCCCCEEEEecCC
Confidence 457999999999999999999999999999999999999999999999997544333443 5789999999999999999
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHh
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKL 335 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~L 335 (488)
|++||++|.|++..|++++++++..+.+++|++|+|++|||+|++++++++++|+|++||||+||.||+.|+++++|+++
T Consensus 84 ~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~~k~sg~p~~~viG~gt~LDs~R~~~~la~~l 163 (315)
T PRK00066 84 PQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKL 163 (315)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHHHHHhCCCHHHEeecCchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHH
Q psy12825 336 GLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVAS 415 (488)
Q Consensus 336 gv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~ 415 (488)
|++|++|+++||||||++++|+||+++++|.|+.++.... ..+++++++++.++++++++++++.||+++|++|+++++
T Consensus 164 ~v~~~~V~~~viGeHG~s~v~~~S~~~v~g~~l~~~~~~~-~~~~~~~~~~i~~~v~~~g~~ii~~kg~t~~~~a~~~~~ 242 (315)
T PRK00066 164 DVDPRSVHAYIIGEHGDTEFPVWSHANVAGVPLEEYLEEN-EQYDEEDLDEIFENVRDAAYEIIEKKGATYYGIAMALAR 242 (315)
T ss_pred CCCcccEEEEEEecCCCcceecceeceECCEEHHHHhhhc-cCcCHHHHHHHHHHHHHHHHHHHhcCCeehHHHHHHHHH
Confidence 9999999999999999999999999999999999876431 235567788999999999999999999999999999999
Q ss_pred HHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 416 ISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 416 ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++++|+++++.++|+|++.+|+|| ++++|||+||++|++|++++++++|+++|+++|++|+++|++.++++
T Consensus 243 i~~ail~~~~~v~~~sv~~~g~yg-~~~v~~S~Pv~ig~~Gv~~i~~l~L~~~E~~~L~~s~~~l~~~~~~~ 313 (315)
T PRK00066 243 ITKAILNNENAVLPVSAYLEGQYG-EEDVYIGVPAVVNRNGIREIVELPLNDDEKQKFAHSADVLKEIMDEA 313 (315)
T ss_pred HHHHHHcCCCeEEEEEEEeccccC-CCCEEEEeEEEEeCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999 67999999999999999999999999999999999999999988875
No 7
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=1.1e-63 Score=505.52 Aligned_cols=298 Identities=46% Similarity=0.816 Sum_probs=277.4
Q ss_pred EEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCC-CcEEEcCCccccCCCcEEEEecccccCCC
Q psy12825 182 VVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRS-PKIESGSDIAMSEGSRIVIITAGVRSLVG 260 (488)
Q Consensus 182 IIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~-~~v~~ttd~eal~dADiVIitag~~~k~G 260 (488)
|||+|.||+++++.|+.+++.+||+|+|++++++++.++||+|+..+... .++. ++||++++|||+||+++|.|++||
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~-~~~~~~~~daDivVitag~~rk~g 79 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR-SGDYSDCKDADLVVITAGAPQKPG 79 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe-cCCHHHHCCCCEEEECCCCCCCCC
Confidence 68999999999999999999999999999999999999999999754433 3443 578999999999999999999999
Q ss_pred cchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCC
Q psy12825 261 ETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPE 340 (488)
Q Consensus 261 ~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~ 340 (488)
++|.|++.+|+++++++++.|.+++|++++|++|||+|++|+++++++++|++||||+||.||++|+++++|++++++|+
T Consensus 80 ~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~~l~v~~~ 159 (299)
T TIGR01771 80 ETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQ 159 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHhCCCHHHEEeccchHHHHHHHHHHHHHhCcCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHHHHHHH
Q psy12825 341 SVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHTL 420 (488)
Q Consensus 341 ~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~ii~aI 420 (488)
+|+++||||||++++|+||+++++|+|+.++..... .+++.+++++.++++.++++|++.||+++|++|+++++++++|
T Consensus 160 ~V~~~v~GeHG~s~vp~~S~~~v~g~pl~~~~~~~~-~~~~~~~~~i~~~v~~~g~~ii~~kG~t~~~~a~a~~~~i~ai 238 (299)
T TIGR01771 160 SVHAYIIGEHGDSEVPVWSSATIGGVPLLDYLKAKG-TETDLDLEEIEKEVRDAAYEIINRKGATYYGIGMAVARIVEAI 238 (299)
T ss_pred eEEEEEEecCCCceeeceeeeEECCEEHHHHhhhcc-cccHHHHHHHHHHHHHHHHHHhhcCCeeeHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988753211 0123356789999999999999999999999999999999999
Q ss_pred HcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHH
Q psy12825 421 LNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQ 482 (488)
Q Consensus 421 l~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~ 482 (488)
+.|+++++|+|++.+|+||++ |+|||+||+||++|++++++++|+++|+++|++|++.|++
T Consensus 239 l~d~~~v~~~s~~~~g~yg~~-~~~~s~P~~ig~~Gv~~i~~l~L~~~E~~~l~~s~~~ik~ 299 (299)
T TIGR01771 239 LHDENRVLPVSAYLDGEYGIK-DVYIGVPAVLGRNGVEEIIELPLSDEEKEAFQKSAETLKK 299 (299)
T ss_pred HcCCCcEEEEEEEecccCCCC-CEEEEEEEEEeCCeeEEEccCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999975 7999999999999999999999999999999999999874
No 8
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=1.2e-62 Score=499.75 Aligned_cols=305 Identities=42% Similarity=0.705 Sum_probs=283.7
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRS 257 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~~ 257 (488)
+||+|||+|.+|+++++.|+..++..+|+|+|++++++++.++|++|...+........+.+++++++||+||+++|.|+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence 48999999999999999999999888999999999999999999999864332222223567889999999999999999
Q ss_pred CCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCC
Q psy12825 258 LVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGL 337 (488)
Q Consensus 258 k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv 337 (488)
++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|++++++++||++||||+||.||++|++++||+++++
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~~~~~g~p~~~v~g~gt~LDs~R~~~~la~~l~v 160 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLNV 160 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHhCcCHHHEeeccchHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHHHH
Q psy12825 338 SPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417 (488)
Q Consensus 338 ~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~ii 417 (488)
++++|+++||||||++++|+||+++++|.|+.+++... .+.+++++++.+++++++++|++.||+++|++|.++++++
T Consensus 161 ~~~~v~~~V~G~Hg~s~~~~~S~~~v~g~~~~~~~~~~--~~~~~~~~~~~~~v~~~g~~ii~~kg~t~~~~a~a~~~~~ 238 (306)
T cd05291 161 DPRSVHAYVLGEHGDSQFVAWSTVTVGGKPLLDLLKEG--KLSELDLDEIEEDVRKAGYEIINGKGATYYGIATALARIV 238 (306)
T ss_pred CcccceEEEEecCCCceeecceeeEEcCEEHHHHhhcc--ccChHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876431 2345668899999999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHH
Q psy12825 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQK 485 (488)
Q Consensus 418 ~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~ 485 (488)
++|+++++.++|+|++.+|+|| ++|+|||+||++|++|++++++++|+++|+++|++|+++|++.++
T Consensus 239 ~ail~~~~~v~~~s~~~~g~yg-~~~v~~s~P~~ig~~Gv~~i~~~~l~~~E~~~l~~s~~~l~~~~~ 305 (306)
T cd05291 239 KAILNDENAILPVSAYLDGEYG-EKDVYIGVPAIIGRNGVEEVIELDLTEEEQEKFEKSADIIKENIK 305 (306)
T ss_pred HHHHcCCCEEEEEEEEeccccC-CCCEEEEEEEEEeCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999 579999999999999999999999999999999999999998765
No 9
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=9e-63 Score=502.90 Aligned_cols=304 Identities=22% Similarity=0.294 Sum_probs=279.2
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCC-----eEEEEeCCh--hHHHHHHHHHhhcCC-CCCCCcEEEcCCccccCCC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYS-----NFCLIDSNE--DRCKGEMLDLQHGAP-FLRSPKIESGSDIAMSEGS 246 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~-----el~L~Di~~--e~l~g~~~dL~~~~~-~~~~~~v~~ttd~eal~dA 246 (488)
++.||+|||| |.||+++++.|+.+++.+ ||+|+|+++ ++++|.++||+|+.. +....++. +++|++++||
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~~~~~~~~da 80 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT-TDPEEAFKDV 80 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe-cChHHHhCCC
Confidence 5789999999 999999999999999988 999999965 669999999999873 22223333 5679999999
Q ss_pred cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCC-CcEEEEEeCCchhHHHHHHHhc-CCCCCcEEeecCChHH
Q psy12825 247 RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSP-DCILLIISNPVDVLTYISWKLS-GFPKNRVIGSGTNLDS 324 (488)
Q Consensus 247 DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p-~a~vIv~TNPvdi~t~~~~k~s-g~p~~rViG~gt~lds 324 (488)
|+||+++|.++++|++|.|++..|++++++++++|.+++| ++++|++|||+|+||+++++.+ |||++||||+ |.||+
T Consensus 81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~LDs 159 (323)
T TIGR01759 81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIASKNAPDIPPKNFSAM-TRLDH 159 (323)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEe-eHHHH
Confidence 9999999999999999999999999999999999999998 9999999999999999999999 9999999999 99999
Q ss_pred HHHHHHHHHHhCCCCCCcee-EEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcC
Q psy12825 325 MRFRVLLAQKLGLSPESVHG-FIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKG 403 (488)
Q Consensus 325 ~R~~~~lA~~Lgv~p~~V~~-~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg 403 (488)
+|++++||+++|++|++|+. +||||||++++|+||+++++|+|+.++... +...++++.+++++++++|++.||
T Consensus 160 ~R~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~pl~~~~~~-----~~~~~~~i~~~v~~~g~~Ii~~kG 234 (323)
T TIGR01759 160 NRAKYQLAAKAGVPVSDVKNVIIWGNHSNTQVPDFTHATVDGRPVKEVIKD-----DKWLEGEFIPTVQQRGAAVIEARG 234 (323)
T ss_pred HHHHHHHHHHhCcChHHeEEeEEEecCCCceeeccccCEECCccHHHHhcc-----hhhHHHHHHHHHHhhHHHHHhccC
Confidence 99999999999999999965 699999999999999999999999887531 011257899999999999999999
Q ss_pred Ccchh-hHHHHHHHHHHHHcCC--CcEEEEEeeecC-cCCCCCceEEEEEEEEcCCceEEEec-cCCCHHHHHHHHHHHH
Q psy12825 404 YTSWA-LGLSVASISHTLLNNT--NKIHAVSTLIQG-HHGIEEEVFLSLPCVMADNGVTHIIN-QNLTPDEAEKLRKSAA 478 (488)
Q Consensus 404 ~t~~s-~A~a~~~ii~aIl~~~--~~v~~vsv~~~G-~ygl~~d~~~svPv~igk~Gv~~i~~-l~L~~~E~~~L~~sa~ 478 (488)
+++|+ +|+++++++++|++|+ +.++|+|++++| +||+|+|+|||+||++|++|++++++ ++|+++|+++|++|++
T Consensus 235 ~t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l~L~~~E~~~l~~sa~ 314 (323)
T TIGR01759 235 ASSAASAANAAIDHVRDWVTGTPEGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGLPLDDFVRGKLDATED 314 (323)
T ss_pred CcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHH
Confidence 99995 6799999999999998 999999999999 89998899999999999999999999 9999999999999999
Q ss_pred HHHHHHHh
Q psy12825 479 TISQIQKG 486 (488)
Q Consensus 479 ~i~~~~~~ 486 (488)
.|++.++.
T Consensus 315 ~lk~~~~~ 322 (323)
T TIGR01759 315 ELLEEKEE 322 (323)
T ss_pred HHHHHHhc
Confidence 99988764
No 10
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=2.4e-62 Score=496.37 Aligned_cols=299 Identities=44% Similarity=0.769 Sum_probs=283.1
Q ss_pred EEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecccccCC
Q psy12825 180 ITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLV 259 (488)
Q Consensus 180 IaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~~k~ 259 (488)
|+|||+|.||+++++.++.+++.++|+|+|++++++++.++||+|........++..++||++++|||+||+++|.|+++
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p~~~ 80 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPRKP 80 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCCCCC
Confidence 68999999999999999999999999999999999999999999987543345666667899999999999999999999
Q ss_pred CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCCCC
Q psy12825 260 GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSP 339 (488)
Q Consensus 260 G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p 339 (488)
|++|.+++.+|+++++++++.|+++||++|+|++|||+|++++++++++|+|++||||+||.+|+.|+++++|+++++++
T Consensus 81 ~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~~~~sg~~~~kviG~gt~lDs~r~~~~la~~l~v~~ 160 (300)
T cd00300 81 GETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDP 160 (300)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHHHHHhCcCHHHEEecCCcHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHHHHHH
Q psy12825 340 ESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHT 419 (488)
Q Consensus 340 ~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~ii~a 419 (488)
++|+++|+||||++++|+||+++++|.|+.++.+. +++.++++.+++++++++|++.||+++|++|+++++++++
T Consensus 161 ~~v~~~viGeHg~s~v~~~S~~~v~g~p~~~~~~~-----~~~~~~~l~~~v~~~~~~ii~~kg~t~~~~a~a~~~~~~a 235 (300)
T cd00300 161 QSVHAYVLGEHGDSQVVAWSTATVGGLPLEELAPF-----TKLDLEAIEEEVRTSGYEIIRLKGATNYGIATAIADIVKS 235 (300)
T ss_pred ccEEEEEEeccCCceeeeeeeeEECCEEHHHhhcc-----cHHHHHHHHHHHHHHHHHHHHccCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987642 2456789999999999999999999999999999999999
Q ss_pred HHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHH
Q psy12825 420 LLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQ 484 (488)
Q Consensus 420 Il~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~ 484 (488)
|++++++++|++++.+|+|| ++++|||+||++|++|++++++++|+++|+++|++|+++|++.+
T Consensus 236 i~~~~~~v~~~s~~~~g~yg-~~~~~~s~Pv~ig~~Gi~~i~~l~L~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd00300 236 ILLDERRVLPVSAVQEGQYG-IEDVALSVPAVVGREGVVRILEIPLTEDEEAKLQKSAEALKEVL 299 (300)
T ss_pred HHcCCCeEEEEEEEecCccC-CCCEEEEEEEEEeCCCeEEEecCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999 67999999999999999999999999999999999999999765
No 11
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=9.2e-62 Score=495.87 Aligned_cols=309 Identities=28% Similarity=0.463 Sum_probs=288.0
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCC-CCcEEEcCCccccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLR-SPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~-~~~v~~ttd~eal~dADiVIita 253 (488)
.+.+||+|||||+||+++++.++..++ .+|+|+|++++++++.++|+.|...+.. ..++..++||++++||||||+++
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHhCCCCEEEECC
Confidence 467899999999999999999999987 6899999999999999999999854332 35677678999999999999999
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHH
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQ 333 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~ 333 (488)
|.++++|++|.|++..|.++++++++.|+++||++|+|++|||+|++++++++++++|++||+|+||.+|++|++++||+
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~lds~R~~~~la~ 161 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAE 161 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh--cCCcchhhHH
Q psy12825 334 KLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTSWALGL 411 (488)
Q Consensus 334 ~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~--kg~t~~s~A~ 411 (488)
+++++|++|+++|+||||++++|+||+++++|+|+.++.+. ..+++++++++.+++++++++|++. ||+++|++|+
T Consensus 162 ~l~v~~~~v~~~viGeHg~~~v~~~s~~~v~g~p~~~~~~~--~~~~~~~~~~i~~~v~~~g~~ii~~~~kg~t~~~~a~ 239 (319)
T PTZ00117 162 KLGVSPGDVSAVVIGGHGDLMVPLPRYCTVNGIPLSDFVKK--GAITEKEINEIIKKTRNMGGEIVKLLKKGSAFFAPAA 239 (319)
T ss_pred HhCCCcccceEEEeecCCCcEEeceeeceECCEEHHHHhhc--cccCHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHH
Confidence 99999999999999999999999999999999999987643 1245667889999999999999996 7899999999
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 412 SVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 412 a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++++++++|++|+++++|+|++++|+||++ |+|||+||+++++|++++++++|+++|+++|++|++.|++.++.+
T Consensus 240 a~~~~~~ail~~~~~v~~~s~~~~g~yg~~-~~~~s~P~~ig~~Gv~~i~~l~l~~~E~~~l~~s~~~l~~~~~~~ 314 (319)
T PTZ00117 240 AIVAMIEAYLKDEKRVLVCSVYLNGQYNCK-NLFVGVPVVIGGKGIEKVIELELNAEEKELFDKSIESIQELTQKA 314 (319)
T ss_pred HHHHHHHHHhcCCCeEEEEEEEeccccCCC-CeEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999996 899999999999999999999999999999999999999887654
No 12
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=2.9e-62 Score=499.74 Aligned_cols=303 Identities=18% Similarity=0.279 Sum_probs=277.9
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCC-----eEEEEeCCh--hHHHHHHHHHhhcC-CCCCCCcEEEcCCccccCCC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYS-----NFCLIDSNE--DRCKGEMLDLQHGA-PFLRSPKIESGSDIAMSEGS 246 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~-----el~L~Di~~--e~l~g~~~dL~~~~-~~~~~~~v~~ttd~eal~dA 246 (488)
+++||+|||| |.||+++++.|+..++.+ +|+|+|+++ +++++.++||+|+. .+....++. +++|++++||
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~-~~~y~~~~da 81 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT-DDPNVAFKDA 81 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe-cChHHHhCCC
Confidence 5789999998 999999999999999888 999999954 56999999999987 332223333 5678999999
Q ss_pred cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCchhHHHHHHHhc-CCCCCcEEeecCChHH
Q psy12825 247 RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPVDVLTYISWKLS-GFPKNRVIGSGTNLDS 324 (488)
Q Consensus 247 DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPvdi~t~~~~k~s-g~p~~rViG~gt~lds 324 (488)
|+||+++|.++++|++|.|++..|++++++++++|.+++ |++++|++|||+|++|+++++.+ |||++||||+ |.||+
T Consensus 82 DiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~LDs 160 (326)
T PRK05442 82 DVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAMKNAPDLPAENFTAM-TRLDH 160 (326)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHHHEEee-eHHHH
Confidence 999999999999999999999999999999999999987 79999999999999999999999 9999999999 99999
Q ss_pred HHHHHHHHHHhCCCCCCceeE-EEeecCCCcccccccceecCccccccCCCCCCCCChH-HHHHHHHHHhhhHHHHHHhc
Q psy12825 325 MRFRVLLAQKLGLSPESVHGF-IIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTE-NFVRLHADVVNSAYEVIKLK 402 (488)
Q Consensus 325 ~R~~~~lA~~Lgv~p~~V~~~-V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~-~~~el~~~v~~~~~eIi~~k 402 (488)
+|++++||++++++|++|+++ ||||||++++|+||+++++|+|+.++... .+ .++++.+++++++++|++.|
T Consensus 161 ~R~r~~la~~l~v~~~~V~~~vV~GeHG~s~~~~~S~~~v~g~pl~~~~~~------~~~~~~~i~~~v~~~g~~Ii~~k 234 (326)
T PRK05442 161 NRALSQLAAKAGVPVADIKKMTVWGNHSATQYPDFRHATIDGKPAAEVIND------QAWLEDTFIPTVQKRGAAIIEAR 234 (326)
T ss_pred HHHHHHHHHHhCcChHHeEEeEEEECCcCceeeccccCEECCEEHHHHccc------hhhHHHHHHHHHHhhHHHHHhCc
Confidence 999999999999999999995 59999999999999999999999887531 11 25689999999999999999
Q ss_pred CCcchhhHHH-HHHHHHHHHcC--CCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEec-cCCCHHHHHHHHHHHH
Q psy12825 403 GYTSWALGLS-VASISHTLLNN--TNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIIN-QNLTPDEAEKLRKSAA 478 (488)
Q Consensus 403 g~t~~s~A~a-~~~ii~aIl~~--~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~-l~L~~~E~~~L~~sa~ 478 (488)
|+++|++|.+ +++++++|+++ +++++|+|++++|+||+|+++|||+||++| +|+++++. ++|+++|+++|++|++
T Consensus 235 G~t~~~~a~~~~~~iv~ail~~~~~~~i~~~sv~~~g~ygi~~~v~~s~P~~ig-~Gv~~iv~~l~L~~~E~~~l~~s~~ 313 (326)
T PRK05442 235 GASSAASAANAAIDHVRDWVLGTPEGDWVSMGVPSDGSYGIPEGLIFGFPVTCE-NGEYEIVQGLEIDDFSREKIDATLA 313 (326)
T ss_pred CCccHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCccCCcCCeEEEEEEEEc-CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999998 59999999999 899999999999999998999999999999 99999976 9999999999999999
Q ss_pred HHHHHHHhh
Q psy12825 479 TISQIQKGL 487 (488)
Q Consensus 479 ~i~~~~~~~ 487 (488)
+|++..+.+
T Consensus 314 ~l~~~~~~~ 322 (326)
T PRK05442 314 ELEEERDAV 322 (326)
T ss_pred HHHHHHHHH
Confidence 999877654
No 13
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=6.6e-62 Score=504.54 Aligned_cols=308 Identities=19% Similarity=0.252 Sum_probs=280.5
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCC-----eEEEE--eCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCcccc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYS-----NFCLI--DSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDIAMS 243 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~-----el~L~--Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~eal 243 (488)
+..++.||+|||| |.||+++++.|+.+++++ .|+|+ |++++++++.++||+|++. +....+. .+++|+++
T Consensus 40 ~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~-~~~~~v~i~~~~y~~~ 118 (387)
T TIGR01757 40 SWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLY-PLLREVSIGIDPYEVF 118 (387)
T ss_pred cCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhh-hhcCceEEecCCHHHh
Confidence 4556899999999 999999999999999887 56666 8899999999999999872 2223454 35678999
Q ss_pred CCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCCh
Q psy12825 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNL 322 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~l 322 (488)
+|||+||+++|.|++||++|.|++..|+++++++++.|++++ |++++|++|||+|+||+++++.+++|++|+||+||.|
T Consensus 119 kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~~k~sg~~~~rviG~gT~L 198 (387)
T TIGR01757 119 EDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAMKNAPNIPRKNFHALTRL 198 (387)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHHHHHcCCCcccEEEecchh
Confidence 999999999999999999999999999999999999999986 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCce-eEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh
Q psy12825 323 DSMRFRVLLAQKLGLSPESVH-GFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL 401 (488)
Q Consensus 323 ds~R~~~~lA~~Lgv~p~~V~-~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~ 401 (488)
|++|++++||++++++|++|+ ++||||||++|+|+||+++++|+|+.++.+.. +..++++.+++++++++|++.
T Consensus 199 DsaR~r~~LA~~l~v~~~~V~~~~V~GeHGds~vp~~S~a~V~G~pl~~~~~~~-----~~~~~ei~~~v~~~g~eIi~~ 273 (387)
T TIGR01757 199 DENRAKCQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVNAKIGGRPAKEVIKDT-----KWLEEEFTPTVQKRGGALIKK 273 (387)
T ss_pred HHHHHHHHHHHHHCcChhHcceeEEEecCCCcEEecceeeEECCEEhHHhcccc-----cchHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999995 89999999999999999999999998875321 112578999999999999999
Q ss_pred cCCcch-hhHHHHHHHHHHHH--cCCCcEEEEEeeecCc-CCCCCceEEEEEEEEcCCceEEEe-ccCCCHHHHHHHHHH
Q psy12825 402 KGYTSW-ALGLSVASISHTLL--NNTNKIHAVSTLIQGH-HGIEEEVFLSLPCVMADNGVTHII-NQNLTPDEAEKLRKS 476 (488)
Q Consensus 402 kg~t~~-s~A~a~~~ii~aIl--~~~~~v~~vsv~~~G~-ygl~~d~~~svPv~igk~Gv~~i~-~l~L~~~E~~~L~~s 476 (488)
||.++| ++|.++++++++|+ +++++++|+|++.+|+ ||+++|+|||+||+++++|+++++ +++|+++|+++|++|
T Consensus 274 KG~t~~~s~a~ai~~~i~ai~~g~d~~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l~L~~~E~~~l~~S 353 (387)
T TIGR01757 274 WGRSSAASTAVSIADAIKSLVVPTPEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDVSMDDFLRERIRKS 353 (387)
T ss_pred cCchhHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCCCCCCHHHHHHHHHH
Confidence 998888 88999999999999 8899999999999997 999889999999999999999996 899999999999999
Q ss_pred HHHHHHHHHh
Q psy12825 477 AATISQIQKG 486 (488)
Q Consensus 477 a~~i~~~~~~ 486 (488)
+++|++..+.
T Consensus 354 a~~L~~e~~~ 363 (387)
T TIGR01757 354 EDELLKEKEC 363 (387)
T ss_pred HHHHHHHHHH
Confidence 9999866543
No 14
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=7.3e-62 Score=510.99 Aligned_cols=307 Identities=19% Similarity=0.230 Sum_probs=281.7
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHc-------CCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCcccc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQ-------GIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDIAMS 243 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~-------~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~eal 243 (488)
+..++.||+|||| |.||+++++.|+.+ ++..||+|+|+++++++|.++||+|++. +...++. .++||+++
T Consensus 96 ~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~-~~~~~v~i~~~~ye~~ 174 (444)
T PLN00112 96 SWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLY-PLLREVSIGIDPYEVF 174 (444)
T ss_pred cCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhh-hhcCceEEecCCHHHh
Confidence 4557899999999 99999999999999 6667999999999999999999999873 2223454 45688999
Q ss_pred CCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhc-cCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCCh
Q psy12825 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAK-GSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNL 322 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~-~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~l 322 (488)
+|||+||+++|.|+++|++|.|++..|++|++++++.|++ ++|++++|++|||+|+||+++++.++++++|+||+||.|
T Consensus 175 kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~sg~~~~rViGtgT~L 254 (444)
T PLN00112 175 QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRL 254 (444)
T ss_pred CcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHHcCCCCcceEEeeccH
Confidence 9999999999999999999999999999999999999999 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCce-eEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh
Q psy12825 323 DSMRFRVLLAQKLGLSPESVH-GFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL 401 (488)
Q Consensus 323 ds~R~~~~lA~~Lgv~p~~V~-~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~ 401 (488)
|++|++++||+++|+++++|+ ++||||||++|||+||+++|+|+|+.+++... +..++++.+++++++++|++.
T Consensus 255 DsaR~r~~LA~~l~V~~~~V~~~~V~GeHGdsqvp~wS~a~V~G~pl~e~i~~~-----~~~~~ei~~~v~~~g~~Ii~~ 329 (444)
T PLN00112 255 DENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKINGLPVKEVITDH-----KWLEEEFTPKVQKRGGVLIKK 329 (444)
T ss_pred HHHHHHHHHHHHhCcCHHHcccceEEecCCCceeeccceeEECCccHHHhhccc-----cchHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999995 49999999999999999999999999875321 112578999999999999999
Q ss_pred cCCcch-hhHHHHHHHHHHHH--cCCCcEEEEEeeecC-cCCCCCceEEEEEEEEcCCceEEEe-ccCCCHHHHHHHHHH
Q psy12825 402 KGYTSW-ALGLSVASISHTLL--NNTNKIHAVSTLIQG-HHGIEEEVFLSLPCVMADNGVTHII-NQNLTPDEAEKLRKS 476 (488)
Q Consensus 402 kg~t~~-s~A~a~~~ii~aIl--~~~~~v~~vsv~~~G-~ygl~~d~~~svPv~igk~Gv~~i~-~l~L~~~E~~~L~~s 476 (488)
||+++| ++|.++++++.+|+ +|+++++|+|++.+| +||+++|+|||+||+++++|+++++ +++|+++|+++|++|
T Consensus 330 kG~t~~~s~a~ai~~~I~ail~~~d~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el~L~~~E~~~l~~S 409 (444)
T PLN00112 330 WGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDVEIDDYLRERIKKS 409 (444)
T ss_pred cCchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCCCCCHHHHHHHHHH
Confidence 998888 88999999999999 889999999999999 5999899999999999999999999 699999999999999
Q ss_pred HHHHHHHHH
Q psy12825 477 AATISQIQK 485 (488)
Q Consensus 477 a~~i~~~~~ 485 (488)
+++|.+..+
T Consensus 410 a~~L~~e~~ 418 (444)
T PLN00112 410 EAELLAEKR 418 (444)
T ss_pred HHHHHHHHH
Confidence 999986654
No 15
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=4.5e-61 Score=490.82 Aligned_cols=309 Identities=29% Similarity=0.518 Sum_probs=287.7
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCC-CCcEEEcCCccccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLR-SPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~-~~~v~~ttd~eal~dADiVIita 253 (488)
.+.+||+|||||.||+++++.++..++ .+|+|+|++++++++.++|+.|...+.. ..+|..++||++++||||||+++
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhCCCCEEEECC
Confidence 356799999999999999999999998 4699999999999999999999754332 45788778999999999999999
Q ss_pred ccccCCCc-----chHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHH
Q psy12825 254 GVRSLVGE-----TRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFR 328 (488)
Q Consensus 254 g~~~k~G~-----~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~ 328 (488)
+.++++|+ +|.+++..|++++++++++|+++||++|+|++|||+|++++++++++++|++||||+||.+|+.|++
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlgt~lds~R~~ 162 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMAGVLDSSRLR 162 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEecCcccHHHHH
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh--cCCcc
Q psy12825 329 VLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTS 406 (488)
Q Consensus 329 ~~lA~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~--kg~t~ 406 (488)
+.||+++++++++|+++|+||||++++|+||+++++|.|+.++.++ ..+++++++++.+++++++++|++. ||+++
T Consensus 163 ~~la~~l~v~~~~v~~~viGeHg~s~v~~~S~~~i~g~~~~~~~~~--~~~~~~~~~~i~~~~~~~g~~i~~~~gkg~t~ 240 (321)
T PTZ00082 163 TYIAEKLGVNPRDVHASVIGAHGDKMVPLPRYVTVGGIPLSEFIKK--GLITQEEIDEIVERTRNTGKEIVDLLGTGSAY 240 (321)
T ss_pred HHHHHHhCCCcccceeeEEecCCCceEecceeeEECCEEHHHhhhc--ccCCHHHHHHHHHHHHHHHHHHHhhcCCCccH
Confidence 9999999999999999999999999999999999999999987643 1245677899999999999999995 68999
Q ss_pred hhhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHh
Q psy12825 407 WALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKG 486 (488)
Q Consensus 407 ~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~ 486 (488)
||+|.++++++++|++|++.++|+|++.+|+||+ .|+|+|+||+||++|++++++++|+++|+++|++|++.|++.++-
T Consensus 241 ~~ia~a~~~i~~ail~d~~~v~~vs~~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~~~~l~~~E~~~l~~sa~~i~~~~~~ 319 (321)
T PTZ00082 241 FAPAAAAIEMAEAYLKDKKRVLPCSAYLEGQYGH-KDIYMGTPAVIGANGVEKIIELDLTPEEQKKFDESIKEVKRLEAL 319 (321)
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEEecccCCC-CCeEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999998 589999999999999999999999999999999999999988764
Q ss_pred h
Q psy12825 487 L 487 (488)
Q Consensus 487 ~ 487 (488)
+
T Consensus 320 ~ 320 (321)
T PTZ00082 320 L 320 (321)
T ss_pred h
Confidence 3
No 16
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=3.1e-61 Score=489.88 Aligned_cols=308 Identities=46% Similarity=0.804 Sum_probs=287.7
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRS 257 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~~ 257 (488)
|||+|||+|.+|.++++.|+.+++..+|+|+|++++++++.++|+.|...+..... ..++|++++++||+||++++.++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~-i~~~d~~~l~~aDiViita~~~~ 79 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVR-IYAGDYADCKGADVVVITAGANQ 79 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeE-EeeCCHHHhCCCCEEEEccCCCC
Confidence 58999999999999999999999888999999999999999999999864332333 34678999999999999999999
Q ss_pred CCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCC
Q psy12825 258 LVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGL 337 (488)
Q Consensus 258 k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv 337 (488)
++|++|.+++..|+++++++++.|++++|+++++++|||+|++++++++++|||++||||+||.||+.|++++||+++++
T Consensus 80 ~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~~~~v 159 (308)
T cd05292 80 KPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGV 159 (308)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHeecccchhhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHHHH
Q psy12825 338 SPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417 (488)
Q Consensus 338 ~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~ii 417 (488)
++.+|+++|||+||++++|+||+++++|+|+.++.+.....++++.++++.+++++++++|++.||+++|++|+++++++
T Consensus 160 ~~~~v~~~viGeHg~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~kg~t~~~~a~a~~~i~ 239 (308)
T cd05292 160 DPRSVHAYIIGEHGDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERKGATYYAIGLALARIV 239 (308)
T ss_pred CccceeceeeccCCCcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876432224556778999999999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 418 ~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++|++|++.++|+|++.+|+||+ .++|+|+||+||++|++++++++|+++|+++|++|++.|++.++.+
T Consensus 240 ~ail~~~~~v~~~s~~~~g~yg~-~~~~~s~P~~ig~~Gv~~i~~~~L~~~E~~~l~~s~~~i~~~~~~~ 308 (308)
T cd05292 240 EAILRDENSVLTVSSLLDGQYGI-KDVALSLPCIVGRSGVERVLPPPLSEEEEEALRASAEVLKEAIESL 308 (308)
T ss_pred HHHHcCCCcEEEEEEEEcccCCC-CCEEEEEEEEEeCCceEEecCCCCCHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999997 5899999999999999999999999999999999999999988754
No 17
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=8.3e-61 Score=485.91 Aligned_cols=301 Identities=32% Similarity=0.566 Sum_probs=282.0
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCC-CCCcEEEcCCccccCCCcEEEEecccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL-RSPKIESGSDIAMSEGSRIVIITAGVR 256 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~-~~~~v~~ttd~eal~dADiVIitag~~ 256 (488)
+||+|||+|.||.++|+.++..++. +|+|+|++++..++.+.|+.|..... ...++..++||+++++||+||+++|.|
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHhCCCCEEEEcCCCC
Confidence 6999999999999999999999886 79999999988888888888764322 245787788998899999999999999
Q ss_pred cCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhC
Q psy12825 257 SLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLG 336 (488)
Q Consensus 257 ~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lg 336 (488)
+++|++|.|++..|++++++++++|.+++|++++|++|||+|++++++++++|+|++||||+||.||++|+++.+|++|+
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~lds~R~~~~la~~l~ 160 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLDSARFRTFIAMELG 160 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh--cCCcchhhHHHHH
Q psy12825 337 LSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTSWALGLSVA 414 (488)
Q Consensus 337 v~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~--kg~t~~s~A~a~~ 414 (488)
++|++|+++||||||++++|+||+++++|+|+.++.. ++.++++.+++++++++|++. ||+++|++|++++
T Consensus 161 v~~~~v~~~v~GeHg~s~~~~wS~~~i~g~~~~~~~~-------~~~~~~l~~~v~~~g~~ii~~~~kg~t~~~~a~~~~ 233 (305)
T TIGR01763 161 VSVQDVTACVLGGHGDAMVPLVRYSTVAGIPVADLIS-------AERIAEIVERTRKGGGEIVNLLKQGSAYYAPAASVV 233 (305)
T ss_pred cCHHHeeeeEEecCCCcEEeeeeeeEECCEEHHHhcC-------HHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999988642 345789999999999999997 6799999999999
Q ss_pred HHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 415 SISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 415 ~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
+|+++|++|++.++|+|++.+|+||+ +|+|+|+||++|++|++++++++|+++|+++|++|++.|++.++++
T Consensus 234 ~i~~ai~~~~~~v~~~s~~~~~~yg~-~~v~~s~P~~ig~~Gv~~i~~~~l~~~E~~~l~~s~~~i~~~~~~~ 305 (305)
T TIGR01763 234 EMVEAILKDRKRVLPCAAYLDGQYGI-DGIYVGVPVILGKNGVEHIYELKLDQSELALLNKSAKIVDENCKML 305 (305)
T ss_pred HHHHHHhCCCCeEEEEEEEecccCCC-CceEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998 6999999999999999999999999999999999999999988764
No 18
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1e-60 Score=488.23 Aligned_cols=306 Identities=24% Similarity=0.318 Sum_probs=279.9
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCC-----eEEEEeCCh--hHHHHHHHHHhhcCC-CCCCCcEEEcCCccccCCCcE
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYS-----NFCLIDSNE--DRCKGEMLDLQHGAP-FLRSPKIESGSDIAMSEGSRI 248 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~-----el~L~Di~~--e~l~g~~~dL~~~~~-~~~~~~v~~ttd~eal~dADi 248 (488)
.||+|||| |.+|+++++.|+.+++++ +|+|+|+++ +.+++.++||.|... +.....+. +.++++++|||+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~-~~~~~~~~~aDi 79 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT-TDPEEAFKDVDV 79 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe-cChHHHhCCCCE
Confidence 38999999 999999999999999887 499999998 999999999999862 22223333 567899999999
Q ss_pred EEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCchhHHHHHHHhcC-CCCCcEEeecCChHHHH
Q psy12825 249 VIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPVDVLTYISWKLSG-FPKNRVIGSGTNLDSMR 326 (488)
Q Consensus 249 VIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPvdi~t~~~~k~sg-~p~~rViG~gt~lds~R 326 (488)
||+++|.|++||++|.|++..|+++++++++.|+++| |++++|++|||+|+||+++++.+| +|++||||+ |.||++|
T Consensus 80 VVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~vig~-t~LDs~R 158 (323)
T cd00704 80 AILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIALKNAPNLPPKNFTAL-TRLDHNR 158 (323)
T ss_pred EEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEe-eHHHHHH
Confidence 9999999999999999999999999999999999996 999999999999999999999999 599999999 9999999
Q ss_pred HHHHHHHHhCCCCCCce-eEEEeecCCCcccccccceecCccccccCCCCCCCCChH-HHHHHHHHHhhhHHHHHHhcCC
Q psy12825 327 FRVLLAQKLGLSPESVH-GFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTE-NFVRLHADVVNSAYEVIKLKGY 404 (488)
Q Consensus 327 ~~~~lA~~Lgv~p~~V~-~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~-~~~el~~~v~~~~~eIi~~kg~ 404 (488)
++++||++++++|++|+ ++||||||++++|+||+++++|.|+.++.+. .++++ ..+++.+++++++++|++.||+
T Consensus 159 ~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~~~~~~~~~---~~~~~~~~~~i~~~v~~~~~~Ii~~kg~ 235 (323)
T cd00704 159 AKAQVARKLGVRVSDVKNVIIWGNHSNTQVPDLSNAVVYGPGGTEWVLD---LLDEEWLNDEFVKTVQKRGAAIIKKRGA 235 (323)
T ss_pred HHHHHHHHhCcCHHHceeeeEEecccCceeeccccceecCccHHHhccc---ccChHHHHHHHHHHHHhhHHHHHhccCc
Confidence 99999999999999995 5899999999999999999999999887542 12332 2468999999999999999999
Q ss_pred cchh-hHHHHHHHHHHHHcCCC--cEEEEEeeecCcC-CCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHH
Q psy12825 405 TSWA-LGLSVASISHTLLNNTN--KIHAVSTLIQGHH-GIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATI 480 (488)
Q Consensus 405 t~~s-~A~a~~~ii~aIl~~~~--~v~~vsv~~~G~y-gl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i 480 (488)
++|+ +|+++++++++|++|++ +++|+|++++|+| |+|+|+|||+||+||++||+++.+++|+++|+++|++|++.|
T Consensus 236 t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~l~L~~~E~~~l~~s~~~l 315 (323)
T cd00704 236 SSAASAAKAIADHVKDWLFGTPPGEIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVEDLKLNDWLREKLKATEEEL 315 (323)
T ss_pred chhHHHHHHHHHHHHHHHhCCCCCcEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 9997 69999999999999998 9999999999999 998899999999999999999999999999999999999999
Q ss_pred HHHHHhhC
Q psy12825 481 SQIQKGLL 488 (488)
Q Consensus 481 ~~~~~~~~ 488 (488)
++..+.+|
T Consensus 316 ~~~~~~~~ 323 (323)
T cd00704 316 IEEKEIAL 323 (323)
T ss_pred HHHHHhhC
Confidence 99887654
No 19
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=4.5e-60 Score=483.30 Aligned_cols=303 Identities=19% Similarity=0.271 Sum_probs=278.8
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCC-----eEEEEeCCh--hHHHHHHHHHhhcCC-CCCCCcEEEcCCccccCCC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYS-----NFCLIDSNE--DRCKGEMLDLQHGAP-FLRSPKIESGSDIAMSEGS 246 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~-----el~L~Di~~--e~l~g~~~dL~~~~~-~~~~~~v~~ttd~eal~dA 246 (488)
+++||+|||| |.||+++++.|+.+++++ ||+|+|+++ +++++.++||+|+.. +....++. +.+|++++||
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~~~~~~~~da 79 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT-DDPNVAFKDA 79 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe-cCcHHHhCCC
Confidence 4689999999 999999999999999999 999999955 459999999999862 22223343 5678999999
Q ss_pred cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCchhHHHHHHHhc-CCCCCcEEeecCChHH
Q psy12825 247 RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPVDVLTYISWKLS-GFPKNRVIGSGTNLDS 324 (488)
Q Consensus 247 DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPvdi~t~~~~k~s-g~p~~rViG~gt~lds 324 (488)
|+||+++|.++++|++|.|++..|++++++++..|++++ |++++|++|||+|+||+++++.+ +||++||||+ |.||+
T Consensus 80 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~ViG~-t~LDs 158 (322)
T cd01338 80 DWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAM-TRLDH 158 (322)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHHHHcCCCChHheEEe-hHHHH
Confidence 999999999999999999999999999999999999999 59999999999999999999999 5999999999 99999
Q ss_pred HHHHHHHHHHhCCCCCCcee-EEEeecCCCcccccccceecCccccccCCCCCCCCChH--HHHHHHHHHhhhHHHHHHh
Q psy12825 325 MRFRVLLAQKLGLSPESVHG-FIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTE--NFVRLHADVVNSAYEVIKL 401 (488)
Q Consensus 325 ~R~~~~lA~~Lgv~p~~V~~-~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~--~~~el~~~v~~~~~eIi~~ 401 (488)
.|+++.+|+++|+++.+|++ +|||+||++++|+||+++++|+|+.++.. +. .++++.+++++++++|++.
T Consensus 159 ~Rl~~~la~~lgv~~~~v~~~~V~GeHG~s~vp~~S~~~v~g~pl~~~~~-------~~~~~~~~i~~~v~~~g~~Ii~~ 231 (322)
T cd01338 159 NRAKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATIGGKPAAEVIN-------DRAWLEDEFIPTVQKRGAAIIKA 231 (322)
T ss_pred HHHHHHHHHHhCcChhHeEEEEEEeCCcccEEEehhhcEECCEeHHHhcC-------hHhhHHHHHHHHHHhhHHHHHhC
Confidence 99999999999999999998 56999999999999999999999987642 22 2578999999999999999
Q ss_pred cCCcchhhH-HHHHHHHHHHHcCC--CcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHH
Q psy12825 402 KGYTSWALG-LSVASISHTLLNNT--NKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAA 478 (488)
Q Consensus 402 kg~t~~s~A-~a~~~ii~aIl~~~--~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~ 478 (488)
||+++|+++ +++++++++|++|+ +.++|+|++++|+||+|+|+|||+||++|++|++++++++|+++|+++|++|++
T Consensus 232 kG~t~~~~~a~a~~~iv~ail~~~~~~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~l~L~~~E~~~l~~s~~ 311 (322)
T cd01338 232 RGASSAASAANAAIDHMRDWVLGTPEGDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGLEIDDFAREKIDATLA 311 (322)
T ss_pred cCCccHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 999999999 59999999999998 599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q psy12825 479 TISQIQKGL 487 (488)
Q Consensus 479 ~i~~~~~~~ 487 (488)
.|++..+.+
T Consensus 312 ~l~~~~~~~ 320 (322)
T cd01338 312 ELLEEREAV 320 (322)
T ss_pred HHHHHHHHh
Confidence 999887654
No 20
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=6e-59 Score=472.27 Aligned_cols=303 Identities=33% Similarity=0.562 Sum_probs=283.9
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCC-CCCcEEEcCCccccCCCcEEEEeccc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL-RSPKIESGSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~-~~~~v~~ttd~eal~dADiVIitag~ 255 (488)
++||+|||+|.||+++++.++..++. +|+|+|++++++++..+|+.+..... ...+++.++|+++++|||+||++++.
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aDiVii~~~~ 80 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSDVVVITAGV 80 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCCEEEECCCC
Confidence 47999999999999999999999887 99999999999999999998864322 23577777889999999999999999
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHh
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKL 335 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~L 335 (488)
|+++|++|.+++.+|++++++++++|++++|++|+|++|||+|++|+++++++++|++||||+||.+|++|++++||+++
T Consensus 81 p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~gt~lds~r~~~~la~~l 160 (307)
T PRK06223 81 PRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMAGVLDSARFRTFIAEEL 160 (307)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeCCCcHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh--cCCcchhhHHHH
Q psy12825 336 GLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTSWALGLSV 413 (488)
Q Consensus 336 gv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~--kg~t~~s~A~a~ 413 (488)
+++|++|+++|+|+||++++|+||+++++|.|+.++. +++.++++.+.++.+++++++. |+++.|++|.++
T Consensus 161 ~v~~~~v~~~viGehg~s~~p~~S~~~v~g~~~~~~~-------~~~~~~~l~~~v~~~~~~ii~~~~kg~t~~~~A~~~ 233 (307)
T PRK06223 161 NVSVKDVTAFVLGGHGDSMVPLVRYSTVGGIPLEDLL-------SKEKLDEIVERTRKGGAEIVGLLKTGSAYYAPAASI 233 (307)
T ss_pred CcChhhCcccEEcCCCCcceEchhhCEECCEEHHHhC-------ChHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHH
Confidence 9999999999999999999999999999999998863 2445788999999999999996 899999999999
Q ss_pred HHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhhC
Q psy12825 414 ASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGLL 488 (488)
Q Consensus 414 ~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~~ 488 (488)
.+++++|+.+++.+++++++++|+||+ +|++||+||+++++|++++++++|+++|+++|++|+++|++.+++++
T Consensus 234 ~~ii~ail~~~~~~~~~~v~~~g~yg~-~~~~~s~P~~i~~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~~ 307 (307)
T PRK06223 234 AEMVEAILKDKKRVLPCSAYLEGEYGV-KDVYVGVPVKLGKNGVEKIIELELDDEEKAAFDKSVEAVKKLIEALK 307 (307)
T ss_pred HHHHHHHHcCCCcEEEEEEEecCcCCC-CCeEEEeEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999 79999999999999999999999999999999999999999988763
No 21
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=9.3e-59 Score=471.82 Aligned_cols=303 Identities=35% Similarity=0.578 Sum_probs=283.8
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCCh--hHHHHHHHHHhhcCCCCC-CCcEEEcCCccccCCCcEEEEec
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE--DRCKGEMLDLQHGAPFLR-SPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~--e~l~g~~~dL~~~~~~~~-~~~v~~ttd~eal~dADiVIita 253 (488)
+||+|+|| |.+|+++++.++..++.++|+|+|+++ +++++..+|+.|...... ..++..++|++++++||+||+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~l~~aDiViita 80 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDIVIITA 80 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHHhCCCCEEEEec
Confidence 69999998 999999999999999988999999966 889999999998754322 34676777899999999999999
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHH
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQ 333 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~ 333 (488)
|.|+++|++|.+++..|+++++++++.|.+++|++++|+++||+|++|+++++.+++|++||||+||.||+.|++++||+
T Consensus 81 g~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~~~~~g~~~~~viG~gt~LDs~R~~~~la~ 160 (309)
T cd05294 81 GVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKALKESGFDKNRVFGLGTHLDSLRFKVAIAK 160 (309)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHhcCCCHHHEeeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHH
Q psy12825 334 KLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSV 413 (488)
Q Consensus 334 ~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~ 413 (488)
++++++++|+++|+||||++++|+||+++++|.|+.++.. ++++.++++.+++++++++|++.||+++|++|.++
T Consensus 161 ~l~v~~~~v~~~viGeHg~s~~~~~S~~~i~g~~~~~~~~-----~~~~~~~~i~~~v~~~g~~i~~~kg~t~~~~a~~~ 235 (309)
T cd05294 161 HFNVHISEVHTRIIGEHGDSMVPLISSTSIGGIPIKRFPE-----YKDFDVEKIVETVKNAGQNIISLKGGSEYGPASAI 235 (309)
T ss_pred HHCcChHHeEEEEEecCCCceEeeeeecEECCEEHHHhhc-----ccHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 9999999999999999999999999999999999988743 12455788999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEeeecCcC-CCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHh
Q psy12825 414 ASISHTLLNNTNKIHAVSTLIQGHH-GIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKG 486 (488)
Q Consensus 414 ~~ii~aIl~~~~~v~~vsv~~~G~y-gl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~ 486 (488)
++++++|+++++.++|++++++|+| |++ |+++|+||+++++|++++++++|+++|+++|++|++.|++.++.
T Consensus 236 ~~ii~ail~~~~~v~~vsv~~~g~~~~~~-~~~~svP~~ig~~Gv~~i~~l~l~~~E~~~l~~s~~~i~~~~~~ 308 (309)
T cd05294 236 SNLVRTIANDERRILTVSTYLEGEIDGIR-DVCIGVPVKLGKNGIEEIVPIEMDDDEREAFRKSAEIVKKYTRE 308 (309)
T ss_pred HHHHHHHHCCCCeEEEEEEEECCccCCCC-CeEEEeEEEEcCCccEEEeCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999997 997 99999999999999999999999999999999999999998765
No 22
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=2.4e-58 Score=466.93 Aligned_cols=296 Identities=33% Similarity=0.603 Sum_probs=278.2
Q ss_pred EEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCC-CCCcEEEcCCccccCCCcEEEEecccccC
Q psy12825 180 ITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL-RSPKIESGSDIAMSEGSRIVIITAGVRSL 258 (488)
Q Consensus 180 IaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~-~~~~v~~ttd~eal~dADiVIitag~~~k 258 (488)
|+|||||.||.++++.++..++. +|+|+|++++++++..+|+.+..... ...++..++|+++++|||+||++++.|++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~dADiVIit~g~p~~ 79 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVVITAGIPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhCCCCEEEEecCCCCC
Confidence 68999999999999999999887 99999999999999999998865322 23577777889999999999999999999
Q ss_pred CCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCCC
Q psy12825 259 VGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLS 338 (488)
Q Consensus 259 ~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~ 338 (488)
+|++|.+++.+|++++++++++|+++||++++|++|||+|++++++++++++|++||||+||.+|++|++++||++|+++
T Consensus 80 ~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlgt~lds~r~~~~la~~l~v~ 159 (300)
T cd01339 80 PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVS 159 (300)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEecchHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhc--CCcchhhHHHHHHH
Q psy12825 339 PESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK--GYTSWALGLSVASI 416 (488)
Q Consensus 339 p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~k--g~t~~s~A~a~~~i 416 (488)
|++|+++|+|+||++++|+||+++++|.|+.++.. +++++++.++++.++++|++.| |+++|++|.++++|
T Consensus 160 ~~~v~~~v~G~hg~~~~~~~s~~~v~g~~~~~~~~-------~~~~~~~~~~v~~~~~~ii~~k~~g~t~~~~a~~~~~i 232 (300)
T cd01339 160 VKDVQAMVLGGHGDTMVPLPRYSTVGGIPLTELIT-------KEEIDEIVERTRNGGAEIVNLLKTGSAYYAPAAAIAEM 232 (300)
T ss_pred ccceEEEEEeCCCCcceecceecEECCEEHHHhcC-------hHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHH
Confidence 99999999999999999999999999999987642 3458899999999999999976 99999999999999
Q ss_pred HHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHH
Q psy12825 417 SHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQ 484 (488)
Q Consensus 417 i~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~ 484 (488)
+++|+.+++.++|+|++++|+||++ ++|||+||++|++|++++++++|+++|+++|++|++.|++.+
T Consensus 233 ~~ail~~~~~i~~~s~~~~g~yg~~-~~~~s~P~~ig~~G~~~~~~l~l~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd01339 233 VEAILKDKKRVLPCSAYLEGEYGIK-DIFVGVPVVLGKNGVEKIIELDLTDEEKEAFDKSVESVKELI 299 (300)
T ss_pred HHHHHcCCCcEEEEEEEeccccCCC-CeEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999997 899999999999999999999999999999999999999865
No 23
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.6e-58 Score=484.00 Aligned_cols=344 Identities=16% Similarity=0.189 Sum_probs=297.8
Q ss_pred cEEEEecch--------hHHHHH-HHHHhhhhHHHHHHHHHHHHhhhCCC-CCCCCceEEEEec-ccchHHHHHHHHHcC
Q psy12825 132 KITVVGAGQ--------VGMACT-YSILTQTMARDAVSTVDRLLSQVAPS-IESPDQKITVVGA-GQVGMACTYSILTQG 200 (488)
Q Consensus 132 ki~vvg~g~--------vg~~~a-~~~~~k~la~eivlid~~~~~e~~~~-~~~~~~KIaIIGA-G~vG~~ia~~La~~~ 200 (488)
.+.+.|... =|+++- .+=.|+.+++|+..++.....|++.. +..++.+|+|.|| |.+|+++.+.|+.+.
T Consensus 68 g~l~gg~~~f~e~~~~yyg~~s~m~~~~~~~i~~en~~~~~~~~~e~~~~~~~~~p~~V~vtgAag~i~Y~l~~~ia~G~ 147 (452)
T cd05295 68 GLLLGGCNEFLEYAESYYGITSSMMSEEMTVIAEENLETHIEVEKEEEELRSKINPLQVCITNASAPLCYHLIPSLASGE 147 (452)
T ss_pred ceEecChHHHHHHHHHHhCccccccHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCceEEEEecCcHHHHHHHHHHHhCCc
Confidence 555666554 233333 34478899999999997655555443 5557889999999 999999999999986
Q ss_pred CCC-----eEEEEeC--ChhHHHHHHHHHhhcCCCCCCCcEE-EcCCccccCCCcEEEEecccccCCCcchHhhHhhhHH
Q psy12825 201 IYS-----NFCLIDS--NEDRCKGEMLDLQHGAPFLRSPKIE-SGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVK 272 (488)
Q Consensus 201 l~~-----el~L~Di--~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~eal~dADiVIitag~~~k~G~~r~dll~~N~~ 272 (488)
+++ .|+|+|+ ++++++|.++||+|++. +....+. .+++|++|+|||+||+++|.|+++|++|.|++..|++
T Consensus 148 ~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~-pll~~v~i~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~ 226 (452)
T cd05295 148 VFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAF-PLLRGISVTTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVA 226 (452)
T ss_pred ccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHH-hhcCCcEEEECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHH
Confidence 543 6999999 79999999999999872 2222232 3567899999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCC--CcEEEEEeCCchhHHHHHHHhc-CCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCce-eEEEe
Q psy12825 273 IFKDLIPKIAKGSP--DCILLIISNPVDVLTYISWKLS-GFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVH-GFIIG 348 (488)
Q Consensus 273 ii~ei~~~I~~~~p--~a~vIv~TNPvdi~t~~~~k~s-g~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~-~~V~G 348 (488)
|++++++.|++++| ++++|++|||+|++|+++++.+ +||++||+|+|| +|++|++++||+++|+++++|+ ++|||
T Consensus 227 Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~~k~apgiP~~rVig~gt-lds~R~r~~LA~kl~V~~~~V~~~~VwG 305 (452)
T cd05295 227 ICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIKYAPSIPRKNIIAVAR-LQENRAKALLARKLNVNSAGIKDVIVWG 305 (452)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEecc-hHHHHHHHHHHHHhCcCHHHceeeEEEE
Confidence 99999999999999 8999999999999999999999 999999999987 6799999999999999999995 69999
Q ss_pred ecCCCcccccccceecC------------ccccccCCCCCCCCChHHH--HHHHHHHhhhHHHHHHhcCCcchhhHHHHH
Q psy12825 349 EHGDSSVPVWSGVNVAG------------VTLKELNPTIGTEQDTENF--VRLHADVVNSAYEVIKLKGYTSWALGLSVA 414 (488)
Q Consensus 349 ~HG~~~vp~~S~a~v~g------------~pl~e~~~~~~~~~~~~~~--~el~~~v~~~~~eIi~~kg~t~~s~A~a~~ 414 (488)
|||+++||+||+++|+| +|+.+++. +++| +++.+.+++++. .+||++.||+|.+++
T Consensus 306 eHG~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~-------d~~w~~~~~~~~v~~rg~---~rkgsT~~siA~A~~ 375 (452)
T cd05295 306 NIGGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVH-------DSKWINGEFVATLKSLSS---SLNHEAAISPAHAIA 375 (452)
T ss_pred ccCCceeeeeeEEEEcccccccccccccCccHHHHhc-------chhhhHHHHHHHHHHHHH---hccCChHHHHHHHHH
Confidence 99999999999999987 88877642 2232 567888888887 678999999999999
Q ss_pred HHHHHHHcCC--CcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 415 SISHTLLNNT--NKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 415 ~ii~aIl~~~--~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
+++++|++|+ ++++|+|++++|+||+|+|++||+||+++++|++.+..++|+++|+++|++|+++|.+..+.+
T Consensus 376 ~iv~ail~~t~~~~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~~L~L~e~E~~kL~~S~~eL~~E~~~~ 450 (452)
T cd05295 376 TTLSYWYHGSPPGEIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVTDLELSEILREVLKRITSDLIQEKLVA 450 (452)
T ss_pred HHHHHHHhCCCCCeEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999996 699999999999999999999999999999999999999999999999999999999876544
No 24
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=1.7e-58 Score=472.01 Aligned_cols=304 Identities=18% Similarity=0.242 Sum_probs=271.9
Q ss_pred eEEEEec-ccchHHHHHHHHHcCCCC-----eEEEEeCChh--HHHHHHHHHhhcCCCCCCCcEEEc-CCccccCCCcEE
Q psy12825 179 KITVVGA-GQVGMACTYSILTQGIYS-----NFCLIDSNED--RCKGEMLDLQHGAPFLRSPKIESG-SDIAMSEGSRIV 249 (488)
Q Consensus 179 KIaIIGA-G~vG~~ia~~La~~~l~~-----el~L~Di~~e--~l~g~~~dL~~~~~~~~~~~v~~t-td~eal~dADiV 249 (488)
||+|||| |.||+++++.|+.+++.+ +|+|+|++++ ++++.++||.|..... ...++.+ .+|++++|||+|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~-~~~~~~~~~~~~~~~~aDiV 79 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPL-LDGVVPTHDPAVAFTDVDVA 79 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchh-cCceeccCChHHHhCCCCEE
Confidence 6999999 999999999999988875 6999999654 5899999999987322 2345544 348999999999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHH
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFR 328 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~ 328 (488)
|+++|.++++|++|.+++..|+++++++++.|.+++ |++++|++|||+|+||++++++++++|+++||+||.||++|++
T Consensus 80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~sg~~~~~vig~gt~LDs~R~r 159 (324)
T TIGR01758 80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRAL 159 (324)
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCcceEEEeeehHHHHHH
Confidence 999999999999999999999999999999999995 9999999999999999999999987778899999999999999
Q ss_pred HHHHHHhCCCCCCce-eEEEeecCCCcccccccceec-C---ccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcC
Q psy12825 329 VLLAQKLGLSPESVH-GFIIGEHGDSSVPVWSGVNVA-G---VTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKG 403 (488)
Q Consensus 329 ~~lA~~Lgv~p~~V~-~~V~G~HG~~~vp~~S~a~v~-g---~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg 403 (488)
++||++++++|++|+ ++||||||++++|+||+++++ | +|+.++... +...++++.+++++++++|++.||
T Consensus 160 ~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~~g~~~~pl~~~~~~-----~~~~~~~i~~~v~~~g~~Ii~~k~ 234 (324)
T TIGR01758 160 AQVAERAGVPVSDVKNVIIWGNHSSTQYPDVNHATVTKGGKQKPVREAIKD-----DAYLDGEFITTVQQRGAAIIRARK 234 (324)
T ss_pred HHHHHHhCCChhhceEeEEEECCCCCcccccccceecCCCCccCHHHHhcc-----hhhHHHHHHHHHHhCHHHHHhccC
Confidence 999999999999997 599999999999999999999 9 999887532 011257899999999999999765
Q ss_pred -CcchhhHHHHHHHHHHHH--cCCCcEEEEEeeecCc-CCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHH
Q psy12825 404 -YTSWALGLSVASISHTLL--NNTNKIHAVSTLIQGH-HGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAAT 479 (488)
Q Consensus 404 -~t~~s~A~a~~~ii~aIl--~~~~~v~~vsv~~~G~-ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~ 479 (488)
++.|++|.++++++++|+ .++++++|+|++.+|+ ||+|.|+|||+||+++++|+..+.+++|+++|+++|++|++.
T Consensus 235 ~~t~~~ia~~~~~i~~ai~~~~~~~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el~L~~~E~~~l~~s~~~ 314 (324)
T TIGR01758 235 LSSALSAAKAAVDQMHDWVLGTPEGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGLCVDDSSRKKLALTAKE 314 (324)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999 7889999999999999 999889999999999955555555599999999999999999
Q ss_pred HHHHHHhhC
Q psy12825 480 ISQIQKGLL 488 (488)
Q Consensus 480 i~~~~~~~~ 488 (488)
|++.++.+|
T Consensus 315 lk~~~~~~~ 323 (324)
T TIGR01758 315 LEEERDEAL 323 (324)
T ss_pred HHHHHHHhh
Confidence 999887764
No 25
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=4.8e-58 Score=465.85 Aligned_cols=287 Identities=25% Similarity=0.380 Sum_probs=261.6
Q ss_pred eEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cC-C--ccccCCCcEEEEec
Q psy12825 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GS-D--IAMSEGSRIVIITA 253 (488)
Q Consensus 179 KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-tt-d--~eal~dADiVIita 253 (488)
||+|||| |.||+++|+.|+.+++.+||+|+|+++ ++|.++||+|.. ...++.. ++ + |++++|||+||+++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~DL~~~~---~~~~i~~~~~~~~~~~~~~daDivvita 75 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAADLSHIP---TAASVKGFSGEEGLENALKGADVVVIPA 75 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEchhhcCC---cCceEEEecCCCchHHHcCCCCEEEEeC
Confidence 7999999 999999999999999999999999987 779999999975 2346665 32 3 79999999999999
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh----HHHHHHHhcCCCCCcEEeecCChHHHHHHH
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV----LTYISWKLSGFPKNRVIGSGTNLDSMRFRV 329 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi----~t~~~~k~sg~p~~rViG~gt~lds~R~~~ 329 (488)
|.++++|++|+|++..|++++++++++|.+++|++++|++|||+|+ +++++++.+|||++||||+|+ ||++|+++
T Consensus 76 G~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~-LDsaR~r~ 154 (312)
T TIGR01772 76 GVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTT-LDIVRANT 154 (312)
T ss_pred CCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeec-chHHHHHH
Confidence 9999999999999999999999999999999999999999999998 899999999999999999965 99999999
Q ss_pred HHHHHhCCCCCCceeEEEeecCC-CcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh---cCCc
Q psy12825 330 LLAQKLGLSPESVHGFIIGEHGD-SSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL---KGYT 405 (488)
Q Consensus 330 ~lA~~Lgv~p~~V~~~V~G~HG~-~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~---kg~t 405 (488)
+||++++++|++|+++||||||+ +++|+||++++ .+. +++++++++.+++++++++|++. ||++
T Consensus 155 ~la~~l~v~~~~v~~~ViGeHg~~s~vp~~S~~~~--~~~----------~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t 222 (312)
T TIGR01772 155 FVAELKGKDPMEVNVPVIGGHSGETIIPLISQCPG--KVL----------FTEDQLEALIHRIQNAGTEVVKAKAGAGSA 222 (312)
T ss_pred HHHHHhCCCHHHeEEEEEEecCCCccccccccccc--cCC----------CCHHHHHHHHHHHHHHHHHHHhCccCCCCh
Confidence 99999999999999999999987 99999999973 221 23455889999999999999996 5899
Q ss_pred chhhHHHHHHHHHHHH---cCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEecc-CCCHHHHHHHHHHHHHHH
Q psy12825 406 SWALGLSVASISHTLL---NNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQ-NLTPDEAEKLRKSAATIS 481 (488)
Q Consensus 406 ~~s~A~a~~~ii~aIl---~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l-~L~~~E~~~L~~sa~~i~ 481 (488)
+||+|.++++++++|+ .|++.++|+ ++++|+||. +|+|||+||++|++|+++++++ +|+++|+++|++|++.|+
T Consensus 223 ~~~ia~a~~~iv~ail~~~~d~~~v~~~-s~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~ 300 (312)
T TIGR01772 223 TLSMAFAGARFVLSLVRGLKGEEGVVEC-AYVESDGVT-EATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELK 300 (312)
T ss_pred hHHHHHHHHHHHHHHHHhhCCCccEEEE-EEEccCCCc-CceEEEEEEEEcCCeeEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999 478899994 588999985 6999999999999999999999 999999999999999999
Q ss_pred HHHH
Q psy12825 482 QIQK 485 (488)
Q Consensus 482 ~~~~ 485 (488)
+.++
T Consensus 301 ~~~~ 304 (312)
T TIGR01772 301 KNIK 304 (312)
T ss_pred HHHH
Confidence 7664
No 26
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=8e-58 Score=463.59 Aligned_cols=287 Identities=26% Similarity=0.384 Sum_probs=259.7
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc-C-C--ccccCCCcEEEEe
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG-S-D--IAMSEGSRIVIIT 252 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t-t-d--~eal~dADiVIit 252 (488)
+||+|||| |.||+++|+.|+.+++.+||+|+|++ +++|.++||+|+.. ..++..+ + | |++++|||+||++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~---~~~i~~~~~~~~~y~~~~daDivvit 75 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINT---PAKVTGYLGPEELKKALKGADVVVIP 75 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCC---cceEEEecCCCchHHhcCCCCEEEEe
Confidence 59999999 99999999999999999999999999 88999999999862 3466643 3 3 7999999999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhH----HHHHHHhcCCCCCcEEeecCChHHHHHH
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVL----TYISWKLSGFPKNRVIGSGTNLDSMRFR 328 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~----t~~~~k~sg~p~~rViG~gt~lds~R~~ 328 (488)
+|.|++||++|.|++..|+++++++++.|.+++|++|+|++|||+|+| ++++++.+++|++||||+| .||++|++
T Consensus 76 aG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~-~LDs~R~~ 154 (310)
T cd01337 76 AGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVT-TLDVVRAN 154 (310)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeee-chHHHHHH
Confidence 999999999999999999999999999999999999999999999987 8899999999999999995 69999999
Q ss_pred HHHHHHhCCCCCCceeEEEeec-CCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh---cCC
Q psy12825 329 VLLAQKLGLSPESVHGFIIGEH-GDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL---KGY 404 (488)
Q Consensus 329 ~~lA~~Lgv~p~~V~~~V~G~H-G~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~---kg~ 404 (488)
+++|+++|++|++|+++||||| |++++|+||++.+ +.+ ++++.++++.+++++++++|++. ||+
T Consensus 155 ~~la~~l~v~~~~V~~~v~GeHsGds~vp~~S~~~~----~~~--------~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~ 222 (310)
T cd01337 155 TFVAELLGLDPAKVNVPVIGGHSGVTILPLLSQCQP----PFT--------FDQEEIEALTHRIQFGGDEVVKAKAGAGS 222 (310)
T ss_pred HHHHHHhCcCHHHEEEEEEecCCCCceecccccccc----ccc--------CCHHHHHHHHHHHHHHHHHHHhCccCCCC
Confidence 9999999999999999999999 8999999999964 221 23455889999999999999997 489
Q ss_pred cchhhHHHHHHHHHHHHcC---CCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEecc-CCCHHHHHHHHHHHHHH
Q psy12825 405 TSWALGLSVASISHTLLNN---TNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQ-NLTPDEAEKLRKSAATI 480 (488)
Q Consensus 405 t~~s~A~a~~~ii~aIl~~---~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l-~L~~~E~~~L~~sa~~i 480 (488)
++||+|.++++++++|++| ++.+++++ +.+|+ |. +|+|+|+||++|++|+++++++ +|+++|+++|++|++.|
T Consensus 223 t~~~~a~a~~~iv~aIl~~~~~~~~~~~~s-~~~~~-g~-~~v~~s~P~~ig~~Gv~~i~~l~~L~~~E~~~l~~S~~~i 299 (310)
T cd01337 223 ATLSMAYAGARFANSLLRGLKGEKGVIECA-YVESD-VT-EAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPEL 299 (310)
T ss_pred cchhHHHHHHHHHHHHHHhcCCCcceEEEE-EEecc-CC-CceEEEEEEEEeCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999955 55677777 77775 64 5899999999999999999999 69999999999999999
Q ss_pred HHHHH
Q psy12825 481 SQIQK 485 (488)
Q Consensus 481 ~~~~~ 485 (488)
++.++
T Consensus 300 ~~~~~ 304 (310)
T cd01337 300 KKNIE 304 (310)
T ss_pred HHHHh
Confidence 97654
No 27
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=2.7e-57 Score=459.57 Aligned_cols=278 Identities=18% Similarity=0.246 Sum_probs=255.4
Q ss_pred eEEEEeCCh--hHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHH
Q psy12825 204 NFCLIDSNE--DRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPK 280 (488)
Q Consensus 204 el~L~Di~~--e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~ 280 (488)
.|+|+|+++ +++++.++||.|++... ...+..++| |++++|||+||+++|.++++|++|.|++..|+++++++++.
T Consensus 15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~-~~~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~~~ 93 (309)
T PLN00135 15 ILHMLDIPPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASA 93 (309)
T ss_pred EEEEecCcccccchhhHHHHHHhhhHHh-cCCcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 799999999 99999999999987311 225555566 89999999999999999999999999999999999999999
Q ss_pred Hhcc-CCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCc-eeEEEeecCCCccccc
Q psy12825 281 IAKG-SPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV-HGFIIGEHGDSSVPVW 358 (488)
Q Consensus 281 I~~~-~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V-~~~V~G~HG~~~vp~~ 358 (488)
|.++ +|++++|++|||+|+||+++++.+++|++|+||+||.||++|++++||++++++|++| +++||||||++++|+|
T Consensus 94 i~~~~~p~aivivvsNPvDv~t~~~~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~s~v~~~ 173 (309)
T PLN00135 94 LEKHAAPDCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSSTQYPDV 173 (309)
T ss_pred HHHhcCCCeEEEEeCCcHHHHHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCCceeecc
Confidence 9996 8999999999999999999999999999999999999999999999999999999999 6899999999999999
Q ss_pred cccee----cCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh-cCCcchhhHHHHHHHHHHHHc--CCCcEEEEE
Q psy12825 359 SGVNV----AGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL-KGYTSWALGLSVASISHTLLN--NTNKIHAVS 431 (488)
Q Consensus 359 S~a~v----~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~-kg~t~~s~A~a~~~ii~aIl~--~~~~v~~vs 431 (488)
|++++ +|+|+.++... ++..++++.+++++++++|++. ||+++||+|.++++++++|++ +++.++|+|
T Consensus 174 S~a~v~~~~~g~p~~e~~~~-----~~~~~~~i~~~v~~~g~~Ii~~~kg~t~~~ia~a~~~iv~ai~~~~~~~~v~~vs 248 (309)
T PLN00135 174 NHATVKTPSGEKPVRELVAD-----DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMG 248 (309)
T ss_pred ccceEecCCCCcCHHHHhCc-----hhhHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHhCCcCCeEEEEE
Confidence 99999 99999887421 0112578999999999999997 789999999999999999998 679999999
Q ss_pred eeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 432 TLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 432 v~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++.+|+||+|+|+|||+||+++++|++.+.+++|+++|+++|++|+++|++..+.+
T Consensus 249 v~~~g~YGi~~~v~~s~P~vlg~~gve~v~~l~L~~~E~~~l~~S~~~lk~~~~~~ 304 (309)
T PLN00135 249 VYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGLSIDEFSRKKMDATAKELKEEKELA 304 (309)
T ss_pred EEecCccCCcCCeEEEEEEEEECCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988999999999999999999899999999999999999999776543
No 28
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.1e-56 Score=459.27 Aligned_cols=306 Identities=21% Similarity=0.273 Sum_probs=275.6
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCC-----eEEEEeCCh--hHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccCCC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYS-----NFCLIDSNE--DRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSEGS 246 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~-----el~L~Di~~--e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dA 246 (488)
++.||+|+|| |.+|+++++.|+.+++.+ +|+|+|+++ +.+++.++|+.|+.... ...+..+++ +++++||
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~-~~~~~~~~~~~~~l~~a 79 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPL-LKSVVATTDPEEAFKDV 79 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccc-cCCceecCCHHHHhCCC
Confidence 4689999999 999999999999988764 999999955 55788899999976311 224554566 5899999
Q ss_pred cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCchhHHHHHHHhc-CCCCCcEEeecCChHH
Q psy12825 247 RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPVDVLTYISWKLS-GFPKNRVIGSGTNLDS 324 (488)
Q Consensus 247 DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPvdi~t~~~~k~s-g~p~~rViG~gt~lds 324 (488)
|+||+++|.+++++++|.+++..|+++++++++.|++++ |++++|++|||+|+||+++++.+ ++|+++ ||+||.||+
T Consensus 80 DiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~~~~~~~~~-ig~gt~LDs 158 (325)
T cd01336 80 DVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPKEN-FTALTRLDH 158 (325)
T ss_pred CEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHHHcCCCCHHH-EEeeehHHH
Confidence 999999999999999999999999999999999999996 79999999999999999999995 777777 999999999
Q ss_pred HHHHHHHHHHhCCCCCCcee-EEEeecCCCcccccccceec----CccccccCCCCCCCCChHHHHHHHHHHhhhHHHHH
Q psy12825 325 MRFRVLLAQKLGLSPESVHG-FIIGEHGDSSVPVWSGVNVA----GVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVI 399 (488)
Q Consensus 325 ~R~~~~lA~~Lgv~p~~V~~-~V~G~HG~~~vp~~S~a~v~----g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi 399 (488)
.|+++++|++++++|.+|+. +||||||++++|+||+++++ |+|+.++... +...++++.+++++++++|+
T Consensus 159 ~R~r~~la~~l~v~~~~v~~~~V~GeHG~s~~~~~S~~~v~~~~~g~~~~~~~~~-----~~~~~~~i~~~v~~~g~~Ii 233 (325)
T cd01336 159 NRAKSQIALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVELNGKGKPAREAVKD-----DAWLNGEFISTVQKRGAAVI 233 (325)
T ss_pred HHHHHHHHHHhCcChhhceEeEEEEcCCCCeeeccccceeecCCCCccHHHHhcc-----cchhHHHHHHHHHhhHHHHH
Confidence 99999999999999999975 69999999999999999999 9999887532 01125789999999999999
Q ss_pred Hh-cCCcchhhHHHHHHHHHHHHcC--CCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHH
Q psy12825 400 KL-KGYTSWALGLSVASISHTLLNN--TNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKS 476 (488)
Q Consensus 400 ~~-kg~t~~s~A~a~~~ii~aIl~~--~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~s 476 (488)
+. +|++.|++|.++++++++|++| ++.++|+|++.+|+||+|+|+|||+||++|++|+.++.+++|+++|+++|++|
T Consensus 234 ~~~~g~t~~~~a~~~~~i~~ail~~~~~~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~~~L~~~E~~~l~~s 313 (325)
T cd01336 234 KARKLSSAMSAAKAICDHVHDWWFGTPEGEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGLSIDDFSREKIDAT 313 (325)
T ss_pred HccccchHHHHHHHHHHHHHHHHcCCCCCeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecCCCCCHHHHHHHHHH
Confidence 96 6799999999999999999998 48999999999999999889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q psy12825 477 AATISQIQKGLL 488 (488)
Q Consensus 477 a~~i~~~~~~~~ 488 (488)
++.|++.++.+|
T Consensus 314 ~~~l~~e~~~~~ 325 (325)
T cd01336 314 AKELVEEKETAL 325 (325)
T ss_pred HHHHHHHHHhhC
Confidence 999999988765
No 29
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-55 Score=446.47 Aligned_cols=291 Identities=27% Similarity=0.389 Sum_probs=265.4
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC----ccccCCCc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD----IAMSEGSR 247 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd----~eal~dAD 247 (488)
+..++.||+|||| |.||+++++.|+..++.++|+|+|+ +.+++.++||+|... ...+...+| +++++|||
T Consensus 4 ~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di--~~~~g~a~Dl~~~~~---~~~v~~~td~~~~~~~l~gaD 78 (321)
T PTZ00325 4 SALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI--VGAPGVAADLSHIDT---PAKVTGYADGELWEKALRGAD 78 (321)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec--CCCcccccchhhcCc---CceEEEecCCCchHHHhCCCC
Confidence 4557789999999 9999999999998899999999999 567888999999753 345554444 78999999
Q ss_pred EEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHH----HhcCCCCCcEEeecCChH
Q psy12825 248 IVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISW----KLSGFPKNRVIGSGTNLD 323 (488)
Q Consensus 248 iVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~----k~sg~p~~rViG~gt~ld 323 (488)
+||+++|.+++++++|.+++..|+++++++++.|.+++|+++++++|||+|+++++++ +.+++||+||||+|+ ||
T Consensus 79 vVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~-LD 157 (321)
T PTZ00325 79 LVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTT-LD 157 (321)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechh-HH
Confidence 9999999999999999999999999999999999999999999999999999999995 889999999999975 99
Q ss_pred HHHHHHHHHHHhCCCCCCceeEEEeecCC-CcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhc
Q psy12825 324 SMRFRVLLAQKLGLSPESVHGFIIGEHGD-SSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK 402 (488)
Q Consensus 324 s~R~~~~lA~~Lgv~p~~V~~~V~G~HG~-~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~k 402 (488)
++|++++||+++|++|++|+++||||||+ +++|+||++ |.|+ ++++++++.+++++++++|++.|
T Consensus 158 s~R~r~~la~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~---g~~l-----------~~~~~~~i~~~v~~~g~~Ii~~k 223 (321)
T PTZ00325 158 VVRARKFVAEALGMNPYDVNVPVVGGHSGVTIVPLLSQT---GLSL-----------PEEQVEQITHRVQVGGDEVVKAK 223 (321)
T ss_pred HHHHHHHHHHHhCcChhheEEEEEeecCCcccccchhcc---CCCC-----------CHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999 899999998 6664 24568899999999999999976
Q ss_pred ---CCcchhhHHHHHHHHHHHHcC---CCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEec-cCCCHHHHHHHHH
Q psy12825 403 ---GYTSWALGLSVASISHTLLNN---TNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIIN-QNLTPDEAEKLRK 475 (488)
Q Consensus 403 ---g~t~~s~A~a~~~ii~aIl~~---~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~-l~L~~~E~~~L~~ 475 (488)
|+++||+|+++++++++|++| ++.+++++ +.+|+||. .|+|+|+||++|++|++++++ ++|+++|+++|++
T Consensus 224 ~~kg~t~~g~a~a~~~i~~ail~~~~~~~~v~~~~-~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~ 301 (321)
T PTZ00325 224 EGAGSATLSMAYAAAEWSTSVLKALRGDKGIVECA-FVESDMRP-ECPFFSSPVELGKEGVERVLPIGPLNAYEEELLEA 301 (321)
T ss_pred cCCCCchHHHHHHHHHHHHHHHhhcCCCCCeEEEE-EEecCCCC-CCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHH
Confidence 799999999999999999965 78899885 88999996 599999999999999999999 8999999999999
Q ss_pred HHHHHHHHHH
Q psy12825 476 SAATISQIQK 485 (488)
Q Consensus 476 sa~~i~~~~~ 485 (488)
|++.|++.++
T Consensus 302 S~~~i~~~~~ 311 (321)
T PTZ00325 302 AVPDLKKNIE 311 (321)
T ss_pred HHHHHHHHHH
Confidence 9999997664
No 30
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=5.9e-55 Score=443.43 Aligned_cols=277 Identities=18% Similarity=0.266 Sum_probs=249.2
Q ss_pred eEEEEeCCh--hHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHH
Q psy12825 204 NFCLIDSNE--DRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPK 280 (488)
Q Consensus 204 el~L~Di~~--e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~ 280 (488)
.|+|+|+++ ++++|.++||.|+. ++.......++|+ ++++|||+||+++|.|+++|++|.|++..|+++++++++.
T Consensus 17 ~l~L~D~~~~~~~a~g~a~Dl~d~~-~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~~ 95 (313)
T TIGR01756 17 CLHLLEIPPALNRLEALAMELEDCA-FPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEA 95 (313)
T ss_pred EEEEecCCCccchhHhHHHHHHHhc-cccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 799999988 99999999999997 4433233446677 6999999999999999999999999999999999999999
Q ss_pred HhccCCC-cEEEEEeCCchhHHHHH-HHhcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeE-EEeecCCCcccc
Q psy12825 281 IAKGSPD-CILLIISNPVDVLTYIS-WKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGF-IIGEHGDSSVPV 357 (488)
Q Consensus 281 I~~~~p~-a~vIv~TNPvdi~t~~~-~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~-V~G~HG~~~vp~ 357 (488)
|++++|+ +++|++|||+|+||+++ ++.+|||++ +||+||.||++|++++||++++++|++|+.+ ||||||++++|+
T Consensus 96 i~~~a~~~~ivivvtNPvDv~t~v~~~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeHG~s~vp~ 174 (313)
T TIGR01756 96 LSEYAKPTVKVLVIGNPVNTNCLVAMLHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAESMVAD 174 (313)
T ss_pred HHhhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECCCCceeec
Confidence 9999955 88999999999999999 699999998 9999999999999999999999999999765 999999999999
Q ss_pred ccccee--cCccccccCCCCCCCCChH-HHHHHHHHHhhhHHHHHHhcCCcchhhH-HHHHHHHHHHHc--CCCcEEEEE
Q psy12825 358 WSGVNV--AGVTLKELNPTIGTEQDTE-NFVRLHADVVNSAYEVIKLKGYTSWALG-LSVASISHTLLN--NTNKIHAVS 431 (488)
Q Consensus 358 ~S~a~v--~g~pl~e~~~~~~~~~~~~-~~~el~~~v~~~~~eIi~~kg~t~~s~A-~a~~~ii~aIl~--~~~~v~~vs 431 (488)
||++++ +|.|+..+ .. ++++ .++++.+++++++++|++.||+++|+++ .++++++++|++ ++++++|+|
T Consensus 175 ~S~~~V~~~G~~~~~~-~~----~~~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~~a~ai~~iv~ail~~~~~~~i~pvs 249 (313)
T TIGR01756 175 LTHAEFTKNGKHQKVF-DE----LCRDYPEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKAWLFGTRPGEVLSMG 249 (313)
T ss_pred ccccEEecCCeehhHh-hh----cCcHhHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 999999 99886554 11 1221 3578999999999999999999999987 699999999999 567999999
Q ss_pred eeec--CcCCCCCceEEEEEEEEcCCceEEEec-cCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 432 TLIQ--GHHGIEEEVFLSLPCVMADNGVTHIIN-QNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 432 v~~~--G~ygl~~d~~~svPv~igk~Gv~~i~~-l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++.+ |+||+|+|+++|+||++|++|++++++ ++|+++|+++|++|+++|++..+.+
T Consensus 250 v~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l~L~~~E~~~l~~Sa~~l~~e~~~~ 308 (313)
T TIGR01756 250 IPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENFELNPWLKTKLAQTEKDLFEERETA 308 (313)
T ss_pred EEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9985 399998899999999999999999999 9999999999999999999776543
No 31
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=5.7e-54 Score=437.70 Aligned_cols=290 Identities=24% Similarity=0.362 Sum_probs=260.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCC---ccccCCCcEE
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSD---IAMSEGSRIV 249 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd---~eal~dADiV 249 (488)
-++.||+|||| |.||+++++.|+.+++.+||+|+|+++ +++.++||.|+.. ...+.. +++ +++++|||+|
T Consensus 16 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~~~---~~~i~~~~~~~d~~~~l~~aDiV 90 (323)
T PLN00106 16 APGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHINT---PAQVRGFLGDDQLGDALKGADLV 90 (323)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhCCc---CceEEEEeCCCCHHHHcCCCCEE
Confidence 34579999999 999999999999999999999999988 7888999999864 224432 233 5899999999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch----hHHHHHHHhcCCCCCcEEeecCChHHH
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD----VLTYISWKLSGFPKNRVIGSGTNLDSM 325 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd----i~t~~~~k~sg~p~~rViG~gt~lds~ 325 (488)
|+++|.+++||++|.|++..|+++++++++.+.+++|+++++++|||+| ++++++++.+++||+||||++ .||++
T Consensus 91 VitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~-~LDs~ 169 (323)
T PLN00106 91 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVT-TLDVV 169 (323)
T ss_pred EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEe-cchHH
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999996 59999
Q ss_pred HHHHHHHHHhCCCCCCceeEEEeecCC-CcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh---
Q psy12825 326 RFRVLLAQKLGLSPESVHGFIIGEHGD-SSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--- 401 (488)
Q Consensus 326 R~~~~lA~~Lgv~p~~V~~~V~G~HG~-~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~--- 401 (488)
|+++++|+++|+++.+|+++|+|+||+ +|+|+||++.+ ..+ +++++++++.+++++++++|++.
T Consensus 170 Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~----~~~--------~~~~~~~~i~~~v~~~g~~Ii~~k~~ 237 (323)
T PLN00106 170 RANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATP----KVS--------FTDEEIEALTKRIQNGGTEVVEAKAG 237 (323)
T ss_pred HHHHHHHHHhCCChhheEEEEEEeCCCccEeeehhccee----ccc--------CCHHHHHHHHHHHHHHHHHHHhCccC
Confidence 999999999999999999999999965 99999999954 211 23556889999999999999997
Q ss_pred cCCcchhhHHHHHHHHHHHHcC---CCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEecc-CCCHHHHHHHHHHH
Q psy12825 402 KGYTSWALGLSVASISHTLLNN---TNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQ-NLTPDEAEKLRKSA 477 (488)
Q Consensus 402 kg~t~~s~A~a~~~ii~aIl~~---~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l-~L~~~E~~~L~~sa 477 (488)
||+++||+|.++++++++|+++ ++.++|++ +.+|+| .+++|||+||+||++|+++++++ +|+++|+++|++|+
T Consensus 238 kg~t~~~~a~a~~~ii~ail~~~~~~~~v~~~s-~~~~~~--~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~ 314 (323)
T PLN00106 238 AGSATLSMAYAAARFADACLRGLNGEADVVECS-YVQSEV--TELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALK 314 (323)
T ss_pred CCCchHHHHHHHHHHHHHHHhccCCCceEEEEE-EECccc--CCceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999995 66899999 666664 33499999999999999999998 99999999999999
Q ss_pred HHHHHHHH
Q psy12825 478 ATISQIQK 485 (488)
Q Consensus 478 ~~i~~~~~ 485 (488)
+.|++.++
T Consensus 315 ~~i~~~~~ 322 (323)
T PLN00106 315 PELKASIE 322 (323)
T ss_pred HHHHHHhh
Confidence 99998765
No 32
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=7.1e-53 Score=429.03 Aligned_cols=287 Identities=29% Similarity=0.432 Sum_probs=256.5
Q ss_pred ceEEEEec-ccchHHHHHHHHH-cCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE--cCC-ccccCCCcEEEEe
Q psy12825 178 QKITVVGA-GQVGMACTYSILT-QGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES--GSD-IAMSEGSRIVIIT 252 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~-~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~--ttd-~eal~dADiVIit 252 (488)
|||+|||| |.+|+++++.+.. .+...+|+|+|+++. .++.++|+.|.. ....+.. .+| +++++|+|+||++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~~---~~~~i~~~~~~d~~~~l~~~DiVIit 76 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHIP---TAVKIKGFSGEDPTPALEGADVVLIS 76 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcCC---CCceEEEeCCCCHHHHcCCCCEEEEc
Confidence 69999999 9999999998866 466789999999854 667788998741 1234443 356 6899999999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHH----HhcCCCCCcEEeecCChHHHHHH
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISW----KLSGFPKNRVIGSGTNLDSMRFR 328 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~----k~sg~p~~rViG~gt~lds~R~~ 328 (488)
+|.++++|++|.+++..|+++++++++.|++++|+++++++|||+|+||++++ +++|+|++||||+| .||++|++
T Consensus 77 aG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~-~Lds~R~~ 155 (312)
T PRK05086 77 AGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVT-TLDVIRSE 155 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeee-cHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987 89999999999995 59999999
Q ss_pred HHHHHHhCCCCCCceeEEEeecCC-CcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhc---CC
Q psy12825 329 VLLAQKLGLSPESVHGFIIGEHGD-SSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK---GY 404 (488)
Q Consensus 329 ~~lA~~Lgv~p~~V~~~V~G~HG~-~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~k---g~ 404 (488)
+++|++++++|++|+++||||||+ +++|+||++ +|.|+ ++++++++.+++++++++|++.| |+
T Consensus 156 ~~ia~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~--~g~~l-----------~~~~~~~i~~~v~~~g~~ii~~k~~~g~ 222 (312)
T PRK05086 156 TFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV--PGVSF-----------TEQEVADLTKRIQNAGTEVVEAKAGGGS 222 (312)
T ss_pred HHHHHHhCCChhheEEEEEEecCCCceecccccc--CCccC-----------CHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 999999999999999999999976 999999999 77765 23458899999999999999987 89
Q ss_pred cchhhHHHHHHHHHHHHcC---CCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEecc-CCCHHHHHHHHHHHHHH
Q psy12825 405 TSWALGLSVASISHTLLNN---TNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQ-NLTPDEAEKLRKSAATI 480 (488)
Q Consensus 405 t~~s~A~a~~~ii~aIl~~---~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l-~L~~~E~~~L~~sa~~i 480 (488)
++||+|.++++++++|+.+ ++.++|++ +.+|+ |. .++|||+||++|++|+++++++ +|+++|+++|++|++.|
T Consensus 223 t~~~~a~a~~~~v~ai~~~~~~~~~v~~~~-~~~~~-g~-~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~i 299 (312)
T PRK05086 223 ATLSMGQAAARFGLSLVRALQGEQGVVECA-YVEGD-GK-YARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDTL 299 (312)
T ss_pred chhhHHHHHHHHHHHHHhcCCCCCcEEEEE-EEecc-CC-cceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999954 77899966 77876 64 5899999999999999999998 99999999999999999
Q ss_pred HHHHH
Q psy12825 481 SQIQK 485 (488)
Q Consensus 481 ~~~~~ 485 (488)
++.++
T Consensus 300 ~~~~~ 304 (312)
T PRK05086 300 KKDIA 304 (312)
T ss_pred HHHHH
Confidence 97653
No 33
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=1.5e-52 Score=417.04 Aligned_cols=258 Identities=42% Similarity=0.694 Sum_probs=243.7
Q ss_pred EEEEec-ccchHHHHHHHHHcC--CCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccCCCcEEEEeccc
Q psy12825 180 ITVVGA-GQVGMACTYSILTQG--IYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSEGSRIVIITAGV 255 (488)
Q Consensus 180 IaIIGA-G~vG~~ia~~La~~~--l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dADiVIitag~ 255 (488)
|+|||| |.+|.++++.|+..+ ...+|+|+|++++++++.++|++|........+++.++| +++++|||+||++++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 689999 999999999999998 778999999999999999999999864332467888888 6899999999999999
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHh
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKL 335 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~L 335 (488)
++++|++|.+++.+|++++++++++|+++||++|+|++|||+|++|+++++++|+|++||||+|| +|+.|+++++|+++
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~-ld~~r~~~~la~~l 159 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGT-LDPIRFRRILAEKL 159 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeec-chHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999988 99999999999999
Q ss_pred CCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHH
Q psy12825 336 GLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVAS 415 (488)
Q Consensus 336 gv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~ 415 (488)
++++++|+++|||+||++++|+||+++ +|.++++
T Consensus 160 ~v~~~~v~~~v~G~hg~~~~~~~s~~~----------------------------------------------~a~~~~~ 193 (263)
T cd00650 160 GVDPDDVKVYILGEHGGSQVPDWSTVR----------------------------------------------IATSIAD 193 (263)
T ss_pred CCCccceEEEEEEcCCCceEeccccch----------------------------------------------HHHHHHH
Confidence 999999999999999999999999862 6678899
Q ss_pred HHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHH
Q psy12825 416 ISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQ 484 (488)
Q Consensus 416 ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~ 484 (488)
++++|++|++.++|++++++|+||+|+|++||+||+++++|++++++++|+++|+++|+++++.++..+
T Consensus 194 ii~ai~~~~~~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~~~l~~~e~~~l~~s~~~~~~~~ 262 (263)
T cd00650 194 LIRSLLNDEGEILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEVGLTDFELEKLQKSADTLKKEL 262 (263)
T ss_pred HHHHHHcCCCEEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEecCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998899999999999999999998764
No 34
>KOG1494|consensus
Probab=100.00 E-value=7.1e-45 Score=352.95 Aligned_cols=291 Identities=25% Similarity=0.389 Sum_probs=251.9
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcC-C--c-cccCCCc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS-D--I-AMSEGSR 247 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~tt-d--~-eal~dAD 247 (488)
...+..||+|+|| |.+|+.+...|-+..+.+++.|||+.. ..|.+.||+|+.. ...+...+ + + .++++||
T Consensus 24 ~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~--~~GVaaDlSHI~T---~s~V~g~~g~~~L~~al~~ad 98 (345)
T KOG1494|consen 24 GSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIAN--TPGVAADLSHINT---NSSVVGFTGADGLENALKGAD 98 (345)
T ss_pred cccCcceEEEEecCCccCccHHHHHhcCcccceeeeeeccc--CCcccccccccCC---CCceeccCChhHHHHHhcCCC
Confidence 5667889999999 999999888887788899999999974 5789999999853 33444332 2 3 5899999
Q ss_pred EEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch----hHHHHHHHhcCCCCCcEEeecCChH
Q psy12825 248 IVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD----VLTYISWKLSGFPKNRVIGSGTNLD 323 (488)
Q Consensus 248 iVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd----i~t~~~~k~sg~p~~rViG~gt~ld 323 (488)
+|||.+|+||||||+|+|+|..|+.|+++++..+.++||++.+.++|||+| +.++++++..-|+|+|+||+ |.||
T Consensus 99 vVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGV-TtLD 177 (345)
T KOG1494|consen 99 VVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGV-TTLD 177 (345)
T ss_pred EEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceece-ehhh
Confidence 999999999999999999999999999999999999999999999999998 66788888888999999999 9999
Q ss_pred HHHHHHHHHHHhCCCC-CCceeEEEeec-CCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh
Q psy12825 324 SMRFRVLLAQKLGLSP-ESVHGFIIGEH-GDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL 401 (488)
Q Consensus 324 s~R~~~~lA~~Lgv~p-~~V~~~V~G~H-G~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~ 401 (488)
..|+++++++.++++| ++++++|+|+| |.+.+|++|+... .+ .+++++++.++.+++.+|.||++.
T Consensus 178 vVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p----------~~--~~~~~~~~~Lt~RiQ~gGtEVV~A 245 (345)
T KOG1494|consen 178 VVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKP----------PF--RFTDDEIEALTHRIQNGGTEVVKA 245 (345)
T ss_pred hhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCC----------cc--cCCHHHHHHHHHHHHhCCceEEEe
Confidence 9999999999999999 55999999999 7899999999852 11 356888999999999999999988
Q ss_pred c---CCcchhhHHHHHHHHHHHHcCC-C-cEEEEEeeecCc-CCCCCceEEEEEEEEcCCceEEEec-cCCCHHHHHHHH
Q psy12825 402 K---GYTSWALGLSVASISHTLLNNT-N-KIHAVSTLIQGH-HGIEEEVFLSLPCVMADNGVTHIIN-QNLTPDEAEKLR 474 (488)
Q Consensus 402 k---g~t~~s~A~a~~~ii~aIl~~~-~-~v~~vsv~~~G~-ygl~~d~~~svPv~igk~Gv~~i~~-l~L~~~E~~~L~ 474 (488)
| |++.+++|++.+++.++++.+. + +-..-+.|+... ++++ ||+.|+++|++|++++.. .+|+++|++.|+
T Consensus 246 KaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~~~~~~---fFaspv~Lg~~Gv~~v~~l~~lsd~E~~~l~ 322 (345)
T KOG1494|consen 246 KAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAFVASPVTELP---FFATPVTLGKKGVEEVLGLGKLSDYEEKALE 322 (345)
T ss_pred ccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEeEEeccccCcc---ceeceEEecCCceeeecCCCccCHHHHHHHH
Confidence 7 7889999999999999988742 1 222334556554 5654 999999999999999998 599999999999
Q ss_pred HHHHHHHHHH
Q psy12825 475 KSAATISQIQ 484 (488)
Q Consensus 475 ~sa~~i~~~~ 484 (488)
.+..+|++.+
T Consensus 323 ~~~~eLk~sI 332 (345)
T KOG1494|consen 323 AAKPELKKSI 332 (345)
T ss_pred HHHHHHHHHH
Confidence 9999999665
No 35
>KOG1496|consensus
Probab=100.00 E-value=1.4e-43 Score=337.39 Aligned_cols=301 Identities=21% Similarity=0.268 Sum_probs=269.2
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCC-----CCeEEEEeCC--hhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGI-----YSNFCLIDSN--EDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGS 246 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l-----~~el~L~Di~--~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dA 246 (488)
.+.+|.|.|| |.+|+++.+.++.+.. .-.++|+|+. .+.++|..++|+|++ ++....+..++|. ++|+|.
T Consensus 3 epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a-~PlL~~Vvattd~~~afkdv 81 (332)
T KOG1496|consen 3 EPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCA-LPLLKGVVATTDEVEAFKDV 81 (332)
T ss_pred CceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhh-hhHHHhhhcccChhhhhccC
Confidence 5679999998 9999999999987632 3479999994 478999999999997 6777788888887 799999
Q ss_pred cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCchhHHHHHHHhc-CCCCCcEEeecCChHH
Q psy12825 247 RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPVDVLTYISWKLS-GFPKNRVIGSGTNLDS 324 (488)
Q Consensus 247 DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPvdi~t~~~~k~s-g~p~~rViG~gt~lds 324 (488)
|+.|...+.||++||+|.|++..|.+|++..+..+++|+ |+.++++++||+|.++.++.++. .+|.+++-.+ |.||+
T Consensus 82 ~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~k~ApsIP~kNfs~l-TRLDh 160 (332)
T KOG1496|consen 82 DVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILKKFAPSIPEKNFSAL-TRLDH 160 (332)
T ss_pred cEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHhhhCCCCchhcchhh-hhhch
Confidence 999999999999999999999999999999999999994 89999999999999999998876 7999998888 99999
Q ss_pred HHHHHHHHHHhCCCCCCce-eEEEeecCCCcccccccceecC----ccccccCCCCCCCCChHHH--HHHHHHHhhhHHH
Q psy12825 325 MRFRVLLAQKLGLSPESVH-GFIIGEHGDSSVPVWSGVNVAG----VTLKELNPTIGTEQDTENF--VRLHADVVNSAYE 397 (488)
Q Consensus 325 ~R~~~~lA~~Lgv~p~~V~-~~V~G~HG~~~vp~~S~a~v~g----~pl~e~~~~~~~~~~~~~~--~el~~~v~~~~~e 397 (488)
+|+..+||.++|++.++|+ .++||||+.+|||++.++++++ .|+.+.+. ++.| .+|.+.|++||..
T Consensus 161 NRA~~QlA~klgv~~~~VkNviIWGNHSsTQyPD~~hA~V~~~~~~~~v~e~v~-------d~~wL~g~Fi~tVQkRGaa 233 (332)
T KOG1496|consen 161 NRALAQLALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVNTNGGEKPVKEAVK-------DDAWLQGEFIETVQKRGAA 233 (332)
T ss_pred hhHHHHHHHhhCCchhhcceeEEecccccccCCCccceeeeccCCcccHHHHhc-------cchhhccchhhHHHhcchH
Confidence 9999999999999999997 5899999999999999999976 66766543 4556 5699999999999
Q ss_pred HHHhcCCc-chhhHHHHHHHHHHHHcC--CCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEec-cCCCHHHHHHH
Q psy12825 398 VIKLKGYT-SWALGLSVASISHTLLNN--TNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIIN-QNLTPDEAEKL 473 (488)
Q Consensus 398 Ii~~kg~t-~~s~A~a~~~ii~aIl~~--~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~-l~L~~~E~~~L 473 (488)
+++.++.+ .++.|.++++-|+.|+.+ ++++++++|+++|.||+|+|..||+||++ ++|-|++++ ++++++-++++
T Consensus 234 vi~ark~SSA~SaA~aacDhi~dw~~gTpeG~fvSmgV~sDGsYgip~gli~SfPv~~-k~g~wkiVqgl~iddf~r~km 312 (332)
T KOG1496|consen 234 VIKARKLSSAMSAAKAACDHIRDWWFGTPEGTFVSMGVYSDGSYGIPDGLIFSFPVTI-KNGDWKIVQGLPIDDFSREKM 312 (332)
T ss_pred hhhhhhhhhhhhHHHhHhhhhhheecCCCCccEEEEeeecCCCCCCCCCeEEEcceEe-cCCceEEEcCcchhHHHHHhh
Confidence 99887655 467788999999999876 57999999999999999999999999999 579999998 79999999999
Q ss_pred HHHHHHHHHHHHh
Q psy12825 474 RKSAATISQIQKG 486 (488)
Q Consensus 474 ~~sa~~i~~~~~~ 486 (488)
..++++|.+..+.
T Consensus 313 ~~t~~EL~eEkd~ 325 (332)
T KOG1496|consen 313 DLTAKELKEEKDL 325 (332)
T ss_pred hhhHHHHHHhHHH
Confidence 9999999977654
No 36
>PRK15076 alpha-galactosidase; Provisional
Probab=100.00 E-value=7e-36 Score=316.16 Aligned_cols=291 Identities=19% Similarity=0.205 Sum_probs=219.3
Q ss_pred CceEEEEecccchHHHHH--HHH-HcCCC-CeEEEEeCChhHHHHHHHHHhhcCCC-CCCCcEEEcCC-ccccCCCcEEE
Q psy12825 177 DQKITVVGAGQVGMACTY--SIL-TQGIY-SNFCLIDSNEDRCKGEMLDLQHGAPF-LRSPKIESGSD-IAMSEGSRIVI 250 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~--~La-~~~l~-~el~L~Di~~e~l~g~~~dL~~~~~~-~~~~~v~~ttd-~eal~dADiVI 250 (488)
++||+|||||++|++.++ .++ ..++. .+|+|+|+++++++.....+.+.... ....+++.++| +++++||||||
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv 80 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVI 80 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEe
Confidence 369999999999988766 665 34554 49999999999988433336555322 23468888899 58999999999
Q ss_pred Eecccc-cCCC--------------cchHhh--------HhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHh
Q psy12825 251 ITAGVR-SLVG--------------ETRLQL--------VDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKL 307 (488)
Q Consensus 251 itag~~-~k~G--------------~~r~dl--------l~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~ 307 (488)
++++++ .+++ ++|.+. +.+|++++++++++|+++||++|+|++|||++++|++++
T Consensus 81 ~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-- 158 (431)
T PRK15076 81 NAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-- 158 (431)
T ss_pred EeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh--
Confidence 999886 4444 456677 899999999999999999999999999999999999987
Q ss_pred cCCCCCcEEeec-CChHHHHHHHHHHHHhCCCCCCceeEEEe-ecCCCcccccccceecCccccccC-------------
Q psy12825 308 SGFPKNRVIGSG-TNLDSMRFRVLLAQKLGLSPESVHGFIIG-EHGDSSVPVWSGVNVAGVTLKELN------------- 372 (488)
Q Consensus 308 sg~p~~rViG~g-t~lds~R~~~~lA~~Lgv~p~~V~~~V~G-~HG~~~vp~~S~a~v~g~pl~e~~------------- 372 (488)
++|+.||||++ +.+++ .+.+|+.+|+++++|+.++.| || +.|+.+.+.+|+++...+
T Consensus 159 -~~~~~rviG~c~~~~~~---~~~ia~~l~v~~~~v~~~~~GlNH----~~W~~~~~~~G~D~~p~l~~~~~~~~~~~~~ 230 (431)
T PRK15076 159 -RYPGIKTVGLCHSVQGT---AEQLARDLGVPPEELRYRCAGINH----MAWYLELERKGEDLYPELRAAAAEGQTRCQD 230 (431)
T ss_pred -cCCCCCEEEECCCHHHH---HHHHHHHhCCCHHHeEEEEEeecc----hhhheeeeECCcchHHHHHHHHhccCchhcc
Confidence 57788999996 66665 388999999999999999999 99 788888887775543110
Q ss_pred -------------CC--------CCCCC----ChHHHHHHH----HHHh------hhHHHHH-HhcCCcch---hhHHHH
Q psy12825 373 -------------PT--------IGTEQ----DTENFVRLH----ADVV------NSAYEVI-KLKGYTSW---ALGLSV 413 (488)
Q Consensus 373 -------------~~--------~~~~~----~~~~~~el~----~~v~------~~~~eIi-~~kg~t~~---s~A~a~ 413 (488)
+. +..++ .++..++.. +..+ ....+.+ ..++...| ..+..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a 310 (431)
T PRK15076 231 KVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELANAERIEIKRSREYA 310 (431)
T ss_pred cccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhCCCccccccchHHH
Confidence 00 00011 222222211 1000 1111111 12232122 134578
Q ss_pred HHHHHHHHcCCCcEEEEEeeecCc-CCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHH
Q psy12825 414 ASISHTLLNNTNKIHAVSTLIQGH-HGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477 (488)
Q Consensus 414 ~~ii~aIl~~~~~v~~vsv~~~G~-ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa 477 (488)
+++++||.+|.+.++.++|.|+|. .|+|+|.++++||+|+++|++|+...+||+..+++++.-.
T Consensus 311 ~~ii~ai~~~~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~~g~lP~~~~~l~~~~~ 375 (431)
T PRK15076 311 STIIEAIETGEPSVIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTKVGDLPPQLAALNRTNI 375 (431)
T ss_pred HHHHHHHhcCCceEEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeeecCCCCHHHHHHHHHHH
Confidence 999999999999999999999998 7999999999999999999999988999999999877643
No 37
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=100.00 E-value=3e-35 Score=310.52 Aligned_cols=287 Identities=21% Similarity=0.218 Sum_probs=213.2
Q ss_pred ceEEEEecccchHH--HHHHHHHcC--C-CCeEEEEeCChhHHHHHHHHHhhcC--CCCCCCcEEEcCCc-cccCCCcEE
Q psy12825 178 QKITVVGAGQVGMA--CTYSILTQG--I-YSNFCLIDSNEDRCKGEMLDLQHGA--PFLRSPKIESGSDI-AMSEGSRIV 249 (488)
Q Consensus 178 ~KIaIIGAG~vG~~--ia~~La~~~--l-~~el~L~Di~~e~l~g~~~dL~~~~--~~~~~~~v~~ttd~-eal~dADiV 249 (488)
+||+|||||+. ++ +...|+... + .++|+|+|+|+++++. +..+.+.. ......++..|+|+ +||+|||||
T Consensus 1 ~KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~-v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfV 78 (425)
T cd05197 1 VKIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDI-ILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFV 78 (425)
T ss_pred CEEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEE
Confidence 69999999995 33 344444432 4 4799999999998875 33333221 12235688999998 799999999
Q ss_pred EEecccc------------cCCCc---c-----hHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcC
Q psy12825 250 IITAGVR------------SLVGE---T-----RLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSG 309 (488)
Q Consensus 250 Iitag~~------------~k~G~---~-----r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg 309 (488)
|.+..+. .++|. + ......+|++++++++++|+++||++|+||+|||++++|+++++++
T Consensus 79 i~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~~~~~- 157 (425)
T cd05197 79 INQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAVRRYV- 157 (425)
T ss_pred EEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHHHHhC-
Confidence 9997543 23432 1 3445689999999999999999999999999999999999999984
Q ss_pred CCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEEe-ecCCCcccccccceecCccccccCC----C----------
Q psy12825 310 FPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIG-EHGDSSVPVWSGVNVAGVTLKELNP----T---------- 374 (488)
Q Consensus 310 ~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G-~HG~~~vp~~S~a~v~g~pl~e~~~----~---------- 374 (488)
|+.||||+++. +.|+++.+|+.+|+++++|+.+|+| ||| +|||+++++|+|+...+. .
T Consensus 158 -p~~rviG~c~~--~~r~~~~ia~~lgv~~~~v~~~v~GlnHg----~~~s~~~~~G~~l~p~l~~~~~~~~~~~~~~~~ 230 (425)
T cd05197 158 -PPEKAVGLCNV--PIGVMEIVAKLLGESEEKVDWQYAGLNHG----IWLNRVRYNGGDVTPKLDEWVEEKSKDWKTENP 230 (425)
T ss_pred -CCCcEEEECCC--HHHHHHHHHHHhCCCHHHeEEEEEeccCe----EeeEeEEECCeecHHHHHHHHhccCcccccccc
Confidence 77899999555 8999999999999999999999999 996 999999999987652110 0
Q ss_pred -------C--------C--------CC-CChHHHH----H-----------------HHHHHhhh---H-HHHHHhcCCc
Q psy12825 375 -------I--------G--------TE-QDTENFV----R-----------------LHADVVNS---A-YEVIKLKGYT 405 (488)
Q Consensus 375 -------~--------~--------~~-~~~~~~~----e-----------------l~~~v~~~---~-~eIi~~kg~t 405 (488)
+ + ++ +.+...+ + +.+..+.. . ..-+..++..
T Consensus 231 ~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~r~~~ 310 (425)
T cd05197 231 FVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVVELIKRGGR 310 (425)
T ss_pred ccccccchHHHHHHhCCCcccCCccccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChhhhhhcCCc
Confidence 0 0 00 0000001 0 11111000 0 0001111222
Q ss_pred chhhHHHHHHHHHHHHcCCCcEEEEEeeecCc-CCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHH
Q psy12825 406 SWALGLSVASISHTLLNNTNKIHAVSTLIQGH-HGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKS 476 (488)
Q Consensus 406 ~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~-ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~s 476 (488)
. .+..++++++||.+|++.++.++|.|+|. -|+|+|+++++||+|+++|++|+...+||+..+.+++.-
T Consensus 311 ~--~~e~a~~ii~ai~~~~~~~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~~vg~lp~~~~~Li~~~ 380 (425)
T cd05197 311 K--YSEAAIPLIRALLNDNGARFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPIKVGPLDRFVKGLLRQR 380 (425)
T ss_pred c--cHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceecccCCCCHHHHHHHHHH
Confidence 2 34568899999999999999999999998 799999999999999999999998889999888877764
No 38
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=100.00 E-value=1.3e-34 Score=305.08 Aligned_cols=289 Identities=19% Similarity=0.287 Sum_probs=215.2
Q ss_pred ceEEEEecccchHH-HHHHHHHc--CC-CCeEEEEeCC-hhHHHHHHHHHhhcCC-CCCCCcEEEcCCc-cccCCCcEEE
Q psy12825 178 QKITVVGAGQVGMA-CTYSILTQ--GI-YSNFCLIDSN-EDRCKGEMLDLQHGAP-FLRSPKIESGSDI-AMSEGSRIVI 250 (488)
Q Consensus 178 ~KIaIIGAG~vG~~-ia~~La~~--~l-~~el~L~Di~-~e~l~g~~~dL~~~~~-~~~~~~v~~ttd~-eal~dADiVI 250 (488)
+||+|||||++-+. +...|+.. .+ .++|+|+|+| +++++......+.... .....+++.|+|+ +|++||||||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi 80 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF 80 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 69999999996322 34455553 23 4899999999 8988754333333221 2235688899998 6899999999
Q ss_pred EecccccCCCcchHh--------------------hHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCC
Q psy12825 251 ITAGVRSLVGETRLQ--------------------LVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGF 310 (488)
Q Consensus 251 itag~~~k~G~~r~d--------------------ll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~ 310 (488)
++++++..++.++++ ...+|++++++++++|+++||++|+|++|||++++|+++++.+
T Consensus 81 ~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~~k~~-- 158 (419)
T cd05296 81 TQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAVLRHT-- 158 (419)
T ss_pred EEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHHHhc--
Confidence 999887665554443 3689999999999999999999999999999999999999886
Q ss_pred CCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEEe-ecCCCcccccccceecCcccccc------------------
Q psy12825 311 PKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIG-EHGDSSVPVWSGVNVAGVTLKEL------------------ 371 (488)
Q Consensus 311 p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G-~HG~~~vp~~S~a~v~g~pl~e~------------------ 371 (488)
+.||||+ |+. +.|+++.+|+.+|+++++|+.+|+| || +.|+.+.+.+|+++...
T Consensus 159 -~~rviGl-c~~-~~r~~~~ia~~lg~~~~~v~~~v~GlNH----~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~~~ 231 (419)
T cd05296 159 -GDRVIGL-CNV-PIGLQRRIAELLGVDPEDVFIDYAGLNH----LGWLRRVLLDGEDVLPELLEDLAALLSFEEGLLFG 231 (419)
T ss_pred -cCCEEee-CCc-HHHHHHHHHHHhCCCHHHceEEEEeccc----ceeeeeeeECCcccHHHHHHHhhhccccccccchH
Confidence 5799999 666 4799999999999999999999999 99 77888777777664420
Q ss_pred ---------CCC--CCCC-CChHHHHHHHHHHhhhH-------HHH---------------HHhcCCcchhhHHHHHHHH
Q psy12825 372 ---------NPT--IGTE-QDTENFVRLHADVVNSA-------YEV---------------IKLKGYTSWALGLSVASIS 417 (488)
Q Consensus 372 ---------~~~--~~~~-~~~~~~~el~~~v~~~~-------~eI---------------i~~kg~t~~s~A~a~~~ii 417 (488)
+|. +.++ +.++.+++......+++ .++ +..++...| +..+++++
T Consensus 232 ~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~r~g~~y--~e~a~~ii 309 (419)
T cd05296 232 PELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEKRGGAGY--SEAALALI 309 (419)
T ss_pred HHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhHhhcCcch--HHHHHHHH
Confidence 000 0001 11221121111100011 111 112222233 35689999
Q ss_pred HHHHcCCCcEEEEEeeecCc-CCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHH
Q psy12825 418 HTLLNNTNKIHAVSTLIQGH-HGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477 (488)
Q Consensus 418 ~aIl~~~~~v~~vsv~~~G~-ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa 477 (488)
+||.++.+.++.+||.|+|. .|+|+|+++++||.|+++|++|+...+||+..+++++.-.
T Consensus 310 ~ai~~~~~~~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~vg~lP~~~~~l~~~~~ 370 (419)
T cd05296 310 SAIYNDKGDIHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLPVGPLPPAILGLIQQVK 370 (419)
T ss_pred HHHhcCCCcEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccCCCCCHHHHHHHHHHH
Confidence 99999999999999999998 7999999999999999999999988899999988876543
No 39
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=100.00 E-value=1.3e-34 Score=271.40 Aligned_cols=167 Identities=39% Similarity=0.642 Sum_probs=155.9
Q ss_pred CChHHHHHHHHHHHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHH
Q psy12825 320 TNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVI 399 (488)
Q Consensus 320 t~lds~R~~~~lA~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi 399 (488)
|.||++|++++||+++|++|.+|+++||||||+++||+||+++++|.|+.++.+.. ..+++++++++.+.+++++++|+
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~s~~~~~S~~~v~g~pl~~~~~~~-~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGDSQVPDWSHAKVGGVPLLSYAKPS-GKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSSTTEEEEGGGEEETTEEHHHHHHTT-TSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEEEEEecCCcceeeeeecccccccccccccccc-cchhHHhhhccccccEeccceee
Confidence 67999999999999999999999999999999999999999999999997765322 13567788999999999999999
Q ss_pred Hhc-CCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCc-eEEEEEEEEcCCceEEEec-cCCCHHHHHHHHHH
Q psy12825 400 KLK-GYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEE-VFLSLPCVMADNGVTHIIN-QNLTPDEAEKLRKS 476 (488)
Q Consensus 400 ~~k-g~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d-~~~svPv~igk~Gv~~i~~-l~L~~~E~~~L~~s 476 (488)
+.| |+++||+|+++++++++|+.+.+.++|++++.+|+||++++ +|||+||++|++|++++++ ++|+++|+++|++|
T Consensus 80 ~~k~g~t~~s~A~a~~~~v~ail~~~~~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~s 159 (174)
T PF02866_consen 80 KAKGGSTSYSIAAAAARIVEAILKDERRILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQEKLKES 159 (174)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHTTHTEEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHHHHHHHH
T ss_pred eeccccCcCCHHHHHHHHHHHHhhcccccccceeccccccCcccccceecceEEEcCCeeEEEeCCCCCCHHHHHHHHHH
Confidence 999 99999999999999999999999999999999999999877 9999999999999999999 99999999999999
Q ss_pred HHHHHHHHHhh
Q psy12825 477 AATISQIQKGL 487 (488)
Q Consensus 477 a~~i~~~~~~~ 487 (488)
++.|++.++..
T Consensus 160 a~~l~~~i~~~ 170 (174)
T PF02866_consen 160 AKELKKEIEKG 170 (174)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888654
No 40
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=100.00 E-value=5.6e-33 Score=293.83 Aligned_cols=290 Identities=17% Similarity=0.202 Sum_probs=212.1
Q ss_pred ceEEEEecccchHH--HHHHHHHc--CC-CCeEEEEeCChhHHHHHHHHHhhcC-C-CCCCCcEEEcCCc-cccCCCcEE
Q psy12825 178 QKITVVGAGQVGMA--CTYSILTQ--GI-YSNFCLIDSNEDRCKGEMLDLQHGA-P-FLRSPKIESGSDI-AMSEGSRIV 249 (488)
Q Consensus 178 ~KIaIIGAG~vG~~--ia~~La~~--~l-~~el~L~Di~~e~l~g~~~dL~~~~-~-~~~~~~v~~ttd~-eal~dADiV 249 (488)
+||+|||||+. ++ +...|+.. .+ .++|+|+|+|+++++. +..+.+.. . .....+|+.|+|+ +||+|||||
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~-v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfV 78 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEK-VAEAVKILFKENYPEIKFVYTTDPEEAFTDADFV 78 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHH-HHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEE
Confidence 69999999995 33 34445544 24 4899999999999875 34443321 1 2235689999997 799999999
Q ss_pred EEecccc------------cCCCc---c-----hHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcC
Q psy12825 250 IITAGVR------------SLVGE---T-----RLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSG 309 (488)
Q Consensus 250 Iitag~~------------~k~G~---~-----r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg 309 (488)
|++..+. .++|. + ......||++++.+++++|+++||++|+|++|||++++|+++++.
T Consensus 79 i~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~~~~-- 156 (437)
T cd05298 79 FAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALRRL-- 156 (437)
T ss_pred EEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHH--
Confidence 9997543 23332 2 234578999999999999999999999999999999999999987
Q ss_pred CCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEEe-ecCCCcccccccceec-CccccccCC----C--C------
Q psy12825 310 FPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIG-EHGDSSVPVWSGVNVA-GVTLKELNP----T--I------ 375 (488)
Q Consensus 310 ~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G-~HG~~~vp~~S~a~v~-g~pl~e~~~----~--~------ 375 (488)
+|..||||+ |+... .+...+|+.||+++++|+..+.| || +.|+.+.+.+ |+++...+. . +
T Consensus 157 ~~~~kviGl-C~~~~-~~~~~la~~lg~~~~~v~~~~~GlNH----~~w~~~~~~~~G~D~~p~l~e~~~~~~~~~~~~~ 230 (437)
T cd05298 157 FPNARILNI-CDMPI-AIMDSMAAILGLDRKDLEPDYFGLNH----FGWFTKIYDKQGEDLLPKLREHVKENGYLPPDSD 230 (437)
T ss_pred CCCCCEEEE-CCcHH-HHHHHHHHHhCCCHHHceEEEEeecc----hhhhhheEECCCCchHHHHHHHHhccCCCccccc
Confidence 777899999 99864 68999999999999999999999 99 7777777777 755432110 0 0
Q ss_pred ----------------------C---------CCCChHH-HHHHHH-------HHhhhHHHH---HH---hcCCc---ch
Q psy12825 376 ----------------------G---------TEQDTEN-FVRLHA-------DVVNSAYEV---IK---LKGYT---SW 407 (488)
Q Consensus 376 ----------------------~---------~~~~~~~-~~el~~-------~v~~~~~eI---i~---~kg~t---~~ 407 (488)
+ +++..++ .+++.. .+.....+. .+ ..+.. .+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~ 310 (437)
T cd05298 231 EEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIETGTAEGSTF 310 (437)
T ss_pred ccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhhcCChhhhhh
Confidence 0 0000100 011100 000001111 00 00100 11
Q ss_pred ---hhHHHHHHHHHHHHcCCCcEEEEEeeecCcC-CCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHH
Q psy12825 408 ---ALGLSVASISHTLLNNTNKIHAVSTLIQGHH-GIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477 (488)
Q Consensus 408 ---s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~y-gl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa 477 (488)
..|.+++++++||++|++.++++|++|+|.| |+|+|+++|+||+||++|+.++...+||+...++++.-.
T Consensus 311 ~~~~ya~~a~~ii~aI~~d~~~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi~vg~lP~~~~~l~~~~~ 384 (437)
T cd05298 311 HVDVHGEYIVDLAASIAYNTKERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPLVVGKIPTFYKGLMEQQV 384 (437)
T ss_pred hccchHHHHHHHHHHHHcCCCeEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceecccCCCCHHHHHHHHHHH
Confidence 2467899999999999999999999999996 789999999999999999999988999999988877543
No 41
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=100.00 E-value=1.1e-31 Score=284.02 Aligned_cols=291 Identities=21% Similarity=0.203 Sum_probs=216.7
Q ss_pred ceEEEEecccchHHHHH--HHHHc-CCC-CeEEEEeCChhHHHHHHHHHhhcCC-CCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 178 QKITVVGAGQVGMACTY--SILTQ-GIY-SNFCLIDSNEDRCKGEMLDLQHGAP-FLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~--~La~~-~l~-~el~L~Di~~e~l~g~~~dL~~~~~-~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
+||+|||||++|++.+. .++.. .+. .+|+|+|+++++++....++.+... .....++..++|+ ++++||||||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 58999999999998766 45543 443 4999999999999988888876532 1234678888996 78999999999
Q ss_pred ecccccCCCcch----------------------HhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcC
Q psy12825 252 TAGVRSLVGETR----------------------LQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSG 309 (488)
Q Consensus 252 tag~~~k~G~~r----------------------~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg 309 (488)
+++.+..++.++ .....+|++++.++++.+.++||++|++++|||++++|+++++.++
T Consensus 81 ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k~~~ 160 (423)
T cd05297 81 TIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP 160 (423)
T ss_pred eeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHHhCC
Confidence 997654444333 3456799999999999999999999999999999999999999886
Q ss_pred CCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEEe-ecCCCcccccccceecCccccccCC---------------
Q psy12825 310 FPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIG-EHGDSSVPVWSGVNVAGVTLKELNP--------------- 373 (488)
Q Consensus 310 ~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G-~HG~~~vp~~S~a~v~g~pl~e~~~--------------- 373 (488)
.|+||+ |+. +.+++..+|+.+++++++|+.+|+| || +.||.+.+.+|+++...+.
T Consensus 161 ---~rviG~-c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH----~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~~~~ 231 (423)
T cd05297 161 ---IKTVGL-CHG-VQGTAEQLAKLLGEPPEEVDYQVAGINH----MAWLLKFEYNGEDLYPLLDEWIEEGSEEWDQLSP 231 (423)
T ss_pred ---CCEEEE-CCc-HHHHHHHHHHHhCCCHHHeEEEEEeecc----HhhhhhheECCcchHHHHHHHHhccCccchhccc
Confidence 589999 443 7889999999999999999999999 99 7777777777655431100
Q ss_pred -------CCC-----------C---C-CCh-HHHHHH----------HHHHhhhHHHHHHhcC------Ccch---hhHH
Q psy12825 374 -------TIG-----------T---E-QDT-ENFVRL----------HADVVNSAYEVIKLKG------YTSW---ALGL 411 (488)
Q Consensus 374 -------~~~-----------~---~-~~~-~~~~el----------~~~v~~~~~eIi~~kg------~t~~---s~A~ 411 (488)
.++ + + +.. +..... .+.....-+.-..... ...+ ..+.
T Consensus 232 ~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 311 (423)
T cd05297 232 VRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEELDPVKRSGE 311 (423)
T ss_pred chHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhccchhcchhccccccchH
Confidence 000 0 0 000 110000 0000000000000000 0011 1345
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeecCc-CCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHH
Q psy12825 412 SVASISHTLLNNTNKIHAVSTLIQGH-HGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477 (488)
Q Consensus 412 a~~~ii~aIl~~~~~v~~vsv~~~G~-ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa 477 (488)
.++++++||.++.+.++.+|+.|+|. .|+|+|+++++||+|+++|++|+...+||...+++++.-.
T Consensus 312 ~a~~ii~ai~~~~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~~~g~lp~~~~~l~~~~~ 378 (423)
T cd05297 312 YASPIIEALVTGKPRRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPEKIGPLPPQLAALIRPRI 378 (423)
T ss_pred HHHHHHHHHhcCCceEEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceecccCCCCHHHHHHHHHHH
Confidence 68999999999999999999999998 7999999999999999999999988999999988877643
No 42
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-31 Score=277.03 Aligned_cols=295 Identities=19% Similarity=0.233 Sum_probs=211.8
Q ss_pred CCCceEEEEecccchHH-HHHHHHHc--CC-CCeEEEEeCChhHHHHHHHHHhhcC-C-CCCCCcEEEcCCc-cccCCCc
Q psy12825 175 SPDQKITVVGAGQVGMA-CTYSILTQ--GI-YSNFCLIDSNEDRCKGEMLDLQHGA-P-FLRSPKIESGSDI-AMSEGSR 247 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~-ia~~La~~--~l-~~el~L~Di~~e~l~g~~~dL~~~~-~-~~~~~~v~~ttd~-eal~dAD 247 (488)
++..||+||||||.++. +...++.+ .+ ..+|.|+|+++++++ ....+.+.. . .....++..++|+ +||+|||
T Consensus 1 m~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~-~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAd 79 (442)
T COG1486 1 MKKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLK-IIAILAKKLVEEAGAPVKVEATTDRREALEGAD 79 (442)
T ss_pred CCcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHH-HHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCC
Confidence 45689999999998776 23333333 23 469999999999998 344444321 1 1234788889997 7999999
Q ss_pred EEEEeccc------------ccCCCcc--------hHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHh
Q psy12825 248 IVIITAGV------------RSLVGET--------RLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKL 307 (488)
Q Consensus 248 iVIitag~------------~~k~G~~--------r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~ 307 (488)
|||.++.+ |.|+|.- ......|+++++-+|+++|+++||+||++|+|||+.++|+++.++
T Consensus 80 fVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~~vTeAv~r~ 159 (442)
T COG1486 80 FVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEAVRRL 159 (442)
T ss_pred EEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHHHHHHHHHHh
Confidence 99999754 3344432 223357999999999999999999999999999999999999997
Q ss_pred cCCCCCcEEeecCChHHHHHHHHHHHHhCCCC-CCceeEEEe-ecCCCcccccccceecCccccccC-------------
Q psy12825 308 SGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSP-ESVHGFIIG-EHGDSSVPVWSGVNVAGVTLKELN------------- 372 (488)
Q Consensus 308 sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p-~~V~~~V~G-~HG~~~vp~~S~a~v~g~pl~e~~------------- 372 (488)
+ |.-|+||+ |+.. ......+|+.|++++ ++++..+.| || +.||.+.+.+|.++.+-+
T Consensus 160 ~--~~~K~VGl-Ch~~-~g~~~~lAe~L~~~~~~~l~~~~aGlNH----~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~ 231 (442)
T COG1486 160 Y--PKIKIVGL-CHGP-IGIAMELAEVLGLEPREDLRYRVAGLNH----MVWILRVRDDGEDLYPELLEALEEGGSPSEP 231 (442)
T ss_pred C--CCCcEEee-CCch-HHHHHHHHHHhCCCchhceeEEEeechh----hhhhhHhhhcCccchHHHHHHHhccccCCcc
Confidence 5 43489999 9875 468999999999976 999999999 99 777777777764432100
Q ss_pred ----------------------CC--CCCCCChHHHH-----HH------HHHHhhhHHHH---------------HHhc
Q psy12825 373 ----------------------PT--IGTEQDTENFV-----RL------HADVVNSAYEV---------------IKLK 402 (488)
Q Consensus 373 ----------------------~~--~~~~~~~~~~~-----el------~~~v~~~~~eI---------------i~~k 402 (488)
+. ..+++.+..+. ++ .+.+.++..+. .+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~~~p~~~~~~ 311 (442)
T COG1486 232 ENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEKPEELEKR 311 (442)
T ss_pred ccccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhhcCchhhhhc
Confidence 00 00000000000 00 00111111111 1112
Q ss_pred CCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCc-CCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHH
Q psy12825 403 GYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGH-HGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAA 478 (488)
Q Consensus 403 g~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~-ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~ 478 (488)
+.+.=-++..+++|++||++|++.++.++|.|+|. .|+|+|.++++||.|+++|++++..++||+..+++++....
T Consensus 312 ~~~~~~~~e~a~~ii~Ai~~~~~~~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~g~lP~~~~~l~~~~i~ 388 (442)
T COG1486 312 IGAGKYSSEYASNIINAIENNKPSRIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAVGDLPEFVKGLMHTNIN 388 (442)
T ss_pred CCcccccHHHHHHHHHHHhcCCceEEEEEcCCCccccCCCCCeEEEeeEEecCCCCcccccCCCCHHHHHHHHHHHH
Confidence 22200123568999999999999999999999998 89999999999999999999998889999999998887643
No 43
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=99.97 E-value=8.4e-31 Score=237.88 Aligned_cols=140 Identities=44% Similarity=0.723 Sum_probs=129.3
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecccc
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVR 256 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~ 256 (488)
+||+|||| |.+|+++++.|+.+++.+||+|+|++++++++.++|++|...+........+.+|++++|||+||+++|.+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 69999999 99999999999999999999999999999999999999986533222233447899999999999999999
Q ss_pred cCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEe
Q psy12825 257 SLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317 (488)
Q Consensus 257 ~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG 317 (488)
+++|++|.+++..|+++++++++.|.+++|+++++++|||+|++|+++++++++|++||||
T Consensus 81 ~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~~~~~s~~~~~kviG 141 (141)
T PF00056_consen 81 RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYVAQKYSGFPPNKVIG 141 (141)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHHHHHHHTSSGGGEEE
T ss_pred ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHHHHHhhCcCcccCcC
Confidence 9999999999999999999999999999999999999999999999999999999999998
No 44
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=99.86 E-value=1.3e-20 Score=177.31 Aligned_cols=153 Identities=25% Similarity=0.272 Sum_probs=113.9
Q ss_pred eEEEEecccchHHH-HHHHHH-c-CC-CCeEEEEeCChhHHHH---HHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEE
Q psy12825 179 KITVVGAGQVGMAC-TYSILT-Q-GI-YSNFCLIDSNEDRCKG---EMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVI 250 (488)
Q Consensus 179 KIaIIGAG~vG~~i-a~~La~-~-~l-~~el~L~Di~~e~l~g---~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVI 250 (488)
||+|||||++-++. ...++. . .+ .++|+|+|+|+++++. .+..+.+. .....+|..|+|+ +|++||||||
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~--~~~~~~v~~ttd~~eAl~gADfVi 78 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEE--AGADLKVEATTDRREALEGADFVI 78 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHH--CTTSSEEEEESSHHHHHTTESEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHh--cCCCeEEEEeCCHHHHhCCCCEEE
Confidence 89999999987763 223333 2 23 3599999999999984 23333333 2346789999998 6899999999
Q ss_pred Eeccc------------ccCCCcc----------hHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhc
Q psy12825 251 ITAGV------------RSLVGET----------RLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLS 308 (488)
Q Consensus 251 itag~------------~~k~G~~----------r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~s 308 (488)
++..+ |.+.|.. ......|+++++.+++++|+++|||||+||+|||+.++|+++.+++
T Consensus 79 ~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~~r~~ 158 (183)
T PF02056_consen 79 NQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEALSRYT 158 (183)
T ss_dssp E---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHHHHHS
T ss_pred EEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHHHHhC
Confidence 99754 3454432 2345689999999999999999999999999999999999999886
Q ss_pred CCCCCcEEeecCChHHHHHHHHHHHHhCC
Q psy12825 309 GFPKNRVIGSGTNLDSMRFRVLLAQKLGL 337 (488)
Q Consensus 309 g~p~~rViG~gt~lds~R~~~~lA~~Lgv 337 (488)
+ ..|++|+ |+.. ......+|+.||.
T Consensus 159 ~--~~k~vGl-Ch~~-~~~~~~la~~L~~ 183 (183)
T PF02056_consen 159 P--KIKVVGL-CHGP-QGTRRQLAKLLGM 183 (183)
T ss_dssp T--TSEEEEE--SHH-HHHHHHHHHHHT-
T ss_pred C--CCCEEEE-CCCH-HHHHHHHHHHhCc
Confidence 4 3589999 9985 4689999999873
No 45
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.33 E-value=6.9e-12 Score=118.51 Aligned_cols=122 Identities=16% Similarity=0.225 Sum_probs=86.7
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-------CC------CCCcEEEcCCccccCC
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-------FL------RSPKIESGSDIAMSEG 245 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-------~~------~~~~v~~ttd~eal~d 245 (488)
||+|||||.||..+|..++..|+ +|+|||++++.++.....+.+... +. ...++..++|++++.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVD 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCT
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhh
Confidence 79999999999999999999998 999999999888765554444110 00 1457888999988889
Q ss_pred CcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEee
Q psy12825 246 SRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGS 318 (488)
Q Consensus 246 ADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~ 318 (488)
||+||+++ .++.++++++..+++++||+. .|++||.+.+-..-+..... .|+|++|+
T Consensus 79 adlViEai--------------~E~l~~K~~~~~~l~~~~~~~-~ilasnTSsl~i~~la~~~~-~p~R~ig~ 135 (180)
T PF02737_consen 79 ADLVIEAI--------------PEDLELKQELFAELDEICPPD-TILASNTSSLSISELAAALS-RPERFIGM 135 (180)
T ss_dssp ESEEEE-S---------------SSHHHHHHHHHHHHCCS-TT-SEEEE--SSS-HHHHHTTSS-TGGGEEEE
T ss_pred hheehhhc--------------cccHHHHHHHHHHHHHHhCCC-ceEEecCCCCCHHHHHhccC-cCceEEEE
Confidence 99999996 588999999999999998654 46799988743333333333 24666666
No 46
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.29 E-value=2.4e-11 Score=123.30 Aligned_cols=145 Identities=19% Similarity=0.289 Sum_probs=108.9
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC----C---C------CCCCcEEEcCCccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA----P---F------LRSPKIESGSDIAM 242 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~----~---~------~~~~~v~~ttd~ea 242 (488)
..+||+|||||.||.++|+.++..|+ +|+|+|++++.++.....+.... . . ....++..++|+++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~ 79 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAA 79 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhH
Confidence 35799999999999999999999767 89999999877665433333221 0 0 12456777888899
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh-HHHHHHHhcCCCCCcEE-----
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV-LTYISWKLSGFPKNRVI----- 316 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi-~t~~~~k~sg~p~~rVi----- 316 (488)
++|||+||+++ .+|.++.+++.+++++++++. .|+.||++.+ ++.+. +.+.. |+|++
T Consensus 80 l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~-aIlASNTSsl~it~ia-~~~~r-per~iG~HFf 142 (307)
T COG1250 80 LKDADLVIEAV--------------VEDLELKKQVFAELEALAKPD-AILASNTSSLSITELA-EALKR-PERFIGLHFF 142 (307)
T ss_pred hccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCC-cEEeeccCCCCHHHHH-HHhCC-chhEEEEecc
Confidence 99999999996 689999999999999998533 4679999984 44443 33322 34555
Q ss_pred -------------eecCChHHHHHHHHHHHHhCCCC
Q psy12825 317 -------------GSGTNLDSMRFRVLLAQKLGLSP 339 (488)
Q Consensus 317 -------------G~gt~lds~R~~~~lA~~Lgv~p 339 (488)
|--|.-++...-..+++.+|..|
T Consensus 143 NP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~ 178 (307)
T COG1250 143 NPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTP 178 (307)
T ss_pred CCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCC
Confidence 55677788888888899998665
No 47
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.16 E-value=1.9e-10 Score=116.26 Aligned_cols=145 Identities=16% Similarity=0.184 Sum_probs=102.2
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-------C------CCCCcEEEcCCcccc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-------F------LRSPKIESGSDIAMS 243 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-------~------~~~~~v~~ttd~eal 243 (488)
..||+|||+|.||..+|..++..|+ +|+|+|++++.++.....+.+... . ....++..++|++++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 82 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF 82 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh
Confidence 4599999999999999999999998 999999999887764434332210 0 013467778899889
Q ss_pred CCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCchhHHHHHHHhcCCCCCcEE------
Q psy12825 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPVDVLTYISWKLSGFPKNRVI------ 316 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPvdi~t~~~~k~sg~p~~rVi------ 316 (488)
++||+||+++ .++.++.+++...++++| ++. .|++||.+.+....+...+..| +|++
T Consensus 83 ~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~-~il~snTS~~~~~~la~~~~~~-~r~~g~hf~~ 146 (286)
T PRK07819 83 ADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPD-AVLASNTSSIPIMKLAAATKRP-GRVLGLHFFN 146 (286)
T ss_pred CCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCC-cEEEECCCCCCHHHHHhhcCCC-ccEEEEecCC
Confidence 9999999996 588899999999999997 544 5668998874444443333332 3333
Q ss_pred ------------eecCChHHHHHHHHHHH-HhCCCC
Q psy12825 317 ------------GSGTNLDSMRFRVLLAQ-KLGLSP 339 (488)
Q Consensus 317 ------------G~gt~lds~R~~~~lA~-~Lgv~p 339 (488)
|.+|..++...-..+.. .+|..|
T Consensus 147 P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk~p 182 (286)
T PRK07819 147 PVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQV 182 (286)
T ss_pred CcccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCCc
Confidence 44555555444444444 466554
No 48
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.16 E-value=2.2e-10 Score=129.24 Aligned_cols=145 Identities=18% Similarity=0.210 Sum_probs=109.3
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-------CC------CCCcEEEcCCcccc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-------FL------RSPKIESGSDIAMS 243 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-------~~------~~~~v~~ttd~eal 243 (488)
..||+|||||.||.++|+.++..|+ +|+|+|++++.++.....+..... .. ...++..++|++++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 390 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGF 390 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh
Confidence 4689999999999999999999998 999999999887653333322110 00 13578888999999
Q ss_pred CCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh-HHHHHHHhcCCCCCcEE------
Q psy12825 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV-LTYISWKLSGFPKNRVI------ 316 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi-~t~~~~k~sg~p~~rVi------ 316 (488)
++||+||+++ .+++++++++..+++++||+. .|++||.+.+ +++++. .+.. |+|++
T Consensus 391 ~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~-~ilasNTSsl~i~~la~-~~~~-p~r~~g~Hff~ 453 (715)
T PRK11730 391 ERVDVVVEAV--------------VENPKVKAAVLAEVEQKVRED-TILASNTSTISISLLAK-ALKR-PENFCGMHFFN 453 (715)
T ss_pred cCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHHHHHh-hcCC-CccEEEEecCC
Confidence 9999999996 588999999999999998766 6779999884 455543 3333 34455
Q ss_pred ------------eecCChHHHHHHHHHHHHhCCCCC
Q psy12825 317 ------------GSGTNLDSMRFRVLLAQKLGLSPE 340 (488)
Q Consensus 317 ------------G~gt~lds~R~~~~lA~~Lgv~p~ 340 (488)
|-.|..++...-..+++.+|..|-
T Consensus 454 P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv 489 (715)
T PRK11730 454 PVHRMPLVEVIRGEKTSDETIATVVAYASKMGKTPI 489 (715)
T ss_pred cccccceEEeeCCCCCCHHHHHHHHHHHHHhCCceE
Confidence 445677776666677788887763
No 49
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.16 E-value=3.6e-10 Score=115.99 Aligned_cols=146 Identities=14% Similarity=0.189 Sum_probs=104.5
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC----C-----CCCCCcEEEcCCc-cccCC
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA----P-----FLRSPKIESGSDI-AMSEG 245 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~----~-----~~~~~~v~~ttd~-eal~d 245 (488)
+.+||+|||+|.||.++|..++..|+ +|+|+|++++.++.....+.+.. . .....++..++++ +++++
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~ 83 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD 83 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC
Confidence 34689999999999999999999998 99999999886654333222111 0 0112466777788 57899
Q ss_pred CcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEE---------
Q psy12825 246 SRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVI--------- 316 (488)
Q Consensus 246 ADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rVi--------- 316 (488)
||+||+++ .+|.++.+++...+.+++|.. .|+.||.+.+...-+...... |+|++
T Consensus 84 aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~-aIlaSnTS~l~~s~la~~~~~-p~R~~g~HffnP~~ 147 (321)
T PRK07066 84 ADFIQESA--------------PEREALKLELHERISRAAKPD-AIIASSTSGLLPTDFYARATH-PERCVVGHPFNPVY 147 (321)
T ss_pred CCEEEECC--------------cCCHHHHHHHHHHHHHhCCCC-eEEEECCCccCHHHHHHhcCC-cccEEEEecCCccc
Confidence 99999996 588899999999999998766 388999998654444443333 24454
Q ss_pred ---------eecCChHHHHHHHHHHHHhCCCC
Q psy12825 317 ---------GSGTNLDSMRFRVLLAQKLGLSP 339 (488)
Q Consensus 317 ---------G~gt~lds~R~~~~lA~~Lgv~p 339 (488)
|-.|..++...-..+.+.+|..|
T Consensus 148 ~~pLVEVv~g~~T~~e~~~~~~~f~~~lGk~p 179 (321)
T PRK07066 148 LLPLVEVLGGERTAPEAVDAAMGIYRALGMRP 179 (321)
T ss_pred cCceEEEeCCCCCCHHHHHHHHHHHHHcCCEe
Confidence 33566666555566666777655
No 50
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.14 E-value=2.8e-10 Score=128.33 Aligned_cols=146 Identities=16% Similarity=0.206 Sum_probs=109.5
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-------CC------CCCcEEEcCCccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-------FL------RSPKIESGSDIAM 242 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-------~~------~~~~v~~ttd~ea 242 (488)
+.+||+|||||.||.++|+.++..|+ +|+|+|++++.++.....+..... .. ...+++.++|+++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 389 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAG 389 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH
Confidence 45689999999999999999999998 999999999877653333322110 00 1357888899999
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh-HHHHHHHhcCCCCCcEE-----
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV-LTYISWKLSGFPKNRVI----- 316 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi-~t~~~~k~sg~p~~rVi----- 316 (488)
++|||+||+++ .+++++++++..+++++||+. .|++||.+.+ +++++ ..+.. |+|++
T Consensus 390 ~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~-~ilasnTS~l~i~~ia-~~~~~-p~r~ig~Hff 452 (714)
T TIGR02437 390 FDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVRED-AILASNTSTISISLLA-KALKR-PENFCGMHFF 452 (714)
T ss_pred hcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCC-cEEEECCCCCCHHHHH-hhcCC-cccEEEEecC
Confidence 99999999996 588999999999999998665 5779999884 44444 33332 34454
Q ss_pred -------------eecCChHHHHHHHHHHHHhCCCCC
Q psy12825 317 -------------GSGTNLDSMRFRVLLAQKLGLSPE 340 (488)
Q Consensus 317 -------------G~gt~lds~R~~~~lA~~Lgv~p~ 340 (488)
|-.|..++...-..+++.+|..|-
T Consensus 453 ~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv 489 (714)
T TIGR02437 453 NPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTPI 489 (714)
T ss_pred CCcccCceEeecCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 446667776666777888887763
No 51
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.12 E-value=3e-10 Score=128.36 Aligned_cols=145 Identities=19% Similarity=0.258 Sum_probs=110.2
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-------CC------CCCcEEEcCCccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-------FL------RSPKIESGSDIAM 242 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-------~~------~~~~v~~ttd~ea 242 (488)
+..||+|||||.||.++|+.++..|+ +|+|+|++++.++.....+.+... .. ...+++.++|+++
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 411 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSG 411 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 45689999999999999999999998 999999999887664433332210 00 1357888899999
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh-HHHHHHHhcCCCCCcEE-----
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV-LTYISWKLSGFPKNRVI----- 316 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi-~t~~~~k~sg~p~~rVi----- 316 (488)
+++||+||+++ .+|.++++++..+++++||+. .|++||.+.+ ++.++ ..+.. |+|++
T Consensus 412 ~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~-~ilasNTSsl~i~~la-~~~~~-p~r~ig~Hff 474 (737)
T TIGR02441 412 FKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPH-CIIASNTSALPIKDIA-AVSSR-PEKVIGMHYF 474 (737)
T ss_pred hccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHHHHH-hhcCC-ccceEEEecc
Confidence 99999999996 689999999999999998765 5679999884 44443 33333 34555
Q ss_pred -------------eecCChHHHHHHHHHHHHhCCCC
Q psy12825 317 -------------GSGTNLDSMRFRVLLAQKLGLSP 339 (488)
Q Consensus 317 -------------G~gt~lds~R~~~~lA~~Lgv~p 339 (488)
|-.|..++...-..+++.+|..|
T Consensus 475 ~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~p 510 (737)
T TIGR02441 475 SPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVV 510 (737)
T ss_pred CCcccCceEEEeCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 44577777766777888888766
No 52
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.10 E-value=5.6e-10 Score=125.71 Aligned_cols=146 Identities=19% Similarity=0.210 Sum_probs=108.3
Q ss_pred CCceEEEEecccchHHHHHHHHH-cCCCCeEEEEeCChhHHHHHHHHHhhcCC-------CC------CCCcEEEcCCcc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILT-QGIYSNFCLIDSNEDRCKGEMLDLQHGAP-------FL------RSPKIESGSDIA 241 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~-~~l~~el~L~Di~~e~l~g~~~dL~~~~~-------~~------~~~~v~~ttd~e 241 (488)
+.+||+|||||.||..+|+.++. .|+ +|+|+|++++.++.....+..... .. ...+|+.++|++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 380 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR 380 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH
Confidence 34689999999999999999985 788 999999999877654433322110 00 135788889999
Q ss_pred ccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh-HHHHHHHhcCCCCCcEE----
Q psy12825 242 MSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV-LTYISWKLSGFPKNRVI---- 316 (488)
Q Consensus 242 al~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi-~t~~~~k~sg~p~~rVi---- 316 (488)
+++|||+||+++ .++.++++++..+++++|++. .|++||.+.+ +++++. .... |+|++
T Consensus 381 ~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~-~ilasnTS~l~i~~la~-~~~~-p~r~~g~Hf 443 (699)
T TIGR02440 381 GFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAH-TIFASNTSSLPIGQIAA-AASR-PENVIGLHY 443 (699)
T ss_pred HhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCHHHHHH-hcCC-cccEEEEec
Confidence 999999999996 588999999999999998766 6779999884 444443 2322 34454
Q ss_pred --------------eecCChHHHHHHHHHHHHhCCCCC
Q psy12825 317 --------------GSGTNLDSMRFRVLLAQKLGLSPE 340 (488)
Q Consensus 317 --------------G~gt~lds~R~~~~lA~~Lgv~p~ 340 (488)
|-.|+.++...-..+.+.+|..|-
T Consensus 444 fnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv 481 (699)
T TIGR02440 444 FSPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTPI 481 (699)
T ss_pred CCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 445777676666777788887763
No 53
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.09 E-value=7e-10 Score=125.15 Aligned_cols=146 Identities=18% Similarity=0.234 Sum_probs=108.8
Q ss_pred CCceEEEEecccchHHHHHHHH-HcCCCCeEEEEeCChhHHHHHHHHHhhcCC-------CC------CCCcEEEcCCcc
Q psy12825 176 PDQKITVVGAGQVGMACTYSIL-TQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-------FL------RSPKIESGSDIA 241 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La-~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-------~~------~~~~v~~ttd~e 241 (488)
+.+||+|||||.||.++|..++ ..|+ +|+|+|++++.++.....+.+... .. ...+|+.++|++
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 385 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYR 385 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChH
Confidence 3578999999999999999999 7788 999999998877654333332210 00 135788889999
Q ss_pred ccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh-HHHHHHHhcCCCCCcEE----
Q psy12825 242 MSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV-LTYISWKLSGFPKNRVI---- 316 (488)
Q Consensus 242 al~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi-~t~~~~k~sg~p~~rVi---- 316 (488)
+++|||+||+++ .+|.++++++..++++++++. .|+.||.+.+ +++++. .... |+|++
T Consensus 386 ~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~-~ilasnTS~l~i~~la~-~~~~-p~r~ig~Hf 448 (708)
T PRK11154 386 GFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPH-TIFASNTSSLPIGQIAA-AAAR-PEQVIGLHY 448 (708)
T ss_pred HhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCC-cEEEECCCCCCHHHHHH-hcCc-ccceEEEec
Confidence 999999999996 689999999999999998655 5679999884 444443 3332 34444
Q ss_pred --------------eecCChHHHHHHHHHHHHhCCCCC
Q psy12825 317 --------------GSGTNLDSMRFRVLLAQKLGLSPE 340 (488)
Q Consensus 317 --------------G~gt~lds~R~~~~lA~~Lgv~p~ 340 (488)
|-.|+.++...-..+++.+|..|-
T Consensus 449 f~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv 486 (708)
T PRK11154 449 FSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTPI 486 (708)
T ss_pred CCccccCceEEEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 456777776666777788887763
No 54
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.99 E-value=4.4e-09 Score=105.84 Aligned_cols=124 Identities=19% Similarity=0.267 Sum_probs=86.8
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHH-------HHhhcCCCC------CCCcEEEcCCccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEML-------DLQHGAPFL------RSPKIESGSDIAM 242 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~-------dL~~~~~~~------~~~~v~~ttd~ea 242 (488)
+.+||+|||+|.||.+++..++..+. +|+++|+++++++.... .+.+..... ...++..++|+++
T Consensus 2 ~~~kI~VIG~G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 79 (282)
T PRK05808 2 GIQKIGVIGAGTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD 79 (282)
T ss_pred CccEEEEEccCHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 35689999999999999999999987 89999999988753211 111110000 1135677788888
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEe
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG 317 (488)
+++||+||+++ .++..+.+++.+++.+++++.. +++||.+.+-...+.+..+.| .|++|
T Consensus 80 ~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~-il~s~ts~~~~~~la~~~~~~-~r~ig 138 (282)
T PRK05808 80 LKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEA-ILATNTSSLSITELAAATKRP-DKVIG 138 (282)
T ss_pred hccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCc-EEEECCCCCCHHHHHHhhCCC-cceEE
Confidence 99999999996 4667788899999999876542 348888875444444444333 34554
No 55
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.96 E-value=3.1e-09 Score=115.35 Aligned_cols=145 Identities=19% Similarity=0.185 Sum_probs=103.7
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC----CCC---------CCCcEEEcCCccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA----PFL---------RSPKIESGSDIAM 242 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~----~~~---------~~~~v~~ttd~ea 242 (488)
+.+||+|||+|.||..+|..++..|+ +|++||++++.++.....+.+.. ... ...+++.++|+++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 81 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA 81 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH
Confidence 45789999999999999999999998 99999999998865433322211 000 1245777889988
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhH-HHHHHHhcCCCCCcEE-----
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVL-TYISWKLSGFPKNRVI----- 316 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~-t~~~~k~sg~p~~rVi----- 316 (488)
+++||+||+++ .++..+.+.+...+++++|+. .|++||.+.+- ++++.. ... |.|++
T Consensus 82 l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~-~IlasnTStl~i~~iA~~-~~~-p~r~~G~HFf 144 (503)
T TIGR02279 82 LADAGLVIEAI--------------VENLEVKKALFAQLEELCPAD-TIIASNTSSLSITAIAAG-LAR-PERVAGLHFF 144 (503)
T ss_pred hCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCC-eEEEECCCCCCHHHHHHh-cCc-ccceEEEecc
Confidence 99999999995 577889999999999998766 56789988743 333322 211 12222
Q ss_pred -------------eecCChHHHHHHHHHHHHhCCCC
Q psy12825 317 -------------GSGTNLDSMRFRVLLAQKLGLSP 339 (488)
Q Consensus 317 -------------G~gt~lds~R~~~~lA~~Lgv~p 339 (488)
|-.|.-++...-..+.+.+|..|
T Consensus 145 ~Papv~~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~p 180 (503)
T TIGR02279 145 NPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQP 180 (503)
T ss_pred CccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCee
Confidence 43456666666677778888766
No 56
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.95 E-value=7.5e-09 Score=104.50 Aligned_cols=125 Identities=18% Similarity=0.251 Sum_probs=86.7
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC-------CCC-------CCCcEEEcCCcc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA-------PFL-------RSPKIESGSDIA 241 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~-------~~~-------~~~~v~~ttd~e 241 (488)
+.+||+|||+|.||.++|..++..|. +|+++|++++.++.....+.+.. ... ...++..++|++
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~ 79 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLA 79 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHH
Confidence 34699999999999999999999887 89999999887765443322110 000 024667788885
Q ss_pred -ccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEee
Q psy12825 242 -MSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGS 318 (488)
Q Consensus 242 -al~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~ 318 (488)
++++||+||+++ .++.++++++.+++.+++++. .|+++|.+......+.+.... +.|++|+
T Consensus 80 ~a~~~aDlVieav--------------pe~~~~k~~~~~~l~~~~~~~-~ii~sntSt~~~~~~~~~~~~-~~r~vg~ 141 (287)
T PRK08293 80 EAVKDADLVIEAV--------------PEDPEIKGDFYEELAKVAPEK-TIFATNSSTLLPSQFAEATGR-PEKFLAL 141 (287)
T ss_pred HHhcCCCEEEEec--------------cCCHHHHHHHHHHHHhhCCCC-CEEEECcccCCHHHHHhhcCC-cccEEEE
Confidence 699999999996 466778899999999987655 345678776433233333332 3455543
No 57
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.92 E-value=4.8e-09 Score=114.08 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=102.2
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC----CC---------CCCcEEEcCCccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP----FL---------RSPKIESGSDIAM 242 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~----~~---------~~~~v~~ttd~ea 242 (488)
+..||+|||+|.||..+|..++..|+ +|+++|++++.++.....+.+... .. ...++..++++++
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 83 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD 83 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 34689999999999999999999998 999999999988764333332110 00 1245777889988
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEe-----
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIG----- 317 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG----- 317 (488)
+++||+||+++ .++.++.+.+...+++++++. .|++||.+.+-...+...... |+|++|
T Consensus 84 ~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~-ailasntStl~i~~la~~~~~-p~r~~G~hff~ 147 (507)
T PRK08268 84 LADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPD-CILATNTSSLSITAIAAALKH-PERVAGLHFFN 147 (507)
T ss_pred hCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCC-cEEEECCCCCCHHHHHhhcCC-cccEEEEeecC
Confidence 99999999995 578889999999999998554 456788776322223222222 233333
Q ss_pred -------------ecCChHHHHHHHHHHHHhCCCC
Q psy12825 318 -------------SGTNLDSMRFRVLLAQKLGLSP 339 (488)
Q Consensus 318 -------------~gt~lds~R~~~~lA~~Lgv~p 339 (488)
-.|.-++...-..+.+.+|..|
T Consensus 148 Pa~v~~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~p 182 (507)
T PRK08268 148 PVPLMKLVEVVSGLATDPAVADALYALARAWGKTP 182 (507)
T ss_pred CcccCeeEEEeCCCCCCHHHHHHHHHHHHHcCCce
Confidence 2356666666667778888766
No 58
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.91 E-value=1.4e-08 Score=102.63 Aligned_cols=108 Identities=17% Similarity=0.259 Sum_probs=77.9
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC-------CCC------CCCcEEEcCCcc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA-------PFL------RSPKIESGSDIA 241 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~-------~~~------~~~~v~~ttd~e 241 (488)
++.+||+|||+|.||..++..++..|. +|+++|++++.++.....+.... .+. ...++..+++++
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 79 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE 79 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH
Confidence 345799999999999999999999987 89999999988765443332210 000 013466777888
Q ss_pred ccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh
Q psy12825 242 MSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV 299 (488)
Q Consensus 242 al~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi 299 (488)
++++||+||+++ .++..+.+.+.+.|.+++++.. +++||.+.+
T Consensus 80 ~~~~aD~Vieav--------------pe~~~~k~~~~~~l~~~~~~~~-ii~s~ts~~ 122 (292)
T PRK07530 80 DLADCDLVIEAA--------------TEDETVKRKIFAQLCPVLKPEA-ILATNTSSI 122 (292)
T ss_pred HhcCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCc-EEEEcCCCC
Confidence 899999999996 3455677777888888865432 335777663
No 59
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.90 E-value=1.3e-08 Score=102.86 Aligned_cols=108 Identities=14% Similarity=0.249 Sum_probs=78.4
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh-------cC---CCC------CCCcEEEcCC
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH-------GA---PFL------RSPKIESGSD 239 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~-------~~---~~~------~~~~v~~ttd 239 (488)
+.+||+|||+|.||..++..++..|. +|+++|++++.++.....+.+ .. ... ...++..+++
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 79 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTS 79 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCC
Confidence 34689999999999999999999987 899999999887643332221 10 000 0124556677
Q ss_pred ccccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhH
Q psy12825 240 IAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVL 300 (488)
Q Consensus 240 ~eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~ 300 (488)
++++++||+||+++ ..+.++++++.+.+++++++.. |++||...+.
T Consensus 80 ~~~~~~aDlVieav--------------~e~~~~k~~~~~~l~~~~~~~~-il~S~tsg~~ 125 (291)
T PRK06035 80 YESLSDADFIVEAV--------------PEKLDLKRKVFAELERNVSPET-IIASNTSGIM 125 (291)
T ss_pred HHHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCe-EEEEcCCCCC
Confidence 78899999999996 3566778888999999876542 3468877643
No 60
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.88 E-value=1.9e-08 Score=104.28 Aligned_cols=118 Identities=18% Similarity=0.229 Sum_probs=84.5
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC--------C-CCCCCcEEEcCCcc-ccCCCc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA--------P-FLRSPKIESGSDIA-MSEGSR 247 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~--------~-~~~~~~v~~ttd~e-al~dAD 247 (488)
|||+|||.|.||...+..|+..|. +|+++|+++++.+.+.....-+. . .....++.+|+|++ +++++|
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad 78 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDAD 78 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCC
Confidence 799999999999999999998886 99999999987765322111111 0 11356799999994 799999
Q ss_pred EEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEE--eCCchhHHHH
Q psy12825 248 IVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLII--SNPVDVLTYI 303 (488)
Q Consensus 248 iVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~--TNPvdi~t~~ 303 (488)
++||++|.|.++.. ..++..+...++.|.+..+...+|+. |-|+....++
T Consensus 79 v~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v 130 (414)
T COG1004 79 VVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEV 130 (414)
T ss_pred EEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHH
Confidence 99999998877521 13456777778888877665334444 5687754443
No 61
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.84 E-value=3.6e-08 Score=99.88 Aligned_cols=107 Identities=17% Similarity=0.253 Sum_probs=76.6
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC----C---CC------CCCcEEEcCCccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA----P---FL------RSPKIESGSDIAM 242 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~----~---~~------~~~~v~~ttd~ea 242 (488)
+.+||+|||+|.||..+|..|+..|. +|+++|++++.++.....+.+.. . .. ....+..++++++
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEE 80 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHH
Confidence 34689999999999999999999886 99999999987764333222110 0 00 0124556667888
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV 299 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi 299 (488)
+++||+||+++ .++..+.+.+...+.+++++. .|++||.+.+
T Consensus 81 ~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~-~il~s~tS~i 122 (295)
T PLN02545 81 LRDADFIIEAI--------------VESEDLKKKLFSELDRICKPS-AILASNTSSI 122 (295)
T ss_pred hCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCC-cEEEECCCCC
Confidence 99999999996 456677888888888876544 2455777664
No 62
>KOG2304|consensus
Probab=98.79 E-value=5.5e-09 Score=100.45 Aligned_cols=149 Identities=19% Similarity=0.307 Sum_probs=102.6
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC----C--C---C---------CCCcEE
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA----P--F---L---------RSPKIE 235 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~----~--~---~---------~~~~v~ 235 (488)
..+.+.|+|||||.||+++|+..+..|+ .|.|+|.+++.+.....-++... . + + ...++.
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~ 85 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK 85 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH
Confidence 3456789999999999999999999999 89999999988765444443321 0 0 0 133455
Q ss_pred EcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh-HHHHHH---H---h
Q psy12825 236 SGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV-LTYISW---K---L 307 (488)
Q Consensus 236 ~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi-~t~~~~---k---~ 307 (488)
.++|. .++.|||+||+++ .+|+++.++++++|++.|+.. .|+.||.+.+ ++.++. + +
T Consensus 86 ~~tnv~~~v~dadliiEAi--------------vEn~diK~~lF~~l~~~ak~~-~il~tNTSSl~lt~ia~~~~~~srf 150 (298)
T KOG2304|consen 86 TSTNVSDAVSDADLIIEAI--------------VENLDIKRKLFKDLDKIAKSS-TILATNTSSLSLTDIASATQRPSRF 150 (298)
T ss_pred HcCCHHHhhhhhHHHHHHH--------------HHhHHHHHHHHHHHHhhcccc-eEEeecccceeHHHHHhhccChhhh
Confidence 56776 5788999999984 699999999999999999876 6789999873 444432 1 1
Q ss_pred cC---CCC-------CcEEeecCChHHHHHHHHHHHHhCCCC
Q psy12825 308 SG---FPK-------NRVIGSGTNLDSMRFRVLLAQKLGLSP 339 (488)
Q Consensus 308 sg---~p~-------~rViG~gt~lds~R~~~~lA~~Lgv~p 339 (488)
.| |+| +-|-+--|+-++..+-..+++.+|..|
T Consensus 151 ~GlHFfNPvPvMKLvEVir~~~TS~eTf~~l~~f~k~~gKtt 192 (298)
T KOG2304|consen 151 AGLHFFNPVPVMKLVEVIRTDDTSDETFNALVDFGKAVGKTT 192 (298)
T ss_pred ceeeccCCchhHHHhhhhcCCCCCHHHHHHHHHHHHHhCCCc
Confidence 22 111 122233345555555556666666554
No 63
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.71 E-value=7.5e-08 Score=97.27 Aligned_cols=104 Identities=18% Similarity=0.303 Sum_probs=75.0
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-------CC------CCCcEEEcCCc-ccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-------FL------RSPKIESGSDI-AMS 243 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-------~~------~~~~v~~ttd~-eal 243 (488)
+||+|||+|.||..+|..|+..+. +|+++|++++.++.....+..... .. ...++..++++ +++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 79 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV 79 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence 589999999999999999999987 899999999888765433222100 00 02246667787 579
Q ss_pred CCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
++||+||+++ .++..+.+.+...+.+++++. .++++|.+.
T Consensus 80 ~~aD~Vi~av--------------pe~~~~k~~~~~~l~~~~~~~-~il~~~tSt 119 (288)
T PRK09260 80 ADADLVIEAV--------------PEKLELKKAVFETADAHAPAE-CYIATNTST 119 (288)
T ss_pred cCCCEEEEec--------------cCCHHHHHHHHHHHHhhCCCC-cEEEEcCCC
Confidence 9999999996 345567777778888887554 244566655
No 64
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.62 E-value=2.5e-07 Score=94.26 Aligned_cols=124 Identities=15% Similarity=0.226 Sum_probs=80.9
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCC--------CCCCcEEEcCCcc-ccCCCc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF--------LRSPKIESGSDIA-MSEGSR 247 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~--------~~~~~v~~ttd~e-al~dAD 247 (488)
.+||+|||+|.||.+++..|+..+. +|+++|++++.++.....+.+.... ....++..++|++ ++++||
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aD 81 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGAD 81 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCC
Confidence 4689999999999999999998887 8999999998877654433221100 0112355667775 689999
Q ss_pred EEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEee
Q psy12825 248 IVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGS 318 (488)
Q Consensus 248 iVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~ 318 (488)
+||+++ .......+++...+..++++. .+++||.+.+-...+.+... .+.+++|+
T Consensus 82 lVi~av--------------~~~~~~~~~v~~~l~~~~~~~-~ii~s~tsg~~~~~l~~~~~-~~~~~ig~ 136 (311)
T PRK06130 82 LVIEAV--------------PEKLELKRDVFARLDGLCDPD-TIFATNTSGLPITAIAQAVT-RPERFVGT 136 (311)
T ss_pred EEEEec--------------cCcHHHHHHHHHHHHHhCCCC-cEEEECCCCCCHHHHHhhcC-CcccEEEE
Confidence 999996 233445667777777776544 34557766643333333222 13456655
No 65
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.52 E-value=6.9e-07 Score=97.14 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=80.1
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh-------cC--CCCCCCcEEEcCCc-cccCCC
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH-------GA--PFLRSPKIESGSDI-AMSEGS 246 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~-------~~--~~~~~~~v~~ttd~-eal~dA 246 (488)
.+||+|||+|.||.++|..|+..|+ +|+++|+++++++.....+.. .. ......++..++|+ +++++|
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~a 81 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGA 81 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCC
Confidence 3589999999999999999999998 899999999877653221110 00 00112246667787 579999
Q ss_pred cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHH
Q psy12825 247 RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYIS 304 (488)
Q Consensus 247 DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~ 304 (488)
|+||+++ .++.++.+.+...+..++|+. .|+.||.+++....+
T Consensus 82 D~Vieav--------------pe~~~vk~~l~~~l~~~~~~~-~iI~SsTsgi~~s~l 124 (495)
T PRK07531 82 DWIQESV--------------PERLDLKRRVLAEIDAAARPD-ALIGSSTSGFLPSDL 124 (495)
T ss_pred CEEEEcC--------------cCCHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHHHH
Confidence 9999995 466677888888888887765 467888877443333
No 66
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.49 E-value=5.9e-07 Score=85.39 Aligned_cols=148 Identities=18% Similarity=0.168 Sum_probs=81.6
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC---------CCCCCcEEEcCCcc-ccCCCc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP---------FLRSPKIESGSDIA-MSEGSR 247 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~---------~~~~~~v~~ttd~e-al~dAD 247 (488)
|||+|||.|.+|..+|..|+..|+ +|+-+|+|+++.+.+.....+... .....++..++|++ ++++||
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~--~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~ad 78 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGH--QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDAD 78 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTS--EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-S
T ss_pred CEEEEECCCcchHHHHHHHHhCCC--EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccc
Confidence 799999999999999999999998 999999999877654322222110 00146888888885 599999
Q ss_pred EEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEe-CCchhHH----HHHHHhcCCCCCcEEeecCC
Q psy12825 248 IVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIIS-NPVDVLT----YISWKLSGFPKNRVIGSGTN 321 (488)
Q Consensus 248 iVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~T-NPvdi~t----~~~~k~sg~p~~rViG~gt~ 321 (488)
++|++++.|...+.+ -+...+....+.|.++ .++.++|+=| =|++... .++.+.++.. .-|++.-+
T Consensus 79 v~~I~VpTP~~~~~~------~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~--~~f~la~~ 150 (185)
T PF03721_consen 79 VVFICVPTPSDEDGS------PDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKK--EDFHLAYS 150 (185)
T ss_dssp EEEE----EBETTTS------BETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTT--TCEEEEE-
T ss_pred eEEEecCCCccccCC------ccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccc--cCCeEEEC
Confidence 999999888665321 1233455555555555 3455544444 4766544 4555555432 22445344
Q ss_pred hHHHHHHHHHHHHh
Q psy12825 322 LDSMRFRVLLAQKL 335 (488)
Q Consensus 322 lds~R~~~~lA~~L 335 (488)
.|-.+--+.+.+..
T Consensus 151 PErl~~G~a~~d~~ 164 (185)
T PF03721_consen 151 PERLREGRAIEDFR 164 (185)
T ss_dssp -----TTSHHHHHH
T ss_pred CCccCCCCcchhcc
Confidence 44333334444444
No 67
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.47 E-value=8.6e-07 Score=90.48 Aligned_cols=106 Identities=17% Similarity=0.212 Sum_probs=74.4
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHH-------HhhcCCC------CCCCcEEEcCCcc-c
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLD-------LQHGAPF------LRSPKIESGSDIA-M 242 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~d-------L~~~~~~------~~~~~v~~ttd~e-a 242 (488)
.+||+|||+|.||.+++..|+..|. +|++||++++.++..... +.+.... ....++..++|++ +
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a 79 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADA 79 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHh
Confidence 3589999999999999999999987 899999998766643221 1111000 0123466777884 7
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV 299 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi 299 (488)
+++||+||++. ..+....+.+...+.+.+++..+| .||....
T Consensus 80 ~~~ad~Vi~av--------------pe~~~~k~~~~~~l~~~~~~~~ii-~ssts~~ 121 (308)
T PRK06129 80 VADADYVQESA--------------PENLELKRALFAELDALAPPHAIL-ASSTSAL 121 (308)
T ss_pred hCCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCcceE-EEeCCCC
Confidence 89999999995 344556677777788877766444 5776553
No 68
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.43 E-value=6.4e-06 Score=80.01 Aligned_cols=104 Identities=11% Similarity=0.160 Sum_probs=70.4
Q ss_pred ceEEEEe-cccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCC-CCCCcEEEcCCccccCCCcEEEEeccc
Q psy12825 178 QKITVVG-AGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF-LRSPKIESGSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 178 ~KIaIIG-AG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~-~~~~~v~~ttd~eal~dADiVIitag~ 255 (488)
|||+||| +|.||.+++..|+..+. +|.++|+++++++....+..+.... ....++..+++.++++++|+||+++.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp- 77 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVP- 77 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECC-
Confidence 5899997 79999999999998885 8999999998887766555432210 01123333444578999999999962
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV 299 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi 299 (488)
...+.++.+.+...-++.++|-++||.+.
T Consensus 78 ---------------~~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 78 ---------------WDHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred ---------------HHHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 11233444444443334678889999753
No 69
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.40 E-value=8.4e-07 Score=81.87 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=76.1
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCC---CCCcEEEcCCc-cccCCCcEEEEecc
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL---RSPKIESGSDI-AMSEGSRIVIITAG 254 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~---~~~~v~~ttd~-eal~dADiVIitag 254 (488)
||+|+|||..|+++|..|+.++. +|.||+++++.++.+...-.....++ ....+..++|+ +++++||+||++..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavP 78 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVP 78 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-
T ss_pred CEEEECcCHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEeccc
Confidence 89999999999999999999996 99999999876654333222111111 23467778898 58999999999952
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCC-CcEEEEEeC-----CchhHHHHHHHhcCC
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSP-DCILLIISN-----PVDVLTYISWKLSGF 310 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p-~a~vIv~TN-----Pvdi~t~~~~k~sg~ 310 (488)
....++++++|..+-+ +..+|+++- ..-.+.+++.+..+.
T Consensus 79 ----------------s~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~ 124 (157)
T PF01210_consen 79 ----------------SQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPI 124 (157)
T ss_dssp ----------------GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSS
T ss_pred ----------------HHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhh
Confidence 2245788888888854 444444431 122667777666544
No 70
>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases. It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.
Probab=98.36 E-value=4.3e-06 Score=82.10 Aligned_cols=72 Identities=18% Similarity=0.355 Sum_probs=56.2
Q ss_pred CCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCc-CCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHH
Q psy12825 403 GYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGH-HGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAAT 479 (488)
Q Consensus 403 g~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~-ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~ 479 (488)
++..|+ ..++++|.++.+.++.+||.|+|. .|+|+|.++++||+|+++|++++...+||+..+++++.....
T Consensus 134 ~~~~~a-----~~~i~~i~~~~~~~~~vNv~N~G~I~nLp~davVEvp~~v~~~Gi~P~~~g~lP~~~~~li~~~~~~ 206 (232)
T PF11975_consen 134 GSGEYA-----EAAIEAIYNDKPKRFVVNVPNNGAIPNLPDDAVVEVPCYVDGDGIHPVAVGPLPPAIAGLIQQVKAY 206 (232)
T ss_dssp TTSCHH-----HHHHHHHHHSSEEEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB-SB---HHHHHHHHHHHHH
T ss_pred cccchH-----HHHHHHHhcCCCeEEEEECCCCCccCCCCCCcEEEEEEEEcCCeeEeccCCCCCHHHHHHHHHHHHH
Confidence 445554 457777799999999999999998 899999999999999999999988899999999988765443
No 71
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.27 E-value=3.4e-06 Score=91.14 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=82.0
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-----C---CCCCcEEEcCCc-cccCCCc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-----F---LRSPKIESGSDI-AMSEGSR 247 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-----~---~~~~~v~~ttd~-eal~dAD 247 (488)
+|||+|||+|.||..+|..|+..|...+|+.+|+++++++.+..+...... + ....++..++|+ +++++||
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 479999999999999999999987545899999999887764333221110 0 012347788887 4799999
Q ss_pred EEEEecccccCCCc-chHhhHhhhHHHHHHHHHHHhccCCCcEEEEE--eCCchhH
Q psy12825 248 IVIITAGVRSLVGE-TRLQLVDRNVKIFKDLIPKIAKGSPDCILLII--SNPVDVL 300 (488)
Q Consensus 248 iVIitag~~~k~G~-~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~--TNPvdi~ 300 (488)
++|++++.|..... .. + -.-++..+.+.++.|.++.+++.+|+. |-|....
T Consensus 81 vi~I~V~TP~~~~g~~~-~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt 134 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGA-G-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (473)
T ss_pred EEEEEeCCCCCCCCCcC-C-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChH
Confidence 99999998864321 00 0 012345677777777777554444443 5677643
No 72
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.20 E-value=1.7e-05 Score=81.30 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=83.4
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCC---CCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL---RSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~---~~~~v~~ttd~-eal~dADiVIit 252 (488)
++||+|||+|+-|+++|..|+.++. +|+|+.++++..+.+..+-.....++ ....+..++|. +++++||+||+.
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~--~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~a 78 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGH--EVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIA 78 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCC--eeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEE
Confidence 4799999999999999999999995 99999999886654333211111121 35667788898 578899999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEe-----CCchhHHHHHHHhcC
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIIS-----NPVDVLTYISWKLSG 309 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~T-----NPvdi~t~~~~k~sg 309 (488)
.. ...++++++++..+ .++..++.+| ++...+++++.+..+
T Consensus 79 vP----------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~ 125 (329)
T COG0240 79 VP----------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELP 125 (329)
T ss_pred CC----------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcC
Confidence 52 23667777777644 5677788887 234478888877654
No 73
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.09 E-value=7.3e-06 Score=68.65 Aligned_cols=94 Identities=15% Similarity=0.302 Sum_probs=65.8
Q ss_pred eEEEEecccchHHHHHHHHHcCC-CCeEEEE-eCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecccc
Q psy12825 179 KITVVGAGQVGMACTYSILTQGI-YSNFCLI-DSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVR 256 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l-~~el~L~-Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~ 256 (488)
||+|||+|.||.+++..|+..++ ..+|.++ ++++++++....++. ..+...+..+++++||+||+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~--------~~~~~~~~~~~~~~advvilav~-- 70 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG--------VQATADDNEEAAQEADVVILAVK-- 70 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT--------TEEESEEHHHHHHHTSEEEE-S---
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc--------cccccCChHHhhccCCEEEEEEC--
Confidence 79999999999999999999883 3488866 999988876544432 12222223467889999999972
Q ss_pred cCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 257 SLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 257 ~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
| ..+.++++.+....++.++|-++||
T Consensus 71 --p------------~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 --P------------QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp --G------------GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred --H------------HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 1 1345666666445677878877775
No 74
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.04 E-value=4.7e-05 Score=80.49 Aligned_cols=118 Identities=17% Similarity=0.140 Sum_probs=73.7
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-------CCCCCcEEEcCCc-cccCCCcEE
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-------FLRSPKIESGSDI-AMSEGSRIV 249 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-------~~~~~~v~~ttd~-eal~dADiV 249 (488)
|||+|||+|.||..+|..++. |+ +|+.||+++++++........... .....++..++++ ++.++||+|
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~--~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~v 77 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NH--EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYV 77 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CC--cEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEE
Confidence 589999999999999987774 65 899999999988765432222110 0012356566665 568999999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEE-eCCchhHHHH
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLII-SNPVDVLTYI 303 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~-TNPvdi~t~~ 303 (488)
|+++..+...... .-++..+.+.++.|.+..|+.++|+- |-|.+..-++
T Consensus 78 ii~Vpt~~~~k~~-----~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l 127 (388)
T PRK15057 78 IIATPTDYDPKTN-----YFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAM 127 (388)
T ss_pred EEeCCCCCccCCC-----CcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHH
Confidence 9998665321111 12334445555555554556655555 4566644443
No 75
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.99 E-value=5e-05 Score=78.05 Aligned_cols=134 Identities=11% Similarity=0.104 Sum_probs=86.7
Q ss_pred chHHHHHHHHHcCCCCeEEEEeCChhH-------HHHHHHHHhh----cCC---CC------CCCcEEEcCC--c-cccC
Q psy12825 188 VGMACTYSILTQGIYSNFCLIDSNEDR-------CKGEMLDLQH----GAP---FL------RSPKIESGSD--I-AMSE 244 (488)
Q Consensus 188 vG~~ia~~La~~~l~~el~L~Di~~e~-------l~g~~~dL~~----~~~---~~------~~~~v~~ttd--~-eal~ 244 (488)
||.++|..++..|+ +|+|+|++++. ++.....+.+ ... .. ...++..+++ + ++++
T Consensus 1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~ 78 (314)
T PRK08269 1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALA 78 (314)
T ss_pred CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhc
Confidence 68899999999998 99999998853 2222222211 100 00 1346766654 3 6799
Q ss_pred CCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEE--------
Q psy12825 245 GSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVI-------- 316 (488)
Q Consensus 245 dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rVi-------- 316 (488)
+||+||+++ .++.++.+++..++.+.++.. .|+.||.+.+....+.+.... |+|++
T Consensus 79 ~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~-~ilaSntS~~~~~~la~~~~~-p~r~~g~Hf~~Pp 142 (314)
T PRK08269 79 DADLVFEAV--------------PEVLDAKREALRWLGRHVDAD-AIIASTTSTFLVTDLQRHVAH-PERFLNAHWLNPA 142 (314)
T ss_pred cCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCC-cEEEEccccCCHHHHHhhcCC-cccEEEEecCCcc
Confidence 999999996 588899999999999997654 334999887544333333322 22333
Q ss_pred ----------eecCChHHHHHHHHHHHHhCCCC
Q psy12825 317 ----------GSGTNLDSMRFRVLLAQKLGLSP 339 (488)
Q Consensus 317 ----------G~gt~lds~R~~~~lA~~Lgv~p 339 (488)
|-+|.-++...-..+.+.+|..|
T Consensus 143 ~~~~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~ 175 (314)
T PRK08269 143 YLMPLVEVSPSDATDPAVVDRLAALLERIGKVP 175 (314)
T ss_pred ccCceEEEeCCCCCCHHHHHHHHHHHHHcCCcE
Confidence 45666666555566667777655
No 76
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.98 E-value=9.8e-05 Score=76.62 Aligned_cols=114 Identities=12% Similarity=0.182 Sum_probs=77.1
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCC----CCCcEEEcCCc-cccCCCcEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL----RSPKIESGSDI-AMSEGSRIV 249 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~----~~~~v~~ttd~-eal~dADiV 249 (488)
..++||+|||+|.+|..++..|+..+ +++++..+++..+.+..+-....... ...++..++|+ ++++++|+|
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g---~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlV 81 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG---PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVV 81 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC---CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEE
Confidence 35689999999999999999999887 47888888876654432211111011 12346667777 578999999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCch-----hHHHHHHHh
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVD-----VLTYISWKL 307 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvd-----i~t~~~~k~ 307 (488)
|+++. ...++++++.+..+ .++..+|.++|-.+ .+.+++.+.
T Consensus 82 ilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~ 129 (341)
T PRK12439 82 VMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEV 129 (341)
T ss_pred EEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHH
Confidence 99962 23556666777665 46677888888765 356666654
No 77
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.98 E-value=4.8e-05 Score=76.70 Aligned_cols=107 Identities=19% Similarity=0.187 Sum_probs=67.5
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRS 257 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~~ 257 (488)
|||+|||+|.+|..++..|+..|. +|.++|++++.++....+-...........+..+++.++++++|+||++....
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~~- 77 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGH--DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVILAVKAY- 77 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--eEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEecccc-
Confidence 589999999999999999998876 89999997776654322110000000001112234555568999999996211
Q ss_pred CCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCchhHHH
Q psy12825 258 LVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVDVLTY 302 (488)
Q Consensus 258 k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvdi~t~ 302 (488)
-..++.+.+..+ .++..||...|.++....
T Consensus 78 ---------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~ 108 (304)
T PRK06522 78 ---------------QLPAALPSLAPLLGPDTPVLFLQNGVGHLEE 108 (304)
T ss_pred ---------------cHHHHHHHHhhhcCCCCEEEEecCCCCcHHH
Confidence 124444455544 466788888998875443
No 78
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.96 E-value=3.4e-05 Score=71.51 Aligned_cols=64 Identities=19% Similarity=0.323 Sum_probs=48.0
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
++||++||.|.||+.++..|+..++ +|+.||+++++++.. .+. ......++ +.+++||+||.+.
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~--~v~~~d~~~~~~~~~----~~~-------g~~~~~s~~e~~~~~dvvi~~v 65 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGY--EVTVYDRSPEKAEAL----AEA-------GAEVADSPAEAAEQADVVILCV 65 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTT--EEEEEESSHHHHHHH----HHT-------TEEEESSHHHHHHHBSEEEE-S
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCC--eEEeeccchhhhhhh----HHh-------hhhhhhhhhhHhhcccceEeec
Confidence 5799999999999999999999998 899999998776643 221 13445566 5688999999985
No 79
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.93 E-value=7.6e-05 Score=76.06 Aligned_cols=104 Identities=13% Similarity=0.273 Sum_probs=69.8
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC---CCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP---FLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~---~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
++||+|||+|.||..++..|+..+. +|.++|++++.++....+..+... ......+..++++ +.+++||+||++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~ 78 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVA 78 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence 4699999999999999999998887 899999998776654433111100 0011134455666 467899999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCch
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVD 298 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvd 298 (488)
... ..+.++.+.+..+ .|+.++|..+|.++
T Consensus 79 v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 79 VPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred CCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 621 1334555555555 46777888887654
No 80
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.91 E-value=7.3e-05 Score=76.77 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=69.3
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC---CCCCCCcEEEcCCcc-cc-CCCcEEEEe
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA---PFLRSPKIESGSDIA-MS-EGSRIVIIT 252 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~---~~~~~~~v~~ttd~e-al-~dADiVIit 252 (488)
|||+|||||.+|..++..|+..+. +|.|++++++.++.+..+-.+.. .......+..++|++ ++ .++|+||++
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~--~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiia 78 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKI--SVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILA 78 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC--eEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEE
Confidence 589999999999999999998886 89999998876654433211111 011123455666764 55 589999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhc-c-CCCcEEEEEeCCch
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAK-G-SPDCILLIISNPVD 298 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~-~-~p~a~vIv~TNPvd 298 (488)
+. ...+.++++.+.. + .++..++..+|=.+
T Consensus 79 vk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 79 VP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred eC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 62 2234555666655 4 56777788888663
No 81
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.89 E-value=0.00013 Score=75.85 Aligned_cols=115 Identities=12% Similarity=0.154 Sum_probs=74.0
Q ss_pred eEEEEecccchHHHHHHHHHcC------CCCeEEEEeCC-----hhHHHHHHHHHhhcCCCC---CCCcEEEcCCc-ccc
Q psy12825 179 KITVVGAGQVGMACTYSILTQG------IYSNFCLIDSN-----EDRCKGEMLDLQHGAPFL---RSPKIESGSDI-AMS 243 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~------l~~el~L~Di~-----~e~l~g~~~dL~~~~~~~---~~~~v~~ttd~-eal 243 (488)
||+|||+|+.|+++|..|+.++ +..+|.||.++ ++..+.+..+..+...++ ....+..++|+ +++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 7999999999999999999876 33599999983 332222211111111111 23467788887 578
Q ss_pred CCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEe---CC----chhHHHHHHHhcC
Q psy12825 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIIS---NP----VDVLTYISWKLSG 309 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~T---NP----vdi~t~~~~k~sg 309 (488)
++||+||+++. ...++++++.|..+ .++..+|.++ .+ .-.+++++.+..+
T Consensus 81 ~~ADiIIlAVP----------------s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~ 138 (342)
T TIGR03376 81 KGADILVFVIP----------------HQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELG 138 (342)
T ss_pred hcCCEEEEECC----------------hHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhC
Confidence 99999999951 23566777777765 3455566665 22 2366777766553
No 82
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.88 E-value=0.00015 Score=69.84 Aligned_cols=95 Identities=18% Similarity=0.321 Sum_probs=66.6
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC-hhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN-EDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~-~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~ 255 (488)
+|+|+|+|+|.+|.+++..++..+. ||.+-..+ ++.++..+..+. ..++.....++.+.||+||.++.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~l~--------~~i~~~~~~dA~~~aDVVvLAVP- 69 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAALG--------PLITGGSNEDAAALADVVVLAVP- 69 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHhhc--------cccccCChHHHHhcCCEEEEecc-
Confidence 5799999999999999999999997 88888664 444544443332 23555556689999999999963
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCc
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPv 297 (488)
+.. +.++.+++...-.+-++|-.|||.
T Consensus 70 -----------~~a----~~~v~~~l~~~~~~KIvID~tnp~ 96 (211)
T COG2085 70 -----------FEA----IPDVLAELRDALGGKIVIDATNPI 96 (211)
T ss_pred -----------HHH----HHhHHHHHHHHhCCeEEEecCCCc
Confidence 222 334444444433366788899995
No 83
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.88 E-value=9e-05 Score=76.23 Aligned_cols=100 Identities=10% Similarity=0.149 Sum_probs=66.1
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC---CCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA---PFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~---~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
+|||+|||+|.||..++..|+..+. +|++||++++.++.....-.+.. ......++..++++ ++++++|+||++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~ 81 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGV--PVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVA 81 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEE
Confidence 5799999999999999999998887 89999998877665433211111 01112235556676 568999999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCc
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPv 297 (488)
.... .++++.+. ..|..++|.++|..
T Consensus 82 v~~~----------------~~~~v~~~---l~~~~~vi~~~~Gi 107 (328)
T PRK14618 82 VPSK----------------ALRETLAG---LPRALGYVSCAKGL 107 (328)
T ss_pred CchH----------------HHHHHHHh---cCcCCEEEEEeecc
Confidence 6211 12333333 34566778888864
No 84
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.87 E-value=1.9e-05 Score=84.45 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=37.3
Q ss_pred CcEEEEec-chhHHHHHHHHHhh-------hhHHHHHHHH---HHHHhhhCCC
Q psy12825 131 QKITVVGA-GQVGMACTYSILTQ-------TMARDAVSTV---DRLLSQVAPS 172 (488)
Q Consensus 131 ~ki~vvg~-g~vg~~~a~~~~~k-------~la~eivlid---~~~~~e~~~~ 172 (488)
-||+|||+ |+||+++||+|+++ ++++|++++| +++.++.+|.
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL 153 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMEL 153 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHH
Confidence 59999999 99999999999999 8888999999 6677776664
No 85
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.86 E-value=0.00012 Score=75.29 Aligned_cols=105 Identities=18% Similarity=0.192 Sum_probs=66.3
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCC------CCCCcEEEcCCccccCCCcEEE
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF------LRSPKIESGSDIAMSEGSRIVI 250 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~------~~~~~v~~ttd~eal~dADiVI 250 (488)
++||+|||+|.||..++..|+..|. +|.++|+++. .+.....-...... ....++..++++++++++|+||
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~--~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 78 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGA--DVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVL 78 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCC--cEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEE
Confidence 3689999999999999999999986 8999998642 22211100000000 0012344556677889999999
Q ss_pred EecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCchhH
Q psy12825 251 ITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVDVL 300 (488)
Q Consensus 251 itag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvdi~ 300 (488)
++...+ ...++++.+..+ .++.+++..+|..+..
T Consensus 79 l~vk~~----------------~~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 79 VTVKSA----------------ATADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred EEecCc----------------chHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 997321 112344555554 4667777788877643
No 86
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.84 E-value=0.00011 Score=78.16 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=70.8
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC---------CCCCCcEEEcCCcc-ccCCCc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP---------FLRSPKIESGSDIA-MSEGSR 247 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~---------~~~~~~v~~ttd~e-al~dAD 247 (488)
|||+|||+|.||..+|..|+..|. +|+.+|+++++++.+......... .....++..+++++ ++++||
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~--~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGH--EVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDAD 78 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCC--eEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCC
Confidence 589999999999999999999887 899999999877654321111000 00013466677774 699999
Q ss_pred EEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEe
Q psy12825 248 IVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIIS 294 (488)
Q Consensus 248 iVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~T 294 (488)
+||+++..+..... .-+...+.+..+.+.++ .+..++++.|
T Consensus 79 vvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 79 VIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred EEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 99999876653211 12334455555555554 4555555544
No 87
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.84 E-value=1e-05 Score=82.80 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=36.8
Q ss_pred cEEEEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCCC
Q psy12825 132 KITVVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAPS 172 (488)
Q Consensus 132 ki~vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~~ 172 (488)
||+|||+|+||+++||+++.+++++|++++| +++.++.+|.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL 44 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDF 44 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHH
Confidence 8999999999999999999999999999999 4466776665
No 88
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=97.82 E-value=0.00018 Score=76.69 Aligned_cols=114 Identities=13% Similarity=0.145 Sum_probs=71.4
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC---------CCCCCcEEEcCCccccCC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP---------FLRSPKIESGSDIAMSEG 245 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~---------~~~~~~v~~ttd~eal~d 245 (488)
|+.+||+|||.|.||..+|..|+..|. +|+.+|+++++++.+.....+... ......+..+++ +++
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G~--~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~---~~~ 75 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQK--QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTT---PEP 75 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCCC--EEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecc---ccc
Confidence 346899999999999999999999987 899999999887753211111000 001123444443 458
Q ss_pred CcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEe-CCchh
Q psy12825 246 SRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIIS-NPVDV 299 (488)
Q Consensus 246 ADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~T-NPvdi 299 (488)
||+||++...|.+... ..++..+.+.++.|.++. +..+||+-| .|...
T Consensus 76 aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgt 125 (415)
T PRK11064 76 ADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGA 125 (415)
T ss_pred CCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCH
Confidence 9999999877653221 122344555556666653 455555554 46553
No 89
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.78 E-value=0.00016 Score=75.88 Aligned_cols=118 Identities=12% Similarity=0.091 Sum_probs=78.2
Q ss_pred CCceEEEEecccchHHHHHHHHHcC-----CCCeEEEEeCChhH-HHHHHHHHhhcC----C---CCCCCcEEEcCCc-c
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQG-----IYSNFCLIDSNEDR-CKGEMLDLQHGA----P---FLRSPKIESGSDI-A 241 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~-----l~~el~L~Di~~e~-l~g~~~dL~~~~----~---~~~~~~v~~ttd~-e 241 (488)
+.+||+|||+|+.|+++|..|+.++ +..+|.||.++++. -+..+.++++.. . +....++..++|. +
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 4579999999999999999999876 23589999888752 112344454321 1 1234577888887 5
Q ss_pred ccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhc--c-CCCcEEEEEeC---Cc----hhHHHHHHHhcC
Q psy12825 242 MSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAK--G-SPDCILLIISN---PV----DVLTYISWKLSG 309 (488)
Q Consensus 242 al~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~--~-~p~a~vIv~TN---Pv----di~t~~~~k~sg 309 (488)
++++||+||+++. ...++++++.+.. + .++.++|.++- +. ..+++++.+..+
T Consensus 90 av~~aDiIvlAVP----------------sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~ 151 (365)
T PTZ00345 90 AVEDADLLIFVIP----------------HQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELG 151 (365)
T ss_pred HHhcCCEEEEEcC----------------hHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhC
Confidence 7999999999862 2356777777776 4 33445555542 11 246667666543
No 90
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=97.76 E-value=0.00028 Score=75.46 Aligned_cols=114 Identities=13% Similarity=0.088 Sum_probs=71.1
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-----CCCCCcEEEcCCccccCCCcEEE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-----FLRSPKIESGSDIAMSEGSRIVI 250 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-----~~~~~~v~~ttd~eal~dADiVI 250 (488)
+++||+|||.|.||..+|..|+. ++ +|+.||+++++.+.+......... +....++..+++.+++++||++|
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~--~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvi 81 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SR--QVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYI 81 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CC--EEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEE
Confidence 46899999999999999999776 44 999999999877654311111000 00112456677788899999999
Q ss_pred EecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEE-eCCch
Q psy12825 251 ITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLII-SNPVD 298 (488)
Q Consensus 251 itag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~-TNPvd 298 (488)
++++.|.+.... .++..+....+.|.++ .+..++|+- |-|..
T Consensus 82 i~Vptp~~~~~~------~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pg 125 (425)
T PRK15182 82 ITVPTPINTYKQ------PDLTPLIKASETVGTVLNRGDIVVYESTVYPG 125 (425)
T ss_pred EEcCCCCCCCCC------cchHHHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence 999877543111 1222333334445444 344555544 34544
No 91
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.75 E-value=1.5e-05 Score=81.85 Aligned_cols=44 Identities=45% Similarity=0.695 Sum_probs=38.7
Q ss_pred CCCcEEEEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCCC
Q psy12825 129 PDQKITVVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAPS 172 (488)
Q Consensus 129 ~~~ki~vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~~ 172 (488)
++.||+|||+|.||.++||+++.+++++|++++| +++.++.+|.
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl 48 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDL 48 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHH
Confidence 4569999999999999999999999999999999 5566766664
No 92
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.75 E-value=0.00035 Score=72.88 Aligned_cols=132 Identities=16% Similarity=0.141 Sum_probs=87.4
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC---------CCCCCcEEEcCCccccCCCcE
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP---------FLRSPKIESGSDIAMSEGSRI 248 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~---------~~~~~~v~~ttd~eal~dADi 248 (488)
.+|+|||.|.||..+|..++.+|+ .++=+|+|+.+.+.+...-.+... .-...++.+|+|++.++.||+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv 87 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDV 87 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCE
Confidence 799999999999999999999998 899999999877654322222211 013567889999999999999
Q ss_pred EEEecccccCC-CcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEE-eCCch----hHHHHHHHhcCCCCCcEEee
Q psy12825 249 VIITAGVRSLV-GETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLII-SNPVD----VLTYISWKLSGFPKNRVIGS 318 (488)
Q Consensus 249 VIitag~~~k~-G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~-TNPvd----i~t~~~~k~sg~p~~rViG~ 318 (488)
+|+++..|.+. .+.. +..+..-++.|.++ .+..+||+= |-|.. ++-.++.+.+|+.-..-|++
T Consensus 88 ~iI~VPTPl~~~~~pD-------ls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l 157 (436)
T COG0677 88 FIICVPTPLKKYREPD-------LSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL 157 (436)
T ss_pred EEEEecCCcCCCCCCC-------hHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence 99998777543 2222 33455556666665 344544443 45554 33444444466543333444
No 93
>PLN02602 lactate dehydrogenase
Probab=97.74 E-value=1.8e-05 Score=82.46 Aligned_cols=42 Identities=38% Similarity=0.542 Sum_probs=37.8
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCCC
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAPS 172 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~~ 172 (488)
.||+|||+|+||+++||+++.+++++|++++| +++.++.+|.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL 82 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDL 82 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHH
Confidence 59999999999999999999999999999999 5666776665
No 94
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.73 E-value=0.00018 Score=72.68 Aligned_cols=117 Identities=20% Similarity=0.192 Sum_probs=70.5
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCC--CcEEEcCCccc-cCCCcEEEEecc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRS--PKIESGSDIAM-SEGSRIVIITAG 254 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~--~~v~~ttd~ea-l~dADiVIitag 254 (488)
|||+|||+|.+|..++..|+..+. +|.++++ +++++.....--........ ......+|+++ .+++|+||++..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~--~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk 77 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGR--DVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVK 77 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC--ceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEec
Confidence 589999999999999999998876 8999998 66555432110000000000 01112345544 589999999963
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCchhHHHHHHHhcCCCCCcEE
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVDVLTYISWKLSGFPKNRVI 316 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rVi 316 (488)
.+ .+.++.+.+..+ .++.++|.+.|.++....+ .++ +|.++++
T Consensus 78 ~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l-~~~--~~~~~v~ 121 (305)
T PRK12921 78 AY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQL-EPY--FGRERVL 121 (305)
T ss_pred cc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHH-HHh--CCcccEE
Confidence 11 124444555554 4567778888987644333 222 4555655
No 95
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.62 E-value=0.00046 Score=69.48 Aligned_cols=65 Identities=20% Similarity=0.395 Sum_probs=48.6
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIita 253 (488)
+||+|||+|.||..++..|...+. +|.++|++++.++... +.. . . . ..+++.+++++||+||++.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~-~~g--~----~-~-~~~~~~~~~~~aDlVilav 65 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGH--TVYGVSRRESTCERAI-ERG--L----V-D-EASTDLSLLKDCDLVILAL 65 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHH-HCC--C----c-c-cccCCHhHhcCCCEEEEcC
Confidence 589999999999999999998886 8999999987665421 111 0 0 0 1234556789999999996
No 96
>PRK07680 late competence protein ComER; Validated
Probab=97.55 E-value=0.00056 Score=68.58 Aligned_cols=96 Identities=19% Similarity=0.290 Sum_probs=65.9
Q ss_pred ceEEEEecccchHHHHHHHHHcCC--CCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGI--YSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAG 254 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l--~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag 254 (488)
+||+|||+|.||..++..|...+. ..+|.++|+++++++...... ..+..+.+. +.+.++|+||++..
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~---------~g~~~~~~~~~~~~~aDiVilav~ 71 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERY---------PGIHVAKTIEEVISQSDLIFICVK 71 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHc---------CCeEEECCHHHHHHhCCEEEEecC
Confidence 479999999999999999988874 247999999987665432111 123334455 45889999999961
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCch
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVD 298 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvd 298 (488)
+ ..+.++.+.+..+ .++.++|.++|.+.
T Consensus 72 ----p------------~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 72 ----P------------LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred ----H------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 1 1234455555544 45678888888764
No 97
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.55 E-value=4.4e-05 Score=78.46 Aligned_cols=42 Identities=24% Similarity=0.428 Sum_probs=37.0
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCCC
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAPS 172 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~~ 172 (488)
.||+|||+|+||.++||.++.+++++|++++| +++.++.+|.
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl 51 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDL 51 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHH
Confidence 59999999999999999999999999999999 5555666654
No 98
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.53 E-value=0.0012 Score=67.28 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=50.7
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+..+||+|||+|.||..++..|...+...+|.++|++++.++.. .+.. . ....+.++ +.+++||+||+++
T Consensus 4 ~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a-~~~g------~--~~~~~~~~~~~~~~aDvViiav 74 (307)
T PRK07502 4 PLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARA-RELG------L--GDRVTTSAAEAVKGADLVILCV 74 (307)
T ss_pred cCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHH-HhCC------C--CceecCCHHHHhcCCCEEEECC
Confidence 34579999999999999999998888655899999998766532 1110 0 11122344 5688999999996
No 99
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.51 E-value=8.3e-05 Score=76.04 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=36.3
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHHHH---HHhhhCCC
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTVDR---LLSQVAPS 172 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid~~---~~~e~~~~ 172 (488)
.||+|||+|+||.++||+++.+.+++|++++|.. ..++.+|.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL 45 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDL 45 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcch
Confidence 4999999999999999999999999999999943 55666664
No 100
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.51 E-value=0.00054 Score=68.15 Aligned_cols=95 Identities=14% Similarity=0.317 Sum_probs=63.3
Q ss_pred CceEEEEecccchHHHHHHHHHcCC-CCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGI-YSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAG 254 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l-~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag 254 (488)
++||+|||+|.||..++..|...+. ..++.++|+++++++.....+ .+..+.+. +.+.+||+||++..
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~----------g~~~~~~~~~~~~~advVil~v~ 71 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY----------GVRAATDNQEAAQEADVVVLAVK 71 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc----------CCeecCChHHHHhcCCEEEEEcC
Confidence 4789999999999999999988773 247999999987665432221 11223454 45789999999961
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
...++++.+.+..+. +..||.++|-..
T Consensus 72 ----------------~~~~~~v~~~l~~~~-~~~vvs~~~gi~ 98 (267)
T PRK11880 72 ----------------PQVMEEVLSELKGQL-DKLVVSIAAGVT 98 (267)
T ss_pred ----------------HHHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence 123455555555443 456777777553
No 101
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.48 E-value=0.00043 Score=70.73 Aligned_cols=79 Identities=13% Similarity=0.242 Sum_probs=59.8
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAG 254 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag 254 (488)
..+||+|||+|.+|.+++..|...|. +|.++|+++. .++ +++++||+||++..
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~--~V~~~~r~~~------------------------~~~~~~~~~advvi~~vp 56 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGH--RVRVWSRRSG------------------------LSLAAVLADADVIVSAVS 56 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCC--EEEEEeCCCC------------------------CCHHHHHhcCCEEEEECC
Confidence 45799999999999999999999987 8999998752 133 45789999999962
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhc--cCCCcEEEEEeCC
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAK--GSPDCILLIISNP 296 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~--~~p~a~vIv~TNP 296 (488)
...++++++.+.. ..++.+++..|+.
T Consensus 57 ----------------~~~~~~v~~~l~~~~~~~~~ivi~~s~g 84 (308)
T PRK14619 57 ----------------MKGVRPVAEQVQALNLPPETIIVTATKG 84 (308)
T ss_pred ----------------hHHHHHHHHHHHHhcCCCCcEEEEeCCc
Confidence 1245666666764 3567777777763
No 102
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.48 E-value=1.9e-05 Score=71.71 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=36.3
Q ss_pred CcEEEEec-chhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCC
Q psy12825 131 QKITVVGA-GQVGMACTYSILTQTMARDAVSTV---DRLLSQVAP 171 (488)
Q Consensus 131 ~ki~vvg~-g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~ 171 (488)
+||+|||+ |.||.++||.++.+++++|++++| +++.++.+|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~D 45 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALD 45 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehh
Confidence 59999999 999999999999999999999998 456666655
No 103
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.47 E-value=0.00013 Score=74.93 Aligned_cols=41 Identities=20% Similarity=0.172 Sum_probs=35.4
Q ss_pred cEEEEec-chhHHHHHHHHHhhhhHHHHHHHHHH-HHhhhCCC
Q psy12825 132 KITVVGA-GQVGMACTYSILTQTMARDAVSTVDR-LLSQVAPS 172 (488)
Q Consensus 132 ki~vvg~-g~vg~~~a~~~~~k~la~eivlid~~-~~~e~~~~ 172 (488)
||+|||+ |+||+++||+++.+++++|++++|.. ..++.+|.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL 43 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADL 43 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchh
Confidence 8999999 99999999999999999999999932 45556554
No 104
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.47 E-value=0.00067 Score=69.39 Aligned_cols=120 Identities=15% Similarity=0.246 Sum_probs=70.9
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCC---CcEEEcCCccccCCCcEEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRS---PKIESGSDIAMSEGSRIVII 251 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~---~~v~~ttd~eal~dADiVIi 251 (488)
+..+||+|||+|.+|..++..|...+. +|.+++++.. +.....-......... ..+..+++.+++..+|+||+
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~--~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil 78 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGF--DVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLV 78 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCC--eEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEE
Confidence 456799999999999999999988886 8999998652 2211100000000010 11223344556788999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEe
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG 317 (488)
+.-... ..+..+.+... .|+..++...|=.+..-.+ .++ +|+++|++
T Consensus 79 avK~~~----------------~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l-~~~--~~~~~v~~ 126 (313)
T PRK06249 79 GLKTTA----------------NALLAPLIPQVAAPDAKVLLLQNGLGVEEQL-REI--LPAEHLLG 126 (313)
T ss_pred EecCCC----------------hHhHHHHHhhhcCCCCEEEEecCCCCcHHHH-HHH--CCCCcEEE
Confidence 962111 12333444443 4778888888877643333 222 56666653
No 105
>KOG1683|consensus
Probab=97.46 E-value=0.00031 Score=72.52 Aligned_cols=113 Identities=16% Similarity=0.127 Sum_probs=78.8
Q ss_pred chHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC----C---------CCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 188 VGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA----P---------FLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 188 vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~----~---------~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
||.++|..++..++ +++|+|.|...+++-...+.... . ......++.+.||..++++|+||.++
T Consensus 1 MG~gia~~~~~~~i--~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav- 77 (380)
T KOG1683|consen 1 MGAGIAIVFILAGI--RTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAV- 77 (380)
T ss_pred CcchHHHHHHHcCC--cEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccch-
Confidence 67789999999999 89999999776553333333211 0 01134455677899999999998885
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEee
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGS 318 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~ 318 (488)
.+|++.++++...|+++||+. .|..||...+--..+...+.. +++++|+
T Consensus 78 -------------~edl~Lk~~l~~~le~v~~~~-~i~gsntSs~~~~~isa~ld~-~e~vvg~ 126 (380)
T KOG1683|consen 78 -------------FEDLELKHELFKSLEKVEPPK-CIRGSNTSSLDINVISAGLDR-PEMVVGM 126 (380)
T ss_pred -------------hhhHHHHHHHHHHHHhhcCCc-ceeeeccccCChHHHhhccCc-hhhhccc
Confidence 589999999999999999765 567888765332233222333 4677766
No 106
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.45 E-value=8.8e-05 Score=76.10 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=35.4
Q ss_pred cEEEEec-chhHHHHHHHHHhhhhHHHHHHHHH-HHHhhhCCC
Q psy12825 132 KITVVGA-GQVGMACTYSILTQTMARDAVSTVD-RLLSQVAPS 172 (488)
Q Consensus 132 ki~vvg~-g~vg~~~a~~~~~k~la~eivlid~-~~~~e~~~~ 172 (488)
||+|||+ |+||+++||++..+++++|++++|. ++.++.+|.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL 44 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADL 44 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHh
Confidence 8999999 9999999999999999999999996 444555554
No 107
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.40 E-value=0.00075 Score=73.08 Aligned_cols=97 Identities=12% Similarity=0.206 Sum_probs=67.1
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc----ccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA----MSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e----al~dADiVIita 253 (488)
.+|+|||.|.||..+|..|+.+|+ +|.+||+++++.+.......+. ...+..+.+++ .++++|+||+++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~--~V~v~dr~~~~~~~l~~~~~~~-----g~~i~~~~s~~e~v~~l~~~d~Iil~v 74 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF--KISVYNRTYEKTEEFVKKAKEG-----NTRVKGYHTLEELVNSLKKPRKVILLI 74 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhhhhc-----CCcceecCCHHHHHhcCCCCCEEEEEe
Confidence 589999999999999999999998 8999999998776544322211 11234455653 344699888885
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCC
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNP 296 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNP 296 (488)
. +.+.+.++.+.+..+ .|+.++|..+|-
T Consensus 75 ~---------------~~~~v~~vi~~l~~~L~~g~iIID~gn~ 103 (470)
T PTZ00142 75 K---------------AGEAVDETIDNLLPLLEKGDIIIDGGNE 103 (470)
T ss_pred C---------------ChHHHHHHHHHHHhhCCCCCEEEECCCC
Confidence 1 123445555555554 578888888874
No 108
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.39 E-value=0.0012 Score=66.30 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=47.6
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIita 253 (488)
+||+|||+|.||..++..|...++..+|+.+|++++.++.. .+.. . +....+++++.+||+||++.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~-~~~g-------~--~~~~~~~~~~~~aD~Vilav 66 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKA-LELG-------L--VDEIVSFEELKKCDVIFLAI 66 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH-HHCC-------C--CcccCCHHHHhcCCEEEEeC
Confidence 48999999999999999999888655799999998766532 1111 0 11123454455799999996
No 109
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.38 E-value=0.0014 Score=64.20 Aligned_cols=69 Identities=12% Similarity=0.212 Sum_probs=48.0
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCC--CCeEEEEeC-ChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGI--YSNFCLIDS-NEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVI 250 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l--~~el~L~Di-~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVI 250 (488)
|+.+||+|||+|.+|..++..++..+. ..++++++. ++++++.....+ .+..+.|+ +.++++|+||
T Consensus 2 m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~DiVi 71 (245)
T PRK07634 2 LKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY----------NVSTTTDWKQHVTSVDTIV 71 (245)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc----------CcEEeCChHHHHhcCCEEE
Confidence 456799999999999999999987753 334778876 456555432221 12234565 4688999999
Q ss_pred Eec
Q psy12825 251 ITA 253 (488)
Q Consensus 251 ita 253 (488)
++.
T Consensus 72 iav 74 (245)
T PRK07634 72 LAM 74 (245)
T ss_pred Eec
Confidence 996
No 110
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.37 E-value=0.0014 Score=66.05 Aligned_cols=98 Identities=11% Similarity=0.163 Sum_probs=62.2
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCC--CCeEEEEeCCh-hHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGI--YSNFCLIDSNE-DRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVI 250 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l--~~el~L~Di~~-e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVI 250 (488)
|+.+||+|||+|.||.+++..|+..+. ..+|.++|++. ++++.....+ .+..+.+. +.+++||+||
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~----------g~~~~~~~~e~~~~aDvVi 70 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY----------GVKGTHNKKELLTDANILF 70 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc----------CceEeCCHHHHHhcCCEEE
Confidence 355799999999999999999998872 35899999865 3444322211 12233454 4578999999
Q ss_pred EecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCch
Q psy12825 251 ITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVD 298 (488)
Q Consensus 251 itag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvd 298 (488)
++.. | ..+.++...+..+ .++.++|.+.+-+.
T Consensus 71 lav~----p------------~~~~~vl~~l~~~~~~~~liIs~~aGi~ 103 (279)
T PRK07679 71 LAMK----P------------KDVAEALIPFKEYIHNNQLIISLLAGVS 103 (279)
T ss_pred EEeC----H------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 9962 1 1223333445443 45666666655543
No 111
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.32 E-value=0.0012 Score=66.64 Aligned_cols=66 Identities=18% Similarity=0.301 Sum_probs=49.3
Q ss_pred ceEEEEecccchHHHHHHHHHcCC--CCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGI--YSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l--~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+||++||+|.||.+++..|...+. ..+|..+|+++++++....++ .+..+.+. +.+++||+||++.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~----------g~~~~~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY----------GITITTNNNEVANSADILILSI 71 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc----------CcEEeCCcHHHHhhCCEEEEEe
Confidence 589999999999999999998874 457999999887665422211 02233454 4578999999997
No 112
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.29 E-value=0.0014 Score=65.11 Aligned_cols=93 Identities=19% Similarity=0.326 Sum_probs=61.5
Q ss_pred ceEEEEecccchHHHHHHHHHcCC--CCeEEEE-eCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGI--YSNFCLI-DSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l--~~el~L~-Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
|||++||+|.||..++..|+..+. ..+|+.+ |+++++++.. .+. .+..+.+. +.+++||+||++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~----~~~-------g~~~~~~~~e~~~~aDvVil~v 69 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVF----QSL-------GVKTAASNTEVVKSSDVIILAV 69 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHH----HHc-------CCEEeCChHHHHhcCCEEEEEE
Confidence 689999999999999999998875 4578888 8888765432 211 12233454 5678999999996
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCc
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPV 297 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPv 297 (488)
. + ..+.++...+..+ .|+.++|..++..
T Consensus 70 ~----~------------~~~~~vl~~l~~~~~~~~~iIs~~~g~ 98 (266)
T PLN02688 70 K----P------------QVVKDVLTELRPLLSKDKLLVSVAAGI 98 (266)
T ss_pred C----c------------HHHHHHHHHHHhhcCCCCEEEEecCCC
Confidence 1 1 2344454555544 4566556554544
No 113
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.28 E-value=0.0014 Score=66.12 Aligned_cols=62 Identities=10% Similarity=0.231 Sum_probs=47.7
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
||+|||+|.||..++..|+..++ +|.+||+++++++.. .+.- . ....+. +++++||+||++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~--~V~~~dr~~~~~~~~----~~~g------~-~~~~~~~~~~~~aDivi~~v 63 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY--QLHVTTIGPEVADEL----LAAG------A-VTAETARQVTEQADVIFTMV 63 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC--eEEEEcCCHHHHHHH----HHCC------C-cccCCHHHHHhcCCEEEEec
Confidence 69999999999999999998887 899999998766542 2210 1 112344 6789999999996
No 114
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.28 E-value=0.00069 Score=60.97 Aligned_cols=78 Identities=14% Similarity=0.200 Sum_probs=58.3
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
...+..+|.|||||.+|..+++.|...+. .+|.+++++.++++..+..+... ...+....+. +.+.++|+||.
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~~~-----~~~~~~~~~~~~~~~~~DivI~ 81 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFGGV-----NIEAIPLEDLEEALQEADIVIN 81 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHTGC-----SEEEEEGGGHCHHHHTESEEEE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcCcc-----ccceeeHHHHHHHHhhCCeEEE
Confidence 45677899999999999999999999875 47999999999888777666211 1223333444 46889999999
Q ss_pred ecccc
Q psy12825 252 TAGVR 256 (488)
Q Consensus 252 tag~~ 256 (488)
+.+.+
T Consensus 82 aT~~~ 86 (135)
T PF01488_consen 82 ATPSG 86 (135)
T ss_dssp -SSTT
T ss_pred ecCCC
Confidence 97544
No 115
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.25 E-value=0.00095 Score=67.95 Aligned_cols=90 Identities=16% Similarity=0.243 Sum_probs=62.1
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc----cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI----AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~----eal~dADiVIita 253 (488)
|||+|||+|.||..++..|+..+. +|.+||+++++++..... .. . ...++ +.++++|+||++.
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~--~V~~~dr~~~~~~~l~~~---g~------~--~~~s~~~~~~~~~~~dvIi~~v 67 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGH--DCVGYDHDQDAVKAMKED---RT------T--GVANLRELSQRLSAPRVVWVMV 67 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHc---CC------c--ccCCHHHHHhhcCCCCEEEEEc
Confidence 489999999999999999999886 899999999877654321 10 0 11222 3567899999995
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCC
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNP 296 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNP 296 (488)
. + ..++++++.+... .++.++|..+|.
T Consensus 68 p----~------------~~~~~v~~~l~~~l~~g~ivid~st~ 95 (298)
T TIGR00872 68 P----H------------GIVDAVLEELAPTLEKGDIVIDGGNS 95 (298)
T ss_pred C----c------------hHHHHHHHHHHhhCCCCCEEEECCCC
Confidence 1 1 1344455555554 466778888775
No 116
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=97.22 E-value=0.0066 Score=62.90 Aligned_cols=138 Identities=12% Similarity=0.191 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHHHHh-hhC--C---CCCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC
Q psy12825 153 TMARDAVSTVDRLLS-QVA--P---SIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA 226 (488)
Q Consensus 153 ~la~eivlid~~~~~-e~~--~---~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~ 226 (488)
.+.+.+...++.... .+. . ......++|+|||.|.+|..+|..|...|. +|+.||++++.... .
T Consensus 116 ~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~--~V~~~d~~~~~~~~----~---- 185 (330)
T PRK12480 116 QLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGA--TITAYDAYPNKDLD----F---- 185 (330)
T ss_pred HHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEeCChhHhhh----h----
Confidence 466777666543221 110 0 034567899999999999999998876665 89999998643211 0
Q ss_pred CCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHH
Q psy12825 227 PFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISW 305 (488)
Q Consensus 227 ~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~ 305 (488)
+..+.++ +.+++||+|+++.. ... .+..++- .+.+....|++++|+++-=.-+-...+.
T Consensus 186 -------~~~~~~l~ell~~aDiVil~lP-----~t~------~t~~li~--~~~l~~mk~gavlIN~aRG~~vd~~aL~ 245 (330)
T PRK12480 186 -------LTYKDSVKEAIKDADIISLHVP-----ANK------ESYHLFD--KAMFDHVKKGAILVNAARGAVINTPDLI 245 (330)
T ss_pred -------hhccCCHHHHHhcCCEEEEeCC-----CcH------HHHHHHh--HHHHhcCCCCcEEEEcCCccccCHHHHH
Confidence 1123355 57899999999862 111 1112221 2333334578888888743222233333
Q ss_pred HhcCCCCCcEEeecCChHH
Q psy12825 306 KLSGFPKNRVIGSGTNLDS 324 (488)
Q Consensus 306 k~sg~p~~rViG~gt~lds 324 (488)
+. +...++.|.+ +|.
T Consensus 246 ~a--L~~g~i~gaa--lDV 260 (330)
T PRK12480 246 AA--VNDGTLLGAA--IDT 260 (330)
T ss_pred HH--HHcCCeeEEE--Eec
Confidence 32 2334665553 454
No 117
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.21 E-value=0.0013 Score=66.74 Aligned_cols=75 Identities=21% Similarity=0.382 Sum_probs=57.9
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.+.+||+|+|||.+|.++++.|+..+. .+|.++|++.++++..+.++.+... ...+....+. +.+.++|+||.+.
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~~~---~~~~~~~~~~~~~~~~aDiVInaT 200 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNARFP---AARATAGSDLAAALAAADGLVHAT 200 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhCC---CeEEEeccchHhhhCCCCEEEECC
Confidence 345799999999999999999998875 5799999999999988888865421 1233323333 4688999999984
No 118
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=97.18 E-value=0.0019 Score=66.24 Aligned_cols=118 Identities=19% Similarity=0.308 Sum_probs=72.1
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHH---HhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLD---LQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~d---L~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
|||+|+|+|.||+.+++.|...+ ..+.++-+++. ++....+ +.+... ........+++.+.+..+|+||++.-
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g--~~V~~~~R~~~-~~~l~~~GL~i~~~~~-~~~~~~~~~~~~~~~~~~Dlviv~vK 76 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG--HDVTLLVRSRR-LEALKKKGLRIEDEGG-NFTTPVVAATDAEALGPADLVIVTVK 76 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC--CeEEEEecHHH-HHHHHhCCeEEecCCC-ccccccccccChhhcCCCCEEEEEec
Confidence 69999999999999999999998 36666666542 4332221 111100 00122233445577889999999962
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCchhHHHHHHHhcCCCCCcEE-ee
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPVDVLTYISWKLSGFPKNRVI-GS 318 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPvdi~t~~~~k~sg~p~~rVi-G~ 318 (488)
.. -..+..+.+..+. |+.+|+.+=|=.+..- .+.+. ++.++|+ |+
T Consensus 77 a~----------------q~~~al~~l~~~~~~~t~vl~lqNG~g~~e-~l~~~--~~~~~il~G~ 123 (307)
T COG1893 77 AY----------------QLEEALPSLAPLLGPNTVVLFLQNGLGHEE-ELRKI--LPKETVLGGV 123 (307)
T ss_pred cc----------------cHHHHHHHhhhcCCCCcEEEEEeCCCcHHH-HHHHh--CCcceEEEEE
Confidence 21 2345566666664 5667777778877655 44443 4444444 45
No 119
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.16 E-value=0.0027 Score=64.14 Aligned_cols=63 Identities=21% Similarity=0.348 Sum_probs=48.2
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+||+|||+|.||..++..|+..+. +|.+||+++++.+.. ... .+..+.++ +.+++||+||++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~--~v~~~d~~~~~~~~~----~~~-------g~~~~~~~~e~~~~~d~vi~~v 66 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY--SLVVYDRNPEAVAEV----IAA-------GAETASTAKAVAEQCDVIITML 66 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC--eEEEEcCCHHHHHHH----HHC-------CCeecCCHHHHHhcCCEEEEeC
Confidence 589999999999999999998886 899999998766532 111 11233455 4678999999996
No 120
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.15 E-value=0.0017 Score=66.13 Aligned_cols=63 Identities=21% Similarity=0.345 Sum_probs=48.9
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+||+|||.|.||..++..|+..+. +|.+||+++++++... ... +..+.++ +.+++||+||++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~--~V~v~d~~~~~~~~~~----~~g-------~~~~~s~~~~~~~aDvVi~~v 65 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH--QLQVFDVNPQAVDALV----DKG-------ATPAASPAQAAAGAEFVITML 65 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC--eEEEEcCCHHHHHHHH----HcC-------CcccCCHHHHHhcCCEEEEec
Confidence 589999999999999999999886 8999999988765432 110 1123454 5689999999996
No 121
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.15 E-value=0.0016 Score=62.78 Aligned_cols=99 Identities=16% Similarity=0.220 Sum_probs=62.2
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC---hhHHHHH---------------HHHHhhcCCCCCCCcEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN---EDRCKGE---------------MLDLQHGAPFLRSPKIES 236 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~---~e~l~g~---------------~~dL~~~~~~~~~~~v~~ 236 (488)
.+..||+|+|+|.+|+.++..|+..|+ .+|+|+|.+ +..+..+ ...+.+. .+..++..
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~i---np~~~i~~ 94 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGI-GKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEI---NPYTEIEA 94 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCC-CEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHH---CCCCEEEE
Confidence 345799999999999999999999987 479999987 4333321 1111111 11233332
Q ss_pred cC------Cc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEE
Q psy12825 237 GS------DI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLI 292 (488)
Q Consensus 237 tt------d~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv 292 (488)
.. +. +.++++|+||.+. .|.+....+...+.+..+..+++.
T Consensus 95 ~~~~i~~~~~~~~~~~~DlVi~a~---------------Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 95 YDEKITEENIDKFFKDADIVCEAF---------------DNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred eeeeCCHhHHHHHhcCCCEEEECC---------------CCHHHHHHHHHHHHHHcCCCcEEE
Confidence 11 11 2478999999984 455566666666666655444443
No 122
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.15 E-value=0.0054 Score=62.67 Aligned_cols=120 Identities=15% Similarity=0.198 Sum_probs=72.6
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHH--HhhcCCCCCCCcEEE-cCCccccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLD--LQHGAPFLRSPKIES-GSDIAMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~d--L~~~~~~~~~~~v~~-ttd~eal~dADiVIita 253 (488)
.|||+|+|+|.||..++..|...|. +|.|+++..+.++.+..+ +. .........+.. ..+.+.....|+||++.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~-i~~~g~~~~~~~~~~~~~~~~~~D~viv~v 78 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLT-LVEQGQASLYAIPAETADAAEPIHRLLLAC 78 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeE-EeeCCcceeeccCCCCcccccccCEEEEEC
Confidence 4799999999999999999988876 899999976656543221 11 100000001111 11223456899999996
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEee
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVDVLTYISWKLSGFPKNRVIGS 318 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~ 318 (488)
-. .. ..+..+.+..+ .++..++.+-|=++....+. ++ |+.++|++-
T Consensus 79 K~---------------~~-~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~-~~--~~~~~v~~g 125 (305)
T PRK05708 79 KA---------------YD-AEPAVASLAHRLAPGAELLLLQNGLGSQDAVA-AR--VPHARCIFA 125 (305)
T ss_pred CH---------------Hh-HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHH-Hh--CCCCcEEEE
Confidence 21 11 22344455554 57888888889887554443 22 455666643
No 123
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.13 E-value=0.002 Score=57.76 Aligned_cols=101 Identities=19% Similarity=0.233 Sum_probs=57.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEE-eCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLI-DSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~-Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
...+||+|||+|.+|++++..|...+. +|.-+ .++.+..+ .+.+.. ..... .++ +.+.+||++|++
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~--~v~~v~srs~~sa~----~a~~~~-----~~~~~-~~~~~~~~~aDlv~ia 75 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGH--EVVGVYSRSPASAE----RAAAFI-----GAGAI-LDLEEILRDADLVFIA 75 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTS--EEEEESSCHH-HHH----HHHC-------TT------TTGGGCC-SEEEE-
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCC--eEEEEEeCCccccc----cccccc-----ccccc-cccccccccCCEEEEE
Confidence 356899999999999999999998886 55544 44443333 333321 11112 234 568999999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhcc---CCCcEEEEEe--CCchhHHHH
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG---SPDCILLIIS--NPVDVLTYI 303 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~---~p~a~vIv~T--NPvdi~t~~ 303 (488)
+. + ..+.+++++|..+ -|+-+++..| -+++++.-+
T Consensus 76 vp-----D-----------daI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~ 115 (127)
T PF10727_consen 76 VP-----D-----------DAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPA 115 (127)
T ss_dssp S------C-----------CHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHH
T ss_pred ec-----h-----------HHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhH
Confidence 62 1 1567888888887 3666666665 356666554
No 124
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.11 E-value=0.0062 Score=65.49 Aligned_cols=64 Identities=22% Similarity=0.363 Sum_probs=48.0
Q ss_pred ceEEEEe-cccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVG-AGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIG-AG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
|||+||| .|.||..++..|...+. +|.++|++++.+...+.++ .+..+++. +.+.+||+||+++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~~~~a~~~----------gv~~~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKGKEVAKEL----------GVEYANDNIDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHc----------CCeeccCHHHHhccCCEEEEec
Confidence 5899998 59999999999988886 8999999876553332221 11234555 5789999999996
No 125
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.09 E-value=0.0028 Score=63.70 Aligned_cols=93 Identities=17% Similarity=0.269 Sum_probs=66.4
Q ss_pred CceEEEEecccchHHHHHHHHHcC-C-CCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQG-I-YSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~-l-~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
++||++||+|+||..++..|...+ + ..+|...|++++++.....++ .. .+ ++|. +....+|+||+++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~------g~--~~--~~~~~~~~~~advv~Lav 70 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEY------GV--VT--TTDNQEAVEEADVVFLAV 70 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHc------CC--cc--cCcHHHHHhhCCEEEEEe
Confidence 479999999999999999999988 3 468999999988775332222 11 11 4454 6788999999997
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
|| ..+.++.+.++...++.++|-+.=
T Consensus 71 ----KP------------q~~~~vl~~l~~~~~~~lvISiaA 96 (266)
T COG0345 71 ----KP------------QDLEEVLSKLKPLTKDKLVISIAA 96 (266)
T ss_pred ----Ch------------HhHHHHHHHhhcccCCCEEEEEeC
Confidence 44 356777777777555655554443
No 126
>PLN00106 malate dehydrogenase
Probab=97.05 E-value=0.00053 Score=70.78 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=35.0
Q ss_pred CcEEEEec-chhHHHHHHHHHhhhhHHHHHHHHHH-HHhhhCC
Q psy12825 131 QKITVVGA-GQVGMACTYSILTQTMARDAVSTVDR-LLSQVAP 171 (488)
Q Consensus 131 ~ki~vvg~-g~vg~~~a~~~~~k~la~eivlid~~-~~~e~~~ 171 (488)
.||+|||+ |+||.++||++.++++++|++++|.. +.++.+|
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~D 61 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAAD 61 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEch
Confidence 59999999 99999999999999999999999943 3344444
No 127
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.04 E-value=0.00021 Score=73.03 Aligned_cols=38 Identities=26% Similarity=0.473 Sum_probs=33.5
Q ss_pred EEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCCC
Q psy12825 135 VVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAPS 172 (488)
Q Consensus 135 vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~~ 172 (488)
|||+|+||.++||.++++++++|++++| +++.++.+|.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl 41 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDL 41 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHH
Confidence 6899999999999999999999999999 5566666664
No 128
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.03 E-value=0.0061 Score=63.73 Aligned_cols=67 Identities=15% Similarity=0.260 Sum_probs=46.5
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+||+|||+|.||.+++..|...++ ++.++|.+++..... .... . .... ..++++ +++++||+||+++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~-~a~~--~--~~~~--~~~~~~~~~~~~aDlVilav 68 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP--DVFIIGYDPSAAQLA-RALG--F--GVID--ELAADLQRAAAEADLIVLAV 68 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHH-HHhc--C--CCCc--ccccCHHHHhcCCCEEEEeC
Confidence 479999999999999999998887 788898877644321 1111 0 0011 123454 4689999999996
No 129
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.02 E-value=0.0029 Score=57.26 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=54.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.+.++|+|+|+|.+|..++..|...+ ..++.++|++.++++....++.... ..... .+. +.++++|+||++.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~Dvvi~~~ 89 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELG-----IAIAY-LDLEELLAEADLIINTT 89 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcc-----cceee-cchhhccccCCEEEeCc
Confidence 55689999999999999999998876 4589999999887776555554210 01122 243 4589999999997
Q ss_pred ccc
Q psy12825 254 GVR 256 (488)
Q Consensus 254 g~~ 256 (488)
...
T Consensus 90 ~~~ 92 (155)
T cd01065 90 PVG 92 (155)
T ss_pred CCC
Confidence 433
No 130
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=96.97 E-value=0.0028 Score=64.20 Aligned_cols=64 Identities=16% Similarity=0.264 Sum_probs=49.0
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+||++||.|.||+.+|.+|...|+ +++.||+++++.. ..+...- .. ...++ ++.++||+||.+.
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~--~v~v~~r~~~ka~---~~~~~~G-----a~--~a~s~~eaa~~aDvVitmv 65 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGH--EVTVYNRTPEKAA---ELLAAAG-----AT--VAASPAEAAAEADVVITML 65 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCC--EEEEEeCChhhhh---HHHHHcC-----Cc--ccCCHHHHHHhCCEEEEec
Confidence 589999999999999999999998 9999999987642 2232211 11 12333 7899999999996
No 131
>PRK05442 malate dehydrogenase; Provisional
Probab=96.95 E-value=0.00042 Score=71.62 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=36.2
Q ss_pred CcEEEEec-chhHHHHHHHHHhhhhHH-----HHHHHHH-----HHHhhhCCC
Q psy12825 131 QKITVVGA-GQVGMACTYSILTQTMAR-----DAVSTVD-----RLLSQVAPS 172 (488)
Q Consensus 131 ~ki~vvg~-g~vg~~~a~~~~~k~la~-----eivlid~-----~~~~e~~~~ 172 (488)
.||+|||+ |.||+++||+++.+++++ |++++|. ++.++.+|.
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl 57 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMEL 57 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhh
Confidence 59999998 999999999999999999 9999994 255665554
No 132
>PLN02256 arogenate dehydrogenase
Probab=96.93 E-value=0.011 Score=60.49 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=47.0
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-c-CCCcEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-S-EGSRIVI 250 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l-~dADiVI 250 (488)
+..+.+||+|||+|.||..++..|...+. +|+.+|.+... ..+.++ . +...++.++ + .++|+||
T Consensus 32 ~~~~~~kI~IIG~G~mG~slA~~L~~~G~--~V~~~d~~~~~--~~a~~~------g----v~~~~~~~e~~~~~aDvVi 97 (304)
T PLN02256 32 EKSRKLKIGIVGFGNFGQFLAKTFVKQGH--TVLATSRSDYS--DIAAEL------G----VSFFRDPDDFCEEHPDVVL 97 (304)
T ss_pred ccCCCCEEEEEeeCHHHHHHHHHHHhCCC--EEEEEECccHH--HHHHHc------C----CeeeCCHHHHhhCCCCEEE
Confidence 56678899999999999999999987775 89999987531 112211 0 112345543 3 4799999
Q ss_pred Eec
Q psy12825 251 ITA 253 (488)
Q Consensus 251 ita 253 (488)
+++
T Consensus 98 lav 100 (304)
T PLN02256 98 LCT 100 (304)
T ss_pred Eec
Confidence 996
No 133
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.93 E-value=0.0097 Score=59.75 Aligned_cols=115 Identities=14% Similarity=0.241 Sum_probs=78.7
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc------c-----
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI------A----- 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~------e----- 241 (488)
.++++.+.|.|| +.+|..+|..|+.+|. +|+|+-+++++|+..+.++++... ....+. ..|+ +
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~~--v~v~vi-~~DLs~~~~~~~l~~~ 77 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKTG--VEVEVI-PADLSDPEALERLEDE 77 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhhC--ceEEEE-ECcCCChhHHHHHHHH
Confidence 356778999999 9999999999999998 999999999999999999997531 112222 2231 1
Q ss_pred ---ccCCCcEEEEecccccCC------CcchHhhHhhhHHHHHHHH----HHHhccCCCcEEEEEe
Q psy12825 242 ---MSEGSRIVIITAGVRSLV------GETRLQLVDRNVKIFKDLI----PKIAKGSPDCILLIIS 294 (488)
Q Consensus 242 ---al~dADiVIitag~~~k~------G~~r~dll~~N~~ii~ei~----~~I~~~~p~a~vIv~T 294 (488)
..-+.|+.|+.+|...-. -.+-.+++.-|+--...+. ..|.+. -.+.|||++
T Consensus 78 l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~-~~G~IiNI~ 142 (265)
T COG0300 78 LKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVER-GAGHIINIG 142 (265)
T ss_pred HHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEe
Confidence 123689999999876421 1234556677765444444 444443 345677775
No 134
>KOG2305|consensus
Probab=96.91 E-value=0.0029 Score=61.68 Aligned_cols=112 Identities=15% Similarity=0.194 Sum_probs=75.9
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHH----HHHHhhcCC---CC-------CCCcEEEcCCc-
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGE----MLDLQHGAP---FL-------RSPKIESGSDI- 240 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~----~~dL~~~~~---~~-------~~~~v~~ttd~- 240 (488)
+.-||+|+|.|-+|++.|..++..|+ +|.||||.++.+... ..++.+.-. .. ....|..|+++
T Consensus 2 s~~ki~ivgSgl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~ 79 (313)
T KOG2305|consen 2 SFGKIAIVGSGLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLN 79 (313)
T ss_pred CccceeEeecccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHH
Confidence 35699999999999999999999998 999999988655433 333332110 00 12345556666
Q ss_pred cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHH
Q psy12825 241 AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYIS 304 (488)
Q Consensus 241 eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~ 304 (488)
|..++|=+|-+++ ++.+...+.+.+++++..-+- .|+.+-.+.+|...+
T Consensus 80 E~vk~Ai~iQEcv--------------pE~L~lkk~ly~qlD~i~d~~-tIlaSSTSt~mpS~~ 128 (313)
T KOG2305|consen 80 ELVKGAIHIQECV--------------PEDLNLKKQLYKQLDEIADPT-TILASSTSTFMPSKF 128 (313)
T ss_pred HHHhhhhhHHhhc--------------hHhhHHHHHHHHHHHHhcCCc-eEEeccccccChHHH
Confidence 4567775555553 566778899999999985333 566777776665544
No 135
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.91 E-value=0.0039 Score=56.36 Aligned_cols=116 Identities=16% Similarity=0.241 Sum_probs=69.1
Q ss_pred EEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE---cCCc-cccCCCcEEEEeccc
Q psy12825 180 ITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES---GSDI-AMSEGSRIVIITAGV 255 (488)
Q Consensus 180 IaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~---ttd~-eal~dADiVIitag~ 255 (488)
|+|+|+|.+|..+|..|...+. +|.|++... .++....+--..........+.. ..+. +....+|+||++...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa 77 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH--DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA 77 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC--EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred CEEECcCHHHHHHHHHHHHCCC--ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence 7899999999999999998777 899999877 55542211111110000111111 1122 367899999999621
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEe
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG 317 (488)
. -..+..+.++.+ .|+..++.+-|=++..-.+. ++ +|+.+|++
T Consensus 78 ~----------------~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~-~~--~~~~~v~~ 121 (151)
T PF02558_consen 78 Y----------------QLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLA-EY--FPRPRVLG 121 (151)
T ss_dssp G----------------GHHHHHHHHCTGEETTEEEEEESSSSSHHHHHH-CH--STGSGEEE
T ss_pred c----------------chHHHHHHHhhccCCCcEEEEEeCCCCcHHHHH-HH--cCCCcEEE
Confidence 1 124456667777 46677888888777554332 22 34455653
No 136
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=96.90 E-value=0.0039 Score=62.26 Aligned_cols=90 Identities=13% Similarity=0.238 Sum_probs=58.0
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCC--CeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIY--SNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~--~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
+.+||+|||+|.||.+++..|...+.. .+++.+|++++++ .+....+. +.++++|+||++
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~~~~~~~~~~~~~~~D~Vila 64 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------PFVYLQSNEELAKTCDIIVLA 64 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------CeEEeCChHHHHHhCCEEEEE
Confidence 457999999999999999999987742 3599999876431 01223343 457899999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
. +| ..+.++.+.+..+-++..+|.+.+-+.
T Consensus 65 v----kp------------~~~~~vl~~i~~~l~~~~iIS~~aGi~ 94 (260)
T PTZ00431 65 V----KP------------DLAGKVLLEIKPYLGSKLLISICGGLN 94 (260)
T ss_pred e----CH------------HHHHHHHHHHHhhccCCEEEEEeCCcc
Confidence 5 21 234455555554422334555555544
No 137
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=96.88 E-value=0.00063 Score=69.46 Aligned_cols=40 Identities=25% Similarity=0.488 Sum_probs=34.1
Q ss_pred EEEEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCCC
Q psy12825 133 ITVVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAPS 172 (488)
Q Consensus 133 i~vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~~ 172 (488)
|+|||+|.||+++||.++.+++++|++++| +++.+..++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL 43 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDL 43 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhH
Confidence 689999999999999999999999999999 4455555554
No 138
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.88 E-value=0.0086 Score=60.34 Aligned_cols=97 Identities=18% Similarity=0.201 Sum_probs=62.5
Q ss_pred CceEEEEecccchHHHHHHHHHcCC--CCeEEEEeCCh-hHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGI--YSNFCLIDSNE-DRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l--~~el~L~Di~~-e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
++||+|||+|.||..++..|...+. ..+|+++|.+. ++++. +.... ..+..+.|. +.++++|+||++
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~----l~~~~-----~~~~~~~~~~e~~~~aDvVila 71 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQ----LYDKY-----PTVELADNEAEIFTKCDHSFIC 71 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHH----HHHHc-----CCeEEeCCHHHHHhhCCEEEEe
Confidence 3689999999999999999988872 25899999864 32322 22111 122334454 467899999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCch
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVD 298 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvd 298 (488)
+. + ..+.+++..+..+ .++.++|.+.|-.+
T Consensus 72 vp----p------------~~~~~vl~~l~~~l~~~~~ivS~~aGi~ 102 (277)
T PRK06928 72 VP----P------------LAVLPLLKDCAPVLTPDRHVVSIAAGVS 102 (277)
T ss_pred cC----H------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 62 1 2345566666554 34556666666554
No 139
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=96.87 E-value=0.0042 Score=67.66 Aligned_cols=100 Identities=13% Similarity=0.131 Sum_probs=66.0
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc----ccCCCcEEEE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA----MSEGSRIVII 251 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e----al~dADiVIi 251 (488)
...+|++||.|.||..+|..|+..|+ +|+.||++.++.+......... ....+....+++ .++.+|+||+
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~--~V~V~NRt~~k~~~l~~~~~~~----Ga~~~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKE----GNLPLYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCC--eEEEECCCHHHHHHHHHhhhhc----CCcccccCCCHHHHHhcCCCCCEEEE
Confidence 45689999999999999999999998 9999999998776543322110 001122334443 4556999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCC
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNP 296 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNP 296 (488)
+.. +-+.+.++...+-.. .|..++|..||-
T Consensus 79 ~v~---------------~~~aV~~Vi~gl~~~l~~G~iiID~sT~ 109 (493)
T PLN02350 79 LVK---------------AGAPVDQTIKALSEYMEPGDCIIDGGNE 109 (493)
T ss_pred ECC---------------CcHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence 962 122334443344443 577888888764
No 140
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.87 E-value=0.0036 Score=63.75 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=58.9
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cC---CCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SE---GSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~---dADiVIita 253 (488)
+||+|||.|.||..++..|+..+. +|+.||+++++++.. .+. ....+.++++ ++ ++|+||++.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~--~v~v~dr~~~~~~~~----~~~-------g~~~~~s~~~~~~~~~~advVi~~v 67 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGH--EVVGYDVNQEAVDVA----GKL-------GITARHSLEELVSKLEAPRTIWVMV 67 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCC--EEEEEECCHHHHHHH----HHC-------CCeecCCHHHHHHhCCCCCEEEEEe
Confidence 489999999999999999998886 899999998766542 221 0123345533 33 379999985
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeC
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISN 295 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TN 295 (488)
.. -+.+++++..+... .|+.++|..|+
T Consensus 68 p~---------------~~~~~~v~~~i~~~l~~g~ivid~st 95 (299)
T PRK12490 68 PA---------------GEVTESVIKDLYPLLSPGDIVVDGGN 95 (299)
T ss_pred cC---------------chHHHHHHHHHhccCCCCCEEEECCC
Confidence 21 12334444444443 46677777754
No 141
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.79 E-value=0.0073 Score=59.95 Aligned_cols=67 Identities=21% Similarity=0.258 Sum_probs=48.3
Q ss_pred ceEEEEecccchHHHHHHHHHcCC-CCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGI-YSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l-~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
|||+|||+|.||..++..|...+. ...+.++|.++++++.....+. .+..+.+. +.+++||+||++.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~---------~~~~~~~~~~~~~~aDvVilav 69 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP---------KVRIAKDNQAVVDRSDVVFLAV 69 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC---------CceEeCCHHHHHHhCCEEEEEe
Confidence 489999999999999999988774 3457889998876654322210 12233455 4578999999996
No 142
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.76 E-value=0.016 Score=61.14 Aligned_cols=73 Identities=22% Similarity=0.350 Sum_probs=51.7
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc----cccCCCcEEEEe
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI----AMSEGSRIVIIT 252 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~----eal~dADiVIit 252 (488)
++||.|||||.||+.+|+.|++.+- .+|++.|++.+++..+........ ....+-. .|. +.+++.|+||.+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v---~~~~vD~-~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKV---EALQVDA-ADVDALVALIKDFDLVINA 75 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccc---eeEEecc-cChHHHHHHHhcCCEEEEe
Confidence 5799999999999999999999885 699999999887765433321100 0011111 232 568999999999
Q ss_pred cc
Q psy12825 253 AG 254 (488)
Q Consensus 253 ag 254 (488)
+.
T Consensus 76 ~p 77 (389)
T COG1748 76 AP 77 (389)
T ss_pred CC
Confidence 73
No 143
>KOG2666|consensus
Probab=96.74 E-value=0.0022 Score=65.15 Aligned_cols=82 Identities=20% Similarity=0.121 Sum_probs=58.6
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC--------CCCCCcEEEcCCc-cccCCCc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP--------FLRSPKIESGSDI-AMSEGSR 247 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~--------~~~~~~v~~ttd~-eal~dAD 247 (488)
++|||-||||.||......++.+-..-+|.++|++..+....-.|---+.. .....++.+++|. .+++.||
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~ead 80 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEAD 80 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcc
Confidence 469999999999987666666665445999999998877654222111100 1135667778887 5899999
Q ss_pred EEEEecccccC
Q psy12825 248 IVIITAGVRSL 258 (488)
Q Consensus 248 iVIitag~~~k 258 (488)
+|++++..|.|
T Consensus 81 lvfisvntptk 91 (481)
T KOG2666|consen 81 LVFISVNTPTK 91 (481)
T ss_pred eEEEEecCCcc
Confidence 99999987765
No 144
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.74 E-value=0.0067 Score=65.75 Aligned_cols=97 Identities=15% Similarity=0.223 Sum_probs=64.7
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc----cccCCCcEEEEecc
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI----AMSEGSRIVIITAG 254 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~----eal~dADiVIitag 254 (488)
+|+|||.|.||..+|..|+.+|. +|++||+++++++........ ...+....++ +.++++|+||+++.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~--~V~v~drt~~~~~~l~~~~~~------g~~~~~~~s~~e~v~~l~~~dvIil~v~ 72 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF--TVSVYNRTPEKTDEFLAEHAK------GKKIVGAYSIEEFVQSLERPRKIMLMVK 72 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHhhccC------CCCceecCCHHHHHhhcCCCCEEEEECC
Confidence 48999999999999999999997 899999999877654322110 0112223343 34678999999862
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeC--Cch
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISN--PVD 298 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TN--Pvd 298 (488)
++ +.+.++...+..+ .++.++|..+| |.+
T Consensus 73 ----~~-----------~~v~~Vi~~l~~~L~~g~iIID~gns~~~~ 104 (467)
T TIGR00873 73 ----AG-----------APVDAVINQLLPLLEKGDIIIDGGNSHYPD 104 (467)
T ss_pred ----Cc-----------HHHHHHHHHHHhhCCCCCEEEECCCcCHHH
Confidence 21 2334444555554 57788888887 444
No 145
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.72 E-value=0.004 Score=63.39 Aligned_cols=63 Identities=14% Similarity=0.255 Sum_probs=45.9
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc----ccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA----MSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e----al~dADiVIita 253 (488)
+||+|||.|.||..++..|+..+. +|.+||+++++.+.. .+. .+....+++ .+.++|+||++.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~--~v~v~dr~~~~~~~~----~~~-------g~~~~~~~~e~~~~~~~~dvvi~~v 67 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGH--EVVGYDRNPEAVEAL----AEE-------GATGADSLEELVAKLPAPRVVWLMV 67 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCC--eEEEEECCHHHHHHH----HHC-------CCeecCCHHHHHhhcCCCCEEEEEe
Confidence 489999999999999999998886 899999998876643 211 112233443 233579999985
No 146
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.70 E-value=0.0073 Score=61.95 Aligned_cols=105 Identities=16% Similarity=0.313 Sum_probs=68.7
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.+.++|+|||+|.||..++..|...+. .+|.++|++++++...+..+.. .+....+. +.+.++|+||.+.
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~-~~V~v~~r~~~ra~~la~~~g~--------~~~~~~~~~~~l~~aDvVi~at 246 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGV-AEITIANRTYERAEELAKELGG--------NAVPLDELLELLNEADVVISAT 246 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHcCC--------eEEeHHHHHHHHhcCCEEEECC
Confidence 457899999999999998888877553 4799999998877655544421 22222233 5688999999997
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCchhHHHH
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVDVLTYI 303 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvdi~t~~ 303 (488)
+.+.. ..++... ++.. .+..++|-+++|-|+=..+
T Consensus 247 ~~~~~------------~~~~~~~---~~~~~~~~~~viDlavPrdi~~~v 282 (311)
T cd05213 247 GAPHY------------AKIVERA---MKKRSGKPRLIVDLAVPRDIEPEV 282 (311)
T ss_pred CCCch------------HHHHHHH---HhhCCCCCeEEEEeCCCCCCchhh
Confidence 54321 0112221 1222 2456889999998854443
No 147
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.68 E-value=0.013 Score=55.05 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=29.7
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
||.|||+|.+|+.++..|+..|+ .+|+|+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 69999999999999999999987 4799999864
No 148
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.013 Score=57.32 Aligned_cols=69 Identities=26% Similarity=0.408 Sum_probs=50.3
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCCc----c-ccCCCcEEEE
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSDI----A-MSEGSRIVII 251 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd~----e-al~dADiVIi 251 (488)
|+|+|+|+|.+|+++|..|...|. +++++|.++++++....+-... .-+.. .+|. + .+.+||.+|.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~--~Vv~Id~d~~~~~~~~~~~~~~------~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH--NVVLIDRDEERVEEFLADELDT------HVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC--ceEEEEcCHHHHHHHhhhhcce------EEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 689999999999999999999987 8999999998876533221111 11222 2342 3 4899999999
Q ss_pred ecc
Q psy12825 252 TAG 254 (488)
Q Consensus 252 tag 254 (488)
+.+
T Consensus 73 ~t~ 75 (225)
T COG0569 73 ATG 75 (225)
T ss_pred eeC
Confidence 853
No 149
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=96.49 E-value=0.00058 Score=70.54 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=36.0
Q ss_pred CcEEEEec-chhHHHHHHHHHhhhhHH-----HHHHHHHH-----HHhhhCCC
Q psy12825 131 QKITVVGA-GQVGMACTYSILTQTMAR-----DAVSTVDR-----LLSQVAPS 172 (488)
Q Consensus 131 ~ki~vvg~-g~vg~~~a~~~~~k~la~-----eivlid~~-----~~~e~~~~ 172 (488)
-||+|||+ |.||.++||+++.+++++ |++++|.. +.++.+|.
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl 56 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMEL 56 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHH
Confidence 49999999 999999999999999999 99999941 45555554
No 150
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.48 E-value=0.022 Score=59.28 Aligned_cols=74 Identities=22% Similarity=0.313 Sum_probs=55.0
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
..+.++|.|+|| |.+|+.++..|+.+.-..+|++++++++++.....++.+. .+ .+. +++.++|+||.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~-------~i---~~l~~~l~~aDiVv~ 221 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGG-------KI---LSLEEALPEADIVVW 221 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccc-------cH---HhHHHHHccCCEEEE
Confidence 456789999999 9999999999986533458999999988777655554321 11 133 57899999999
Q ss_pred eccccc
Q psy12825 252 TAGVRS 257 (488)
Q Consensus 252 tag~~~ 257 (488)
+++.+.
T Consensus 222 ~ts~~~ 227 (340)
T PRK14982 222 VASMPK 227 (340)
T ss_pred CCcCCc
Confidence 887654
No 151
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.47 E-value=0.023 Score=55.14 Aligned_cols=36 Identities=25% Similarity=0.489 Sum_probs=31.9
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN 211 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~ 211 (488)
.+..||+|||+|.+|+.++..|+..|+ .+|.|+|.|
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gv-g~i~lvD~D 61 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGV-GNLKLVDFD 61 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 455699999999999999999999987 489999986
No 152
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=96.45 E-value=0.0027 Score=67.08 Aligned_cols=42 Identities=12% Similarity=0.099 Sum_probs=33.9
Q ss_pred CcEEEEec-chhHHHHHHHHHhhhhHH-----HHHHH--H---HHHHhhhCCC
Q psy12825 131 QKITVVGA-GQVGMACTYSILTQTMAR-----DAVST--V---DRLLSQVAPS 172 (488)
Q Consensus 131 ~ki~vvg~-g~vg~~~a~~~~~k~la~-----eivli--d---~~~~~e~~~~ 172 (488)
-||+|||+ |+||.++||+|+.+++++ ++.++ | +++.++.+|.
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL 97 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMEL 97 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHH
Confidence 59999999 999999999999999999 34344 5 5566666654
No 153
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.45 E-value=0.00065 Score=70.14 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=36.3
Q ss_pred CcEEEEec-chhHHHHHHHHHhhhhHH-----HHHHHHH---H--HHhhhCCC
Q psy12825 131 QKITVVGA-GQVGMACTYSILTQTMAR-----DAVSTVD---R--LLSQVAPS 172 (488)
Q Consensus 131 ~ki~vvg~-g~vg~~~a~~~~~k~la~-----eivlid~---~--~~~e~~~~ 172 (488)
.||+|||+ |.||.++||+++++++++ |++++|. . +.++.+|.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl 55 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMEL 55 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhh
Confidence 59999999 999999999999999999 9999995 2 45555554
No 154
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=96.44 E-value=0.012 Score=60.88 Aligned_cols=68 Identities=13% Similarity=0.202 Sum_probs=48.6
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
+..+.+||+|||.|++|.+++..|...|+ +|+.++.+..+....+.+. . +... +. +++++||+|++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s~~~A~~~--G--------~~~~-s~~eaa~~ADVVvL 79 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGV--DVVVGLREGSKSWKKAEAD--G--------FEVL-TVAEAAKWADVIMI 79 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCC--EEEEEECCchhhHHHHHHC--C--------CeeC-CHHHHHhcCCEEEE
Confidence 55677899999999999999999988887 7888877644332222111 1 1122 44 67899999999
Q ss_pred ec
Q psy12825 252 TA 253 (488)
Q Consensus 252 ta 253 (488)
++
T Consensus 80 aV 81 (330)
T PRK05479 80 LL 81 (330)
T ss_pred cC
Confidence 96
No 155
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.41 E-value=0.024 Score=64.64 Aligned_cols=92 Identities=13% Similarity=0.281 Sum_probs=60.7
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVR 256 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~ 256 (488)
.||+|||+|.||..++..+...++..+|..+|+++++++. +.+.. . .....++. ++++++|+||++...
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~-a~~~g--~------~~~~~~~~~~~~~~aDvVilavp~- 73 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLEL-AVSLG--V------IDRGEEDLAEAVSGADVIVLAVPV- 73 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHH-HHHCC--C------CCcccCCHHHHhcCCCEEEECCCH-
Confidence 6899999999999999999988854579999999877653 22211 0 01123344 468899999999631
Q ss_pred cCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEe
Q psy12825 257 SLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIIS 294 (488)
Q Consensus 257 ~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~T 294 (488)
..+.++.+.+..+ .++.+++.++
T Consensus 74 ---------------~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 74 ---------------LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred ---------------HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 2345555555555 3455554444
No 156
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.40 E-value=0.012 Score=60.98 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=56.0
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.++|+|||+|.+|...+..+....-..+|.++++++++++..+.++++.. ..++....|+ +++.+||+||.+.
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~----g~~v~~~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL----GIPVTVARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc----CceEEEeCCHHHHHccCCEEEEee
Confidence 46899999999999877777653335699999999999988887776432 1345555676 5789999998875
No 157
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=96.38 E-value=0.045 Score=60.60 Aligned_cols=119 Identities=13% Similarity=0.086 Sum_probs=72.4
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC----CCC--CCCcEEEc--CCc---
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA----PFL--RSPKIESG--SDI--- 240 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~----~~~--~~~~v~~t--td~--- 240 (488)
..++.+.|.|+|| |.+|..++..|+..|. +|++++++.++++....++.+.. ... ....+... +|.
T Consensus 76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 76 DTKDEDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 3445678999999 9999999999998887 89999999888766555443210 000 01122211 122
Q ss_pred -cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 241 -AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 241 -eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+++.++|+||.++|............+..|..-...+.+.+.+..-. .+|+++
T Consensus 154 ~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVg-RIV~VS 207 (576)
T PLN03209 154 GPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVN-HFILVT 207 (576)
T ss_pred HHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCC-EEEEEc
Confidence 35889999999987643221111223344555566677766655433 345444
No 158
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=96.37 E-value=0.012 Score=60.80 Aligned_cols=72 Identities=13% Similarity=0.119 Sum_probs=55.0
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
..+++|||+|.+|...+..+.......+|.++|++.++++..+.++.+. ..++....+. +++++||+|+.+.
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~-----g~~v~~~~~~~eav~~aDiVitaT 200 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY-----EVPVRAATDPREAVEGCDILVTTT 200 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh-----CCcEEEeCCHHHHhccCCEEEEec
Confidence 4689999999999986666655444679999999999998877777632 1245555666 6799999999875
No 159
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.34 E-value=0.016 Score=55.80 Aligned_cols=75 Identities=11% Similarity=0.263 Sum_probs=50.8
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC-------------------hhHHHHHHHHHhhcCCCCCCCcEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN-------------------EDRCKGEMLDLQHGAPFLRSPKIE 235 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~-------------------~e~l~g~~~dL~~~~~~~~~~~v~ 235 (488)
.+..||.|+|+|.+|+.++..|+..|+ .+|.|+|.+ ..+++..+..+.... +..++.
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv-~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n---p~v~i~ 94 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGV-GTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN---SDIQVT 94 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCC-CeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC---CCCEEE
Confidence 455799999999999999999999986 589999975 223344444444432 223333
Q ss_pred EcC---C---c-cccCCCcEEEEec
Q psy12825 236 SGS---D---I-AMSEGSRIVIITA 253 (488)
Q Consensus 236 ~tt---d---~-eal~dADiVIita 253 (488)
... + . +.++++|+||.+.
T Consensus 95 ~~~~~i~~~~~~~~~~~~D~Vi~~~ 119 (202)
T TIGR02356 95 ALKERVTAENLELLINNVDLVLDCT 119 (202)
T ss_pred EehhcCCHHHHHHHHhCCCEEEECC
Confidence 221 1 1 3478999998885
No 160
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.33 E-value=0.028 Score=57.01 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=43.5
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC--ccccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD--IAMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd--~eal~dADiVIita 253 (488)
.++|+|+|.|.||..++..|...+....++=+|.+.+.++. +.++.- ..+ .+.+ .++.++||+||+++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~-a~~lgv------~d~--~~~~~~~~~~~~aD~Vivav 72 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKA-ALELGV------IDE--LTVAGLAEAAAEADLVIVAV 72 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHH-HhhcCc------ccc--cccchhhhhcccCCEEEEec
Confidence 57999999999999999999999984334444444433321 111110 011 1223 46788999999996
No 161
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=96.32 E-value=0.017 Score=57.66 Aligned_cols=126 Identities=18% Similarity=0.328 Sum_probs=80.6
Q ss_pred CCceEEEEecccchHHHHHHHHHc----CCC-----CeEEEEeCC------hhHHHHHHHHHhhcCCCCCCCcEEEcCCc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQ----GIY-----SNFCLIDSN------EDRCKGEMLDLQHGAPFLRSPKIESGSDI 240 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~----~l~-----~el~L~Di~------~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ 240 (488)
+..||+++|||+.|.+++..|... |+. ..++|+|.+ .+.+......+.+... .... ..++
T Consensus 24 ~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~---~~~~--~~~L 98 (255)
T PF03949_consen 24 SDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTN---PEKD--WGSL 98 (255)
T ss_dssp GG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSS---TTT----SSH
T ss_pred HHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCc---cccc--ccCH
Confidence 446999999999999999988765 764 789999972 2233334444444321 1111 1465
Q ss_pred -cccCCC--cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch---hHHHHHHHhcCCCCCc
Q psy12825 241 -AMSEGS--RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD---VLTYISWKLSGFPKNR 314 (488)
Q Consensus 241 -eal~dA--DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd---i~t~~~~k~sg~p~~r 314 (488)
++++++ |++|=+.+.+ |. +-+++.+.|.++|++.+|+=.+||.. +..+-+++++.- .-
T Consensus 99 ~eav~~~kPtvLIG~S~~~---g~-----------ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t~g--~a 162 (255)
T PF03949_consen 99 LEAVKGAKPTVLIGLSGQG---GA-----------FTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWTDG--RA 162 (255)
T ss_dssp HHHHHCH--SEEEECSSST---TS-----------S-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTTTS--EE
T ss_pred HHHHHhcCCCEEEEecCCC---Cc-----------CCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhCCc--eE
Confidence 679999 9888776433 21 33778889999999999999999965 566677776521 23
Q ss_pred EEeecCCh
Q psy12825 315 VIGSGTNL 322 (488)
Q Consensus 315 ViG~gt~l 322 (488)
+|++|+-.
T Consensus 163 i~AtGSpf 170 (255)
T PF03949_consen 163 IFATGSPF 170 (255)
T ss_dssp EEEESS--
T ss_pred EEecCCcc
Confidence 57886543
No 162
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.30 E-value=0.013 Score=60.55 Aligned_cols=102 Identities=11% Similarity=0.149 Sum_probs=68.6
Q ss_pred CCcEEEEecchhH--HHHHHH-HHhhhhHHHHHHHHHHHHhhhCCCCCCCCceEEEEecccchHHHHHHHHHcCCCCeEE
Q psy12825 130 DQKITVVGAGQVG--MACTYS-ILTQTMARDAVSTVDRLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFC 206 (488)
Q Consensus 130 ~~ki~vvg~g~vg--~~~a~~-~~~k~la~eivlid~~~~~e~~~~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~ 206 (488)
..-++++.++.+. .+.|.+ +-.|-|++ ....+|+|||+|.+|...+..++...-..+|.
T Consensus 95 G~p~a~~d~~~lT~~RTaa~sala~~~la~------------------~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~ 156 (325)
T PRK08618 95 GEVLAILDGTYLTQIRTGALSGVATKYLAR------------------EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVR 156 (325)
T ss_pred CceEEEEccchhhhhhHHHHHHHHHHHhcC------------------CCCcEEEEECCcHHHHHHHHHHHhcCCccEEE
Confidence 3467788888765 222333 22233321 12458999999999988777665433347999
Q ss_pred EEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 207 LIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 207 L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
++|+++++.+....++.+.. ..++....|+ +++.+||+||.+.
T Consensus 157 v~~r~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 157 VYSRTFEKAYAFAQEIQSKF----NTEIYVVNSADEAIEEADIIVTVT 200 (325)
T ss_pred EECCCHHHHHHHHHHHHHhc----CCcEEEeCCHHHHHhcCCEEEEcc
Confidence 99999999888777776431 1244445666 5789999999885
No 163
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.23 E-value=0.027 Score=55.27 Aligned_cols=101 Identities=27% Similarity=0.439 Sum_probs=63.6
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCC-CCeEEEEeCC----hhHH---HHHHHHHhhcCCCCCCCcEEEcCCc-cccCC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGI-YSNFCLIDSN----EDRC---KGEMLDLQHGAPFLRSPKIESGSDI-AMSEG 245 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l-~~el~L~Di~----~e~l---~g~~~dL~~~~~~~~~~~v~~ttd~-eal~d 245 (488)
.+..||.|+|||.+|.+++..|...|. .++|.++|++ .++. ......+.+... . ... ..++ +++++
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~--~-~~~--~~~l~~~l~~ 97 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETN--P-EKT--GGTLKEALKG 97 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhc--c-Ccc--cCCHHHHHhc
Confidence 455799999999999999999988776 1379999998 4443 222233332210 0 111 1244 67889
Q ss_pred CcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 246 SRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 246 ADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
+|+||.+.+ +|+- . .+..+.| ++..+++..+||..
T Consensus 98 ~dvlIgaT~----~G~~-----~------~~~l~~m---~~~~ivf~lsnP~~ 132 (226)
T cd05311 98 ADVFIGVSR----PGVV-----K------KEMIKKM---AKDPIVFALANPVP 132 (226)
T ss_pred CCEEEeCCC----CCCC-----C------HHHHHhh---CCCCEEEEeCCCCC
Confidence 999999864 3331 1 1222333 36777878889964
No 164
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.22 E-value=0.03 Score=56.63 Aligned_cols=127 Identities=21% Similarity=0.372 Sum_probs=84.4
Q ss_pred CCCceEEEEecccchHHHHHHHHHc----CC-----CCeEEEEeCCh----h--HHHHHHHHHhhcCCCCCCCcEEEcCC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQ----GI-----YSNFCLIDSNE----D--RCKGEMLDLQHGAPFLRSPKIESGSD 239 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~----~l-----~~el~L~Di~~----e--~l~g~~~dL~~~~~~~~~~~v~~ttd 239 (488)
.+..||+|.|||+.|.+++..|... |+ ...++++|.+- + .+......+.+.. .. ....+
T Consensus 23 l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~---~~---~~~~~ 96 (279)
T cd05312 23 LSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD---EE---KEGKS 96 (279)
T ss_pred hhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc---Cc---ccCCC
Confidence 3456999999999999999888764 65 25899999831 1 1333333343321 00 11245
Q ss_pred c-cccC--CCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch---hHHHHHHHhcCCCCC
Q psy12825 240 I-AMSE--GSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD---VLTYISWKLSGFPKN 313 (488)
Q Consensus 240 ~-eal~--dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd---i~t~~~~k~sg~p~~ 313 (488)
+ ++++ ++|++|=+.+.+ |. +-+++.+.|.++|++.+|+-.+||.. +..+-+++.+. -+
T Consensus 97 L~e~i~~v~ptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~--G~ 160 (279)
T cd05312 97 LLEVVKAVKPTVLIGLSGVG---GA-----------FTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD--GR 160 (279)
T ss_pred HHHHHHhcCCCEEEEeCCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc--CC
Confidence 5 6788 999888765432 21 33678889999999999999999964 56666777652 13
Q ss_pred cEEeecCChH
Q psy12825 314 RVIGSGTNLD 323 (488)
Q Consensus 314 rViG~gt~ld 323 (488)
.+|++|+-.+
T Consensus 161 ai~ATGsPf~ 170 (279)
T cd05312 161 ALFASGSPFP 170 (279)
T ss_pred EEEEeCCCCC
Confidence 5888876544
No 165
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.22 E-value=0.021 Score=57.20 Aligned_cols=67 Identities=22% Similarity=0.292 Sum_probs=46.4
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCe-EEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSN-FCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~e-l~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~dADiVIita 253 (488)
++||+|||+|.||..++..+...+...+ +.++|.+.++++....+. . ....+|+++ +.++|+|++++
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~--------~--~~~~~~~~ell~~~DvVvi~a 69 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT--------G--AKACLSIDELVEDVDLVVECA 69 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc--------C--CeeECCHHHHhcCCCEEEEcC
Confidence 3699999999999999888876542123 568899987765432211 1 123356654 48999999996
No 166
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.20 E-value=0.029 Score=57.95 Aligned_cols=31 Identities=26% Similarity=0.513 Sum_probs=28.8
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
.||+|||+|+||.++||.+.++++++ ++++|
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvD 37 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGD-VVLFD 37 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCe-EEEEe
Confidence 69999999999999999999999954 99988
No 167
>PRK06141 ornithine cyclodeaminase; Validated
Probab=96.18 E-value=0.017 Score=59.28 Aligned_cols=72 Identities=13% Similarity=0.168 Sum_probs=53.8
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
..+|+|||+|.+|...+..+....-..+|.++|+++++++..+.++.+. ...+....+. +++++||+||.+.
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~-----g~~~~~~~~~~~av~~aDIVi~aT 197 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQ-----GFDAEVVTDLEAAVRQADIISCAT 197 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhc-----CCceEEeCCHHHHHhcCCEEEEee
Confidence 4689999999999998876665322468999999999988887777542 1134445565 5789999997664
No 168
>PLN02712 arogenate dehydrogenase
Probab=96.18 E-value=0.047 Score=61.81 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=47.7
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-c-CCCcEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-S-EGSRIVI 250 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l-~dADiVI 250 (488)
...+++||+|||.|.||..++..|...|. +|..+|.+.... .+.++ .+...+++++ + .+||+||
T Consensus 48 ~~~~~~kIgIIG~G~mG~slA~~L~~~G~--~V~~~dr~~~~~--~A~~~----------Gv~~~~d~~e~~~~~aDvVi 113 (667)
T PLN02712 48 DNTTQLKIAIIGFGNYGQFLAKTLISQGH--TVLAHSRSDHSL--AARSL----------GVSFFLDPHDLCERHPDVIL 113 (667)
T ss_pred ccCCCCEEEEEccCHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHc----------CCEEeCCHHHHhhcCCCEEE
Confidence 55567899999999999999999988875 899999975431 11111 1122445543 3 5799999
Q ss_pred Eec
Q psy12825 251 ITA 253 (488)
Q Consensus 251 ita 253 (488)
++.
T Consensus 114 Lav 116 (667)
T PLN02712 114 LCT 116 (667)
T ss_pred EcC
Confidence 996
No 169
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=96.16 E-value=0.016 Score=59.02 Aligned_cols=62 Identities=18% Similarity=0.233 Sum_probs=45.4
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
|||+|||.|.||..++..|+..++ ++.++|+++. .+. +.... .....+. +..++||+||++.
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~--~v~v~~~~~~-~~~----~~~~g-------~~~~~s~~~~~~~advVi~~v 63 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGH--QLHVTTIGPV-ADE----LLSLG-------AVSVETARQVTEASDIIFIMV 63 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC--eEEEEeCCHh-HHH----HHHcC-------CeecCCHHHHHhcCCEEEEeC
Confidence 489999999999999999999987 8899999763 222 22210 1122344 5578999999996
No 170
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=96.15 E-value=0.034 Score=58.63 Aligned_cols=52 Identities=15% Similarity=0.325 Sum_probs=41.9
Q ss_pred CCceEEEEe-cccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 176 PDQKITVVG-AGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIG-AG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
..+||+||| .|.||..++..|...|+ +|.++|+++. .+. +.+++||+||+++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~------------------------~~~~~~~~~aDlVilav 150 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW------------------------DRAEDILADAGMVIVSV 150 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc------------------------hhHHHHHhcCCEEEEeC
Confidence 347899999 79999999999999886 8999998531 122 3467999999996
No 171
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=96.13 E-value=0.03 Score=57.02 Aligned_cols=167 Identities=20% Similarity=0.272 Sum_probs=96.2
Q ss_pred EEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE---EcCC---c----cccC--CC
Q psy12825 180 ITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE---SGSD---I----AMSE--GS 246 (488)
Q Consensus 180 IaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~---~ttd---~----eal~--dA 246 (488)
|.|.|| |++|+.++..|+..+. .+|+++|.++..+..+..++....... ..+.. .-.| + +.++ +.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~-~v~~~~~~vigDvrd~~~l~~~~~~~~p 78 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDP-KVRFEIVPVIGDVRDKERLNRIFEEYKP 78 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--T-TCEEEEE--CTSCCHHHHHHHHTT--T-
T ss_pred CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhccccc-CcccccCceeecccCHHHHHHHHhhcCC
Confidence 679998 9999999999988875 589999999999988888885432111 11111 1233 2 3567 99
Q ss_pred cEEEEecccccCCC--cchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe----CCchhHHHHHHHhcCCCCCcEEeecC
Q psy12825 247 RIVIITAGVRSLVG--ETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS----NPVDVLTYISWKLSGFPKNRVIGSGT 320 (488)
Q Consensus 247 DiVIitag~~~k~G--~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T----NPvdi~t~~~~k~sg~p~~rViG~gt 320 (488)
|+|+-+|....-|- ....+.+..|+-=-+.+++...++.-+.+|.+-| ||.++| |.
T Consensus 79 diVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~Ptnvm----------------Ga-- 140 (293)
T PF02719_consen 79 DIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVM----------------GA-- 140 (293)
T ss_dssp SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHH----------------HH--
T ss_pred CEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHH----------------HH--
Confidence 99999985432221 2345667788877788888888887777666665 566544 22
Q ss_pred ChHHHHHHHHHHHHhCCCC----CCceeEEEeec---CCCcccccccceecCcccc
Q psy12825 321 NLDSMRFRVLLAQKLGLSP----ESVHGFIIGEH---GDSSVPVWSGVNVAGVTLK 369 (488)
Q Consensus 321 ~lds~R~~~~lA~~Lgv~p----~~V~~~V~G~H---G~~~vp~~S~a~v~g~pl~ 369 (488)
+-|+...+....+... ..+.+.=+||- ..+.+|.|.+-.-.|.|+.
T Consensus 141 ---tKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~GSVip~F~~Qi~~g~PlT 193 (293)
T PF02719_consen 141 ---TKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRGSVIPLFKKQIKNGGPLT 193 (293)
T ss_dssp ---HHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGTTSCHHHHHHHHHTTSSEE
T ss_pred ---HHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCCCcHHHHHHHHHHcCCcce
Confidence 2333333444444333 11122223433 2467888887766777764
No 172
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.12 E-value=0.028 Score=56.10 Aligned_cols=129 Identities=16% Similarity=0.241 Sum_probs=84.2
Q ss_pred CCCceEEEEecccchHHHHHHHHHcC----C-----CCeEEEEeCCh----hH--HHHHHHHHhhcCCCCCCCcEEEcCC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQG----I-----YSNFCLIDSNE----DR--CKGEMLDLQHGAPFLRSPKIESGSD 239 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~----l-----~~el~L~Di~~----e~--l~g~~~dL~~~~~~~~~~~v~~ttd 239 (488)
.+..||+|.|||+.|.+++..|...+ + ...++++|..- ++ +......+.+. ..... ...+
T Consensus 23 l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~---~~~~~--~~~~ 97 (254)
T cd00762 23 ISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARF---ANPER--ESGD 97 (254)
T ss_pred hhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHH---cCccc--ccCC
Confidence 34469999999999999998886543 2 23899999731 11 22222222211 11111 1246
Q ss_pred c-cccC--CCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch---hHHHHHHHhcCCCCC
Q psy12825 240 I-AMSE--GSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD---VLTYISWKLSGFPKN 313 (488)
Q Consensus 240 ~-eal~--dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd---i~t~~~~k~sg~p~~ 313 (488)
+ ++++ ++|++|=..+++ |. +-+++.+.|.++|++.+|+=.+||.. +..+-+++++. -+
T Consensus 98 L~eav~~~kptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~--G~ 161 (254)
T cd00762 98 LEDAVEAAKPDFLIGVSRVG---GA-----------FTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATE--GR 161 (254)
T ss_pred HHHHHHhhCCCEEEEeCCCC---CC-----------CCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcC--CC
Confidence 5 6788 999888765433 21 33678888999999999999999974 66777777762 24
Q ss_pred cEEeecCChHH
Q psy12825 314 RVIGSGTNLDS 324 (488)
Q Consensus 314 rViG~gt~lds 324 (488)
.+|++|...+.
T Consensus 162 ai~AtGspf~p 172 (254)
T cd00762 162 AIFASGSPFHP 172 (254)
T ss_pred EEEEECCCCCC
Confidence 68999876543
No 173
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.10 E-value=0.02 Score=59.21 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=55.7
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
..+++|||+|.++...+..|+...-..+|.+++++.++++..+.++.+.. ..++....+. +++.+||+||.+.
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~----g~~v~~~~~~~~av~~aDiVvtaT 202 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL----GIDVTAATDPRAAMSGADIIVTTT 202 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc----CceEEEeCCHHHHhccCCEEEEec
Confidence 46899999999999888888643334689999999999988887776431 1244445565 5689999999985
No 174
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=96.08 E-value=0.018 Score=58.29 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=45.2
Q ss_pred EEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 182 VVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 182 IIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
|||.|.||..++..|+..+. +|.+||+++++.+.. ... .+..+.++ +.+++||+||++.
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~--~V~v~dr~~~~~~~l----~~~-------g~~~~~s~~~~~~~advVil~v 60 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGH--PVRVFDLFPDAVEEA----VAA-------GAQAAASPAEAAEGADRVITML 60 (288)
T ss_pred CCcccHhHHHHHHHHHhCCC--eEEEEeCCHHHHHHH----HHc-------CCeecCCHHHHHhcCCEEEEeC
Confidence 58999999999999998887 899999998776543 221 11234455 5789999999996
No 175
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=96.05 E-value=0.031 Score=57.61 Aligned_cols=65 Identities=12% Similarity=0.184 Sum_probs=44.0
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeC-ChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDS-NEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di-~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIita 253 (488)
+.+||+|||+|+||.+++..|...++ ++++++. +.+.++. +... .+..++..+++++||+|++++
T Consensus 2 ~~kkIgiIG~G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~~~----a~~~-------Gv~~~s~~ea~~~ADiVvLaV 67 (314)
T TIGR00465 2 KGKTVAIIGYGSQGHAQALNLRDSGL--NVIVGLRKGGASWKK----ATED-------GFKVGTVEEAIPQADLIMNLL 67 (314)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCCC--eEEEEECcChhhHHH----HHHC-------CCEECCHHHHHhcCCEEEEeC
Confidence 45799999999999999999998886 6666554 3333322 1111 011222335789999999997
No 176
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.05 E-value=0.064 Score=55.19 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHH-HhhhCC--CCCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCC
Q psy12825 153 TMARDAVSTVDRL-LSQVAP--SIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL 229 (488)
Q Consensus 153 ~la~eivlid~~~-~~e~~~--~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~ 229 (488)
.+++.+...+... .++... ......++|+|||.|.||..++..|..-|. +|..||...+...+ .
T Consensus 109 ~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~--~V~~~~~~~~~~~~----~------- 175 (312)
T PRK15469 109 HWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTWGF--PLRCWSRSRKSWPG----V------- 175 (312)
T ss_pred HHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCCCCCCC----c-------
Confidence 4666665544322 122211 134567899999999999999998876666 89999975432110 0
Q ss_pred CCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 230 RSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 230 ~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
..+....++ +.+++||+|+++.. .. ..|..++- .+.+....|++++||++-
T Consensus 176 --~~~~~~~~l~e~l~~aDvvv~~lP-----lt------~~T~~li~--~~~l~~mk~ga~lIN~aR 227 (312)
T PRK15469 176 --QSFAGREELSAFLSQTRVLINLLP-----NT------PETVGIIN--QQLLEQLPDGAYLLNLAR 227 (312)
T ss_pred --eeecccccHHHHHhcCCEEEECCC-----CC------HHHHHHhH--HHHHhcCCCCcEEEECCC
Confidence 011111244 56899999999852 11 12223332 344556668899999873
No 177
>PLN00203 glutamyl-tRNA reductase
Probab=96.02 E-value=0.027 Score=61.79 Aligned_cols=107 Identities=14% Similarity=0.281 Sum_probs=68.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
....+|+|||+|.||..++..|...|. .+|++++++.++++.....+... ...+....+. +.+.+||+||.+.
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~-~~V~V~nRs~era~~La~~~~g~-----~i~~~~~~dl~~al~~aDVVIsAT 337 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGC-TKMVVVNRSEERVAALREEFPDV-----EIIYKPLDEMLACAAEADVVFTST 337 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHhCCC-----ceEeecHhhHHHHHhcCCEEEEcc
Confidence 557899999999999999999987774 47999999998887655444211 0111122343 5789999999886
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhc----cCCCcEEEEEeCCchhH
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAK----GSPDCILLIISNPVDVL 300 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~----~~p~a~vIv~TNPvdi~ 300 (488)
+.+... +..+..+.+.. ....-++|-++.|-|+=
T Consensus 338 ~s~~pv-------------I~~e~l~~~~~~~~~~~~~~~~IDLAvPRdId 375 (519)
T PLN00203 338 SSETPL-------------FLKEHVEALPPASDTVGGKRLFVDISVPRNVG 375 (519)
T ss_pred CCCCCe-------------eCHHHHHHhhhcccccCCCeEEEEeCCCCCCc
Confidence 433210 12233333321 11234678889997643
No 178
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.01 E-value=0.025 Score=60.52 Aligned_cols=108 Identities=15% Similarity=0.250 Sum_probs=68.4
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.+..+|+|||+|.+|..++..|...|. .+|+++|++.+++...+.++.. .+....+. +.+.++|+||.+.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~-~~V~v~~r~~~ra~~la~~~g~--------~~~~~~~~~~~l~~aDvVI~aT 250 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGV-RKITVANRTLERAEELAEEFGG--------EAIPLDELPEALAEADIVISST 250 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCC-CeEEEEeCCHHHHHHHHHHcCC--------cEeeHHHHHHHhccCCEEEECC
Confidence 456799999999999999988887664 4799999998877655444321 12222333 5688999999987
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHH
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTY 302 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~ 302 (488)
+.+... . +.+.++.... .+...+.++|-+++|-|+=..
T Consensus 251 ~s~~~~-i--------~~~~l~~~~~--~~~~~~~vviDla~Prdid~~ 288 (423)
T PRK00045 251 GAPHPI-I--------GKGMVERALK--ARRHRPLLLVDLAVPRDIEPE 288 (423)
T ss_pred CCCCcE-E--------cHHHHHHHHh--hccCCCeEEEEeCCCCCCccc
Confidence 544211 0 1111111110 122345788999999875433
No 179
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=96.00 E-value=0.024 Score=58.15 Aligned_cols=113 Identities=13% Similarity=0.162 Sum_probs=71.8
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCcE
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSRI 248 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dADi 248 (488)
+.++|.|+|| |.+|++++..|+..+...+|+++|.+.........++.. ....+... +|+ +.+++.|+
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~-----~~~~~v~~Dl~d~~~l~~~~~~iD~ 77 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA-----PCLRFFIGDVRDKERLTRALRGVDY 77 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC-----CcEEEEEccCCCHHHHHHHHhcCCE
Confidence 4678999998 999999999999876334899999876544322222211 01111111 232 35678999
Q ss_pred EEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 249 VIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 249 VIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
||.+++....+ ..+..+.+..|+.-...+.+.+.+.... .+|++|
T Consensus 78 Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S 124 (324)
T TIGR03589 78 VVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS 124 (324)
T ss_pred EEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 99998754222 2234566788888888888887776433 455554
No 180
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.00 E-value=0.036 Score=54.18 Aligned_cols=95 Identities=21% Similarity=0.292 Sum_probs=65.0
Q ss_pred ceEEEEecccchHHHHHHHHHcC-CCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cCCCcEEEEeccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQG-IYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SEGSRIVIITAGV 255 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~-l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~dADiVIitag~ 255 (488)
+||.|||+|.+|..+...+-... -+.-+.+||.+.+++.....-+.. +. .++.++ +.+.|++|++++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~-------~~---~s~ide~~~~~DlvVEaAS- 69 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGR-------RC---VSDIDELIAEVDLVVEAAS- 69 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCC-------Cc---cccHHHHhhccceeeeeCC-
Confidence 58999999999988766554442 245678899999877643222211 11 145544 599999999974
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
.+-++++..++=+...|.+|+-++--+|
T Consensus 70 ---------------~~Av~e~~~~~L~~g~d~iV~SVGALad 97 (255)
T COG1712 70 ---------------PEAVREYVPKILKAGIDVIVMSVGALAD 97 (255)
T ss_pred ---------------HHHHHHHhHHHHhcCCCEEEEechhccC
Confidence 3567888888888877876665554443
No 181
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.96 E-value=0.031 Score=49.90 Aligned_cols=73 Identities=21% Similarity=0.381 Sum_probs=49.2
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh-------------------hHHHHHHHHHhhcCCCCCCCcEEEc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE-------------------DRCKGEMLDLQHGAPFLRSPKIESG 237 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~-------------------e~l~g~~~dL~~~~~~~~~~~v~~t 237 (488)
..||+|+|+|.+|+.++..|+..|+ .++.|+|.+. .+.+.....+.... +..++...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv-~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~n---p~~~v~~~ 77 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV-GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEIN---PDVEVEAI 77 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT-SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHS---TTSEEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC-CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhc---Cceeeeee
Confidence 4699999999999999999999987 5899999521 23444444444432 23444432
Q ss_pred CC-c------cccCCCcEEEEec
Q psy12825 238 SD-I------AMSEGSRIVIITA 253 (488)
Q Consensus 238 td-~------eal~dADiVIita 253 (488)
.. . +.++++|+||.+.
T Consensus 78 ~~~~~~~~~~~~~~~~d~vi~~~ 100 (135)
T PF00899_consen 78 PEKIDEENIEELLKDYDIVIDCV 100 (135)
T ss_dssp ESHCSHHHHHHHHHTSSEEEEES
T ss_pred ecccccccccccccCCCEEEEec
Confidence 21 1 3477999999885
No 182
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=95.95 E-value=0.025 Score=57.85 Aligned_cols=73 Identities=10% Similarity=0.044 Sum_probs=57.0
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
...++|||+|..+...+..++.-....+|.+||+++++++..+.++.+.. ..++....+. +++.+||+|+.+.
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~----~~~v~~~~~~~eav~~aDIV~taT 190 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF----GVDIRPVDNAEAALRDADTITSIT 190 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc----CCcEEEeCCHHHHHhcCCEEEEec
Confidence 46899999999998877766654446799999999999998888887632 2356655666 6799999999764
No 183
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.94 E-value=0.024 Score=57.99 Aligned_cols=72 Identities=13% Similarity=0.082 Sum_probs=54.3
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAG 254 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag 254 (488)
..+|+|||+|.+|...+..+.......+|.++|+++++++..+.++.+. ...+. ..+. +++.+||+||.+..
T Consensus 125 ~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~-----~~~~~-~~~~~~av~~aDiVitaT~ 197 (304)
T PRK07340 125 PGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL-----GPTAE-PLDGEAIPEAVDLVVTATT 197 (304)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-----CCeeE-ECCHHHHhhcCCEEEEccC
Confidence 4689999999999998888865322368999999999998887777642 11233 3455 57999999999853
No 184
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=95.93 E-value=0.021 Score=60.97 Aligned_cols=107 Identities=17% Similarity=0.248 Sum_probs=67.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.+..+|+|+|+|.+|..++..|...|. .+|+++|++.++++..+..+.. ......+. +.+.++|+||.+.
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~la~~~g~--------~~i~~~~l~~~l~~aDvVi~aT 248 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGV-GKILIANRTYERAEDLAKELGG--------EAVKFEDLEEYLAEADIVISST 248 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcCC--------eEeeHHHHHHHHhhCCEEEECC
Confidence 456799999999999999999887763 4899999998877655444321 11112233 5688999999996
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHH
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTY 302 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~ 302 (488)
+.+..- . +.+.++.. +..-....+++-+++|-|+=..
T Consensus 249 ~s~~~i-i--------~~e~l~~~---~~~~~~~~~viDla~Prdid~~ 285 (417)
T TIGR01035 249 GAPHPI-V--------SKEDVERA---LRERTRPLFIIDIAVPRDVDPA 285 (417)
T ss_pred CCCCce-E--------cHHHHHHH---HhcCCCCeEEEEeCCCCCCChh
Confidence 544211 1 11111111 1111124578889999875443
No 185
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=95.90 E-value=0.024 Score=58.33 Aligned_cols=71 Identities=11% Similarity=0.160 Sum_probs=51.7
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.+++|||+|..+...+..++.--...+|.+||+++++++..+.++.+ . ...+....|. +++++||+|+.+.
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~----~~~v~~~~~~~~av~~aDii~taT 200 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L----GVPVVAVDSAEEAVRGADIIVTAT 200 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C----CTCEEEESSHHHHHTTSSEEEE--
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c----cccceeccchhhhcccCCEEEEcc
Confidence 48999999999988777665533368999999999999998888887 2 3466777776 6899999988764
No 186
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.89 E-value=0.059 Score=57.63 Aligned_cols=122 Identities=20% Similarity=0.248 Sum_probs=71.2
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh-hHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE-DRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~-e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
++.++|.|+|+|.+|..+|..|+..|. +|+++|.+. +.+.....++... ..++...... +...++|+||.+
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~d~vv~~ 75 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGEL-----GIELVLGEYPEEFLEGVDLVVVS 75 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc-----CCEEEeCCcchhHhhcCCEEEEC
Confidence 356799999999999999999999997 899999975 3333333344321 1223222222 346789999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch------hHHHHHHH
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD------VLTYISWK 306 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd------i~t~~~~k 306 (488)
++.+... ......-..++++++..+...... + ..+|-+|-... ++++++..
T Consensus 76 ~g~~~~~-~~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 76 PGVPLDS-PPVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred CCCCCCC-HHHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHH
Confidence 8764211 111111234566655544433322 2 34666665543 55565543
No 187
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.86 E-value=0.088 Score=48.60 Aligned_cols=90 Identities=27% Similarity=0.332 Sum_probs=63.8
Q ss_pred EEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCcEEEEe
Q psy12825 180 ITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSRIVIIT 252 (488)
Q Consensus 180 IaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dADiVIit 252 (488)
|+|+|| |.+|..++..|+.++. +|+++-+++++++. + ...++... .|+ ++++++|.||.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~~~~------~-----~~~~~~~~d~~d~~~~~~al~~~d~vi~~ 67 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSKAED------S-----PGVEIIQGDLFDPDSVKAALKGADAVIHA 67 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGGHHH------C-----TTEEEEESCTTCHHHHHHHHTTSSEEEEC
T ss_pred eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchhccc------c-----cccccceeeehhhhhhhhhhhhcchhhhh
Confidence 789999 9999999999999995 99999999886654 1 11122221 232 479999999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
++.+.+ .....+.+.+.+++.... .++++|
T Consensus 68 ~~~~~~-----------~~~~~~~~~~a~~~~~~~-~~v~~s 97 (183)
T PF13460_consen 68 AGPPPK-----------DVDAAKNIIEAAKKAGVK-RVVYLS 97 (183)
T ss_dssp CHSTTT-----------HHHHHHHHHHHHHHTTSS-EEEEEE
T ss_pred hhhhcc-----------cccccccccccccccccc-cceeee
Confidence 864433 156677788888776544 345544
No 188
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.83 E-value=0.036 Score=56.35 Aligned_cols=104 Identities=14% Similarity=0.119 Sum_probs=65.3
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
....++|+|+|+|.+|..++..|...|. +|.++|++++++... ... . .......++ +.++++|+||++
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~--~V~v~~R~~~~~~~~-~~~--g------~~~~~~~~l~~~l~~aDiVint 216 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA--RVFVGARSSADLARI-TEM--G------LIPFPLNKLEEKVAEIDIVINT 216 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHH-HHC--C------CeeecHHHHHHHhccCCEEEEC
Confidence 4567899999999999999999987775 899999988654321 111 0 111112233 468899999998
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEE-eCCchhHHHHHHH
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLII-SNPVDVLTYISWK 306 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~-TNPvdi~t~~~~k 306 (488)
.... ++ + . ..+....|++++|++ ++|..+--..+++
T Consensus 217 ~P~~---------ii--~----~---~~l~~~k~~aliIDlas~Pg~tdf~~Ak~ 253 (287)
T TIGR02853 217 IPAL---------VL--T----A---DVLSKLPKHAVIIDLASKPGGTDFEYAKK 253 (287)
T ss_pred CChH---------Hh--C----H---HHHhcCCCCeEEEEeCcCCCCCCHHHHHH
Confidence 6211 11 1 1 223444567888877 4775532244444
No 189
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.82 E-value=0.029 Score=56.86 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=54.3
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.+.+++.|||||.++.++++.|+..|. .+|.+++++.++++..+.++.... ....+....+. +.+.++|+||.+.
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~-~~i~I~nRt~~ka~~La~~~~~~~---~~~~~~~~~~~~~~~~~~DiVInaT 198 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGV-TDITVINRNPDKLSRLVDLGVQVG---VITRLEGDSGGLAIEKAAEVLVSTV 198 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhhhcC---cceeccchhhhhhcccCCCEEEECC
Confidence 456789999999999999999998875 479999999998887776654321 00011111122 4568899999986
Q ss_pred cc
Q psy12825 254 GV 255 (488)
Q Consensus 254 g~ 255 (488)
..
T Consensus 199 p~ 200 (282)
T TIGR01809 199 PA 200 (282)
T ss_pred CC
Confidence 43
No 190
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=95.77 E-value=0.081 Score=56.89 Aligned_cols=110 Identities=17% Similarity=0.112 Sum_probs=70.6
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc--cccCCCcEEEEe
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI--AMSEGSRIVIIT 252 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~--eal~dADiVIit 252 (488)
+.|||.|+|+ |.+|+.++..|+.+|. +|+.+|........ .+.+... .....+. ..|. ..+.++|+||-+
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~~~~~---~~~~~~~-~~~~~~~-~~Di~~~~~~~~D~ViHl 191 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFTGRKE---NLVHLFG-NPRFELI-RHDVVEPILLEVDQIYHL 191 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCccHh---Hhhhhcc-CCceEEE-ECccccccccCCCEEEEC
Confidence 4589999998 9999999999999886 89999974321111 1111110 0111222 2342 357899999999
Q ss_pred ccccc--CCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 253 AGVRS--LVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 253 ag~~~--k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
++... ....+..+.+..|+..-..+.+.+.+... .+|+++
T Consensus 192 Aa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~S 233 (436)
T PLN02166 192 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTS 233 (436)
T ss_pred ceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEEC
Confidence 86432 11224556778899988889888887643 455554
No 191
>PRK08605 D-lactate dehydrogenase; Validated
Probab=95.76 E-value=0.025 Score=58.59 Aligned_cols=65 Identities=23% Similarity=0.341 Sum_probs=46.4
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
....++|+|||+|.+|..++..|+. ++.-+|..+|.+..... ... +....++ +.+++||+|+++
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~------~~~--------~~~~~~l~ell~~aDvIvl~ 207 (332)
T PRK08605 143 SIKDLKVAVIGTGRIGLAVAKIFAK-GYGSDVVAYDPFPNAKA------ATY--------VDYKDTIEEAVEGADIVTLH 207 (332)
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHh-cCCCEEEEECCCccHhH------Hhh--------ccccCCHHHHHHhCCEEEEe
Confidence 4567899999999999999998853 44448999998754221 111 1123455 568999999999
Q ss_pred c
Q psy12825 253 A 253 (488)
Q Consensus 253 a 253 (488)
.
T Consensus 208 l 208 (332)
T PRK08605 208 M 208 (332)
T ss_pred C
Confidence 6
No 192
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.76 E-value=0.087 Score=57.77 Aligned_cols=218 Identities=17% Similarity=0.201 Sum_probs=129.3
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE--Ec--CCc----ccc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE--SG--SDI----AMS 243 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~--~t--td~----eal 243 (488)
+-.+.+.|.|.|| |++|+.+...++..+. .+|+++|.++..+..+..++.+.. + ..++. .. .|+ .++
T Consensus 246 ~~~~gK~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~--~-~~~~~~~igdVrD~~~~~~~~ 321 (588)
T COG1086 246 AMLTGKTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKF--P-ELKLRFYIGDVRDRDRVERAM 321 (588)
T ss_pred hHcCCCEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhC--C-CcceEEEecccccHHHHHHHH
Confidence 4446789999999 9999999998888754 699999999999988888888753 2 22222 11 233 468
Q ss_pred CC--CcEEEEecccccCCCcc--hHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe----CCchhHHHHHHHhcCCCCCcE
Q psy12825 244 EG--SRIVIITAGVRSLVGET--RLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS----NPVDVLTYISWKLSGFPKNRV 315 (488)
Q Consensus 244 ~d--ADiVIitag~~~k~G~~--r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T----NPvdi~t~~~~k~sg~p~~rV 315 (488)
++ .|+|+=+|....-|-.+ ..+-+..|+-=-..+++...++.=+.++.+-| ||.|+|
T Consensus 322 ~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvm--------------- 386 (588)
T COG1086 322 EGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVM--------------- 386 (588)
T ss_pred hcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHh---------------
Confidence 88 99999998655445433 45556777777778888877776666566655 666654
Q ss_pred EeecCChHHHHHHHHHHHHhCCCC----CCcee----EEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHH
Q psy12825 316 IGSGTNLDSMRFRVLLAQKLGLSP----ESVHG----FIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRL 387 (488)
Q Consensus 316 iG~gt~lds~R~~~~lA~~Lgv~p----~~V~~----~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el 387 (488)
|. +-|+...+...++-.. ..+.+ -|+|.- .+.+|+|.+---.|.|+.=.-|....+|- ...|-
T Consensus 387 -Ga-----TKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSr-GSViPlFk~QI~~GgplTvTdp~mtRyfM--TI~EA 457 (588)
T COG1086 387 -GA-----TKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSR-GSVIPLFKKQIAEGGPLTVTDPDMTRFFM--TIPEA 457 (588)
T ss_pred -hH-----HHHHHHHHHHHHhhccCCCCcEEEEEEecceecCC-CCCHHHHHHHHHcCCCccccCCCceeEEE--EHHHH
Confidence 22 2233333333332211 11212 355543 47899998766666665422122110110 12334
Q ss_pred HHHHhhhHHHHHHhcCCcch----hhHHHHHHHHHHHH
Q psy12825 388 HADVVNSAYEVIKLKGYTSW----ALGLSVASISHTLL 421 (488)
Q Consensus 388 ~~~v~~~~~eIi~~kg~t~~----s~A~a~~~ii~aIl 421 (488)
.+.|.+++.. .+|+.-| |...-+.++++++.
T Consensus 458 v~LVlqA~a~---~~gGeifvldMGepvkI~dLAk~mi 492 (588)
T COG1086 458 VQLVLQAGAI---AKGGEIFVLDMGEPVKIIDLAKAMI 492 (588)
T ss_pred HHHHHHHHhh---cCCCcEEEEcCCCCeEHHHHHHHHH
Confidence 4444444422 3343333 34445677888774
No 193
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.74 E-value=0.025 Score=54.66 Aligned_cols=69 Identities=22% Similarity=0.294 Sum_probs=46.9
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCCc--cccCCCcEEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSDI--AMSEGSRIVII 251 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd~--eal~dADiVIi 251 (488)
.+.+||.|||+|.+|..-+..|+..|- .|++++.+.. . ...++.+. .++.. ..+| +++.++|+||.
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga--~VtVvsp~~~--~-~l~~l~~~------~~i~~~~~~~~~~dl~~~~lVi~ 75 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA--QLRVIAEELE--S-ELTLLAEQ------GGITWLARCFDADILEGAFLVIA 75 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC--EEEEEcCCCC--H-HHHHHHHc------CCEEEEeCCCCHHHhCCcEEEEE
Confidence 356799999999999998888888775 8999987543 1 12223221 12322 2233 57999999998
Q ss_pred ecc
Q psy12825 252 TAG 254 (488)
Q Consensus 252 tag 254 (488)
+.+
T Consensus 76 at~ 78 (205)
T TIGR01470 76 ATD 78 (205)
T ss_pred CCC
Confidence 853
No 194
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.74 E-value=0.043 Score=52.90 Aligned_cols=68 Identities=18% Similarity=0.296 Sum_probs=45.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc-CC--ccccCCCcEEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG-SD--IAMSEGSRIVII 251 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t-td--~eal~dADiVIi 251 (488)
.+.+||.|||+|.+|...+..|...+. +|++++.+.. +. ..++.+. ..+... .. .+++.++|+||.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga--~V~VIs~~~~--~~-l~~l~~~------~~i~~~~~~~~~~~l~~adlVia 76 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGA--HIVVISPELT--EN-LVKLVEE------GKIRWKQKEFEPSDIVDAFLVIA 76 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEcCCCC--HH-HHHHHhC------CCEEEEecCCChhhcCCceEEEE
Confidence 456899999999999999999988885 8999976431 11 1222221 112221 12 357999999888
Q ss_pred ec
Q psy12825 252 TA 253 (488)
Q Consensus 252 ta 253 (488)
+.
T Consensus 77 aT 78 (202)
T PRK06718 77 AT 78 (202)
T ss_pred cC
Confidence 75
No 195
>PRK13243 glyoxylate reductase; Reviewed
Probab=95.72 E-value=0.1 Score=54.18 Aligned_cols=114 Identities=14% Similarity=0.189 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHH-HhhhCC----------C-CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHH
Q psy12825 153 TMARDAVSTVDRL-LSQVAP----------S-IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEML 220 (488)
Q Consensus 153 ~la~eivlid~~~-~~e~~~----------~-~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~ 220 (488)
.+++.+...++.. .++... . .....++|+|||.|.||..+|..+..-|. +|..||++.....
T Consensus 114 ~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~---- 187 (333)
T PRK13243 114 ATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGM--RILYYSRTRKPEA---- 187 (333)
T ss_pred HHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHHHHHCCC--EEEEECCCCChhh----
Confidence 5777777666443 222210 0 23467899999999999999998876665 8999998654221
Q ss_pred HHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 221 DLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 221 dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+.... +.. .++ +.+++||+|+++.... ..+..++- .+.+....|.+++||++
T Consensus 188 ~~~~~--------~~~-~~l~ell~~aDiV~l~lP~t-----------~~T~~~i~--~~~~~~mk~ga~lIN~a 240 (333)
T PRK13243 188 EKELG--------AEY-RPLEELLRESDFVSLHVPLT-----------KETYHMIN--EERLKLMKPTAILVNTA 240 (333)
T ss_pred HHHcC--------CEe-cCHHHHHhhCCEEEEeCCCC-----------hHHhhccC--HHHHhcCCCCeEEEECc
Confidence 11110 112 245 4689999999996211 01112221 12344446789899887
No 196
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.68 E-value=0.046 Score=51.82 Aligned_cols=74 Identities=19% Similarity=0.306 Sum_probs=53.4
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE--cCCc----cccCCC
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES--GSDI----AMSEGS 246 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~--ttd~----eal~dA 246 (488)
..+.+++.|+|+ |.+|..++..|+..+. +|.+++++.++++....++.+.. ...+.. ..+. ++++++
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~ 98 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRARF----GEGVGAVETSDDAARAAAIKGA 98 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhhc----CCcEEEeeCCCHHHHHHHHhcC
Confidence 345689999997 9999999999988774 89999999888877666664321 112222 1232 568899
Q ss_pred cEEEEec
Q psy12825 247 RIVIITA 253 (488)
Q Consensus 247 DiVIita 253 (488)
|+||.+.
T Consensus 99 diVi~at 105 (194)
T cd01078 99 DVVFAAG 105 (194)
T ss_pred CEEEECC
Confidence 9888875
No 197
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=95.68 E-value=0.026 Score=56.82 Aligned_cols=71 Identities=15% Similarity=0.253 Sum_probs=47.9
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEE-EEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccCCCcEEEE
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFC-LIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSEGSRIVII 251 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~-L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~dADiVIi 251 (488)
.|+++||+|||+|.+|..++..|.......+|. ++|.++++.+..+..+.. . ...++++ -+.++|+|++
T Consensus 3 ~m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~-------~--~~~~~~eell~~~D~Vvi 73 (271)
T PRK13302 3 SRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRR-------P--PPVVPLDQLATHADIVVE 73 (271)
T ss_pred CCCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCC-------C--cccCCHHHHhcCCCEEEE
Confidence 367799999999999999888887641112554 889998776544332210 1 1234554 3678999999
Q ss_pred ec
Q psy12825 252 TA 253 (488)
Q Consensus 252 ta 253 (488)
++
T Consensus 74 ~t 75 (271)
T PRK13302 74 AA 75 (271)
T ss_pred CC
Confidence 96
No 198
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.68 E-value=0.11 Score=56.14 Aligned_cols=78 Identities=21% Similarity=0.373 Sum_probs=51.0
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChh-HHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNED-RCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e-~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIi 251 (488)
...+.++|+|||+|.+|..+|..|...|. +|+++|.++. ........+.+. ...+....+.+...++|+||+
T Consensus 12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~-----gv~~~~~~~~~~~~~~D~Vv~ 84 (480)
T PRK01438 12 SDWQGLRVVVAGLGVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEAL-----GATVRLGPGPTLPEDTDLVVT 84 (480)
T ss_pred cCcCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHc-----CCEEEECCCccccCCCCEEEE
Confidence 34456799999999999999988888887 8999997543 222222334321 123332222234567999999
Q ss_pred eccccc
Q psy12825 252 TAGVRS 257 (488)
Q Consensus 252 tag~~~ 257 (488)
+.|++.
T Consensus 85 s~Gi~~ 90 (480)
T PRK01438 85 SPGWRP 90 (480)
T ss_pred CCCcCC
Confidence 988753
No 199
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.65 E-value=0.025 Score=60.42 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=56.4
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dADiVIit 252 (488)
..+.+||.|||+|.||..++..|...|. .+|.++.++.++++..+..+.. ..+....+ ++.+.+||+||.+
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~-~~I~V~nRt~~ra~~La~~~~~-------~~~~~~~~l~~~l~~aDiVI~a 249 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAP-KQIMLANRTIEKAQKITSAFRN-------ASAHYLSELPQLIKKADIIIAA 249 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHhcC-------CeEecHHHHHHHhccCCEEEEC
Confidence 3456799999999999999999988775 4899999998877665554421 12222234 3678999999999
Q ss_pred ccccc
Q psy12825 253 AGVRS 257 (488)
Q Consensus 253 ag~~~ 257 (488)
.+.|.
T Consensus 250 T~a~~ 254 (414)
T PRK13940 250 VNVLE 254 (414)
T ss_pred cCCCC
Confidence 76553
No 200
>PRK06823 ornithine cyclodeaminase; Validated
Probab=95.64 E-value=0.045 Score=56.43 Aligned_cols=72 Identities=11% Similarity=0.067 Sum_probs=55.2
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
..+++|||+|..+...+..+..-....+|.+||+++++++..+..+.+. ...+....+. +++++||+|+.+.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~-----~~~v~~~~~~~~av~~ADIV~taT 200 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL-----GFAVNTTLDAAEVAHAANLIVTTT 200 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc-----CCcEEEECCHHHHhcCCCEEEEec
Confidence 4689999999999887777665444589999999999998777666542 2345555665 6799999999874
No 201
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.63 E-value=0.049 Score=55.60 Aligned_cols=69 Identities=14% Similarity=0.163 Sum_probs=48.9
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
.....||.|+|+|.+|..++..|...|. +|..+|+++++.+ .+.++. .+.....+. +.++++|+||.+
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~-~~~~~G--------~~~~~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGA--NVTVGARKSAHLA-RITEMG--------LSPFHLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEECCHHHHH-HHHHcC--------CeeecHHHHHHHhCCCCEEEEC
Confidence 4467899999999999999998887775 8999999876543 222211 111112233 568899999998
Q ss_pred c
Q psy12825 253 A 253 (488)
Q Consensus 253 a 253 (488)
.
T Consensus 218 ~ 218 (296)
T PRK08306 218 I 218 (296)
T ss_pred C
Confidence 5
No 202
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.62 E-value=0.0039 Score=63.90 Aligned_cols=32 Identities=34% Similarity=0.571 Sum_probs=30.6
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
.||+|||+|.||+++|+.+..+++++|++++|
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D 32 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVD 32 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEE
Confidence 38999999999999999999999999999998
No 203
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=95.61 E-value=0.057 Score=54.14 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=52.8
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCccccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~eal~dADiVIita 253 (488)
.+.++|.|+|+|.+|.+++..|+..+. +|.++|+++++++..+.++.... .+. .+.+...+.++|+||.+.
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~--~v~v~~R~~~~~~~la~~~~~~~------~~~~~~~~~~~~~~~DivInat 186 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADC--NVIIANRTVSKAEELAERFQRYG------EIQAFSMDELPLHRVDLIINAT 186 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhcC------ceEEechhhhcccCccEEEECC
Confidence 345689999999999999999998775 89999999888876666654311 111 111223456899999997
Q ss_pred ccc
Q psy12825 254 GVR 256 (488)
Q Consensus 254 g~~ 256 (488)
+..
T Consensus 187 p~g 189 (270)
T TIGR00507 187 SAG 189 (270)
T ss_pred CCC
Confidence 543
No 204
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.58 E-value=0.029 Score=48.20 Aligned_cols=90 Identities=19% Similarity=0.240 Sum_probs=59.3
Q ss_pred EEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-----cccCCCcEEEEe
Q psy12825 180 ITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-----AMSEGSRIVIIT 252 (488)
Q Consensus 180 IaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-----eal~dADiVIit 252 (488)
|.|+|.|.+|..++..|...+. +++++|.+++..+....+. ..+... +|. ..+++||.||++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~--~vvvid~d~~~~~~~~~~~---------~~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI--DVVVIDRDPERVEELREEG---------VEVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHTT---------SEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred eEEEcCCHHHHHHHHHHHhCCC--EEEEEECCcHHHHHHHhcc---------cccccccchhhhHHhhcCccccCEEEEc
Confidence 6899999999999999988664 8999999998765432222 122221 222 358899999998
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+ |-..-..++..+++..|+..++...+
T Consensus 70 ~~---------------~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 70 TD---------------DDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp SS---------------SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred cC---------------CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 52 12233445666677777766665554
No 205
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=95.58 E-value=0.14 Score=54.51 Aligned_cols=75 Identities=16% Similarity=0.297 Sum_probs=58.6
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dADiVIit 252 (488)
..+.+||.|||||-||.-++..|..+++ ..|++..++.++++..+.++. ..+..-.+ .+.+.++|+||.+
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~-~~i~IaNRT~erA~~La~~~~--------~~~~~l~el~~~l~~~DvViss 245 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGV-KKITIANRTLERAEELAKKLG--------AEAVALEELLEALAEADVVISS 245 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHhC--------CeeecHHHHHHhhhhCCEEEEe
Confidence 3567889999999999999999999997 589999999988877766665 12222234 3679999999999
Q ss_pred ccccc
Q psy12825 253 AGVRS 257 (488)
Q Consensus 253 ag~~~ 257 (488)
.+.|.
T Consensus 246 Tsa~~ 250 (414)
T COG0373 246 TSAPH 250 (414)
T ss_pred cCCCc
Confidence 76553
No 206
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.57 E-value=0.088 Score=53.49 Aligned_cols=77 Identities=13% Similarity=0.240 Sum_probs=55.4
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
.+..+|+|+|||.++.++++.|+..+. .+|++++++.++++..+..+.+... ........+.+.+.++|+||.+..
T Consensus 124 ~~~~~vlilGAGGAarAv~~aL~~~g~-~~i~V~NRt~~ra~~La~~~~~~~~---~~~~~~~~~~~~~~~~dliINaTp 199 (283)
T COG0169 124 VTGKRVLILGAGGAARAVAFALAEAGA-KRITVVNRTRERAEELADLFGELGA---AVEAAALADLEGLEEADLLINATP 199 (283)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhhhccc---ccccccccccccccccCEEEECCC
Confidence 356789999999999999999999985 5899999999988877666664321 001111223344447999999864
Q ss_pred c
Q psy12825 255 V 255 (488)
Q Consensus 255 ~ 255 (488)
.
T Consensus 200 ~ 200 (283)
T COG0169 200 V 200 (283)
T ss_pred C
Confidence 3
No 207
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.56 E-value=0.046 Score=50.59 Aligned_cols=66 Identities=9% Similarity=0.220 Sum_probs=44.6
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc--cccCCCcEEEEe
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI--AMSEGSRIVIIT 252 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~--eal~dADiVIit 252 (488)
.+.++|.|||+|.+|...+..|+..+. +|++++.+ ..+.. .++.. ..+ ....| ++++++|+||.+
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga--~V~VIsp~--~~~~l-~~l~~-------i~~-~~~~~~~~dl~~a~lViaa 77 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGA--FVTVVSPE--ICKEM-KELPY-------ITW-KQKTFSNDDIKDAHLIYAA 77 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEcCc--cCHHH-HhccC-------cEE-EecccChhcCCCceEEEEC
Confidence 456899999999999999999988886 88898643 22221 12211 111 11233 579999999987
Q ss_pred c
Q psy12825 253 A 253 (488)
Q Consensus 253 a 253 (488)
.
T Consensus 78 T 78 (157)
T PRK06719 78 T 78 (157)
T ss_pred C
Confidence 4
No 208
>PRK06194 hypothetical protein; Provisional
Probab=95.56 E-value=0.3 Score=48.46 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=39.1
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
++.++|.|+|| |.+|..++..|+.+|. +|+++|.+.+.++....++.
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~ 51 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELR 51 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHH
Confidence 45578999998 9999999999999886 89999998877776666654
No 209
>PRK06199 ornithine cyclodeaminase; Validated
Probab=95.55 E-value=0.044 Score=57.90 Aligned_cols=75 Identities=12% Similarity=0.125 Sum_probs=57.0
Q ss_pred CceEEEEecccchHHHHHHHHHc-CCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQ-GIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~-~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
...++|||+|..+...+..++.- ....+|.+||+++++++..+.++.+.. .....+....+. +++.+||+|+.+.
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~--~~~~~v~~~~s~~eav~~ADIVvtaT 231 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETY--PQITNVEVVDSIEEVVRGSDIVTYCN 231 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc--CCCceEEEeCCHHHHHcCCCEEEEcc
Confidence 46899999999998877776653 336799999999999998888887542 111246666676 6799999998764
No 210
>PLN02928 oxidoreductase family protein
Probab=95.51 E-value=0.12 Score=54.09 Aligned_cols=132 Identities=11% Similarity=0.096 Sum_probs=70.7
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
....++|+|||.|.+|..+|..+..-|. +|+.||++..........+................++ +.++.||+|+++
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~ 233 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLC 233 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEEC
Confidence 4567899999999999999998865555 8999998632211100000000000000000012244 568999999998
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHH
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDS 324 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds 324 (488)
.... ..|-.++- .+.+....|.+++||++--.=+-...+.+. +...++.|. .+|.
T Consensus 234 lPlt-----------~~T~~li~--~~~l~~Mk~ga~lINvaRG~lVde~AL~~A--L~~g~i~gA--aLDV 288 (347)
T PLN02928 234 CTLT-----------KETAGIVN--DEFLSSMKKGALLVNIARGGLLDYDAVLAA--LESGHLGGL--AIDV 288 (347)
T ss_pred CCCC-----------hHhhcccC--HHHHhcCCCCeEEEECCCccccCHHHHHHH--HHcCCeeEE--EEcc
Confidence 6211 11222222 344555567899999974321222233332 233466555 3554
No 211
>KOG2711|consensus
Probab=95.51 E-value=0.17 Score=52.25 Aligned_cols=132 Identities=14% Similarity=0.275 Sum_probs=83.3
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHc--C---CCCeEEEEeCChhHHHH---HHHHHhhc----C-CCC---CCCcEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQ--G---IYSNFCLIDSNEDRCKG---EMLDLQHG----A-PFL---RSPKIES 236 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~--~---l~~el~L~Di~~e~l~g---~~~dL~~~----~-~~~---~~~~v~~ 236 (488)
..+.+.||+|||+|.=|+++|..+... . +..+|..+=..+ +..+ ...|+-.. . +++ ...++.+
T Consensus 17 ~~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee-~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvA 95 (372)
T KOG2711|consen 17 AERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEE-EINGEAEKLTEIINSRHENVKYLPGIKLPENVVA 95 (372)
T ss_pred hhcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEecc-ccCChhHHHHHHhccccccccccCCccCCCCeEe
Confidence 344578999999999999998877654 1 223555553222 1222 22222111 1 111 2456888
Q ss_pred cCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeC--------C-chhHHHHHH
Q psy12825 237 GSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISN--------P-VDVLTYISW 305 (488)
Q Consensus 237 ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TN--------P-vdi~t~~~~ 305 (488)
.+|. ++++|||++|+.. |. ..+..++++|..+ .|++..|-.+. | ..++++++.
T Consensus 96 v~dl~ea~~dADilvf~v-----Ph-----------Qf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~ 159 (372)
T KOG2711|consen 96 VPDLVEAAKDADILVFVV-----PH-----------QFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIH 159 (372)
T ss_pred cchHHHHhccCCEEEEeC-----Ch-----------hhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHH
Confidence 8897 7899999999985 21 3567788888887 56665555432 2 457888998
Q ss_pred HhcCCCCCcEEeecCChH
Q psy12825 306 KLSGFPKNRVIGSGTNLD 323 (488)
Q Consensus 306 k~sg~p~~rViG~gt~ld 323 (488)
+..|+|-. +. +|.++.
T Consensus 160 ~~lgI~~~-vL-~GaNiA 175 (372)
T KOG2711|consen 160 RALGIPCS-VL-MGANIA 175 (372)
T ss_pred HHhCCCce-ee-cCCchH
Confidence 88888865 33 556654
No 212
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=95.50 E-value=0.16 Score=52.43 Aligned_cols=94 Identities=13% Similarity=0.060 Sum_probs=55.3
Q ss_pred chHHHHHHHHHcCCCCeEEEEeCChhHHH-HHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHh
Q psy12825 188 VGMACTYSILTQGIYSNFCLIDSNEDRCK-GEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQ 265 (488)
Q Consensus 188 vG~~ia~~La~~~l~~el~L~Di~~e~l~-g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~d 265 (488)
-|.++|..|+..|+ +|++||++.++++ .....+.+.- ...+.+. ++.++||+||++..
T Consensus 31 gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaG-------A~~AaS~aEAAa~ADVVIL~LP----------- 90 (341)
T TIGR01724 31 GGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAG-------VKVVSDDKEAAKHGEIHVLFTP----------- 90 (341)
T ss_pred CHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCC-------CeecCCHHHHHhCCCEEEEecC-----------
Confidence 36778888888887 8999999877553 2334444321 1223344 78899999999952
Q ss_pred hHhhhHHHHHHHHHHHhccC-CCcEEEEEe-CCchhHHHHHH
Q psy12825 266 LVDRNVKIFKDLIPKIAKGS-PDCILLIIS-NPVDVLTYISW 305 (488)
Q Consensus 266 ll~~N~~ii~ei~~~I~~~~-p~a~vIv~T-NPvdi~t~~~~ 305 (488)
|....++++..+.... +..++|..| -+.+..-+.+.
T Consensus 91 ----d~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e 128 (341)
T TIGR01724 91 ----FGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLE 128 (341)
T ss_pred ----CHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHH
Confidence 3334444444444443 445444443 33334444443
No 213
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.49 E-value=0.058 Score=51.88 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=49.4
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcccc-CCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMS-EGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal-~dADiVIi 251 (488)
..++.++|+|+|.|.||+.++..|...|. +|+.+|+++++++....++. .... +..+.+ .+||+++.
T Consensus 24 ~~l~gk~v~I~G~G~vG~~~A~~L~~~G~--~Vvv~D~~~~~~~~~~~~~g--------~~~v--~~~~l~~~~~Dv~vp 91 (200)
T cd01075 24 DSLEGKTVAVQGLGKVGYKLAEHLLEEGA--KLIVADINEEAVARAAELFG--------ATVV--APEEIYSVDADVFAP 91 (200)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHcC--------CEEE--cchhhccccCCEEEe
Confidence 45677899999999999999999998887 89999999877665443321 1111 111222 38999997
Q ss_pred ec
Q psy12825 252 TA 253 (488)
Q Consensus 252 ta 253 (488)
++
T Consensus 92 ~A 93 (200)
T cd01075 92 CA 93 (200)
T ss_pred cc
Confidence 75
No 214
>PTZ00325 malate dehydrogenase; Provisional
Probab=95.44 E-value=0.0047 Score=63.76 Aligned_cols=43 Identities=16% Similarity=0.107 Sum_probs=35.8
Q ss_pred CCCcEEEEec-chhHHHHHHHHHhhhhHHHHHHHHH-HHHhhhCC
Q psy12825 129 PDQKITVVGA-GQVGMACTYSILTQTMARDAVSTVD-RLLSQVAP 171 (488)
Q Consensus 129 ~~~ki~vvg~-g~vg~~~a~~~~~k~la~eivlid~-~~~~e~~~ 171 (488)
+..||+|||+ |.||.++||++..+++++|++++|. ++.++.+|
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~D 51 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAAD 51 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccc
Confidence 4469999999 9999999999999999999999995 33444444
No 215
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.42 E-value=0.18 Score=49.04 Aligned_cols=113 Identities=14% Similarity=0.206 Sum_probs=69.3
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e-------- 241 (488)
++.++|.|+|+ |.+|..++..|+..|. +|++++.+++..+....++.+.. .++. ...|. +
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~ 77 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG-----GKAIGVAMDVTNEDAVNAGIDK 77 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC-----ceEEEEECCCCCHHHHHHHHHH
Confidence 45678999999 9999999999999887 89999999877776666665421 1221 12232 1
Q ss_pred ---ccCCCcEEEEecccccCC---C---cchHhhHhhhHHH----HHHHHHHHhccCCCcEEEEEe
Q psy12825 242 ---MSEGSRIVIITAGVRSLV---G---ETRLQLVDRNVKI----FKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 242 ---al~dADiVIitag~~~k~---G---~~r~dll~~N~~i----i~ei~~~I~~~~p~a~vIv~T 294 (488)
.+.+.|+||-+++..... . ....+.+..|+.- .+.+.+.+.+.++...+++++
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~s 143 (262)
T PRK13394 78 VAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMG 143 (262)
T ss_pred HHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEc
Confidence 123489999998764211 1 1122334455543 555666663333344455554
No 216
>PLN02650 dihydroflavonol-4-reductase
Probab=95.41 E-value=0.17 Score=52.09 Aligned_cols=116 Identities=14% Similarity=0.096 Sum_probs=69.4
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCcE
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSRI 248 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dADi 248 (488)
+.++|.|+|| |.+|++++..|+..|. +|++++++.+.+.... ++...........+... +|. +.++++|+
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ 80 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVK-HLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTG 80 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHH-HHHhccCCCCceEEEEecCCChhhHHHHHhCCCE
Confidence 4568999998 9999999999999887 8888888765444322 22111000001111111 122 35778999
Q ss_pred EEEecccccCCCcc-hHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 249 VIITAGVRSLVGET-RLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 249 VIitag~~~k~G~~-r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
||-+++........ ..+.+..|+.-...+.+.+.+...-..+|++|
T Consensus 81 ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~S 127 (351)
T PLN02650 81 VFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTS 127 (351)
T ss_pred EEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEec
Confidence 99998643211112 23456778888888888877754223455544
No 217
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=95.41 E-value=0.068 Score=53.88 Aligned_cols=76 Identities=14% Similarity=0.203 Sum_probs=55.6
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dADiVIita 253 (488)
.+.+++.|+|+|.+|.+++..|...+. .+|.+++++.++++..+.++.... .+....+ .+.+.++|+||.+.
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~-~~V~v~~R~~~~a~~l~~~~~~~~------~~~~~~~~~~~~~~~DivInaT 193 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGV-AEITIVNRTVERAEELAKLFGALG------KAELDLELQEELADFDLIINAT 193 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhhhcc------ceeecccchhccccCCEEEECC
Confidence 456789999999999999999997774 489999999988877666654321 1222113 25688999999996
Q ss_pred cccc
Q psy12825 254 GVRS 257 (488)
Q Consensus 254 g~~~ 257 (488)
..+.
T Consensus 194 p~g~ 197 (278)
T PRK00258 194 SAGM 197 (278)
T ss_pred cCCC
Confidence 5443
No 218
>PRK07589 ornithine cyclodeaminase; Validated
Probab=95.40 E-value=0.052 Score=56.69 Aligned_cols=72 Identities=13% Similarity=0.134 Sum_probs=55.1
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
..+++|||+|..+...+..++.--...+|.+||+++++.+..+.++.+. ..++....+. +++++||+|+.+.
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~-----~~~v~~~~~~~~av~~ADIIvtaT 201 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP-----GLRIVACRSVAEAVEGADIITTVT 201 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCHHHHHhcCCEEEEec
Confidence 4689999999998876665554334579999999999998888887652 2356556676 6799999999875
No 219
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=95.39 E-value=0.046 Score=54.85 Aligned_cols=89 Identities=12% Similarity=0.120 Sum_probs=59.7
Q ss_pred ceEEEEecccchHHHHHHHHHcCC--CCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcccc--CCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGI--YSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMS--EGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l--~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal--~dADiVIita 253 (488)
+||+|||+|.+|..++..+..... ..-+.++|.++++.+... .. ....+|+++| .+.|+||+++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~----~~--------~~~~~~l~~ll~~~~DlVVE~A 70 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA----GR--------VALLDGLPGLLAWRPDLVVEAA 70 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh----cc--------CcccCCHHHHhhcCCCEEEECC
Confidence 699999999999999888766532 222445777765554422 11 1134566664 7899999998
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+ ...+++++..+=+...|-+++-++
T Consensus 71 ~----------------~~av~e~~~~iL~~g~dlvv~SvG 95 (267)
T PRK13301 71 G----------------QQAIAEHAEGCLTAGLDMIICSAG 95 (267)
T ss_pred C----------------HHHHHHHHHHHHhcCCCEEEEChh
Confidence 5 357888998887776665444333
No 220
>PLN02712 arogenate dehydrogenase
Probab=95.38 E-value=0.15 Score=57.73 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=45.6
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cC-CCcEEEEe
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SE-GSRIVIIT 252 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~-dADiVIit 252 (488)
.+.+||+|||+|.||..++..|...|. +|+.+|.+... + .+.++ . +...++.++ +. ++|+||++
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~~~G~--~V~~~dr~~~~-~-~a~~~------G----v~~~~~~~el~~~~aDvVILa 432 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMVKQGH--TVLAYSRSDYS-D-EAQKL------G----VSYFSDADDLCEEHPEVILLC 432 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHHHCcC--EEEEEECChHH-H-HHHHc------C----CeEeCCHHHHHhcCCCEEEEC
Confidence 357899999999999999999987775 89999997532 1 11111 0 123345543 44 59999999
Q ss_pred c
Q psy12825 253 A 253 (488)
Q Consensus 253 a 253 (488)
.
T Consensus 433 v 433 (667)
T PLN02712 433 T 433 (667)
T ss_pred C
Confidence 6
No 221
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.34 E-value=0.054 Score=52.98 Aligned_cols=34 Identities=26% Similarity=0.553 Sum_probs=30.1
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeC
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDS 210 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di 210 (488)
+..||.|+|+|.+|+.++..|+..|+ .+++|+|.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gv-g~i~lvD~ 53 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGV-GKLGLVDD 53 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcC
Confidence 45699999999999999999999986 58999975
No 222
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.31 E-value=0.041 Score=57.24 Aligned_cols=77 Identities=17% Similarity=0.303 Sum_probs=52.1
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh---------------------hHHHHHHHHHhhcCCCCCC
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE---------------------DRCKGEMLDLQHGAPFLRS 231 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~---------------------e~l~g~~~dL~~~~~~~~~ 231 (488)
...+..||.|||+|.+|+.++..|+..|+ .+|.|+|.|. .+++..+..+.+.. ..
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGv-g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in---p~ 95 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGI-GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN---SE 95 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC---CC
Confidence 34456799999999999999999999986 5899999863 13333344444432 23
Q ss_pred CcEEEc-CC-----c-cccCCCcEEEEec
Q psy12825 232 PKIESG-SD-----I-AMSEGSRIVIITA 253 (488)
Q Consensus 232 ~~v~~t-td-----~-eal~dADiVIita 253 (488)
.++... .+ . +.++++|+||.+.
T Consensus 96 v~i~~~~~~~~~~~~~~~~~~~DlVid~~ 124 (338)
T PRK12475 96 VEIVPVVTDVTVEELEELVKEVDLIIDAT 124 (338)
T ss_pred cEEEEEeccCCHHHHHHHhcCCCEEEEcC
Confidence 333321 11 2 3578999999985
No 223
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=95.30 E-value=0.13 Score=56.69 Aligned_cols=128 Identities=23% Similarity=0.385 Sum_probs=84.2
Q ss_pred CCCCCceEEEEecccchHHHHHHHHH-----cCC-----CCeEEEEeCCh----hH---HHHHHHHHhhcCCCCCCCcEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILT-----QGI-----YSNFCLIDSNE----DR---CKGEMLDLQHGAPFLRSPKIE 235 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~-----~~l-----~~el~L~Di~~----e~---l~g~~~dL~~~~~~~~~~~v~ 235 (488)
...+..||++.|||+.|.+++..|.. .|+ ...++++|.+- ++ +......+.+.. .
T Consensus 317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~------~-- 388 (581)
T PLN03129 317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDH------E-- 388 (581)
T ss_pred CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhc------c--
Confidence 33455799999999999999988776 354 25899999731 11 322333333211 1
Q ss_pred EcCCc-cccCC--CcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCc---hhHHHHHHHhcC
Q psy12825 236 SGSDI-AMSEG--SRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV---DVLTYISWKLSG 309 (488)
Q Consensus 236 ~ttd~-eal~d--ADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPv---di~t~~~~k~sg 309 (488)
...++ +++++ +|++|=+.+.+ |. +-.++.+.|.++|+..+|+-.+||. .+..+-+++++.
T Consensus 389 ~~~~L~e~v~~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~ 454 (581)
T PLN03129 389 PGASLLEAVKAIKPTVLIGLSGVG---GT-----------FTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTG 454 (581)
T ss_pred cCCCHHHHHhccCCCEEEEecCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhc
Confidence 12455 67888 89888765432 21 2367788888999999999999996 566777777652
Q ss_pred CCCCcEEeecCChHH
Q psy12825 310 FPKNRVIGSGTNLDS 324 (488)
Q Consensus 310 ~p~~rViG~gt~lds 324 (488)
-+-+|++|+-.+.
T Consensus 455 --G~ai~AtGSPf~p 467 (581)
T PLN03129 455 --GRAIFASGSPFDP 467 (581)
T ss_pred --CCEEEEeCCCCCC
Confidence 1358888765543
No 224
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.27 E-value=0.045 Score=55.54 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=53.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-cccCCCcEEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-AMSEGSRIVII 251 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-eal~dADiVIi 251 (488)
.+.+++.|+|||.++.++++.|+..+. .+|.++|++.++++..+.++.... . ...+... .+. +.+.++|+||.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~-~~i~i~nR~~~ka~~La~~~~~~~--~-~~~~~~~~~~~~~~~~~~~divIN 200 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVINNAV--G-REAVVGVDARGIEDVIAAADGVVN 200 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHhhcc--C-cceEEecCHhHHHHHHhhcCEEEE
Confidence 345789999999999999999998775 589999999998888776664321 1 1111111 112 24668999999
Q ss_pred ecc
Q psy12825 252 TAG 254 (488)
Q Consensus 252 tag 254 (488)
+..
T Consensus 201 aTp 203 (283)
T PRK14027 201 ATP 203 (283)
T ss_pred cCC
Confidence 863
No 225
>PLN02427 UDP-apiose/xylose synthase
Probab=95.23 E-value=0.15 Score=53.42 Aligned_cols=116 Identities=14% Similarity=0.134 Sum_probs=67.7
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcC-CCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccC
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQG-IYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSE 244 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~-l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~ 244 (488)
+..++|||.|+|+ |.+|++++..|+.++ . +|+.+|.+.+...... .... .......++... +|. ++++
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~~~~l~-~~~~-~~~~~~~~~~~~Dl~d~~~l~~~~~ 85 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDKIKHLL-EPDT-VPWSGRIQFHRINIKHDSRLEGLIK 85 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchhhhhhh-cccc-ccCCCCeEEEEcCCCChHHHHHHhh
Confidence 5667889999998 999999999999874 5 8999998665433211 1100 000111122211 122 3577
Q ss_pred CCcEEEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 245 GSRIVIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 245 dADiVIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
++|+||-+++..... .....+.+..|+.-...+.+..++.. ..+|++|
T Consensus 86 ~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~S 135 (386)
T PLN02427 86 MADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFS 135 (386)
T ss_pred cCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEe
Confidence 899999998753211 11223445566665556666665544 3455555
No 226
>PRK06046 alanine dehydrogenase; Validated
Probab=95.22 E-value=0.058 Score=55.76 Aligned_cols=72 Identities=11% Similarity=0.160 Sum_probs=54.3
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~dADiVIita 253 (488)
..+|+|||+|.+|...+..+....-..++.++|+++++++..+.++.+.. ..++....|++ .+. +|+|+++.
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~l~-aDiVv~aT 201 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVV----GCDVTVAEDIEEACD-CDILVTTT 201 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhc----CceEEEeCCHHHHhh-CCEEEEec
Confidence 46899999999999888877754446799999999998888777776431 23455556764 465 99999985
No 227
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=95.18 E-value=0.2 Score=51.71 Aligned_cols=118 Identities=11% Similarity=0.113 Sum_probs=70.1
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc-------cccC
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI-------AMSE 244 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~-------eal~ 244 (488)
.++++||.|+|| |.+|++++..|+.++. +|+.+|+..........++..........++. ...|. +.++
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~ 89 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACK 89 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhh
Confidence 346789999998 9999999999999886 89999985432111111111100000001221 12342 2378
Q ss_pred CCcEEEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 245 GSRIVIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 245 dADiVIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
++|+||-++.....+ .....+....|+.-...+.+.+++....- +|.++
T Consensus 90 ~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~-~v~~S 140 (348)
T PRK15181 90 NVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSS-FTYAA 140 (348)
T ss_pred CCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCe-EEEee
Confidence 899999998653321 12334556778888888888877764333 44443
No 228
>PLN02206 UDP-glucuronate decarboxylase
Probab=95.18 E-value=0.16 Score=54.63 Aligned_cols=110 Identities=15% Similarity=0.116 Sum_probs=68.9
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc--cccCCCcEEEEe
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI--AMSEGSRIVIIT 252 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~--eal~dADiVIit 252 (488)
+.+||.|+|+ |.+|++++..|+.++. +|+.+|......... +.+... ....++. ..|. ..+.++|+||-+
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~~~~~~---~~~~~~-~~~~~~i-~~D~~~~~l~~~D~ViHl 190 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFTGRKEN---VMHHFS-NPNFELI-RHDVVEPILLEVDQIYHL 190 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCccchhh---hhhhcc-CCceEEE-ECCccChhhcCCCEEEEe
Confidence 4589999998 9999999999999886 888888643211111 111100 0111222 2342 356789999999
Q ss_pred cccccC--CCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 253 AGVRSL--VGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 253 ag~~~k--~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
++.... ......+.+..|+.....+.+..++.. ..+|+++
T Consensus 191 Aa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g--~r~V~~S 232 (442)
T PLN02206 191 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTS 232 (442)
T ss_pred eeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEEC
Confidence 864321 112345667788888888888877764 2455554
No 229
>PRK07069 short chain dehydrogenase; Validated
Probab=95.10 E-value=0.79 Score=44.17 Aligned_cols=112 Identities=21% Similarity=0.261 Sum_probs=67.0
Q ss_pred eEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCC-hhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc-----------c
Q psy12825 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDSN-EDRCKGEMLDLQHGAPFLRSPKIESGSD---IA-----------M 242 (488)
Q Consensus 179 KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~-~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e-----------a 242 (488)
||.|+|+ |.+|..++..|+..|. +|++.+.+ .+.++....++..... .........| .+ .
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHG--EGVAFAAVQDVTDEAQWQALLAQAADA 76 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCC--CceEEEEEeecCCHHHHHHHHHHHHHH
Confidence 5889998 9999999999998886 89999987 6666655555543210 0001111112 11 2
Q ss_pred cCCCcEEEEecccccCC---Ccc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 243 SEGSRIVIITAGVRSLV---GET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 243 l~dADiVIitag~~~k~---G~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+...|+||..++..... ..+ -...+..|+. ..+.+.+.+.+... ..+|+++.
T Consensus 77 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~ii~~ss 138 (251)
T PRK07069 77 MGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQP-ASIVNISS 138 (251)
T ss_pred cCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-cEEEEecC
Confidence 35689999998754321 111 1233455655 55667777765543 44666554
No 230
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.10 E-value=0.25 Score=47.57 Aligned_cols=46 Identities=17% Similarity=0.290 Sum_probs=38.5
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
+.++|.|+|| |.+|..++..|+..|. +|++++++++.++....++.
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~ 50 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNEEAAERVAAEIL 50 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHh
Confidence 4578999999 9999999999998886 79999999877766555554
No 231
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.09 E-value=0.11 Score=55.55 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=61.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
....+|+|+|+|.+|..++..+...|. +|+.+|+++.++.. +..+. + .+. ...++++++|+||.+.|
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~-A~~~G----~----~~~--~~~e~v~~aDVVI~atG 266 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA--RVIVTEVDPICALQ-AAMEG----Y----EVM--TMEEAVKEGDIFVTTTG 266 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEECChhhHHH-HHhcC----C----EEc--cHHHHHcCCCEEEECCC
Confidence 467899999999999999888877776 78999999887653 22211 0 111 11256789999999864
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
. ..++.. ..++...+.+++++++.+
T Consensus 267 ~---------------~~~i~~--~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 267 N---------------KDIITG--EHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred C---------------HHHHHH--HHHhcCCCCcEEEEeCCC
Confidence 2 122221 124445678889899865
No 232
>PRK06436 glycerate dehydrogenase; Provisional
Probab=95.09 E-value=0.23 Score=50.98 Aligned_cols=136 Identities=10% Similarity=0.126 Sum_probs=75.7
Q ss_pred cEEEEecchhHHHHH-HHHHh-hhhHHHHHHHHHHH-HhhhCC--CCCCCCceEEEEecccchHHHHHHHHHcCCCCeEE
Q psy12825 132 KITVVGAGQVGMACT-YSILT-QTMARDAVSTVDRL-LSQVAP--SIESPDQKITVVGAGQVGMACTYSILTQGIYSNFC 206 (488)
Q Consensus 132 ki~vvg~g~vg~~~a-~~~~~-k~la~eivlid~~~-~~e~~~--~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~ 206 (488)
.|.+-..|.-+-+.| |++.+ -.+++.+...+... .++... ......++|+|||.|.||..++..+..-|. +|+
T Consensus 72 ~i~~~~~g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~afG~--~V~ 149 (303)
T PRK06436 72 VVLCSNAGAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGM--NIY 149 (303)
T ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCC--EEE
Confidence 333333454444555 43322 34566665544332 222211 135567899999999999999986644455 899
Q ss_pred EEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC
Q psy12825 207 LIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS 285 (488)
Q Consensus 207 L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~ 285 (488)
.+|++... +.. ... ..++ +.++.||+|++..... . ++-.++- .+.++...
T Consensus 150 ~~~r~~~~---------~~~------~~~-~~~l~ell~~aDiv~~~lp~t----~-------~T~~li~--~~~l~~mk 200 (303)
T PRK06436 150 AYTRSYVN---------DGI------SSI-YMEPEDIMKKSDFVLISLPLT----D-------ETRGMIN--SKMLSLFR 200 (303)
T ss_pred EECCCCcc---------cCc------ccc-cCCHHHHHhhCCEEEECCCCC----c-------hhhcCcC--HHHHhcCC
Confidence 99986321 000 001 2345 4588999999985211 0 1111221 33445556
Q ss_pred CCcEEEEEe--CCch
Q psy12825 286 PDCILLIIS--NPVD 298 (488)
Q Consensus 286 p~a~vIv~T--NPvd 298 (488)
|.+++||++ .++|
T Consensus 201 ~ga~lIN~sRG~~vd 215 (303)
T PRK06436 201 KGLAIINVARADVVD 215 (303)
T ss_pred CCeEEEECCCccccC
Confidence 789999987 4454
No 233
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=95.09 E-value=0.26 Score=49.67 Aligned_cols=105 Identities=17% Similarity=0.104 Sum_probs=64.1
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CC---c-cccCCCcEE
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SD---I-AMSEGSRIV 249 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td---~-eal~dADiV 249 (488)
.++|.|+|| |.+|+.++..|+.+|. +|+.++++.+.... ...+...........+... .| . +.++++|+|
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 80 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKK-TEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGV 80 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhh-HHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEE
Confidence 478999998 9999999999999887 88888876543321 1122111000011111111 12 2 347899999
Q ss_pred EEecccccCC-CcchHhhHhhhHHHHHHHHHHHhcc
Q psy12825 250 IITAGVRSLV-GETRLQLVDRNVKIFKDLIPKIAKG 284 (488)
Q Consensus 250 Iitag~~~k~-G~~r~dll~~N~~ii~ei~~~I~~~ 284 (488)
|.+++..... .....+.+..|+.-...+.+.+.+.
T Consensus 81 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~ 116 (322)
T PLN02662 81 FHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKV 116 (322)
T ss_pred EEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhC
Confidence 9998643211 1122356677888888888877665
No 234
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=95.06 E-value=0.063 Score=55.64 Aligned_cols=100 Identities=12% Similarity=0.222 Sum_probs=70.9
Q ss_pred cEEEEecchhH---HHHHHHHHhhhhHHHHHHHHHHHHhhhCCCCCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEE
Q psy12825 132 KITVVGAGQVG---MACTYSILTQTMARDAVSTVDRLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLI 208 (488)
Q Consensus 132 ki~vvg~g~vg---~~~a~~~~~k~la~eivlid~~~~~e~~~~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~ 208 (488)
.++++-++.+. .|++-++-.|-|+++ ....++|||+|..+...+..+..--...+|.+|
T Consensus 100 plal~d~~~lTa~RTaAasavAa~~LA~~------------------da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~ 161 (330)
T COG2423 100 PLALLDATRLTALRTAAASAVAAKYLARK------------------DASTLAIIGAGAQARTQLEALKAVRDIREIRVY 161 (330)
T ss_pred EEEEecCccHHHHHHHHHHHHHHHHhccC------------------CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEE
Confidence 57788888765 333344444444432 224689999999988776666554345799999
Q ss_pred eCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 209 DSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 209 Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
|++++..+..+.++.+.. ...+....+. +++++||+|+.+.
T Consensus 162 ~r~~~~~e~~a~~l~~~~----~~~v~a~~s~~~av~~aDiIvt~T 203 (330)
T COG2423 162 SRDPEAAEAFAARLRKRG----GEAVGAADSAEEAVEGADIVVTAT 203 (330)
T ss_pred cCCHHHHHHHHHHHHhhc----CccceeccCHHHHhhcCCEEEEec
Confidence 999999999888887653 1246666665 6899999999884
No 235
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.05 E-value=0.11 Score=52.82 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=51.0
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh---hHHHHHHHHHhhcCCCCCCCcEEEcC--C---c-cccCC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE---DRCKGEMLDLQHGAPFLRSPKIESGS--D---I-AMSEG 245 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~---e~l~g~~~dL~~~~~~~~~~~v~~tt--d---~-eal~d 245 (488)
.+.+++.|+|||.++.++++.++..+. .+|.++++++ ++++..+.++.+.. ...+.... + . +++.+
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~-~~i~i~nRt~~~~~ka~~la~~~~~~~----~~~~~~~~~~~~~~l~~~~~~ 196 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRVNENT----DCVVTVTDLADQQAFAEALAS 196 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCccHHHHHHHHHHHhhhcc----CceEEEechhhhhhhhhhccc
Confidence 455789999999999999998988775 5899999984 46666655554321 11122111 1 1 25678
Q ss_pred CcEEEEecc
Q psy12825 246 SRIVIITAG 254 (488)
Q Consensus 246 ADiVIitag 254 (488)
+|+||.+..
T Consensus 197 aDivINaTp 205 (288)
T PRK12749 197 ADILTNGTK 205 (288)
T ss_pred CCEEEECCC
Confidence 999999853
No 236
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.05 E-value=0.15 Score=45.90 Aligned_cols=32 Identities=25% Similarity=0.555 Sum_probs=28.9
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCC
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSN 211 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~ 211 (488)
||.|+|+|.+|+.++..|+..|. .++.|+|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-GKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCC
Confidence 68999999999999999999997 589999864
No 237
>PLN00198 anthocyanidin reductase; Provisional
Probab=95.02 E-value=0.27 Score=50.28 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=69.2
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCC
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGS 246 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dA 246 (488)
.+++++|.|+|| |.+|++++..|+..|. +|++++++.+..... .++...... ....+... +|. +.++++
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~-~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~ 81 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKI-AHLRALQEL-GDLKIFGADLTDEESFEAPIAGC 81 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHH-HHHHhcCCC-CceEEEEcCCCChHHHHHHHhcC
Confidence 355789999998 9999999999999886 787777665433211 112111100 01122211 122 347889
Q ss_pred cEEEEecccccCC-CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 247 RIVIITAGVRSLV-GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 247 DiVIitag~~~k~-G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
|+||-+++..... .....+++..|+.-...+.+.+.+...-..+|++|
T Consensus 82 d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~S 130 (338)
T PLN00198 82 DLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTS 130 (338)
T ss_pred CEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEee
Confidence 9999998643211 11223456778888888888877763222344443
No 238
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.02 E-value=0.12 Score=58.24 Aligned_cols=136 Identities=16% Similarity=0.268 Sum_probs=83.4
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-----cccCCCcEE
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-----AMSEGSRIV 249 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-----eal~dADiV 249 (488)
..+|.|+|.|.+|+.++..|...+. +++++|.|+++.+... +. ..++.+. +|+ +.+++||.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~--~vvvID~d~~~v~~~~-~~--------g~~v~~GDat~~~~L~~agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV--KMTVLDHDPDHIETLR-KF--------GMKVFYGDATRMDLLESAGAAKAEVL 468 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC--CEEEEECCHHHHHHHH-hc--------CCeEEEEeCCCHHHHHhcCCCcCCEE
Confidence 4689999999999999999988887 8999999998776432 11 1123221 232 358899999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHH
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRV 329 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~ 329 (488)
|++.. |-+.-..++..+++..|+..++.-++-..- .+.+.+ .|. +.++-- +...+.++.+
T Consensus 469 vv~~~---------------d~~~n~~i~~~ar~~~p~~~iiaRa~d~~~-~~~L~~-~Ga--d~v~~e-~~e~sl~l~~ 528 (621)
T PRK03562 469 INAID---------------DPQTSLQLVELVKEHFPHLQIIARARDVDH-YIRLRQ-AGV--EKPERE-TFEGALKSGR 528 (621)
T ss_pred EEEeC---------------CHHHHHHHHHHHHHhCCCCeEEEEECCHHH-HHHHHH-CCC--CEEehh-hHhHHHHHHH
Confidence 99852 112223345556666788766554543322 222322 343 344322 3334455666
Q ss_pred HHHHHhCCCCCCce
Q psy12825 330 LLAQKLGLSPESVH 343 (488)
Q Consensus 330 ~lA~~Lgv~p~~V~ 343 (488)
.+-+.+|+++++++
T Consensus 529 ~~L~~lg~~~~~~~ 542 (621)
T PRK03562 529 LVLESLGLGPYEAR 542 (621)
T ss_pred HHHHHcCCCHHHHH
Confidence 66677787775543
No 239
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.01 E-value=0.11 Score=54.10 Aligned_cols=36 Identities=19% Similarity=0.532 Sum_probs=31.9
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN 211 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~ 211 (488)
.+..||.|||+|.+|+.++..|+..|+ .+|.|+|.|
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D 57 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGV-GKVTIVDRD 57 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 445799999999999999999999986 589999986
No 240
>PRK13529 malate dehydrogenase; Provisional
Probab=94.99 E-value=0.24 Score=54.62 Aligned_cols=173 Identities=14% Similarity=0.209 Sum_probs=101.5
Q ss_pred EEecchhHHHHHHHHHhhhhHHHHHHHHHHHHh----------hhC--CCCCCCCceEEEEecccchHHHHHHHHH----
Q psy12825 135 VVGAGQVGMACTYSILTQTMARDAVSTVDRLLS----------QVA--PSIESPDQKITVVGAGQVGMACTYSILT---- 198 (488)
Q Consensus 135 vvg~g~vg~~~a~~~~~k~la~eivlid~~~~~----------e~~--~~~~~~~~KIaIIGAG~vG~~ia~~La~---- 198 (488)
+|=--..|..-||-+|-| .-+++...++...+ ..+ .....+..||++.|||+.|.++|..|+.
T Consensus 242 ~I~~EDf~~~~af~iL~r-yr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~ 320 (563)
T PRK13529 242 LLQFEDFAQKNARRILER-YRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVR 320 (563)
T ss_pred EEehhhcCCchHHHHHHH-hccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 556666666667777665 33333333321100 000 0034455799999999999999998876
Q ss_pred cCCC-----CeEEEEeCCh----h--HHHHHHHHHhhcCCCCCCCcE-EEcCCc-cccCCC--cEEEEecccccCCCcch
Q psy12825 199 QGIY-----SNFCLIDSNE----D--RCKGEMLDLQHGAPFLRSPKI-ESGSDI-AMSEGS--RIVIITAGVRSLVGETR 263 (488)
Q Consensus 199 ~~l~-----~el~L~Di~~----e--~l~g~~~dL~~~~~~~~~~~v-~~ttd~-eal~dA--DiVIitag~~~k~G~~r 263 (488)
.|+. ..++++|.+- + .+......+.+...-...... ....++ ++++++ |++|=+.+.+ |.
T Consensus 321 ~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~---g~-- 395 (563)
T PRK13529 321 EGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQP---GA-- 395 (563)
T ss_pred cCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCC---CC--
Confidence 4652 5899999731 1 132233333322100000000 012354 678888 9887665432 21
Q ss_pred HhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch---hHHHHHHHhcCCCCCcEEeecCChHH
Q psy12825 264 LQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD---VLTYISWKLSGFPKNRVIGSGTNLDS 324 (488)
Q Consensus 264 ~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd---i~t~~~~k~sg~p~~rViG~gt~lds 324 (488)
+-+++.+.|.++|+..+|+-.|||.. +..+-+++++. -+.+|++|+-.+.
T Consensus 396 ---------Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~--Grai~AtGspf~p 448 (563)
T PRK13529 396 ---------FTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTD--GRALVATGSPFAP 448 (563)
T ss_pred ---------CCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhc--CCEEEEECCCCCC
Confidence 23678888999999999999999975 56666777652 2468888876553
No 241
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.95 E-value=0.12 Score=57.95 Aligned_cols=135 Identities=13% Similarity=0.213 Sum_probs=82.6
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-----cccCCCcEE
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-----AMSEGSRIV 249 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-----eal~dADiV 249 (488)
..+|.|+|.|.+|+.++..|...+. +++++|.|+++.+.. .+. ..++... ++. ..+.+||.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~--~vvvID~d~~~v~~~-~~~--------g~~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM--RITVLERDISAVNLM-RKY--------GYKVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC--CEEEEECCHHHHHHH-HhC--------CCeEEEeeCCCHHHHHhcCCccCCEE
Confidence 4689999999999999999988887 899999999877642 221 1122221 232 358899999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe-CCchhHHHHHHHhcCCCCCcEEeecCChHHHHHH
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS-NPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFR 328 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T-NPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~ 328 (488)
|++.+ |-+.-..++..+++++|+..++.-+ |+.+ .+.+++ .|. +.|+=- |..-+..+-
T Consensus 469 v~~~~---------------d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~--~~~L~~-~Ga--~~vv~e-~~es~l~l~ 527 (601)
T PRK03659 469 VITCN---------------EPEDTMKIVELCQQHFPHLHILARARGRVE--AHELLQ-AGV--TQFSRE-TFSSALELG 527 (601)
T ss_pred EEEeC---------------CHHHHHHHHHHHHHHCCCCeEEEEeCCHHH--HHHHHh-CCC--CEEEcc-HHHHHHHHH
Confidence 99852 1122234566677788887665544 5543 223333 343 234311 222233444
Q ss_pred HHHHHHhCCCCCCce
Q psy12825 329 VLLAQKLGLSPESVH 343 (488)
Q Consensus 329 ~~lA~~Lgv~p~~V~ 343 (488)
...=..+|++++++.
T Consensus 528 ~~~L~~lg~~~~~~~ 542 (601)
T PRK03659 528 RKTLVSLGMHPHQAQ 542 (601)
T ss_pred HHHHHHcCCCHHHHH
Confidence 555567788876664
No 242
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=94.93 E-value=0.0071 Score=61.84 Aligned_cols=32 Identities=34% Similarity=0.635 Sum_probs=30.5
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
+||+|||+|.||.++||+++.+++++|++++|
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D 32 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLID 32 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence 38999999999999999999999999999988
No 243
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.91 E-value=0.075 Score=56.74 Aligned_cols=66 Identities=27% Similarity=0.410 Sum_probs=47.0
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CC---c-c-ccCCCcEEE
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SD---I-A-MSEGSRIVI 250 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td---~-e-al~dADiVI 250 (488)
|||.|+|+|.+|..++..|...+. +++++|.++++++....... ..+... ++ + + .+.++|.||
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~--~v~vid~~~~~~~~~~~~~~--------~~~~~gd~~~~~~l~~~~~~~a~~vi 70 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENN--DVTVIDTDEERLRRLQDRLD--------VRTVVGNGSSPDVLREAGAEDADLLI 70 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--cEEEEECCHHHHHHHHhhcC--------EEEEEeCCCCHHHHHHcCCCcCCEEE
Confidence 589999999999999999988876 89999999987764322111 111111 11 1 2 388999999
Q ss_pred Eec
Q psy12825 251 ITA 253 (488)
Q Consensus 251 ita 253 (488)
++.
T Consensus 71 ~~~ 73 (453)
T PRK09496 71 AVT 73 (453)
T ss_pred Eec
Confidence 985
No 244
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=94.91 E-value=0.064 Score=53.03 Aligned_cols=97 Identities=19% Similarity=0.222 Sum_probs=65.0
Q ss_pred EEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecccccC
Q psy12825 180 ITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSL 258 (488)
Q Consensus 180 IaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~~k 258 (488)
|.|+|| |.+|+.++..|+..+. +|+.++++++........ .. ..+......+++.++|+||.+++.+..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~D~Vvh~a~~~~~ 70 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGANTKWE--GY------KPWAPLAESEALEGADAVINLAGEPIA 70 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCcccce--ee------ecccccchhhhcCCCCEEEECCCCCcc
Confidence 578998 9999999999998886 899999877543211100 00 001111223578899999999876543
Q ss_pred CC----cchHhhHhhhHHHHHHHHHHHhccCC
Q psy12825 259 VG----ETRLQLVDRNVKIFKDLIPKIAKGSP 286 (488)
Q Consensus 259 ~G----~~r~dll~~N~~ii~ei~~~I~~~~p 286 (488)
.+ .....+...|+...+.+.+.+.+...
T Consensus 71 ~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~ 102 (292)
T TIGR01777 71 DKRWTEERKQEIRDSRIDTTRALVEAIAAAEQ 102 (292)
T ss_pred cccCCHHHHHHHHhcccHHHHHHHHHHHhcCC
Confidence 22 12345567788888999999888753
No 245
>PRK07574 formate dehydrogenase; Provisional
Probab=94.91 E-value=0.11 Score=55.10 Aligned_cols=95 Identities=12% Similarity=0.209 Sum_probs=60.0
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
...++|+|||.|.||..++..|..-|. +|+-||+.....+ ..... .+....++ +.++.||+|++..
T Consensus 190 L~gktVGIvG~G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~-----~~~~~------g~~~~~~l~ell~~aDvV~l~l 256 (385)
T PRK07574 190 LEGMTVGIVGAGRIGLAVLRRLKPFDV--KLHYTDRHRLPEE-----VEQEL------GLTYHVSFDSLVSVCDVVTIHC 256 (385)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEECCCCCchh-----hHhhc------CceecCCHHHHhhcCCEEEEcC
Confidence 567899999999999999988876565 8999998652111 11110 12223355 4689999999985
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
... .++-.++- .+.+....|.+++||++-
T Consensus 257 Plt-----------~~T~~li~--~~~l~~mk~ga~lIN~aR 285 (385)
T PRK07574 257 PLH-----------PETEHLFD--ADVLSRMKRGSYLVNTAR 285 (385)
T ss_pred CCC-----------HHHHHHhC--HHHHhcCCCCcEEEECCC
Confidence 211 11222221 233444567898998873
No 246
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=94.90 E-value=0.034 Score=58.38 Aligned_cols=71 Identities=25% Similarity=0.341 Sum_probs=47.0
Q ss_pred EEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE--cCCc----cccCCCcEEEEec
Q psy12825 180 ITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES--GSDI----AMSEGSRIVIITA 253 (488)
Q Consensus 180 IaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~--ttd~----eal~dADiVIita 253 (488)
|.|+|+|.+|+.++..|+......+|++.|++.++++.....+.. ....... ..|. +.++++|+||.++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~l~~~~~~~dvVin~~ 75 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLG-----DRVEAVQVDVNDPESLAELLRGCDVVINCA 75 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TT-----TTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccc-----cceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence 789999999999999998887655899999999988776554411 1111111 1233 3589999999998
Q ss_pred cc
Q psy12825 254 GV 255 (488)
Q Consensus 254 g~ 255 (488)
+.
T Consensus 76 gp 77 (386)
T PF03435_consen 76 GP 77 (386)
T ss_dssp SG
T ss_pred cc
Confidence 53
No 247
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=94.89 E-value=0.58 Score=46.71 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=42.9
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccCCCcEEEEec
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~dADiVIita 253 (488)
++||+|+|+ |.||..++..+....-..-+.++|.++++.... . ...+...+|++ .++++|+||...
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-----~------~~~i~~~~dl~~ll~~~DvVid~t 68 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-----G------ALGVAITDDLEAVLADADVLIDFT 68 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-----C------CCCccccCCHHHhccCCCEEEECC
Confidence 479999999 999999887776543222345588877654321 1 11233346764 466899999664
No 248
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.88 E-value=0.53 Score=45.79 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=39.7
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
++.++|.|+|+ |.+|..++..|+..|. +|++.|.+++.++.....+.+
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~ 56 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKG 56 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHh
Confidence 45679999998 9999999999999887 899999998877665555543
No 249
>PLN02240 UDP-glucose 4-epimerase
Probab=94.85 E-value=0.38 Score=49.23 Aligned_cols=117 Identities=20% Similarity=0.206 Sum_probs=67.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-CCCCCcEEEc--CCcc----ccC--
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-FLRSPKIESG--SDIA----MSE-- 244 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-~~~~~~v~~t--td~e----al~-- 244 (488)
++.+||.|+|+ |.+|.+++..|+..+. +|+++|............+.+... .....++... +|.+ .++
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~ 80 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFAST 80 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhC
Confidence 45679999998 9999999999998885 899998643211111112221110 0011111111 1222 233
Q ss_pred CCcEEEEecccccC-CC-cchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 245 GSRIVIITAGVRSL-VG-ETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 245 dADiVIitag~~~k-~G-~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
++|+||.+++.... .. ......+..|+.....+++.+.+..... +|.+|
T Consensus 81 ~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S 131 (352)
T PLN02240 81 RFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKK-LVFSS 131 (352)
T ss_pred CCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEc
Confidence 68999999875421 11 2334567788887778888777654333 44444
No 250
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=94.82 E-value=0.2 Score=52.32 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=36.5
Q ss_pred hHHHHHHHHHcCCCCeEEEEeCChhHHHH-HHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 189 GMACTYSILTQGIYSNFCLIDSNEDRCKG-EMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 189 G~~ia~~La~~~l~~el~L~Di~~e~l~g-~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
|..+|..|+..|. +|+++|++++.++. ....+... .+..++|. +++++||+||++.
T Consensus 32 G~~MA~~La~aG~--~V~v~Dr~~~~l~~~~~~~l~~~-------Gi~~asd~~eaa~~ADvVIlaV 89 (342)
T PRK12557 32 GSRMAIEFAEAGH--DVVLAEPNRSILSEELWKKVEDA-------GVKVVSDDAEAAKHGEIHILFT 89 (342)
T ss_pred HHHHHHHHHhCCC--eEEEEECCHHHhhHHHHHHHHHC-------CCEEeCCHHHHHhCCCEEEEEC
Confidence 5667778887776 89999998875432 11122211 13334454 6789999999995
No 251
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.82 E-value=0.078 Score=53.98 Aligned_cols=102 Identities=17% Similarity=0.134 Sum_probs=63.7
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCcEEE
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSRIVI 250 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dADiVI 250 (488)
|||.|+|| |.+|+.++..|+..|. +|+.++++.+.... +.+. ..++... +|+ ++++++|+||
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~~~----l~~~-----~v~~v~~Dl~d~~~l~~al~g~d~Vi 69 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKASF----LKEW-----GAELVYGDLSLPETLPPSFKGVTAII 69 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHhhh----Hhhc-----CCEEEECCCCCHHHHHHHHCCCCEEE
Confidence 58999998 9999999999999886 89999987654321 1111 1122221 122 4689999999
Q ss_pred EecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 251 ITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 251 itag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
.+++.... ...++...|......+.+.+++..-.- +|.+|
T Consensus 70 ~~~~~~~~---~~~~~~~~~~~~~~~l~~aa~~~gvkr-~I~~S 109 (317)
T CHL00194 70 DASTSRPS---DLYNAKQIDWDGKLALIEAAKAAKIKR-FIFFS 109 (317)
T ss_pred ECCCCCCC---CccchhhhhHHHHHHHHHHHHHcCCCE-EEEec
Confidence 98643211 112233456666667777777665443 44444
No 252
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=94.81 E-value=0.12 Score=56.08 Aligned_cols=93 Identities=15% Similarity=0.293 Sum_probs=62.9
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
.....++|+|+|.|.+|..+|..+...|. +|+.+|+++.+.....+ +. .++ .++ +.++.||+||.
T Consensus 250 ~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~---~G------~~~---~~leell~~ADIVI~ 315 (476)
T PTZ00075 250 VMIAGKTVVVCGYGDVGKGCAQALRGFGA--RVVVTEIDPICALQAAM---EG------YQV---VTLEDVVETADIFVT 315 (476)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHh---cC------cee---ccHHHHHhcCCEEEE
Confidence 35678899999999999999998877666 89999998765422111 11 111 133 46889999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
+.+.. .++. .+.++...|.++++|++-.
T Consensus 316 atGt~---------------~iI~--~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 316 ATGNK---------------DIIT--LEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred CCCcc---------------cccC--HHHHhccCCCcEEEEcCCC
Confidence 85311 1222 2345555688999999855
No 253
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=94.81 E-value=0.071 Score=53.62 Aligned_cols=105 Identities=22% Similarity=0.238 Sum_probs=66.8
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCcEEE
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSRIVI 250 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dADiVI 250 (488)
+||.|+|+ |.+|..++..|+..+. +|+.+|++++.... +.+. ..++... +|. +.++++|+||
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~----~~~~-----~~~~~~~D~~~~~~l~~~~~~~d~vi 69 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDRRN----LEGL-----DVEIVEGDLRDPASLRKAVAGCRALF 69 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCccccc----cccC-----CceEEEeeCCCHHHHHHHHhCCCEEE
Confidence 48999998 9999999999998886 89999987654321 1110 1111111 222 3577899999
Q ss_pred EecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 251 ITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 251 itag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
..++...............|+.....+.+.+.+..-. .+|+.+
T Consensus 70 ~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 112 (328)
T TIGR03466 70 HVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTS 112 (328)
T ss_pred EeceecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence 9876432222334555667877777777777765433 344444
No 254
>PRK07102 short chain dehydrogenase; Provisional
Probab=94.78 E-value=0.45 Score=45.95 Aligned_cols=46 Identities=24% Similarity=0.381 Sum_probs=38.2
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
+++|.|+|| |.+|..++..|+.+|. +|+++|++++.++....++..
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~ 47 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRA 47 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHH
Confidence 358999998 9999999999998886 899999998877666555543
No 255
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=94.76 E-value=0.21 Score=50.78 Aligned_cols=112 Identities=20% Similarity=0.285 Sum_probs=66.2
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc----ccC--CCcE
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA----MSE--GSRI 248 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e----al~--dADi 248 (488)
|||.|+|| |.+|.+++..|+..+. +|+++|............+.+... ....+... +|.+ .++ ++|+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 76 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLGG--KHPTFVEGDIRNEALLTEILHDHAIDT 76 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhcC--CCceEEEccCCCHHHHHHHHhcCCCCE
Confidence 58999998 9999999999998886 888888643222211112222110 01111111 2222 233 6899
Q ss_pred EEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 249 VIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 249 VIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
||.+++..... .....+.+..|+.....+.+.+.+..-. .+|++|
T Consensus 77 vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 123 (338)
T PRK10675 77 VIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NLIFSS 123 (338)
T ss_pred EEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence 99998654221 1223466778888888888888776433 344444
No 256
>PLN03139 formate dehydrogenase; Provisional
Probab=94.76 E-value=0.15 Score=53.96 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=77.7
Q ss_pred CcEEEEecc-hhHHHHH-HHHH-hhhhHHHHHHHHHHHH-hhhC------CCCCCCCceEEEEecccchHHHHHHHHHcC
Q psy12825 131 QKITVVGAG-QVGMACT-YSIL-TQTMARDAVSTVDRLL-SQVA------PSIESPDQKITVVGAGQVGMACTYSILTQG 200 (488)
Q Consensus 131 ~ki~vvg~g-~vg~~~a-~~~~-~k~la~eivlid~~~~-~e~~------~~~~~~~~KIaIIGAG~vG~~ia~~La~~~ 200 (488)
..|.|..+. .-..+.| |++. +-.+.+.+...++... ++.. .......++|+|||.|.||..++..+..-|
T Consensus 143 ~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG 222 (386)
T PLN03139 143 AGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFN 222 (386)
T ss_pred CCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCC
Confidence 466665442 2223333 3321 2346666665554332 2211 013457789999999999999999887655
Q ss_pred CCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHH
Q psy12825 201 IYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIP 279 (488)
Q Consensus 201 l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~ 279 (488)
. +|+.||......+. . .+. .+....++ +.+++||+|++... .. ..+-.++- .+
T Consensus 223 ~--~V~~~d~~~~~~~~-~---~~~-------g~~~~~~l~ell~~sDvV~l~lP-----lt------~~T~~li~--~~ 276 (386)
T PLN03139 223 C--NLLYHDRLKMDPEL-E---KET-------GAKFEEDLDAMLPKCDVVVINTP-----LT------EKTRGMFN--KE 276 (386)
T ss_pred C--EEEEECCCCcchhh-H---hhc-------CceecCCHHHHHhhCCEEEEeCC-----CC------HHHHHHhC--HH
Confidence 5 89999986422211 1 010 11223356 45789999999852 11 11222221 23
Q ss_pred HHhccCCCcEEEEEeC
Q psy12825 280 KIAKGSPDCILLIISN 295 (488)
Q Consensus 280 ~I~~~~p~a~vIv~TN 295 (488)
.+....|.+++||.+-
T Consensus 277 ~l~~mk~ga~lIN~aR 292 (386)
T PLN03139 277 RIAKMKKGVLIVNNAR 292 (386)
T ss_pred HHhhCCCCeEEEECCC
Confidence 4555568898888873
No 257
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=94.76 E-value=0.12 Score=55.56 Aligned_cols=91 Identities=18% Similarity=0.281 Sum_probs=60.8
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
...++|+|+|+|.+|..++..+...|. +|+.+|+++.++....++ . ..+ .+. ++++++|+||.+.
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A~~~---G------~~v---~~l~eal~~aDVVI~aT 275 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA--RVIVTEVDPICALQAAMD---G------FRV---MTMEEAAELGDIFVTAT 275 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEcCCchhhHHHHhc---C------CEe---cCHHHHHhCCCEEEECC
Confidence 467899999999999999998877776 899999998765332211 1 111 123 5678999999875
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
| |-.++. ...+....+.+++++++-+
T Consensus 276 G---------------~~~vI~--~~~~~~mK~GailiNvG~~ 301 (425)
T PRK05476 276 G---------------NKDVIT--AEHMEAMKDGAILANIGHF 301 (425)
T ss_pred C---------------CHHHHH--HHHHhcCCCCCEEEEcCCC
Confidence 3 222332 1234444567888888754
No 258
>PLN02494 adenosylhomocysteinase
Probab=94.74 E-value=0.097 Score=56.65 Aligned_cols=92 Identities=15% Similarity=0.291 Sum_probs=61.8
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
...++|+|+|.|.+|..++..+...|. +|+.+|+++.++....+ +. + .+. +. ++++++|+||.+.
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~~---~G--~----~vv---~leEal~~ADVVI~tT 317 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA--RVIVTEIDPICALQALM---EG--Y----QVL---TLEDVVSEADIFVTTT 317 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchhhHHHHh---cC--C----eec---cHHHHHhhCCEEEECC
Confidence 467899999999999999998876665 79999998865432111 11 1 111 23 4688999999875
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCc
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPv 297 (488)
+. ..++. ...+....+.++++|++-+.
T Consensus 318 Gt---------------~~vI~--~e~L~~MK~GAiLiNvGr~~ 344 (477)
T PLN02494 318 GN---------------KDIIM--VDHMRKMKNNAIVCNIGHFD 344 (477)
T ss_pred CC---------------ccchH--HHHHhcCCCCCEEEEcCCCC
Confidence 31 11221 33445556789999999864
No 259
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.73 E-value=0.098 Score=55.11 Aligned_cols=75 Identities=15% Similarity=0.333 Sum_probs=50.8
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC-------------------hhHHHHHHHHHhhcCCCCCCCcEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN-------------------EDRCKGEMLDLQHGAPFLRSPKIE 235 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~-------------------~e~l~g~~~dL~~~~~~~~~~~v~ 235 (488)
.+..||.|+|+|.+|+.++..|+..|+ .+|.|+|.+ ..+++..+..+.+.. +..++.
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gv-g~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n---p~v~v~ 208 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGV-GTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN---PDVQVE 208 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC---CCCEEE
Confidence 456799999999999999999999996 589999986 234444444454432 223332
Q ss_pred EcCC------c-cccCCCcEEEEec
Q psy12825 236 SGSD------I-AMSEGSRIVIITA 253 (488)
Q Consensus 236 ~ttd------~-eal~dADiVIita 253 (488)
.... . +-++++|+||.+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~D~Vv~~~ 233 (376)
T PRK08762 209 AVQERVTSDNVEALLQDVDVVVDGA 233 (376)
T ss_pred EEeccCChHHHHHHHhCCCEEEECC
Confidence 2211 1 2367899988885
No 260
>PRK07832 short chain dehydrogenase; Provisional
Probab=94.71 E-value=0.56 Score=46.30 Aligned_cols=114 Identities=21% Similarity=0.294 Sum_probs=66.6
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc--------------cc
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI--------------AM 242 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~--------------ea 242 (488)
+++.|+|+ |.+|..++..|+..|. +|++++++++.++....++..... ........|. +.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGG---TVPEHRALDISDYDAVAAFAADIHAA 75 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC---CcceEEEeeCCCHHHHHHHHHHHHHh
Confidence 47899998 9999999999998886 799999988877666556543211 1111111121 12
Q ss_pred cCCCcEEEEecccccCC---Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 243 SEGSRIVIITAGVRSLV---GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 243 l~dADiVIitag~~~k~---G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
+...|+||.++|..... ..+. ...+..|+. +.+.+...+.+....+.+|+++-.
T Consensus 76 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~ 139 (272)
T PRK07832 76 HGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSA 139 (272)
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccc
Confidence 45689999998764221 1122 223444444 334444444433334566666543
No 261
>PLN02858 fructose-bisphosphate aldolase
Probab=94.70 E-value=0.12 Score=62.99 Aligned_cols=65 Identities=8% Similarity=0.077 Sum_probs=50.0
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+..||++||.|.||..++..|+..|+ +|..||+++++.+... ..- .....++ +..++||+||++.
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~--~v~v~dr~~~~~~~l~----~~G-------a~~~~s~~e~a~~advVi~~l 68 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGF--KVQAFEISTPLMEKFC----ELG-------GHRCDSPAEAAKDAAALVVVL 68 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCC--eEEEEcCCHHHHHHHH----HcC-------CeecCCHHHHHhcCCEEEEEc
Confidence 35689999999999999999999987 8999999987766432 211 1123455 5678899999986
No 262
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=94.69 E-value=0.29 Score=53.95 Aligned_cols=133 Identities=19% Similarity=0.319 Sum_probs=85.7
Q ss_pred CCCCCceEEEEecccchHHHHHHHHH----cCC-----CCeEEEEeCCh----hH---HHHHHHHHhhcCCCCCCCcEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILT----QGI-----YSNFCLIDSNE----DR---CKGEMLDLQHGAPFLRSPKIES 236 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~----~~l-----~~el~L~Di~~----e~---l~g~~~dL~~~~~~~~~~~v~~ 236 (488)
...+..||++.|||+.|.++|..|.. .|+ ...++++|..- ++ +......+.+.. .......
T Consensus 293 ~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~---~~~~~~~ 369 (559)
T PTZ00317 293 VPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTD---ISAEDSS 369 (559)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccc---ccccccc
Confidence 33455799999999999999988764 455 25899999631 11 222333333221 0011001
Q ss_pred cCCc-cccCCC--cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCc---hhHHHHHHHhcCC
Q psy12825 237 GSDI-AMSEGS--RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV---DVLTYISWKLSGF 310 (488)
Q Consensus 237 ttd~-eal~dA--DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPv---di~t~~~~k~sg~ 310 (488)
..++ ++++++ |++|=+.+.+ |. +-+++.+.|.++|+..+|+=.|||. .+..+-+++++.
T Consensus 370 ~~~L~e~v~~~KPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~- 434 (559)
T PTZ00317 370 LKTLEDVVRFVKPTALLGLSGVG---GV-----------FTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTN- 434 (559)
T ss_pred CCCHHHHHhccCCCEEEEecCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhcc-
Confidence 2455 678888 9888665433 21 2367888999999999999999997 566777777652
Q ss_pred CCCcEEeecCChHH
Q psy12825 311 PKNRVIGSGTNLDS 324 (488)
Q Consensus 311 p~~rViG~gt~lds 324 (488)
-+-+|++|.-.+.
T Consensus 435 -Grai~AtGspf~p 447 (559)
T PTZ00317 435 -GRAIVASGSPFPP 447 (559)
T ss_pred -CCEEEEECCCCCC
Confidence 1358888876554
No 263
>PRK12829 short chain dehydrogenase; Provisional
Probab=94.68 E-value=0.58 Score=45.47 Aligned_cols=76 Identities=17% Similarity=0.213 Sum_probs=51.4
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc---------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA--------- 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e--------- 241 (488)
.++.++|.|+|+ |.+|..++..|+.+|. +|++++++++.++....++.+. ...+... +|.+
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~ 80 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSEAALAATAARLPGA-----KVTATVADVADPAQVERVFDTA 80 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcC-----ceEEEEccCCCHHHHHHHHHHH
Confidence 456789999999 9999999999998887 7999999877665443333221 0011111 1211
Q ss_pred --ccCCCcEEEEecccc
Q psy12825 242 --MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 --al~dADiVIitag~~ 256 (488)
.+.+.|+||..++..
T Consensus 81 ~~~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 81 VERFGGLDVLVNNAGIA 97 (264)
T ss_pred HHHhCCCCEEEECCCCC
Confidence 135789999998764
No 264
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.68 E-value=0.32 Score=50.58 Aligned_cols=96 Identities=21% Similarity=0.266 Sum_probs=60.7
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc---cccCC-CcE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI---AMSEG-SRI 248 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~---eal~d-ADi 248 (488)
+..+..+|+|+|+|.+|..-++.+...+ -+|+.+|+++++++ .+.+|-. ..+..+.|. +++++ +|+
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e-~a~~lGA-------d~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLE-LAKKLGA-------DHVINSSDSDALEAVKEIADA 232 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHH-HHHHhCC-------cEEEEcCCchhhHHhHhhCcE
Confidence 5567789999999988865444433356 49999999998776 3444421 112222232 33333 999
Q ss_pred EEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCc
Q psy12825 249 VIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297 (488)
Q Consensus 249 VIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPv 297 (488)
||.+++ + ..+-..++-..+.+.++.+++|.
T Consensus 233 ii~tv~-~------------------~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 233 IIDTVG-P------------------ATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred EEECCC-h------------------hhHHHHHHHHhcCCEEEEECCCC
Confidence 999974 2 12223334445688899999994
No 265
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=94.67 E-value=0.15 Score=52.60 Aligned_cols=114 Identities=17% Similarity=0.095 Sum_probs=68.4
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc----ccC--CC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA----MSE--GS 246 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e----al~--dA 246 (488)
+.++|.|+|+ |.+|++++..|+..|. +|+.+|++..........+... ........ +|.+ .++ +.
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNLA----KKIEDHFGDIRDAAKLRKAIAEFKP 76 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhhc----CCceEEEccCCCHHHHHHHHhhcCC
Confidence 4578999998 9999999999999886 8899998665433222122110 01111111 1222 244 35
Q ss_pred cEEEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 247 RIVIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 247 DiVIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
|+||.+++.+... .......+..|+.....+.+.+.+.+.-..+|++|.
T Consensus 77 d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 77 EIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred CEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 9999998753221 112345567788777778887776542234666554
No 266
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=94.66 E-value=0.69 Score=45.24 Aligned_cols=72 Identities=15% Similarity=0.252 Sum_probs=51.5
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc-----------c
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA-----------M 242 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e-----------a 242 (488)
|+|.|+|+ |.+|..++..|+..|. +|++.|++++.++....++.+.. .... ...| .+ .
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~----~~~~-~~~Dv~d~~~~~~~~~~~~~~ 73 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNEENLEKALKELKEYG----EVYA-VKADLSDKDDLKNLVKEAWEL 73 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC----CceE-EEcCCCCHHHHHHHHHHHHHh
Confidence 58999998 9999999999999987 89999999887776666665321 1111 1122 11 2
Q ss_pred cCCCcEEEEecccc
Q psy12825 243 SEGSRIVIITAGVR 256 (488)
Q Consensus 243 l~dADiVIitag~~ 256 (488)
+..-|++|.++|..
T Consensus 74 ~g~id~li~naG~~ 87 (259)
T PRK08340 74 LGGIDALVWNAGNV 87 (259)
T ss_pred cCCCCEEEECCCCC
Confidence 35789999998864
No 267
>PRK08643 acetoin reductase; Validated
Probab=94.66 E-value=0.57 Score=45.54 Aligned_cols=112 Identities=18% Similarity=0.190 Sum_probs=67.3
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc--------------c
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI--------------A 241 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~--------------e 241 (488)
+++.|+|+ |.+|..++..|+..|. +|+++|.+.+.++....++.+.. .++. ...|. +
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDG-----GKAIAVKADVSDRDQVFAAVRQVVD 75 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-----CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 57888898 9999999999998886 89999998877776666665421 1111 11221 1
Q ss_pred ccCCCcEEEEecccccC-CC--cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 242 MSEGSRIVIITAGVRSL-VG--ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 242 al~dADiVIitag~~~k-~G--~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
.+.+.|+||.++|.... +. .+. ...+..|+. +.+.+.+.+.+..+++.+++++-.
T Consensus 76 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~ 140 (256)
T PRK08643 76 TFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQ 140 (256)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence 23468999999876421 11 111 122344443 234444444444445667776643
No 268
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.66 E-value=0.092 Score=49.32 Aligned_cols=96 Identities=17% Similarity=0.235 Sum_probs=59.4
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
.....++|+|||.|.+|..+|..+..-|. +|+.||+...... ...+. .+.. .++ +.++.||+|++
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~----~~~~~-------~~~~-~~l~ell~~aDiv~~ 97 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGM--RVIGYDRSPKPEE----GADEF-------GVEY-VSLDELLAQADIVSL 97 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT---EEEEEESSCHHHH----HHHHT-------TEEE-SSHHHHHHH-SEEEE
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCc--eeEEecccCChhh----hcccc-------ccee-eehhhhcchhhhhhh
Confidence 55678999999999999999998875565 9999999875333 11111 1222 355 46889999999
Q ss_pred eccc-ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 252 TAGV-RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 252 tag~-~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
+... +...++ + | .+.+....|.+++||++--
T Consensus 98 ~~plt~~T~~l-----i--~-------~~~l~~mk~ga~lvN~aRG 129 (178)
T PF02826_consen 98 HLPLTPETRGL-----I--N-------AEFLAKMKPGAVLVNVARG 129 (178)
T ss_dssp -SSSSTTTTTS-----B--S-------HHHHHTSTTTEEEEESSSG
T ss_pred hhcccccccee-----e--e-------eeeeeccccceEEEeccch
Confidence 8632 111111 1 1 2233445578888988754
No 269
>KOG1205|consensus
Probab=94.64 E-value=0.19 Score=51.03 Aligned_cols=119 Identities=20% Similarity=0.283 Sum_probs=85.8
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---c-------
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---I------- 240 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~------- 240 (488)
+.+..+.|+|.|| ..+|.++|+.++..|. .++|+-...++++....++..... .. ++. ...| .
T Consensus 8 e~~~~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~--~~-~v~~~~~Dvs~~~~~~~~~ 82 (282)
T KOG1205|consen 8 ERLAGKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGS--LE-KVLVLQLDVSDEESVKKFV 82 (282)
T ss_pred HHhCCCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCC--cC-ccEEEeCccCCHHHHHHHH
Confidence 4456778889999 8899999999999997 789999999999988788887643 22 222 1122 1
Q ss_pred ----cccCCCcEEEEecccccCCCc-c------hHhhHhhh----HHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 241 ----AMSEGSRIVIITAGVRSLVGE-T------RLQLVDRN----VKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 241 ----eal~dADiVIitag~~~k~G~-~------r~dll~~N----~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
..+.+.|+.|..+|..+ .+. + ....+..| +-.-+...+.|.+.+ ++.|++++...+
T Consensus 83 ~~~~~~fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG 153 (282)
T KOG1205|consen 83 EWAIRHFGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAG 153 (282)
T ss_pred HHHHHhcCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEecccc
Confidence 24779999999999876 321 1 12233344 456788888888887 788888876665
No 270
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.64 E-value=0.25 Score=53.24 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=50.5
Q ss_pred CCCceEEEEecccchHH-HHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMA-CTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~-ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIita 253 (488)
.+.+||.|+|.|..|.+ +|..|...|. +|...|.+.... ..+|... ...+....+.+.+.++|+||.+.
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~--~V~~~D~~~~~~---~~~l~~~-----gi~~~~~~~~~~~~~~d~vv~sp 74 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGY--KVSGSDLKESAV---TQRLLEL-----GAIIFIGHDAENIKDADVVVYSS 74 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCC--eEEEECCCCChH---HHHHHHC-----CCEEeCCCCHHHCCCCCEEEECC
Confidence 35578999999999999 6888888887 899999865421 2234331 11222222345678999999998
Q ss_pred cccc
Q psy12825 254 GVRS 257 (488)
Q Consensus 254 g~~~ 257 (488)
+++.
T Consensus 75 gi~~ 78 (461)
T PRK00421 75 AIPD 78 (461)
T ss_pred CCCC
Confidence 8764
No 271
>PRK07814 short chain dehydrogenase; Provisional
Probab=94.64 E-value=0.48 Score=46.53 Aligned_cols=114 Identities=17% Similarity=0.153 Sum_probs=68.9
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---ccc-------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IAM------- 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~ea------- 242 (488)
++.+++.|+|+ |.+|.+++..|+..|. +|+++|++++.++....++.... .++. ...| .+.
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 80 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAAG-----RRAHVVAADLAHPEATAGLAGQ 80 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEccCCCHHHHHHHHHH
Confidence 45678999998 8899999999998887 89999999887766665554321 1121 1122 221
Q ss_pred ----cCCCcEEEEecccccCC---Ccc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 243 ----SEGSRIVIITAGVRSLV---GET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 243 ----l~dADiVIitag~~~k~---G~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+...|+||..++..... ..+ -.+.+..|.. +.+...+.+.+..+.+.+++++.
T Consensus 81 ~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS 147 (263)
T PRK07814 81 AVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISS 147 (263)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEcc
Confidence 24689999998753221 111 1223444443 33444444444444566666664
No 272
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=94.63 E-value=0.031 Score=49.11 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=43.4
Q ss_pred eEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc-CCccccCCCcEEEEec
Q psy12825 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG-SDIAMSEGSRIVIITA 253 (488)
Q Consensus 179 KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t-td~eal~dADiVIita 253 (488)
||+|||| |.+|..+...|.......-+.+++.....-. ...+..... .....+... .+.+.+.++|+||.+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Dvvf~a~ 74 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGK-PLSEVFPHP--KGFEDLSVEDADPEELSDVDVVFLAL 74 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTS-BHHHTTGGG--TTTEEEBEEETSGHHHTTESEEEE-S
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCC-eeehhcccc--ccccceeEeecchhHhhcCCEEEecC
Confidence 7999997 9999999988888655545666776551111 111121110 011222222 3567899999999995
No 273
>PRK07774 short chain dehydrogenase; Provisional
Probab=94.62 E-value=0.47 Score=45.80 Aligned_cols=76 Identities=18% Similarity=0.235 Sum_probs=51.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc---------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA--------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e--------- 241 (488)
++.+++.|+|+ |.+|..++..|+..|. +|+++|++++.++....++.+... . ......| .+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~---~-~~~~~~Dl~~~~~~~~~~~~~ 77 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINAEGAERVAKQIVADGG---T-AIAVQVDVSDPDSAKAMADAT 77 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC---c-EEEEEcCCCCHHHHHHHHHHH
Confidence 34578999999 9999999999999886 899999987766555555543210 0 0111122 21
Q ss_pred --ccCCCcEEEEecccc
Q psy12825 242 --MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 --al~dADiVIitag~~ 256 (488)
.+...|+||.+++..
T Consensus 78 ~~~~~~id~vi~~ag~~ 94 (250)
T PRK07774 78 VSAFGGIDYLVNNAAIY 94 (250)
T ss_pred HHHhCCCCEEEECCCCc
Confidence 124689999999864
No 274
>PRK07326 short chain dehydrogenase; Provisional
Probab=94.59 E-value=0.56 Score=44.88 Aligned_cols=46 Identities=13% Similarity=0.322 Sum_probs=38.0
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
..++|.|+|| |.+|..++..|+..+. +|++++++++++.....++.
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~ 51 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELN 51 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHh
Confidence 3568999998 9999999999998876 79999999887766555554
No 275
>PRK12939 short chain dehydrogenase; Provisional
Probab=94.54 E-value=0.56 Score=45.12 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=53.2
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc---------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA--------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e--------- 241 (488)
++.++|.|+|+ |.+|..++..|+..|. +|++++.+++.++....++.... ....+ ...| .+
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~-~~~Dl~~~~~~~~~~~~~ 78 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG---GRAHA-IAADLADPASVQRFFDAA 78 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEE-EEccCCCHHHHHHHHHHH
Confidence 45688999998 9999999999998886 89999998887776666664321 11111 1122 21
Q ss_pred --ccCCCcEEEEecccc
Q psy12825 242 --MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 --al~dADiVIitag~~ 256 (488)
.+.+.|+||.+++..
T Consensus 79 ~~~~~~id~vi~~ag~~ 95 (250)
T PRK12939 79 AAALGGLDGLVNNAGIT 95 (250)
T ss_pred HHHcCCCCEEEECCCCC
Confidence 125789999998764
No 276
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.54 E-value=0.16 Score=54.20 Aligned_cols=92 Identities=14% Similarity=0.190 Sum_probs=59.7
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
...++|+|+|+|.+|..++..+...|. +|+.+|+++.+.....+ +. ..+. .-.++++++|+||.+.|
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A~~---~G------~~v~--~leeal~~aDVVItaTG 259 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA--RVIVTEVDPIRALEAAM---DG------FRVM--TMEEAAKIGDIFITATG 259 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC--EEEEEeCChhhHHHHHh---cC------CEeC--CHHHHHhcCCEEEECCC
Confidence 567899999999999999998876665 89999998865432221 11 1111 11246889999988753
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
|..++.. ..+....+.+++++++-.
T Consensus 260 ---------------~~~vI~~--~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 260 ---------------NKDVIRG--EHFENMKDGAIVANIGHF 284 (406)
T ss_pred ---------------CHHHHHH--HHHhcCCCCcEEEEECCC
Confidence 2233331 233344567888888754
No 277
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=94.53 E-value=0.36 Score=47.13 Aligned_cols=116 Identities=14% Similarity=0.089 Sum_probs=68.7
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---ccc-------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IAM------- 242 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~ea------- 242 (488)
.++.++|.|+|+ |.+|..++..|+..|. +|+++|.+.+.++....++.... ....+ ...| .++
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~---~~~~~-~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEALG---IDALW-IAADVADEADIERLAEE 82 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC---CeEEE-EEccCCCHHHHHHHHHH
Confidence 345678999998 9999999999998887 89999998877765555554321 01111 1222 222
Q ss_pred ----cCCCcEEEEecccccCCC---cc---hHhhHhhhHHHHHHHHHHHhcc----CCCcEEEEEeC
Q psy12825 243 ----SEGSRIVIITAGVRSLVG---ET---RLQLVDRNVKIFKDLIPKIAKG----SPDCILLIISN 295 (488)
Q Consensus 243 ----l~dADiVIitag~~~k~G---~~---r~dll~~N~~ii~ei~~~I~~~----~p~a~vIv~TN 295 (488)
+...|.||.+++...... .+ -.+.+..|+.-...+.+.+.++ .+...+++++.
T Consensus 83 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS 149 (259)
T PRK08213 83 TLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS 149 (259)
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 246799999987532111 11 1233456655444445444332 23345666654
No 278
>PRK08818 prephenate dehydrogenase; Provisional
Probab=94.52 E-value=0.15 Score=53.66 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=41.6
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
..++|+|||. |.||..++..|-.. ...+|+-+|++++ ..+++ +.+++||+||+++
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~-~~~~V~g~D~~d~----------------------~~~~~~~~v~~aDlVilav 59 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTR-MQLEVIGHDPADP----------------------GSLDPATLLQRADVLIFSA 59 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhc-CCCEEEEEcCCcc----------------------ccCCHHHHhcCCCEEEEeC
Confidence 4579999999 99999999998765 2448888997411 01233 4688999999996
No 279
>KOG1502|consensus
Probab=94.52 E-value=0.5 Score=48.87 Aligned_cols=117 Identities=20% Similarity=0.189 Sum_probs=74.0
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHH--HHHHHhhcCCCCCCCcEEEc--CCc----cccCCC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKG--EMLDLQHGAPFLRSPKIESG--SDI----AMSEGS 246 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g--~~~dL~~~~~~~~~~~v~~t--td~----eal~dA 246 (488)
..++|+|.|| |.+|+.++..|+.+|+ +|+=-=++++..+. +..+|...- ...++... .|+ +++++|
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~---~~l~l~~aDL~d~~sf~~ai~gc 79 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAK---ERLKLFKADLLDEGSFDKAIDGC 79 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCc---ccceEEeccccccchHHHHHhCC
Confidence 5679999999 9999999999999998 44444333333222 344554321 11222221 133 589999
Q ss_pred cEEEEecccccCCCc-chHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 247 RIVIITAGVRSLVGE-TRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 247 DiVIitag~~~k~G~-~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
|.|+=++....-... ...+++.-.++-...+.+.+.++. ...=+++|.-..
T Consensus 80 dgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~a 131 (327)
T KOG1502|consen 80 DGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSSTA 131 (327)
T ss_pred CEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccHH
Confidence 999999853221111 244667777777788888888876 455577776543
No 280
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.45 E-value=0.31 Score=49.22 Aligned_cols=38 Identities=34% Similarity=0.441 Sum_probs=32.5
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN 211 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~ 211 (488)
...+..+|+|+|+|.+|+.++..|+..|+ .+|.|+|-+
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~GV-g~itLiD~D 63 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALARTGI-GAITLIDMD 63 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCC
Confidence 44466799999999999999999999986 489999864
No 281
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.44 E-value=0.19 Score=53.59 Aligned_cols=70 Identities=19% Similarity=0.360 Sum_probs=49.3
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CC---c--cccCCCc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SD---I--AMSEGSR 247 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td---~--eal~dAD 247 (488)
..+++|.|+|+|.+|..++..|...+. +++++|.++++.+.......+ ..+... ++ + ..+++||
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~--~v~vid~~~~~~~~~~~~~~~-------~~~i~gd~~~~~~L~~~~~~~a~ 299 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY--SVKLIERDPERAEELAEELPN-------TLVLHGDGTDQELLEEEGIDEAD 299 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHCCC-------CeEEECCCCCHHHHHhcCCccCC
Confidence 457899999999999999998887776 899999999876543322211 112211 12 2 3578999
Q ss_pred EEEEec
Q psy12825 248 IVIITA 253 (488)
Q Consensus 248 iVIita 253 (488)
.||.+.
T Consensus 300 ~vi~~~ 305 (453)
T PRK09496 300 AFIALT 305 (453)
T ss_pred EEEECC
Confidence 998874
No 282
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.43 E-value=0.66 Score=46.77 Aligned_cols=76 Identities=18% Similarity=0.238 Sum_probs=53.3
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc---c---------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI---A--------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~---e--------- 241 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|++.+.++....++.... ....+ ...|. +
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~~~l~~~~~~l~~~~---~~~~~-~~~Dl~d~~~v~~~~~~~ 111 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGA--TVVAVARREDLLDAVADRITRAG---GDAMA-VPCDLSDLDAVDALVADV 111 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CcEEE-EEccCCCHHHHHHHHHHH
Confidence 34578999998 9999999999999886 89999999888876666654321 01111 11221 1
Q ss_pred --ccCCCcEEEEecccc
Q psy12825 242 --MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 --al~dADiVIitag~~ 256 (488)
.+...|++|.++|..
T Consensus 112 ~~~~g~id~li~~AG~~ 128 (293)
T PRK05866 112 EKRIGGVDILINNAGRS 128 (293)
T ss_pred HHHcCCCCEEEECCCCC
Confidence 234789999998864
No 283
>PRK06198 short chain dehydrogenase; Provisional
Probab=94.42 E-value=0.72 Score=44.85 Aligned_cols=114 Identities=13% Similarity=0.199 Sum_probs=66.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCe-EEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc-------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSN-FCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~e-l~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e------- 241 (488)
++.++|.|+|+ |.+|..++..|+..+. + |+++|++.+.+.....++... ..++. ...| ++
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~ 76 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNAEKGEAQAAELEAL-----GAKAVFVQADLSDVEDCRRVVA 76 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHHHHhc-----CCeEEEEEccCCCHHHHHHHHH
Confidence 45678999999 9999999999998876 5 999999877665544444221 11221 1112 21
Q ss_pred ----ccCCCcEEEEecccccCC---CcchH---hhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 ----MSEGSRIVIITAGVRSLV---GETRL---QLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 ----al~dADiVIitag~~~k~---G~~r~---dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+.+.|+||.+++..... ..+.. ..+..|+. +++...+.+.+....+.+++++.
T Consensus 77 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss 144 (260)
T PRK06198 77 AADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGS 144 (260)
T ss_pred HHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 124689999998865321 11222 22344443 33444455544433455666654
No 284
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=94.39 E-value=0.58 Score=47.43 Aligned_cols=115 Identities=17% Similarity=0.123 Sum_probs=66.6
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCcEE
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSRIV 249 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dADiV 249 (488)
.++|.|+|+ |.+|++++..|+..|. +|++++++.+..... ..+...........+... +|. +.++++|+|
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKT-DHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhH-HHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 578999998 9999999999999887 788887766544322 111111000001111111 122 246789999
Q ss_pred EEecccccCC-C-cchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 250 IITAGVRSLV-G-ETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 250 Iitag~~~k~-G-~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
|.+++..... . ......+..|+.-...+.+.+.++..-..+|++|
T Consensus 82 ih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~S 128 (325)
T PLN02989 82 FHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTS 128 (325)
T ss_pred EEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEec
Confidence 9998753211 1 1223456677777777777766653222344443
No 285
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=94.39 E-value=0.11 Score=56.69 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=50.4
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIita 253 (488)
.+.+++.|+|+|.+|.+++..|+..|. +|.++|++.++++.....+.. ......+..++.++|+||++.
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~--~V~i~~R~~~~~~~la~~~~~--------~~~~~~~~~~l~~~DiVInat 398 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA--ELLIFNRTKAHAEALASRCQG--------KAFPLESLPELHRIDIIINCL 398 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcc--------ceechhHhcccCCCCEEEEcC
Confidence 356789999999999999999998886 899999988777654433211 111112334578999999996
No 286
>PLN02858 fructose-bisphosphate aldolase
Probab=94.39 E-value=0.1 Score=63.60 Aligned_cols=66 Identities=15% Similarity=0.336 Sum_probs=50.6
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAG 254 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag 254 (488)
..++|++||.|.||..++..|+..|+ +|..||+++++++.. .+.. . ....++ +.+++||+||++..
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~--~V~v~dr~~~~~~~l----~~~G------a-~~~~s~~e~~~~aDvVi~~V~ 389 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNF--SVCGYDVYKPTLVRF----ENAG------G-LAGNSPAEVAKDVDVLVIMVA 389 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHH----HHcC------C-eecCCHHHHHhcCCEEEEecC
Confidence 45789999999999999999999987 899999998776542 2211 1 113355 56889999999974
No 287
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.37 E-value=0.052 Score=57.17 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=50.8
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cC---Cc-cccCCCcEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GS---DI-AMSEGSRIV 249 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-tt---d~-eal~dADiV 249 (488)
.++.||+|+|+|.+|...+..+...|. +|..+|+++++++.....+.. .+.. .. ++ +.++++|+|
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa--~V~v~d~~~~~~~~l~~~~g~--------~v~~~~~~~~~l~~~l~~aDvV 234 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA--TVTILDINIDRLRQLDAEFGG--------RIHTRYSNAYEIEDAVKRADLL 234 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHhcCc--------eeEeccCCHHHHHHHHccCCEE
Confidence 467889999999999999888887776 799999998876543322211 1111 11 22 457899999
Q ss_pred EEecccc
Q psy12825 250 IITAGVR 256 (488)
Q Consensus 250 Iitag~~ 256 (488)
|.++..+
T Consensus 235 I~a~~~~ 241 (370)
T TIGR00518 235 IGAVLIP 241 (370)
T ss_pred EEccccC
Confidence 9997543
No 288
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.37 E-value=0.35 Score=52.53 Aligned_cols=114 Identities=13% Similarity=0.120 Sum_probs=67.2
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dADiVIit 252 (488)
....+||.|+|+|..|.+++..|...|. +|..+|.+...... .+... ..++....+ .+.+.++|+||.+
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~--~V~~~D~~~~~~~~---~l~~~-----gi~~~~~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGC--DVVVADDNETARHK---LIEVT-----GVADISTAEASDQLDSFSLVVTS 81 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCC--EEEEECCChHHHHH---HHHhc-----CcEEEeCCCchhHhcCCCEEEeC
Confidence 3455789999999999999999988887 89999976543211 11211 112322222 3457899999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHh-----ccCCCcEEEEEeCCch
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIA-----KGSPDCILLIISNPVD 298 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~-----~~~p~a~vIv~TNPvd 298 (488)
.+++... .........+++++.++.-... .+.....+|-+|-..+
T Consensus 82 pgi~~~~-p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnG 131 (473)
T PRK00141 82 PGWRPDS-PLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNG 131 (473)
T ss_pred CCCCCCC-HHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCc
Confidence 8876432 1222223455666655553322 1221223666665544
No 289
>PLN02214 cinnamoyl-CoA reductase
Probab=94.36 E-value=0.21 Score=51.58 Aligned_cols=108 Identities=22% Similarity=0.215 Sum_probs=67.9
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHH-HHHHhhcCCCCCCCcEEEcCC------c-cccCCC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGE-MLDLQHGAPFLRSPKIESGSD------I-AMSEGS 246 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~-~~dL~~~~~~~~~~~v~~ttd------~-eal~dA 246 (488)
++++|.|+|+ |.+|++++..|+.+|. +|+.++++.+..... ...+... .....+. ..| + ++++++
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~-~~Dl~d~~~~~~~~~~~ 82 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGG---KERLILC-KADLQDYEALKAAIDGC 82 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCC---CCcEEEE-ecCcCChHHHHHHHhcC
Confidence 4578999999 9999999999999886 888888865543211 1122110 0011111 122 2 357899
Q ss_pred cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEE
Q psy12825 247 RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLII 293 (488)
Q Consensus 247 DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~ 293 (488)
|+||.+++... ....+.+..|+.-...+.+.+.+..... +|++
T Consensus 83 d~Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~r-~V~~ 125 (342)
T PLN02214 83 DGVFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVKR-VVIT 125 (342)
T ss_pred CEEEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCCE-EEEe
Confidence 99999987432 2234556778887777887777664333 4443
No 290
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.33 E-value=0.51 Score=45.63 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=39.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
++.++|.|+|+ |.+|..++..|+..|. +|++++++++.++....++.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~ 49 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQ 49 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHH
Confidence 34578999998 9999999999998886 89999999887776666664
No 291
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=94.33 E-value=0.19 Score=51.21 Aligned_cols=75 Identities=13% Similarity=0.232 Sum_probs=51.2
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh-------------------hHHHHHHHHHhhcCCCCCCCcEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE-------------------DRCKGEMLDLQHGAPFLRSPKIE 235 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~-------------------e~l~g~~~dL~~~~~~~~~~~v~ 235 (488)
++..+|.|+|+|.+|..++..|+..|+ .+|.|+|.+. .+++.....|... .+..+|.
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGV-g~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eL---Np~V~V~ 92 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGV-KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAEL---NPYVPVT 92 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHH---CCCCEEE
Confidence 345699999999999999999999997 5899999632 2233333333332 2234554
Q ss_pred EcC---CccccCCCcEEEEec
Q psy12825 236 SGS---DIAMSEGSRIVIITA 253 (488)
Q Consensus 236 ~tt---d~eal~dADiVIita 253 (488)
..+ +.+-+.+.|+||.+.
T Consensus 93 ~~~~~~~~~~l~~fdvVV~~~ 113 (286)
T cd01491 93 VSTGPLTTDELLKFQVVVLTD 113 (286)
T ss_pred EEeccCCHHHHhcCCEEEEec
Confidence 432 235689999998885
No 292
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=94.32 E-value=0.86 Score=44.38 Aligned_cols=114 Identities=11% Similarity=0.141 Sum_probs=68.4
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc-----------
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA----------- 241 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e----------- 241 (488)
++|.|+|+ |.+|.+++..|+..+. +|+++|.+.+.++....++.... . ..++. ...| .+
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~--~-~~~~~~~~~D~~~~~~i~~~~~~~~~ 77 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEY--G-EGMAYGFGADATSEQSVLALSRGVDE 77 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhc--C-CceeEEEEccCCCHHHHHHHHHHHHH
Confidence 46899998 9999999999999886 89999998877765555554321 0 01111 1112 11
Q ss_pred ccCCCcEEEEecccccCC---CcchH---hhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 242 MSEGSRIVIITAGVRSLV---GETRL---QLVDRNVK----IFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 242 al~dADiVIitag~~~k~---G~~r~---dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
.+...|+||.+++.+... ..... ..+..|+. +.+.+.+.+.+..+++.+|+++..
T Consensus 78 ~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~ 142 (259)
T PRK12384 78 IFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSK 142 (259)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Confidence 124679999998765321 11222 22344443 355666666555444567776654
No 293
>KOG1201|consensus
Probab=94.30 E-value=0.12 Score=52.48 Aligned_cols=132 Identities=14% Similarity=0.194 Sum_probs=82.9
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC-CCCCCCcEE------EcCC--ccc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA-PFLRSPKIE------SGSD--IAM 242 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~-~~~~~~~v~------~ttd--~ea 242 (488)
.+.+...|.|.|+ +.+|..+|+.++..+- .++|+|+|.+-.+..+..+++.- .+.-.+.++ ...+ .++
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHh
Confidence 5667778899998 6778889999999886 89999999987777777777531 000011111 1111 146
Q ss_pred cCCCcEEEEecccc-cCCCc--chHhh---Hhhh----HHHHHHHHHHHhccCCCcEEEEEe------CCchhHHHHHHH
Q psy12825 243 SEGSRIVIITAGVR-SLVGE--TRLQL---VDRN----VKIFKDLIPKIAKGSPDCILLIIS------NPVDVLTYISWK 306 (488)
Q Consensus 243 l~dADiVIitag~~-~k~G~--~r~dl---l~~N----~~ii~ei~~~I~~~~p~a~vIv~T------NPvdi~t~~~~k 306 (488)
..+.|++|..||+. .++.. ++.++ +.-| .-+.+.+...|.+.+. +.|+.++ -|.....|-..|
T Consensus 112 ~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~-GHIV~IaS~aG~~g~~gl~~YcaSK 190 (300)
T KOG1201|consen 112 VGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNN-GHIVTIASVAGLFGPAGLADYCASK 190 (300)
T ss_pred cCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCC-ceEEEehhhhcccCCccchhhhhhH
Confidence 78999999999864 34332 33221 2333 3467888899888654 4455543 334455555544
Q ss_pred h
Q psy12825 307 L 307 (488)
Q Consensus 307 ~ 307 (488)
+
T Consensus 191 ~ 191 (300)
T KOG1201|consen 191 F 191 (300)
T ss_pred H
Confidence 3
No 294
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=94.30 E-value=0.28 Score=48.56 Aligned_cols=152 Identities=16% Similarity=0.215 Sum_probs=92.0
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-----------cccC
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-----------AMSE 244 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-----------eal~ 244 (488)
.+-|.|.|| +.+|..+|..|+..|. .|+|..++.++|+.++.++.+.........| +|+ +.+.
T Consensus 6 ~kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~~~DV---tD~~~~~~~i~~~~~~~g 80 (246)
T COG4221 6 GKVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALALALDV---TDRAAVEAAIEALPEEFG 80 (246)
T ss_pred CcEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEEeecc---CCHHHHHHHHHHHHHhhC
Confidence 345677799 8889999999999998 9999999999999999988841100111111 222 4577
Q ss_pred CCcEEEEecccccCCC------cchHhhHhhhHHHH----HHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCc
Q psy12825 245 GSRIVIITAGVRSLVG------ETRLQLVDRNVKIF----KDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNR 314 (488)
Q Consensus 245 dADiVIitag~~~k~G------~~r~dll~~N~~ii----~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~r 314 (488)
+.|++|..+|.....- .+-..++..|+.-+ +.+...|.+. ..+.|||.+--... ..||-..
T Consensus 81 ~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r-~~G~IiN~~SiAG~--------~~y~~~~ 151 (246)
T COG4221 81 RIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVER-KSGHIINLGSIAGR--------YPYPGGA 151 (246)
T ss_pred cccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhc-CCceEEEecccccc--------ccCCCCc
Confidence 8999999998754311 12345677887744 4444444443 34578877643321 1245555
Q ss_pred EEeecCChHHHHHHHHHHHHhCCC--CCCceeEEE
Q psy12825 315 VIGSGTNLDSMRFRVLLAQKLGLS--PESVHGFII 347 (488)
Q Consensus 315 ViG~gt~lds~R~~~~lA~~Lgv~--p~~V~~~V~ 347 (488)
+++- | --+.+.+++-|..+ ...|++..|
T Consensus 152 vY~A-T----K~aV~~fs~~LR~e~~g~~IRVt~I 181 (246)
T COG4221 152 VYGA-T----KAAVRAFSLGLRQELAGTGIRVTVI 181 (246)
T ss_pred cchh-h----HHHHHHHHHHHHHHhcCCCeeEEEe
Confidence 5533 2 22344444444332 355665444
No 295
>PRK08267 short chain dehydrogenase; Provisional
Probab=94.29 E-value=0.11 Score=50.76 Aligned_cols=43 Identities=23% Similarity=0.283 Sum_probs=35.7
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHH
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL 222 (488)
+++.|+|| |.+|..++..|+..|. +|+++|++.+.++....++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~ 45 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAEL 45 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHh
Confidence 57999998 9999999999999886 8999999887766554443
No 296
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=94.28 E-value=0.96 Score=43.55 Aligned_cols=47 Identities=21% Similarity=0.365 Sum_probs=38.9
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
+.++|.|+|| |.+|..++..|+..+. +|+++|.+.+..+....++..
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~ 49 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRA 49 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHh
Confidence 4578999998 9999999999999887 899999988777666555543
No 297
>PRK05876 short chain dehydrogenase; Provisional
Probab=94.24 E-value=0.78 Score=45.71 Aligned_cols=114 Identities=13% Similarity=0.216 Sum_probs=68.7
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e-------- 241 (488)
++.+.+.|+|+ |.+|..++..|+..|. +|++.|.+++.++....++.... .++. ...|. +
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~~-----~~~~~~~~Dv~d~~~v~~~~~~ 76 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAEG-----FDVHGVMCDVRHREEVTHLADE 76 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-----CeEEEEeCCCCCHHHHHHHHHH
Confidence 45567899998 9999999999999887 89999999887776666664321 1111 11221 1
Q ss_pred ---ccCCCcEEEEecccccCC---Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 ---MSEGSRIVIITAGVRSLV---GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 ---al~dADiVIitag~~~k~---G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|..... ..+. ...+..|+. ..+.+...+.+....+.+|+++.
T Consensus 77 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS 143 (275)
T PRK05876 77 AFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS 143 (275)
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 123579999999864211 1122 223444543 34445555544433455666653
No 298
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.19 E-value=0.061 Score=56.34 Aligned_cols=75 Identities=15% Similarity=0.266 Sum_probs=50.7
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh-------------------hHHHHHHHHHhhcCCCCCCCcEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE-------------------DRCKGEMLDLQHGAPFLRSPKIE 235 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~-------------------e~l~g~~~dL~~~~~~~~~~~v~ 235 (488)
.+..||.|+|+|.+|+.++..|+..|+ .+|.|+|.+. .+++..+..|.... +..++.
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n---p~v~v~ 101 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGV-GHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN---PDVKVT 101 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC---CCcEEE
Confidence 345699999999999999999999987 4899999743 23333444444332 233444
Q ss_pred EcC-C------ccccCCCcEEEEec
Q psy12825 236 SGS-D------IAMSEGSRIVIITA 253 (488)
Q Consensus 236 ~tt-d------~eal~dADiVIita 253 (488)
... . .+-++++|+||.+.
T Consensus 102 ~~~~~i~~~~~~~~~~~~DvVvd~~ 126 (355)
T PRK05597 102 VSVRRLTWSNALDELRDADVILDGS 126 (355)
T ss_pred EEEeecCHHHHHHHHhCCCEEEECC
Confidence 321 1 13478999999985
No 299
>PRK06197 short chain dehydrogenase; Provisional
Probab=94.18 E-value=0.54 Score=47.39 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=68.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e-------- 241 (488)
++.++|.|+|+ |.+|..++..|+..|. +|++++++.+.++....++.... . ..++. ...|. +
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~--~-~~~~~~~~~Dl~d~~~v~~~~~~ 88 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAAT--P-GADVTLQELDLTSLASVRAAADA 88 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--C-CCceEEEECCCCCHHHHHHHHHH
Confidence 34578999998 9999999999999886 89999998877765555554321 0 11221 12232 1
Q ss_pred ---ccCCCcEEEEecccccCCC-cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 ---MSEGSRIVIITAGVRSLVG-ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 ---al~dADiVIitag~~~k~G-~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|+||.++|....+. .+ -...+..|.. +.+.+.+.+.+.. .+.+|+++-
T Consensus 89 ~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS 152 (306)
T PRK06197 89 LRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP-GSRVVTVSS 152 (306)
T ss_pred HHhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC-CCEEEEECC
Confidence 1346899999988642211 11 1222344433 3555666665543 345666653
No 300
>PRK08251 short chain dehydrogenase; Provisional
Probab=94.14 E-value=0.83 Score=44.08 Aligned_cols=75 Identities=24% Similarity=0.325 Sum_probs=52.0
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c----------
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A---------- 241 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e---------- 241 (488)
.+++.|+|+ |.+|..++..|+..+. +|++.++++++++....++.... ...++. ...|. +
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 76 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARY---PGIKVAVAALDVNDHDQVFEVFAEFR 76 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhC---CCceEEEEEcCCCCHHHHHHHHHHHH
Confidence 357899998 9999999999998885 89999999887776666654321 111221 11222 1
Q ss_pred -ccCCCcEEEEecccc
Q psy12825 242 -MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 -al~dADiVIitag~~ 256 (488)
.+...|+||..+|..
T Consensus 77 ~~~~~id~vi~~ag~~ 92 (248)
T PRK08251 77 DELGGLDRVIVNAGIG 92 (248)
T ss_pred HHcCCCCEEEECCCcC
Confidence 234689999998864
No 301
>PLN02778 3,5-epimerase/4-reductase
Probab=94.14 E-value=0.53 Score=47.76 Aligned_cols=89 Identities=18% Similarity=0.138 Sum_probs=58.6
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
..|||.|+|+ |.+|++++..|+..|. +|++...+....+....++.+ .+.|+||-+++
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~~~~~~~v~~~l~~-------------------~~~D~ViH~Aa 66 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGRLENRASLEADIDA-------------------VKPTHVFNAAG 66 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCccCCHHHHHHHHHh-------------------cCCCEEEECCc
Confidence 4579999998 9999999999998886 666543322222222222221 26799999887
Q ss_pred cccCCC-----cchHhhHhhhHHHHHHHHHHHhccC
Q psy12825 255 VRSLVG-----ETRLQLVDRNVKIFKDLIPKIAKGS 285 (488)
Q Consensus 255 ~~~k~G-----~~r~dll~~N~~ii~ei~~~I~~~~ 285 (488)
....+. ....+.+..|+.....+++..++..
T Consensus 67 ~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~g 102 (298)
T PLN02778 67 VTGRPNVDWCESHKVETIRANVVGTLTLADVCRERG 102 (298)
T ss_pred ccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 543221 2345567788887778888877764
No 302
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.09 E-value=0.55 Score=51.84 Aligned_cols=116 Identities=12% Similarity=0.202 Sum_probs=68.6
Q ss_pred hhhHHHHHHHHHHH-HhhhCCC----CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC
Q psy12825 152 QTMARDAVSTVDRL-LSQVAPS----IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA 226 (488)
Q Consensus 152 k~la~eivlid~~~-~~e~~~~----~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~ 226 (488)
-.+++.+...++.. .++.... .....++|+|||.|.+|..+|..+..-|. +|+.||....... ..++
T Consensus 110 L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~---- 181 (526)
T PRK13581 110 LALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAFGM--KVIAYDPYISPER--AAQL---- 181 (526)
T ss_pred HHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEECCCCChhH--HHhc----
Confidence 45777776666432 1222110 23567899999999999999998876565 8999998542111 1111
Q ss_pred CCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 227 PFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 227 ~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+... ++ +.++.||+|+++..... .+..++- .+.+....|.+++||++-
T Consensus 182 ------g~~~~-~l~ell~~aDiV~l~lP~t~-----------~t~~li~--~~~l~~mk~ga~lIN~aR 231 (526)
T PRK13581 182 ------GVELV-SLDELLARADFITLHTPLTP-----------ETRGLIG--AEELAKMKPGVRIINCAR 231 (526)
T ss_pred ------CCEEE-cHHHHHhhCCEEEEccCCCh-----------HhhcCcC--HHHHhcCCCCeEEEECCC
Confidence 11222 45 56899999999863110 1111221 233444567888888874
No 303
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.06 E-value=0.39 Score=47.70 Aligned_cols=36 Identities=25% Similarity=0.480 Sum_probs=31.5
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeC
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDS 210 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di 210 (488)
..+..||+|||+|.+|+.++..|+..|+ .+|.|+|-
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~Gv-g~i~lvD~ 64 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAGV-GTLTLVDF 64 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcC
Confidence 3456799999999999999999999986 58999986
No 304
>PRK05867 short chain dehydrogenase; Provisional
Probab=94.04 E-value=0.79 Score=44.58 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=52.9
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e-------- 241 (488)
++.+++.|+|+ |.+|..++..|+..|. +|++.+++.+.++....++.+.. .++. ...| .+
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 79 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG-----GKVVPVCCDVSQHQQVTSMLDQ 79 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC-----CeEEEEEccCCCHHHHHHHHHH
Confidence 34568999998 9999999999999887 89999999888776666665321 1111 1112 11
Q ss_pred ---ccCCCcEEEEecccc
Q psy12825 242 ---MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 ---al~dADiVIitag~~ 256 (488)
.+...|++|.+++..
T Consensus 80 ~~~~~g~id~lv~~ag~~ 97 (253)
T PRK05867 80 VTAELGGIDIAVCNAGII 97 (253)
T ss_pred HHHHhCCCCEEEECCCCC
Confidence 234789999998764
No 305
>PRK06181 short chain dehydrogenase; Provisional
Probab=94.04 E-value=0.8 Score=44.70 Aligned_cols=73 Identities=21% Similarity=0.319 Sum_probs=50.1
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc---c-----------c
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI---A-----------M 242 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~---e-----------a 242 (488)
++|.|+|+ |.+|..++..|+..+. +|+++|++++..+....++.... ....+ ...|. + .
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~-~~~Dl~~~~~~~~~~~~~~~~ 75 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG---GEALV-VPTDVSDAEACERLIEAAVAR 75 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEE-EEccCCCHHHHHHHHHHHHHH
Confidence 57999999 9999999999998886 89999998877665555554321 11111 22232 1 1
Q ss_pred cCCCcEEEEecccc
Q psy12825 243 SEGSRIVIITAGVR 256 (488)
Q Consensus 243 l~dADiVIitag~~ 256 (488)
+.+.|+||.+++..
T Consensus 76 ~~~id~vi~~ag~~ 89 (263)
T PRK06181 76 FGGIDILVNNAGIT 89 (263)
T ss_pred cCCCCEEEECCCcc
Confidence 23689999998754
No 306
>PLN02780 ketoreductase/ oxidoreductase
Probab=93.99 E-value=0.62 Score=47.83 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=40.2
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
.+.+.|+|| |.+|..++..|+..|. +|+++++++++++....++..
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~ 99 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQS 99 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHH
Confidence 467889999 9999999999999987 899999999998887777764
No 307
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.99 E-value=0.28 Score=53.87 Aligned_cols=108 Identities=16% Similarity=0.214 Sum_probs=64.8
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhc-CCCCC-CCc------E-EEcCCc---
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHG-APFLR-SPK------I-ESGSDI--- 240 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~-~~~~~-~~~------v-~~ttd~--- 240 (488)
...++.||+|+|+|.+|...+..+...|- +|+.+|+++++++ .+..+... ..... ... . ..+.++
T Consensus 161 G~~pg~kVlViGaG~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle-~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 161 GKVPPAKVLVIGAGVAGLAAIGAAGSLGA--IVRAFDTRPEVAE-QVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHH-HHHHcCCeEEEeccccccccccchhhhcchhHHHH
Confidence 34568899999999999887776666665 7999999998887 44444321 00000 000 0 011221
Q ss_pred ------cccCCCcEEEEecccccCCCcchHhhHhhhHHH-HHHHHHHHhccCCCcEEEEEeCC
Q psy12825 241 ------AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKI-FKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 241 ------eal~dADiVIitag~~~k~G~~r~dll~~N~~i-i~ei~~~I~~~~p~a~vIv~TNP 296 (488)
+.++++|+||.+++.|.++-. .. .++.. +...|.+.|+.++-+
T Consensus 238 ~~~~~~~~~~gaDVVIetag~pg~~aP----------~lit~~~v---~~mkpGgvIVdvg~~ 287 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTALIPGKPAP----------KLITAEMV---ASMKPGSVIVDLAAE 287 (509)
T ss_pred HHHHHHhccCCCCEEEECCCCCcccCc----------chHHHHHH---HhcCCCCEEEEEccC
Confidence 124689999999987643211 12 13333 333477888877764
No 308
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=93.98 E-value=0.27 Score=50.72 Aligned_cols=76 Identities=17% Similarity=0.127 Sum_probs=49.7
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---c----cccCC
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---I----AMSEG 245 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~----eal~d 245 (488)
+...++|.|+|+ |.+|++++..|+..|. +|++++.+.+.......++.. .....+. ..| . +.+++
T Consensus 7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~----~~~~~~~-~~Dl~~~~~~~~~~~~ 79 (353)
T PLN02896 7 ESATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE----GDRLRLF-RADLQEEGSFDEAVKG 79 (353)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc----CCeEEEE-ECCCCCHHHHHHHHcC
Confidence 345679999998 9999999999999886 888888776544332222211 0111121 123 2 34678
Q ss_pred CcEEEEecccc
Q psy12825 246 SRIVIITAGVR 256 (488)
Q Consensus 246 ADiVIitag~~ 256 (488)
.|+||-+++..
T Consensus 80 ~d~Vih~A~~~ 90 (353)
T PLN02896 80 CDGVFHVAASM 90 (353)
T ss_pred CCEEEECCccc
Confidence 99999998754
No 309
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.92 E-value=0.25 Score=53.53 Aligned_cols=94 Identities=12% Similarity=0.074 Sum_probs=57.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcC-CccccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS-DIAMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~tt-d~eal~dADiVIita 253 (488)
...+||+|+|.|.-|.+.+..|...|. ++.+.|.++........+|.+. ....... +.+.+.++|+||.+.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~--~v~~~d~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~d~vV~Sp 77 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLP--AQALTLFCNAVEAREVGALADA------ALLVETEASAQRLAAFDVVVKSP 77 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCC--EEEEEcCCCcccchHHHHHhhc------CEEEeCCCChHHccCCCEEEECC
Confidence 346799999999999999998888887 8999997543211112234321 1122222 235588999999998
Q ss_pred ccccCCCcchHhhHhhhHHHHHHH
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDL 277 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei 277 (488)
|+|... .........+++++.++
T Consensus 78 gI~~~~-p~~~~a~~~~i~i~~~~ 100 (468)
T PRK04690 78 GISPYR-PEALAAAARGTPFIGGT 100 (468)
T ss_pred CCCCCC-HHHHHHHHcCCcEEEHH
Confidence 877432 11122234566666433
No 310
>PRK09242 tropinone reductase; Provisional
Probab=93.92 E-value=1.3 Score=43.16 Aligned_cols=77 Identities=18% Similarity=0.266 Sum_probs=54.0
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc------------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI------------ 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~------------ 240 (488)
++.+++.|+|+ |.+|..++..|+..|. +|++.+++.+.++....++.... + ..++. ...|.
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~--~-~~~~~~~~~Dl~~~~~~~~~~~~ 81 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEF--P-EREVHGLAADVSDDEDRRAILDW 81 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhC--C-CCeEEEEECCCCCHHHHHHHHHH
Confidence 34578999998 9999999999999887 89999999888777666665431 1 11221 11221
Q ss_pred --cccCCCcEEEEecccc
Q psy12825 241 --AMSEGSRIVIITAGVR 256 (488)
Q Consensus 241 --eal~dADiVIitag~~ 256 (488)
+.+...|+||.++|..
T Consensus 82 ~~~~~g~id~li~~ag~~ 99 (257)
T PRK09242 82 VEDHWDGLHILVNNAGGN 99 (257)
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 1245689999998763
No 311
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=93.92 E-value=0.85 Score=47.26 Aligned_cols=140 Identities=12% Similarity=0.129 Sum_probs=77.1
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeE-EEEeCCh-hHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNF-CLIDSNE-DRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el-~L~Di~~-e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
|++.||+|+|.|.+|...+..+....-. +| .++|+++ +++. .++ .+..+.|. +.+.++|+|++
T Consensus 1 M~kIRVgIVG~GnIGr~~a~al~~~pd~-ELVgV~dr~~~~~~~---~~~----------~v~~~~d~~e~l~~iDVViI 66 (324)
T TIGR01921 1 MSKIRAAIVGYGNLGRSVEKAIQQQPDM-ELVGVFSRRGAETLD---TET----------PVYAVADDEKHLDDVDVLIL 66 (324)
T ss_pred CCCcEEEEEeecHHHHHHHHHHHhCCCc-EEEEEEcCCcHHHHh---hcC----------CccccCCHHHhccCCCEEEE
Confidence 3468999999999999988887765322 54 4679875 3221 111 12222344 45789999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEE--EEeCCch---hHHHHHHHhcCCCCCcEEeecCChHHHH
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILL--IISNPVD---VLTYISWKLSGFPKNRVIGSGTNLDSMR 326 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vI--v~TNPvd---i~t~~~~k~sg~p~~rViG~gt~lds~R 326 (488)
+.... .. .+.... .++. ..+.+.- .-.++.+ .+-.++++..+. -+++.|-+.....
T Consensus 67 ctPs~-----th-------~~~~~~---~L~a-G~NVV~s~~~h~~~p~~~~~ld~AAk~~g~v---svi~~GwDPG~~s 127 (324)
T TIGR01921 67 CMGSA-----TD-------IPEQAP---YFAQ-FANTVDSFDNHRDIPRHRQVMDAAAKAAGNV---SVISTGWDPGMFS 127 (324)
T ss_pred cCCCc-----cC-------HHHHHH---HHHc-CCCEEECCCcccCCHHHHHHHHHHHHHcCCE---EEEECCCCcChHH
Confidence 85211 11 122222 2222 1221110 0112212 333444432232 3667777777777
Q ss_pred HHHHHHHHhCCCCCCceeEEEee
Q psy12825 327 FRVLLAQKLGLSPESVHGFIIGE 349 (488)
Q Consensus 327 ~~~~lA~~Lgv~p~~V~~~V~G~ 349 (488)
+++.+++.+ -|....-..||.
T Consensus 128 i~r~~~ea~--lp~g~~yt~wG~ 148 (324)
T TIGR01921 128 INRVYGEAV--LPKGQTYTFWGP 148 (324)
T ss_pred HHHHHHhcc--CCCCcceeccCC
Confidence 888888876 666666677884
No 312
>PRK07806 short chain dehydrogenase; Provisional
Probab=93.91 E-value=0.59 Score=45.13 Aligned_cols=113 Identities=12% Similarity=0.136 Sum_probs=62.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCCh-hHHHHHHHHHhhcCCCCCCCcEE-EcCC---ccc------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE-DRCKGEMLDLQHGAPFLRSPKIE-SGSD---IAM------ 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~-e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~ea------ 242 (488)
++.++|.|+|| |.+|.+++..|+..|. +|++++++. +.++....++.... .++. ...| .++
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~-----~~~~~~~~D~~~~~~~~~~~~ 76 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG-----GRASAVGADLTDEESVAALMD 76 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC-----CceEEEEcCCCCHHHHHHHHH
Confidence 45578999998 9999999999998886 788888764 33444444443311 1111 1122 211
Q ss_pred -----cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEe
Q psy12825 243 -----SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIIS 294 (488)
Q Consensus 243 -----l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~T 294 (488)
+.+.|+||.+++..........+.+..|..-...+.+.+.++. ..+.+|+++
T Consensus 77 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 77 TAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred HHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 2468999998865321111122233445444444455544432 234555554
No 313
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=93.88 E-value=0.64 Score=47.75 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=63.6
Q ss_pred CceEEEEec-ccchHHHHHHHHHc-CCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc---CCc----cccCCCc
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQ-GIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG---SDI----AMSEGSR 247 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~-~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t---td~----eal~dAD 247 (488)
+|||.|+|| |.+|+.++..|+.. +. +|+.+|++.+... ++... ...++... .+. +.++++|
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~~~~----~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~d 70 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTDRLG----DLVNH----PRMHFFEGDITINKEWIEYHVKKCD 70 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHHHHH----HhccC----CCeEEEeCCCCCCHHHHHHHHcCCC
Confidence 368999998 99999999999875 44 8999997654322 11110 01112111 122 2467999
Q ss_pred EEEEecccccC--CCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 248 IVIITAGVRSL--VGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 248 iVIitag~~~k--~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+||-+++.... ...........|+.-...+.+...+.. ..+|.+|.
T Consensus 71 ~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS 118 (347)
T PRK11908 71 VILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST 118 (347)
T ss_pred EEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEec
Confidence 99988754321 122233444556666667777776653 34555543
No 314
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=93.87 E-value=0.23 Score=50.40 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=51.3
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh---hHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE---DRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEG 245 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~---e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~d 245 (488)
.+.+++.|+|||.+|.++++.|+..|. .+|++++++. ++++..+.++.+.. ....+... .+. +.++.
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~-~~V~I~~R~~~~~~~a~~l~~~l~~~~---~~~~~~~~d~~~~~~~~~~~~~ 199 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGA-KEITIFNIKDDFYERAEQTAEKIKQEV---PECIVNVYDLNDTEKLKAEIAS 199 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCchHHHHHHHHHHHHhhcC---CCceeEEechhhhhHHHhhhcc
Confidence 455789999999999999999988875 4699999986 66666666564321 11112111 121 24677
Q ss_pred CcEEEEecc
Q psy12825 246 SRIVIITAG 254 (488)
Q Consensus 246 ADiVIitag 254 (488)
+|+||.+..
T Consensus 200 ~DilINaTp 208 (289)
T PRK12548 200 SDILVNATL 208 (289)
T ss_pred CCEEEEeCC
Confidence 899999864
No 315
>PRK07478 short chain dehydrogenase; Provisional
Probab=93.87 E-value=1.4 Score=42.90 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=68.6
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc----------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA---------- 241 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e---------- 241 (488)
+.+++.|+|+ |.+|..++..|+..|. +|++.+.+++.++....++.+.. ....+ ...| .+
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~-~~~D~~~~~~~~~~~~~~~ 78 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEG---GEAVA-LAGDVRDEAYAKALVALAV 78 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEE-EEcCCCCHHHHHHHHHHHH
Confidence 4568999998 9999999999999887 89999999888877666665421 11111 1122 11
Q ss_pred -ccCCCcEEEEeccccc--CC--Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 -MSEGSRIVIITAGVRS--LV--GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 -al~dADiVIitag~~~--k~--G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|... .+ ..+. ...+..|+. ..+.+.+.+.+.. .+.+|+++.
T Consensus 79 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~-~~~iv~~sS 143 (254)
T PRK07478 79 ERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARG-GGSLIFTST 143 (254)
T ss_pred HhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEec
Confidence 1346899999988632 11 1122 233455553 4445555554432 344555554
No 316
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=93.86 E-value=0.98 Score=43.36 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=38.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
++.++|.|+|| |.+|..++..|+.+|. +|++++++.+.+.....++..
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~ 52 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVEA 52 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh
Confidence 34578999998 9999999999999886 899999988766655555543
No 317
>PRK05650 short chain dehydrogenase; Provisional
Probab=93.85 E-value=0.89 Score=44.74 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=65.9
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc-----------c
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA-----------M 242 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e-----------a 242 (488)
++|.|+|+ |.+|..++..|+..|. +|++.|++.+.++....++.... ....+ ...| ++ .
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~-~~~D~~~~~~~~~~~~~i~~~ 74 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAG---GDGFY-QRCDVRDYSQLTALAQACEEK 74 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEE-EEccCCCHHHHHHHHHHHHHH
Confidence 47899999 9999999999999887 89999998887776666665421 11111 1122 11 1
Q ss_pred cCCCcEEEEecccccCC---CcchH---hhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 243 SEGSRIVIITAGVRSLV---GETRL---QLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 243 l~dADiVIitag~~~k~---G~~r~---dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+...|+||.++|..... ..+.. ..+..|.. +.+.+.+.+.+... +.+|+++
T Consensus 75 ~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~vs 135 (270)
T PRK05650 75 WGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKS-GRIVNIA 135 (270)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCC-CEEEEEC
Confidence 24689999998754321 11111 23445533 34445555555433 4455554
No 318
>PRK08265 short chain dehydrogenase; Provisional
Probab=93.82 E-value=1.1 Score=43.87 Aligned_cols=46 Identities=17% Similarity=0.308 Sum_probs=37.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHH
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL 222 (488)
++.+++.|+|+ |.+|..++..|+..|. +|++.|++++.++....++
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~ 50 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASL 50 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh
Confidence 45578999998 9999999999999887 8999999887666544443
No 319
>PRK07890 short chain dehydrogenase; Provisional
Probab=93.82 E-value=0.52 Score=45.73 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=39.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
++.++|.|+|+ |.+|..++..|+.+|. +|+++|++++.++....++.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~ 50 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEID 50 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHH
Confidence 34578999998 9999999999999887 89999998887766666664
No 320
>PRK06139 short chain dehydrogenase; Provisional
Probab=93.81 E-value=0.87 Score=47.02 Aligned_cols=77 Identities=13% Similarity=0.183 Sum_probs=53.9
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc----------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA---------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e---------- 241 (488)
++.++|.|+|| |.+|..++..|+..|. +|++++++++.++....++.... ....+... +|.+
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g---~~~~~~~~Dv~d~~~v~~~~~~~~ 79 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALG---AEVLVVPTDVTDADQVKALATQAA 79 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCCCHHHHHHHHHHHH
Confidence 34568999999 9999999999999987 89999999988887666665421 11111111 1221
Q ss_pred -ccCCCcEEEEecccc
Q psy12825 242 -MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 -al~dADiVIitag~~ 256 (488)
.+...|++|.++|..
T Consensus 80 ~~~g~iD~lVnnAG~~ 95 (330)
T PRK06139 80 SFGGRIDVWVNNVGVG 95 (330)
T ss_pred HhcCCCCEEEECCCcC
Confidence 124689999999864
No 321
>PRK05875 short chain dehydrogenase; Provisional
Probab=93.77 E-value=1.3 Score=43.59 Aligned_cols=47 Identities=15% Similarity=0.337 Sum_probs=39.1
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
++.++|.|+|+ |.+|..++..|+..|. +|++++.+.+.++....++.
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~ 52 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIE 52 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHH
Confidence 45679999998 9999999999999887 89999998877766555554
No 322
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=93.77 E-value=0.17 Score=56.12 Aligned_cols=127 Identities=18% Similarity=0.197 Sum_probs=75.1
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-----cccCCCcEEE
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-----AMSEGSRIVI 250 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-----eal~dADiVI 250 (488)
.+|.|+|+|.+|+.++..|...+. +++++|.|+++.+.. .+.. ..+... +|. ..+++||.|+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~--~vvvId~d~~~~~~~-~~~g--------~~~i~GD~~~~~~L~~a~i~~a~~vi 486 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI--PLVVIETSRTRVDEL-RERG--------IRAVLGNAANEEIMQLAHLDCARWLL 486 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC--CEEEEECCHHHHHHH-HHCC--------CeEEEcCCCCHHHHHhcCccccCEEE
Confidence 689999999999999999988887 899999999877643 2221 112211 232 2478999888
Q ss_pred EecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHH
Q psy12825 251 ITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVL 330 (488)
Q Consensus 251 itag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~ 330 (488)
++.+. . .+|..+ ...+++.+|+..++.-.+-.+ ..+.++ ..|. +.++- +..-.-+.
T Consensus 487 v~~~~--------~---~~~~~i----v~~~~~~~~~~~iiar~~~~~-~~~~l~-~~Ga--d~vv~-----p~~~~a~~ 542 (558)
T PRK10669 487 LTIPN--------G---YEAGEI----VASAREKRPDIEIIARAHYDD-EVAYIT-ERGA--NQVVM-----GEREIART 542 (558)
T ss_pred EEcCC--------h---HHHHHH----HHHHHHHCCCCeEEEEECCHH-HHHHHH-HcCC--CEEEC-----hHHHHHHH
Confidence 87421 1 133333 333455567776665554222 223333 3454 35551 22234555
Q ss_pred HHHHhCCCC
Q psy12825 331 LAQKLGLSP 339 (488)
Q Consensus 331 lA~~Lgv~p 339 (488)
+++.+..+.
T Consensus 543 i~~~l~~~~ 551 (558)
T PRK10669 543 MLELLETPP 551 (558)
T ss_pred HHHHhcCCC
Confidence 666665443
No 323
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=93.77 E-value=0.36 Score=50.05 Aligned_cols=137 Identities=16% Similarity=0.222 Sum_probs=82.3
Q ss_pred CCCcEEEEecchhH-HHHH---HHHHhhhhHHHHHHHHHH-HHhhhCCC--------CCCCCceEEEEecccchHHHHHH
Q psy12825 129 PDQKITVVGAGQVG-MACT---YSILTQTMARDAVSTVDR-LLSQVAPS--------IESPDQKITVVGAGQVGMACTYS 195 (488)
Q Consensus 129 ~~~ki~vvg~g~vg-~~~a---~~~~~k~la~eivlid~~-~~~e~~~~--------~~~~~~KIaIIGAG~vG~~ia~~ 195 (488)
+...|+|.-+..+. -+.| ++++ -.+.+.+...++. +.+++... .....+++.|||.|.+|..+|..
T Consensus 86 ~~~gI~Vtnvp~~~t~sVAe~~~aLi-La~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r 164 (324)
T COG1052 86 KERGITVTNVPGYSTEAVAEHAVALI-LALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARR 164 (324)
T ss_pred HHCCcEEEeCCCCCchHHHHHHHHHH-HHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHH
Confidence 34567777666433 2333 4433 3577777777754 33332111 34568999999999999999887
Q ss_pred HHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHH
Q psy12825 196 ILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIF 274 (488)
Q Consensus 196 La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii 274 (488)
+. ++.-+|+.||+.+. .+ ...++ ...+.. + +-++.||+|++.+... .+|-.++
T Consensus 165 ~~--~Fgm~v~y~~~~~~-~~-~~~~~----------~~~y~~-l~ell~~sDii~l~~Plt-----------~~T~hLi 218 (324)
T COG1052 165 LK--GFGMKVLYYDRSPN-PE-AEKEL----------GARYVD-LDELLAESDIISLHCPLT-----------PETRHLI 218 (324)
T ss_pred Hh--cCCCEEEEECCCCC-hH-HHhhc----------Cceecc-HHHHHHhCCEEEEeCCCC-----------hHHhhhc
Confidence 76 66669999999764 21 11111 112222 4 5699999999986211 1122222
Q ss_pred HHHHHHHhccCCCcEEEEEe
Q psy12825 275 KDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 275 ~ei~~~I~~~~p~a~vIv~T 294 (488)
- .+.++...|.+++||.+
T Consensus 219 n--~~~l~~mk~ga~lVNta 236 (324)
T COG1052 219 N--AEELAKMKPGAILVNTA 236 (324)
T ss_pred C--HHHHHhCCCCeEEEECC
Confidence 2 33455556788888886
No 324
>PRK12828 short chain dehydrogenase; Provisional
Probab=93.69 E-value=0.21 Score=47.63 Aligned_cols=47 Identities=15% Similarity=0.271 Sum_probs=37.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
.+.++|.|+|+ |.+|..++..|+.+|. +|+++|++++.......++.
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~ 52 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGAAPLSQTLPGVP 52 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCChHhHHHHHHHHh
Confidence 34678999999 9999999999999886 79999998876655444443
No 325
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=93.69 E-value=0.17 Score=51.08 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=69.3
Q ss_pred EEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCC-CCCCcEEEcCCc-cccCCCcEEEEecccccC
Q psy12825 182 VVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF-LRSPKIESGSDI-AMSEGSRIVIITAGVRSL 258 (488)
Q Consensus 182 IIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~-~~~~~v~~ttd~-eal~dADiVIitag~~~k 258 (488)
|+|+ |.+|++++..|+..+...+|+.+|+.+.... ..++.+.... .....+.-..+. ++++++|+||-++.....
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~--~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~ 79 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKF--LKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPP 79 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEccccccccc--chhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCccccc
Confidence 7887 9999999999999985568999998664221 1122211000 000111111122 589999999999864333
Q ss_pred CC-cchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 259 VG-ETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 259 ~G-~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
.+ .....+..-|+.--+.+.+...+..- .-+|+|.-.+
T Consensus 80 ~~~~~~~~~~~vNV~GT~nvl~aa~~~~V--krlVytSS~~ 118 (280)
T PF01073_consen 80 WGDYPPEEYYKVNVDGTRNVLEAARKAGV--KRLVYTSSIS 118 (280)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHcCC--CEEEEEcCcc
Confidence 33 34566778888888888887776543 3455554433
No 326
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.68 E-value=1.2 Score=42.53 Aligned_cols=75 Identities=19% Similarity=0.283 Sum_probs=49.7
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEE-eCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc---c---------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLI-DSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI---A--------- 241 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~-Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~---e--------- 241 (488)
.+++|.|+|+ |.+|..++..|+..+. ++++. +.+.+.++.....+.... ....+ ...|. +
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~~---~~~~~-~~~D~~~~~~~~~~~~~~ 77 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINEEAAQELLEEIKEEG---GDAIA-VKADVSSEEDVENLVEQI 77 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC---CeEEE-EECCCCCHHHHHHHHHHH
Confidence 4568999998 9999999999988876 77787 998876665544444311 11111 12232 1
Q ss_pred --ccCCCcEEEEecccc
Q psy12825 242 --MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 --al~dADiVIitag~~ 256 (488)
.+.+.|+||..++..
T Consensus 78 ~~~~~~id~vi~~ag~~ 94 (247)
T PRK05565 78 VEKFGKIDILVNNAGIS 94 (247)
T ss_pred HHHhCCCCEEEECCCcC
Confidence 123689999998754
No 327
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=93.67 E-value=0.36 Score=50.88 Aligned_cols=37 Identities=27% Similarity=0.563 Sum_probs=31.6
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN 211 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~ 211 (488)
..+..||.|||+|.+|+.++..|+..|+ .+|+|+|.|
T Consensus 38 ~l~~~~VliiG~GglG~~v~~~La~~Gv-g~i~ivD~D 74 (370)
T PRK05600 38 RLHNARVLVIGAGGLGCPAMQSLASAGV-GTITLIDDD 74 (370)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCC
Confidence 3445699999999999999999999886 489999874
No 328
>PLN02583 cinnamoyl-CoA reductase
Probab=93.63 E-value=1.2 Score=44.95 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=61.2
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChh--HHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCc
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNED--RCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSR 247 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e--~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dAD 247 (488)
.++|.|+|| |.+|.+++..|+.+|. +|++.+++.+ .......++... .....+... +|. +++.++|
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~---~~~~~~~~~Dl~d~~~~~~~l~~~d 80 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCE---EERLKVFDVDPLDYHSILDALKGCS 80 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccC---CCceEEEEecCCCHHHHHHHHcCCC
Confidence 468999998 9999999999999887 8888876432 221112222110 011111111 122 4688999
Q ss_pred EEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhcc
Q psy12825 248 IVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG 284 (488)
Q Consensus 248 iVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~ 284 (488)
.|+-.++.+........+++..|+.-...+.+.+.+.
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~ 117 (297)
T PLN02583 81 GLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQT 117 (297)
T ss_pred EEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 9886553322111123456777888777777777665
No 329
>PRK06914 short chain dehydrogenase; Provisional
Probab=93.60 E-value=0.67 Score=45.74 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=50.5
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---ccc--------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IAM-------- 242 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~ea-------- 242 (488)
+.++|.|+|| |.+|..++..|+.+|. +|++++.+++.++....++.+.. ...++. ...| ++.
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~d~~~~~~~~~~~ 76 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNPEKQENLLSQATQLN---LQQNIKVQQLDVTDQNSIHNFQLVL 76 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhcC---CCCceeEEecCCCCHHHHHHHHHHH
Confidence 3457899998 9999999999998886 89999998877765544443321 011221 1122 221
Q ss_pred --cCCCcEEEEecccc
Q psy12825 243 --SEGSRIVIITAGVR 256 (488)
Q Consensus 243 --l~dADiVIitag~~ 256 (488)
+...|+||.+++..
T Consensus 77 ~~~~~id~vv~~ag~~ 92 (280)
T PRK06914 77 KEIGRIDLLVNNAGYA 92 (280)
T ss_pred HhcCCeeEEEECCccc
Confidence 24579999998764
No 330
>PRK06196 oxidoreductase; Provisional
Probab=93.59 E-value=0.98 Score=45.84 Aligned_cols=112 Identities=16% Similarity=0.207 Sum_probs=67.2
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-----------cc
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-----------AM 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-----------ea 242 (488)
++.++|.|+|| |.+|..++..|+..|. +|++.++++++++....++..... ....+ +|. +.
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~~--~~~Dl---~d~~~v~~~~~~~~~~ 96 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVEV--VMLDL---ADLESVRAFAERFLDS 96 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCeE--EEccC---CCHHHHHHHHHHHHhc
Confidence 45578999999 9999999999999887 899999998877655544432110 00111 121 12
Q ss_pred cCCCcEEEEecccccCCCc---c-hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 243 SEGSRIVIITAGVRSLVGE---T-RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~---~-r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+.+.|++|..+|....+.. + -...+..|.. +.+.+.+.+.+.. .+.+|++|
T Consensus 97 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vS 155 (315)
T PRK06196 97 GRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALS 155 (315)
T ss_pred CCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEEC
Confidence 3578999999986432211 1 1222344433 4555566665543 34566665
No 331
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=93.58 E-value=0.42 Score=49.56 Aligned_cols=117 Identities=14% Similarity=0.189 Sum_probs=69.7
Q ss_pred hhhHHHHHHHHHHH-HhhhCCC----CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC
Q psy12825 152 QTMARDAVSTVDRL-LSQVAPS----IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA 226 (488)
Q Consensus 152 k~la~eivlid~~~-~~e~~~~----~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~ 226 (488)
-.+++.+...+..+ .++-... .+...++|.|||.|.+|+.++..+..-|. +|..||+...+-.. -.
T Consensus 112 L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm--~v~~~d~~~~~~~~----~~--- 182 (324)
T COG0111 112 LALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGM--KVIGYDPYSPRERA----GV--- 182 (324)
T ss_pred HHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhCCC--eEEEECCCCchhhh----cc---
Confidence 45778888777443 2222110 34457899999999999999888766676 99999993321111 00
Q ss_pred CCCCCCcEEEcCCcc-ccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 227 PFLRSPKIESGSDIA-MSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 227 ~~~~~~~v~~ttd~e-al~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
..+....+++ -|+.||||++..... + ++..++- ++.+.+..|.+++||++-
T Consensus 183 -----~~~~~~~~Ld~lL~~sDiv~lh~PlT--~---------eT~g~i~--~~~~a~MK~gailIN~aR 234 (324)
T COG0111 183 -----DGVVGVDSLDELLAEADILTLHLPLT--P---------ETRGLIN--AEELAKMKPGAILINAAR 234 (324)
T ss_pred -----ccceecccHHHHHhhCCEEEEcCCCC--c---------chhcccC--HHHHhhCCCCeEEEECCC
Confidence 0112223454 489999999985211 1 1111221 223344447888898873
No 332
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.58 E-value=1.4 Score=42.20 Aligned_cols=75 Identities=20% Similarity=0.299 Sum_probs=52.0
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e-------- 241 (488)
++.+++.|+|+ |.+|..++..|+..|. +|++++++.+.++....++... ..++. ...| ++
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~ 77 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAY-----GVKVVIATADVSDYEEVTAAIEQ 77 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh-----CCeEEEEECCCCCHHHHHHHHHH
Confidence 34568999998 8999999999998887 8999999887766555555421 11222 1222 11
Q ss_pred ---ccCCCcEEEEecccc
Q psy12825 242 ---MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 ---al~dADiVIitag~~ 256 (488)
.+.+.|+||.+++..
T Consensus 78 ~~~~~~~id~vi~~ag~~ 95 (239)
T PRK07666 78 LKNELGSIDILINNAGIS 95 (239)
T ss_pred HHHHcCCccEEEEcCccc
Confidence 134799999998764
No 333
>PRK06172 short chain dehydrogenase; Provisional
Probab=93.57 E-value=0.35 Score=46.97 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=39.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
++.++|.|+|| |.+|..++..|+..|. +|++++.+++.++....++..
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~ 53 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALIRE 53 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHh
Confidence 35678999999 9999999999998886 899999998877766666643
No 334
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.51 E-value=0.22 Score=48.82 Aligned_cols=66 Identities=14% Similarity=0.336 Sum_probs=43.4
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeC--ChhHHHHHHHHHhhcCCCCCCCcEEE-cCCc--cccCCCcEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDS--NEDRCKGEMLDLQHGAPFLRSPKIES-GSDI--AMSEGSRIV 249 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di--~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd~--eal~dADiV 249 (488)
.+.++|.|||+|.++..=+..|+..+- +|+++-. +++ +. ++... .++.. ..+| ++++++++|
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA--~VtVVap~i~~e-l~----~l~~~------~~i~~~~r~~~~~dl~g~~LV 89 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGC--YVYILSKKFSKE-FL----DLKKY------GNLKLIKGNYDKEFIKDKHLI 89 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEcCCCCHH-HH----HHHhC------CCEEEEeCCCChHHhCCCcEE
Confidence 356799999999999877777877775 7888854 333 22 22211 12222 2233 579999999
Q ss_pred EEec
Q psy12825 250 IITA 253 (488)
Q Consensus 250 Iita 253 (488)
|.+.
T Consensus 90 iaAT 93 (223)
T PRK05562 90 VIAT 93 (223)
T ss_pred EECC
Confidence 9985
No 335
>PRK07677 short chain dehydrogenase; Provisional
Probab=93.51 E-value=1.5 Score=42.57 Aligned_cols=110 Identities=8% Similarity=0.068 Sum_probs=66.6
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcC---Ccc-----------
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGS---DIA----------- 241 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~tt---d~e----------- 241 (488)
+++.|+|+ |.+|..++..|+..|. .|+++|.+.+.++....++.... .++. ... |.+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP-----GQVLTVQMDVRNPEDVQKMVEQIDE 74 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 57889998 8899999999998887 89999999887776665554321 1111 111 211
Q ss_pred ccCCCcEEEEecccccC-C--Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 242 MSEGSRIVIITAGVRSL-V--GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 242 al~dADiVIitag~~~k-~--G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
.+...|+||.++|.... + ..+. ...+..|+. +.+.+.+.+.+..+.+.++++|
T Consensus 75 ~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~is 137 (252)
T PRK07677 75 KFGRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMV 137 (252)
T ss_pred HhCCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEc
Confidence 13467999999875321 1 1222 223444443 4455555544434446677766
No 336
>KOG0409|consensus
Probab=93.51 E-value=0.22 Score=50.77 Aligned_cols=68 Identities=22% Similarity=0.482 Sum_probs=52.0
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAG 254 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag 254 (488)
+..+|..||.|.||.+++.+|+..|+ .|+.||++.++.+ ++.+.- .++ ...+ |-.+++|+||...+
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~--kVtV~dr~~~k~~----~f~~~G-----a~v--~~sPaeVae~sDvvitmv~ 100 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGY--KVTVYDRTKDKCK----EFQEAG-----ARV--ANSPAEVAEDSDVVITMVP 100 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCC--EEEEEeCcHHHHH----HHHHhc-----hhh--hCCHHHHHhhcCEEEEEcC
Confidence 46799999999999999999999998 9999999887554 344431 122 2344 45789999999876
Q ss_pred cc
Q psy12825 255 VR 256 (488)
Q Consensus 255 ~~ 256 (488)
.+
T Consensus 101 ~~ 102 (327)
T KOG0409|consen 101 NP 102 (327)
T ss_pred Ch
Confidence 44
No 337
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=93.49 E-value=1.1 Score=43.47 Aligned_cols=48 Identities=15% Similarity=0.293 Sum_probs=39.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
++.+++.|+|| |.+|..++..|+..|. +|++.|++++.++....++.+
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~~~~~~~~~~l~~ 55 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGA--EIIINDITAERAELAVAKLRQ 55 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHh
Confidence 34578999998 9999999999998886 899999998877766666654
No 338
>PRK06500 short chain dehydrogenase; Provisional
Probab=93.45 E-value=1.4 Score=42.47 Aligned_cols=43 Identities=9% Similarity=0.263 Sum_probs=35.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHH
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEM 219 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~ 219 (488)
++.++|.|+|| |.+|..++..|+..|. +|++++++++.++...
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~ 47 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAAR 47 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHH
Confidence 34578999999 9999999999999886 8999999876665433
No 339
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=93.44 E-value=0.35 Score=51.69 Aligned_cols=102 Identities=20% Similarity=0.221 Sum_probs=61.9
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCc
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSR 247 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dAD 247 (488)
.+.++|.|+|| |.+|..++..|+..|. +++++|.+++.++.. +.+.. ........ +|. +.+.+.|
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~l~~~---~~~~~---~~v~~v~~Dvsd~~~v~~~l~~ID 247 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDKITLE---INGED---LPVKTLHWQVGQEAALAELLEKVD 247 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHH---HhhcC---CCeEEEEeeCCCHHHHHHHhCCCC
Confidence 35678999999 9999999999998886 899999987655322 21110 01111111 222 2467899
Q ss_pred EEEEecccccCCCcch---HhhHhhhHH----HHHHHHHHHhcc
Q psy12825 248 IVIITAGVRSLVGETR---LQLVDRNVK----IFKDLIPKIAKG 284 (488)
Q Consensus 248 iVIitag~~~k~G~~r---~dll~~N~~----ii~ei~~~I~~~ 284 (488)
++|..+|.......+. .+.+..|.. +.+.+.+.+++.
T Consensus 248 iLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~ 291 (406)
T PRK07424 248 ILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTN 291 (406)
T ss_pred EEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999987643322222 233455544 455555555543
No 340
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=93.43 E-value=0.28 Score=49.67 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=43.7
Q ss_pred CCceEEEEecccchHHHHHHHHHc-CCCCeEEEEeCChhHHHHHHHHHhh-cCCCCCCCcEEEcCCc----cccCCCcEE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQ-GIYSNFCLIDSNEDRCKGEMLDLQH-GAPFLRSPKIESGSDI----AMSEGSRIV 249 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~-~l~~el~L~Di~~e~l~g~~~dL~~-~~~~~~~~~v~~ttd~----eal~dADiV 249 (488)
.+.||+.||+|++-.+. ..|+.. +....++-+|++++..+- ...+-. ........++. +.|. .++++.|+|
T Consensus 120 ~p~rVaFIGSGPLPlT~-i~la~~~~~~~~v~~iD~d~~A~~~-a~~lv~~~~~L~~~m~f~-~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTS-IVLAKQHGPGARVHNIDIDPEANEL-ARRLVASDLGLSKRMSFI-TADVLDVTYDLKEYDVV 196 (276)
T ss_dssp ---EEEEE---SS-HHH-HHHH--HTT--EEEEEESSHHHHHH-HHHHHH---HH-SSEEEE-ES-GGGG-GG----SEE
T ss_pred ccceEEEEcCCCcchHH-HHHHHHhCCCCeEEEEeCCHHHHHH-HHHHHhhcccccCCeEEE-ecchhccccccccCCEE
Confidence 45799999999997653 333322 334478899999986653 333332 11111122333 3342 468899999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEE
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCIL 290 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~v 290 (488)
++++-+ |++ .+-+.++...+.++. |++.+
T Consensus 197 ~lAalV----g~~--------~e~K~~Il~~l~~~m~~ga~l 226 (276)
T PF03059_consen 197 FLAALV----GMD--------AEPKEEILEHLAKHMAPGARL 226 (276)
T ss_dssp EE-TT-----S------------SHHHHHHHHHHHS-TTSEE
T ss_pred EEhhhc----ccc--------cchHHHHHHHHHhhCCCCcEE
Confidence 999732 221 223455666666654 45543
No 341
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=93.41 E-value=0.13 Score=44.35 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=44.9
Q ss_pred ceEEEEecccchHHHHHHHHHcC-CCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccC--CCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQG-IYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSE--GSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~-l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~--dADiVIita 253 (488)
+||+|||+|.+|......+.... ...-+.++|.++++.+....... .. ..+|++ .++ +.|+|+++.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~--------~~--~~~~~~~ll~~~~~D~V~I~t 70 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYG--------IP--VYTDLEELLADEDVDAVIIAT 70 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT--------SE--EESSHHHHHHHTTESEEEEES
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhc--------cc--chhHHHHHHHhhcCCEEEEec
Confidence 48999999999998877777663 23234589999987765422221 11 345664 343 899999996
No 342
>PRK05872 short chain dehydrogenase; Provisional
Probab=93.40 E-value=1.3 Score=44.53 Aligned_cols=75 Identities=20% Similarity=0.320 Sum_probs=53.2
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcC---Ccc-------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGS---DIA------- 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~tt---d~e------- 241 (488)
..+.++|.|+|+ |.+|..++..|+..|. +|++.+++++.++....++... .++. ... |.+
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l~~~------~~~~~~~~Dv~d~~~v~~~~~ 77 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAELGGD------DRVLTVVADVTDLAAMQAAAE 77 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcCC------CcEEEEEecCCCHHHHHHHHH
Confidence 345678999998 9999999999999886 8999999988777665555321 1111 111 221
Q ss_pred ----ccCCCcEEEEecccc
Q psy12825 242 ----MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 ----al~dADiVIitag~~ 256 (488)
.+...|+||.++|..
T Consensus 78 ~~~~~~g~id~vI~nAG~~ 96 (296)
T PRK05872 78 EAVERFGGIDVVVANAGIA 96 (296)
T ss_pred HHHHHcCCCCEEEECCCcC
Confidence 235689999999864
No 343
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=93.40 E-value=0.37 Score=46.63 Aligned_cols=111 Identities=16% Similarity=0.190 Sum_probs=65.9
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---ccc-----------
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IAM----------- 242 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~ea----------- 242 (488)
+++.|+|+ |.+|..++..|+..|. +|++++.+++.++....++.... ....+ ...| .++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~---~~~~~-~~~Dl~~~~~i~~~~~~~~~~ 74 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAG---GKAVA-YKLDVSDKDQVFSAIDQAAEK 74 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CeEEE-EEcCCCCHHHHHHHHHHHHHH
Confidence 36889998 9999999999998886 89999998777766555554321 01111 1122 211
Q ss_pred cCCCcEEEEecccccC-C--CcchH---hhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 243 SEGSRIVIITAGVRSL-V--GETRL---QLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 243 l~dADiVIitag~~~k-~--G~~r~---dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+...|+||.+++.... + ..+.. ..+..|+. +.+.+.+.+.+......+++++
T Consensus 75 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s 136 (254)
T TIGR02415 75 FGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA 136 (254)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 2357999999876321 1 22222 22444443 3345555565554445566554
No 344
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=93.31 E-value=1.3 Score=42.83 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=40.9
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
..+.++|.|+|+ |.+|..++..|+..|. +|+++|++.+.++....++.+
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~ 58 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEA 58 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHh
Confidence 446678999998 9999999999998876 899999998877766666654
No 345
>PRK07024 short chain dehydrogenase; Provisional
Probab=93.29 E-value=0.51 Score=46.12 Aligned_cols=44 Identities=23% Similarity=0.290 Sum_probs=36.5
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHH
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL 222 (488)
+++|.|+|+ |.+|..++..|+..|. +|+++|++.+.++....++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~ 46 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA--TLGLVARRTDALQAFAARL 46 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhc
Confidence 368999998 9999999999999886 8999999988776554444
No 346
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=93.29 E-value=0.53 Score=50.60 Aligned_cols=69 Identities=23% Similarity=0.349 Sum_probs=47.5
Q ss_pred eEEEEecccchHH-HHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccccc
Q psy12825 179 KITVVGAGQVGMA-CTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRS 257 (488)
Q Consensus 179 KIaIIGAG~vG~~-ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~~ 257 (488)
+|.+||.|..|.+ +|..|...|. +|...|.+... ...+|+.. ...+...-+.+.+.++|+||.+.+++.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~--~v~~~D~~~~~---~~~~l~~~-----gi~~~~g~~~~~~~~~d~vV~spgi~~ 70 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGY--QVSGSDIAENA---TTKRLEAL-----GIPIYIGHSAENLDDADVVVVSAAIKD 70 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCC--eEEEECCCcch---HHHHHHHC-----cCEEeCCCCHHHCCCCCEEEECCCCCC
Confidence 5889999999998 8888888887 89999986542 22334331 112222223355788999999988764
No 347
>PRK07831 short chain dehydrogenase; Provisional
Probab=93.29 E-value=1.9 Score=42.15 Aligned_cols=79 Identities=20% Similarity=0.203 Sum_probs=53.8
Q ss_pred CCCCCceEEEEec-c-cchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c-----
Q psy12825 173 IESPDQKITVVGA-G-QVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A----- 241 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G-~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e----- 241 (488)
+.++.+++.|+|+ | .+|..++..|+..|. +|++.|.+.++++....++.... . ..++. ...|. +
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~Dl~~~~~~~~~ 87 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHERRLGETADELAAEL--G-LGRVEAVVCDVTSEAQVDAL 87 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhc--C-CceEEEEEccCCCHHHHHHH
Confidence 4455688999998 6 699999999998887 79999998887776666665421 1 11121 12232 1
Q ss_pred ------ccCCCcEEEEecccc
Q psy12825 242 ------MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 ------al~dADiVIitag~~ 256 (488)
.+...|++|.++|..
T Consensus 88 ~~~~~~~~g~id~li~~ag~~ 108 (262)
T PRK07831 88 IDAAVERLGRLDVLVNNAGLG 108 (262)
T ss_pred HHHHHHHcCCCCEEEECCCCC
Confidence 124679999999853
No 348
>PRK07454 short chain dehydrogenase; Provisional
Probab=93.28 E-value=1.5 Score=42.16 Aligned_cols=76 Identities=17% Similarity=0.224 Sum_probs=50.8
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc-----------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA----------- 241 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e----------- 241 (488)
+++++.|+|+ |.+|..++..|+.+|. .|++++++++.++....++.... ....+... +|++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW--DLALVARSQDALEALAAELRSTG---VKAAAYSIDLSNPEAIAPGIAELLE 79 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhCC---CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4568999998 9999999999999887 89999998876665555444311 11111111 1221
Q ss_pred ccCCCcEEEEecccc
Q psy12825 242 MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 al~dADiVIitag~~ 256 (488)
.+...|+||.++|..
T Consensus 80 ~~~~id~lv~~ag~~ 94 (241)
T PRK07454 80 QFGCPDVLINNAGMA 94 (241)
T ss_pred HcCCCCEEEECCCcc
Confidence 124589999998764
No 349
>PRK08703 short chain dehydrogenase; Provisional
Probab=93.28 E-value=2.2 Score=40.95 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=39.9
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
.++.++|.|+|+ |.+|..++..|+..|. +|++++++++.++....++.
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~ 51 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQKKLEKVYDAIV 51 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCChHHHHHHHHHHH
Confidence 355678999998 9999999999998887 89999999987776655554
No 350
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.28 E-value=0.025 Score=58.35 Aligned_cols=32 Identities=34% Similarity=0.557 Sum_probs=29.3
Q ss_pred CCcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 130 DQKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 130 ~~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
+.||+|||+|.||.++||.+..+++ .|++++|
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~-~~l~L~D 36 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNL-GDVVLYD 36 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-CeEEEEE
Confidence 4599999999999999999999998 5699988
No 351
>PRK05855 short chain dehydrogenase; Validated
Probab=93.27 E-value=0.96 Score=49.27 Aligned_cols=117 Identities=12% Similarity=0.121 Sum_probs=72.6
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc-------
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA------- 241 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e------- 241 (488)
..++.+++.|+|| |.+|..++..|+..|. +|++.+++.+.++....++.... ....+ ...| .+
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~-~~~Dv~~~~~~~~~~~ 384 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAG---AVAHA-YRVDVSDADAMEAFAE 384 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CeEEE-EEcCCCCHHHHHHHHH
Confidence 4456678999999 9999999999999887 79999999888776666664321 11111 1122 21
Q ss_pred ----ccCCCcEEEEecccccCC---CcchH---hhHhhhH----HHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 ----MSEGSRIVIITAGVRSLV---GETRL---QLVDRNV----KIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 ----al~dADiVIitag~~~k~---G~~r~---dll~~N~----~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|.++|..... ..+.. ..+..|+ ...+.+...+.+....+.||+++-
T Consensus 385 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS 452 (582)
T PRK05855 385 WVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVAS 452 (582)
T ss_pred HHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 123579999999875321 11222 2234453 344555555655554566766654
No 352
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=93.27 E-value=0.56 Score=44.94 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=36.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHH
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLD 221 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~d 221 (488)
++.+++.|+|+ |.+|..++..|+.++. .|.+.+.+.+.++....+
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~ 49 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEALAAE 49 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHH
Confidence 45678999998 9999999999999886 788888888777654433
No 353
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=93.26 E-value=0.16 Score=53.67 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=44.8
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~dADiVIi 251 (488)
.....++|+|||.|.||..++..+..-|. +|+.+|......+ . ... ..+++ .+++||+|++
T Consensus 112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~--~V~~~Dp~~~~~~-------~--------~~~-~~~l~ell~~aDiV~l 173 (381)
T PRK00257 112 VDLAERTYGVVGAGHVGGRLVRVLRGLGW--KVLVCDPPRQEAE-------G--------DGD-FVSLERILEECDVISL 173 (381)
T ss_pred CCcCcCEEEEECCCHHHHHHHHHHHHCCC--EEEEECCcccccc-------c--------Ccc-ccCHHHHHhhCCEEEE
Confidence 34567899999999999999998876666 8999997432110 0 001 12454 4789999999
Q ss_pred ec
Q psy12825 252 TA 253 (488)
Q Consensus 252 ta 253 (488)
..
T Consensus 174 h~ 175 (381)
T PRK00257 174 HT 175 (381)
T ss_pred eC
Confidence 86
No 354
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=93.26 E-value=0.15 Score=47.81 Aligned_cols=58 Identities=21% Similarity=0.347 Sum_probs=43.8
Q ss_pred CCCCCceEEEEecccc-hHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQV-GMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~v-G~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIi 251 (488)
.....+||.|||+|.+ |..++..|...+. +|.+++.+.+.+ ++.+++||+||.
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~--~V~v~~r~~~~l------------------------~~~l~~aDiVIs 93 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNA--TVTVCHSKTKNL------------------------KEHTKQADIVIV 93 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCC--EEEEEECCchhH------------------------HHHHhhCCEEEE
Confidence 4567889999999975 8888999988876 688998753111 135678999999
Q ss_pred ecccc
Q psy12825 252 TAGVR 256 (488)
Q Consensus 252 tag~~ 256 (488)
+.+.+
T Consensus 94 at~~~ 98 (168)
T cd01080 94 AVGKP 98 (168)
T ss_pred cCCCC
Confidence 87654
No 355
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=93.25 E-value=0.83 Score=50.42 Aligned_cols=117 Identities=14% Similarity=0.167 Sum_probs=69.0
Q ss_pred hhhHHHHHHHHHHHH-hhhCCC----CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC
Q psy12825 152 QTMARDAVSTVDRLL-SQVAPS----IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA 226 (488)
Q Consensus 152 k~la~eivlid~~~~-~e~~~~----~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~ 226 (488)
-.+++.+...++... ++.... .....++|+|||.|.+|..+|..+..-|. +|+.||...... ...++
T Consensus 108 L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~--~V~~~d~~~~~~--~~~~~---- 179 (525)
T TIGR01327 108 LAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGM--KVLAYDPYISPE--RAEQL---- 179 (525)
T ss_pred HHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEECCCCChh--HHHhc----
Confidence 457777776664432 211110 34567899999999999999998865555 899999843211 11111
Q ss_pred CCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 227 PFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 227 ~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+....++ +.+++||+|++...... ++..++- .+.+....|.+++||++-
T Consensus 180 ------g~~~~~~l~ell~~aDvV~l~lPlt~-----------~T~~li~--~~~l~~mk~ga~lIN~aR 230 (525)
T TIGR01327 180 ------GVELVDDLDELLARADFITVHTPLTP-----------ETRGLIG--AEELAKMKKGVIIVNCAR 230 (525)
T ss_pred ------CCEEcCCHHHHHhhCCEEEEccCCCh-----------hhccCcC--HHHHhcCCCCeEEEEcCC
Confidence 11223355 46889999999862110 1111221 234444567888888873
No 356
>PRK08339 short chain dehydrogenase; Provisional
Probab=93.23 E-value=1 Score=44.45 Aligned_cols=117 Identities=10% Similarity=0.083 Sum_probs=69.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc----------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA---------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e---------- 241 (488)
++.+.+.|+|+ |.+|..++..|+..|. +|+++|++.+.++....++.... ......... +|.+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES--NVDVSYIVADLTKREDLERTVKELK 81 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc--CCceEEEEecCCCHHHHHHHHHHHH
Confidence 34567888998 8999999999999986 89999999888776666664321 001111111 1221
Q ss_pred ccCCCcEEEEecccccCC---CcchH---hhHhhh----HHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 242 MSEGSRIVIITAGVRSLV---GETRL---QLVDRN----VKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 242 al~dADiVIitag~~~k~---G~~r~---dll~~N----~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
.+...|++|.++|..... ..+.. ..+.-| ....+.+.+.+.+.. .+.||+++-.
T Consensus 82 ~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS~ 145 (263)
T PRK08339 82 NIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTSV 145 (263)
T ss_pred hhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcCc
Confidence 123589999998864321 11222 223334 334566666665543 3556666543
No 357
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=93.14 E-value=1.8 Score=44.05 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=67.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc----cc---
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA----MS--- 243 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e----al--- 243 (488)
.+.++|.|+|+ |.+|..++..|+..|. +|++++++.++++....++... .....+. ..| .+ .+
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~-~~Dl~~~~~v~~~~~~~ 77 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQELGIP---PDSYTII-HIDLGDLDSVRRFVDDF 77 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcc---CCceEEE-EecCCCHHHHHHHHHHH
Confidence 35678999998 9999999999999885 8999999988777665555321 0111111 122 21 11
Q ss_pred ----CCCcEEEEecccccC----CCcch---HhhHhhhHH----HHHHHHHHHhccCC-CcEEEEEe
Q psy12825 244 ----EGSRIVIITAGVRSL----VGETR---LQLVDRNVK----IFKDLIPKIAKGSP-DCILLIIS 294 (488)
Q Consensus 244 ----~dADiVIitag~~~k----~G~~r---~dll~~N~~----ii~ei~~~I~~~~p-~a~vIv~T 294 (488)
...|++|..+|.... ...+. ...+..|.- +.+.+.+.+.+... .+.||+++
T Consensus 78 ~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vs 144 (322)
T PRK07453 78 RALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILG 144 (322)
T ss_pred HHhCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEc
Confidence 248999999986321 11222 223455543 44555555555432 23455554
No 358
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=93.13 E-value=0.53 Score=48.37 Aligned_cols=134 Identities=12% Similarity=0.134 Sum_probs=75.0
Q ss_pred CcEEEEec-chhHHHHH-HHH-HhhhhHHHHHHHHHHHH-hhhCCC----------CCCCCceEEEEecccchHHHHHHH
Q psy12825 131 QKITVVGA-GQVGMACT-YSI-LTQTMARDAVSTVDRLL-SQVAPS----------IESPDQKITVVGAGQVGMACTYSI 196 (488)
Q Consensus 131 ~ki~vvg~-g~vg~~~a-~~~-~~k~la~eivlid~~~~-~e~~~~----------~~~~~~KIaIIGAG~vG~~ia~~L 196 (488)
..|.|.-+ |..+-++| |++ ++-.+++.+...++... ++.... .....++|+|||.|.+|+.+|..+
T Consensus 85 ~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~ 164 (311)
T PRK08410 85 KGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIA 164 (311)
T ss_pred CCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 35555443 33333444 322 22357777776664431 222110 245778999999999999998876
Q ss_pred HHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHH
Q psy12825 197 LTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFK 275 (488)
Q Consensus 197 a~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ 275 (488)
. ++.-+|.-||+..... +. .+. ..++ +.++.||+|++..... + +|-.++-
T Consensus 165 ~--~fgm~V~~~d~~~~~~--------~~-------~~~-~~~l~ell~~sDvv~lh~Plt--~---------~T~~li~ 215 (311)
T PRK08410 165 Q--AFGAKVVYYSTSGKNK--------NE-------EYE-RVSLEELLKTSDIISIHAPLN--E---------KTKNLIA 215 (311)
T ss_pred h--hcCCEEEEECCCcccc--------cc-------Cce-eecHHHHhhcCCEEEEeCCCC--c---------hhhcccC
Confidence 4 4444899999853110 00 011 1255 4589999999986211 1 1111221
Q ss_pred HHHHHHhccCCCcEEEEEeC
Q psy12825 276 DLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 276 ei~~~I~~~~p~a~vIv~TN 295 (488)
.+.+....|++++||++-
T Consensus 216 --~~~~~~Mk~~a~lIN~aR 233 (311)
T PRK08410 216 --YKELKLLKDGAILINVGR 233 (311)
T ss_pred --HHHHHhCCCCeEEEECCC
Confidence 223444568899999873
No 359
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=93.12 E-value=0.38 Score=49.85 Aligned_cols=67 Identities=10% Similarity=0.150 Sum_probs=47.5
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
+..+.++|+|||.|++|..+|..|...|+ +|+.+|......+ ..... ... . .++ ++++.||+|++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~--~ViV~~r~~~s~~-----~A~~~----G~~--v-~sl~Eaak~ADVV~l 77 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGV--EVVVGVRPGKSFE-----VAKAD----GFE--V-MSVSEAVRTAQVVQM 77 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcC--EEEEEECcchhhH-----HHHHc----CCE--E-CCHHHHHhcCCEEEE
Confidence 56678899999999999999999988887 8888885422111 11111 011 1 245 67999999999
Q ss_pred ec
Q psy12825 252 TA 253 (488)
Q Consensus 252 ta 253 (488)
..
T Consensus 78 lL 79 (335)
T PRK13403 78 LL 79 (335)
T ss_pred eC
Confidence 95
No 360
>PRK07825 short chain dehydrogenase; Provisional
Probab=93.12 E-value=1.1 Score=44.07 Aligned_cols=113 Identities=17% Similarity=0.189 Sum_probs=67.2
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-----------cc
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-----------AM 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-----------ea 242 (488)
++.++|.|+|| |.+|..++..|+..|. .|++.+++++.++....++..... ....+ +|+ +.
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~D~---~~~~~~~~~~~~~~~~ 75 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLVVG--GPLDV---TDPASFAAFLDAVEAD 75 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccceE--EEccC---CCHHHHHHHHHHHHHH
Confidence 34578999999 9999999999998886 799999998877665544431100 00011 111 12
Q ss_pred cCCCcEEEEecccccCCC---cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 243 SEGSRIVIITAGVRSLVG---ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 243 l~dADiVIitag~~~k~G---~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.+.|++|.++|...... .+ -...+..|+. +.+.+.+.+.+.. .+.|++++-
T Consensus 76 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS 137 (273)
T PRK07825 76 LGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRG-RGHVVNVAS 137 (273)
T ss_pred cCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEEcC
Confidence 357899999988643211 11 1223445543 3444555554433 345666653
No 361
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=93.11 E-value=1.7 Score=49.45 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=39.4
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
.++.++|.|+|+ |.+|..++..|+..|. +|+++|++.+.++....++.
T Consensus 411 ~l~gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~~~~~~~~~~l~ 459 (676)
T TIGR02632 411 TLARRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNLEAAEAVAAEIN 459 (676)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHH
Confidence 345578999998 9999999999999886 89999999887776655554
No 362
>PRK07063 short chain dehydrogenase; Provisional
Probab=93.10 E-value=1.4 Score=42.93 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=53.6
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e-------- 241 (488)
++.++|.|+|+ |.+|..++..|+..|. +|+++|++++.++....++.... ...++. ...| .+
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDV---AGARVLAVPADVTDAASVAAAVAA 79 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcc---CCceEEEEEccCCCHHHHHHHHHH
Confidence 45678999998 9999999999999886 89999999888877666665421 011221 1122 11
Q ss_pred ---ccCCCcEEEEecccc
Q psy12825 242 ---MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 ---al~dADiVIitag~~ 256 (488)
.+...|++|..+|..
T Consensus 80 ~~~~~g~id~li~~ag~~ 97 (260)
T PRK07063 80 AEEAFGPLDVLVNNAGIN 97 (260)
T ss_pred HHHHhCCCcEEEECCCcC
Confidence 134689999998854
No 363
>PRK06940 short chain dehydrogenase; Provisional
Probab=93.09 E-value=1.4 Score=43.84 Aligned_cols=85 Identities=19% Similarity=0.226 Sum_probs=51.5
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcC---Ccc----------ccC
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGS---DIA----------MSE 244 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~tt---d~e----------al~ 244 (488)
.+.|.|+|.+|..++..|+ .|. +|++.|++++.++....++.+.. .++. ... |.+ .+.
T Consensus 4 ~~lItGa~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dv~d~~~i~~~~~~~~~~g 75 (275)
T PRK06940 4 VVVVIGAGGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREAG-----FDVSTQEVDVSSRESVKALAATAQTLG 75 (275)
T ss_pred EEEEECCChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhcC-----CeEEEEEeecCCHHHHHHHHHHHHhcC
Confidence 4566678999999999985 554 89999998877765555554311 1111 111 221 124
Q ss_pred CCcEEEEecccccCCCcchHhhHhhhHH
Q psy12825 245 GSRIVIITAGVRSLVGETRLQLVDRNVK 272 (488)
Q Consensus 245 dADiVIitag~~~k~G~~r~dll~~N~~ 272 (488)
..|++|.++|.... ..+-...+..|+.
T Consensus 76 ~id~li~nAG~~~~-~~~~~~~~~vN~~ 102 (275)
T PRK06940 76 PVTGLVHTAGVSPS-QASPEAILKVDLY 102 (275)
T ss_pred CCCEEEECCCcCCc-hhhHHHHHHHhhH
Confidence 68999999986421 1223344555654
No 364
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.09 E-value=1.1 Score=42.80 Aligned_cols=47 Identities=23% Similarity=0.366 Sum_probs=38.6
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
++.++|.|+|+ |.+|..++..|+.+|. +|.+++++++..+....++.
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~ 50 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNEEAAEALAAELR 50 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHHHH
Confidence 34578999999 9999999999998887 79999999877765555554
No 365
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=93.08 E-value=1.4 Score=44.68 Aligned_cols=104 Identities=18% Similarity=0.115 Sum_probs=60.6
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---c----cccCCCcE
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---I----AMSEGSRI 248 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~----eal~dADi 248 (488)
.++|.|+|| |.+|++++..|+..|. +|++...+.+..+. ...+...........+. ..| + +.++++|+
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~d~ 80 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKK-TEHLLALDGAKERLKLF-KADLLEESSFEQAIEGCDA 80 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHH-HHHHHhccCCCCceEEE-ecCCCCcchHHHHHhCCCE
Confidence 468999998 9999999999999886 77766555443321 11221110000111221 122 2 34778999
Q ss_pred EEEecccccC-CCcchHhhHhhhHHHHHHHHHHHhcc
Q psy12825 249 VIITAGVRSL-VGETRLQLVDRNVKIFKDLIPKIAKG 284 (488)
Q Consensus 249 VIitag~~~k-~G~~r~dll~~N~~ii~ei~~~I~~~ 284 (488)
||-+++.... ......+++..|+.-...+.+.+.+.
T Consensus 81 vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~ 117 (322)
T PLN02986 81 VFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKET 117 (322)
T ss_pred EEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhc
Confidence 9999874321 11122345566777777777776654
No 366
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=93.08 E-value=0.19 Score=44.46 Aligned_cols=73 Identities=21% Similarity=0.216 Sum_probs=44.3
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccCCCcEEEEec
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~dADiVIita 253 (488)
+||+|+|+ |.||..++..+....-..=+..+|.+++... -.|+.+..... ...+..++|++ .+..+|+||-..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~--g~d~g~~~~~~-~~~~~v~~~l~~~~~~~DVvIDfT 75 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKV--GKDVGELAGIG-PLGVPVTDDLEELLEEADVVIDFT 75 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTT--TSBCHHHCTSS-T-SSBEBS-HHHHTTH-SEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccc--cchhhhhhCcC-CcccccchhHHHhcccCCEEEEcC
Confidence 58999999 9999999999888542222456677663222 23444433211 33344557774 577899888773
No 367
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.04 E-value=0.64 Score=49.93 Aligned_cols=123 Identities=16% Similarity=0.251 Sum_probs=68.9
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCChh-HHHHHHHHHhhcCCCCCCCcEEEcCCcc------ccCCCcEEEE
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNED-RCKGEMLDLQHGAPFLRSPKIESGSDIA------MSEGSRIVII 251 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e-~l~g~~~dL~~~~~~~~~~~v~~ttd~e------al~dADiVIi 251 (488)
||.|||+|..|.+.|..|...|. +|.++|.++. ........|.+. ..++....+.+ .+.+.|+||.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~--~V~~~D~~~~~~~~~~~~~l~~~-----gi~~~~g~~~~~~~~~~~~~~~d~vv~ 74 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGW--EVVVSDRNDSPELLERQQELEQE-----GITVKLGKPLELESFQPWLDQPDLVVV 74 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHHHHHHc-----CCEEEECCccchhhhhHHhhcCCEEEE
Confidence 79999999999999888888887 8999998543 222111223332 12232222222 4778999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch------hHHHHHHHhcCCC
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD------VLTYISWKLSGFP 311 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd------i~t~~~~k~sg~p 311 (488)
+.+.+... .........+++++.++........ +..+|-+|-... +++.++.. .|+.
T Consensus 75 s~gi~~~~-~~~~~a~~~~i~v~~~~~~~~~~~~-~~~~I~VTGT~GKTTTt~ml~~iL~~-~g~~ 137 (459)
T PRK02705 75 SPGIPWDH-PTLVELRERGIEVIGEIELAWRALK-HIPWVGITGTNGKTTVTALLAHILQA-AGLN 137 (459)
T ss_pred CCCCCCCC-HHHHHHHHcCCcEEEhHHHHHHhhc-CCCEEEEeCCCchHHHHHHHHHHHHH-cCCC
Confidence 88776321 1111222455666655544322222 223556654443 44555543 4543
No 368
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=93.03 E-value=0.46 Score=45.38 Aligned_cols=72 Identities=21% Similarity=0.229 Sum_probs=49.5
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccCCCcEEEEeccc
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSEGSRIVIITAGV 255 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dADiVIitag~ 255 (488)
|||+|||| |.+|+.++.....+|. |++-+=+|+.++... .++. . ....|.--+. -+++.|-|+||.+.+.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~~-~~~~-i----~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAAR-QGVT-I----LQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhcccc-ccce-e----ecccccChhhhHhhhcCCceEEEeccC
Confidence 79999999 9999999999999998 889888888766431 1110 0 0011110011 1579999999999875
Q ss_pred cc
Q psy12825 256 RS 257 (488)
Q Consensus 256 ~~ 257 (488)
+.
T Consensus 73 ~~ 74 (211)
T COG2910 73 GA 74 (211)
T ss_pred CC
Confidence 53
No 369
>PRK07904 short chain dehydrogenase; Provisional
Probab=93.00 E-value=1.4 Score=43.29 Aligned_cols=114 Identities=16% Similarity=0.181 Sum_probs=66.7
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcC-CCCeEEEEeCChhH-HHHHHHHHhhcCCCCCCCcEEEc--CCc-------cc-
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQG-IYSNFCLIDSNEDR-CKGEMLDLQHGAPFLRSPKIESG--SDI-------AM- 242 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~-l~~el~L~Di~~e~-l~g~~~dL~~~~~~~~~~~v~~t--td~-------ea- 242 (488)
+.++|.|+|| |.+|..++..|+.++ . .|++++++++. ++....++.... .....+... +|. +.
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~v~~~~~D~~~~~~~~~~~~~~ 82 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAG--ASSVEVIDFDALDTDSHPKVIDAA 82 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcC--CCceEEEEecCCChHHHHHHHHHH
Confidence 4567999999 999999999999875 5 89999998875 666666665421 001111111 121 11
Q ss_pred --cCCCcEEEEecccccCCCc---ch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 243 --SEGSRIVIITAGVRSLVGE---TR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 243 --l~dADiVIitag~~~k~G~---~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
..+.|++|..+|....... +. .+.+..|+. +.+.+.+.+.+... +.+++++
T Consensus 83 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~-~~iv~is 145 (253)
T PRK07904 83 FAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF-GQIIAMS 145 (253)
T ss_pred HhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC-ceEEEEe
Confidence 1379999998876432111 11 123455543 33556666666544 4455554
No 370
>PRK06487 glycerate dehydrogenase; Provisional
Probab=92.98 E-value=0.46 Score=48.97 Aligned_cols=111 Identities=9% Similarity=0.091 Sum_probs=65.2
Q ss_pred hhhHHHHHHHHHHH-HhhhCCC----------CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHH
Q psy12825 152 QTMARDAVSTVDRL-LSQVAPS----------IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEML 220 (488)
Q Consensus 152 k~la~eivlid~~~-~~e~~~~----------~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~ 220 (488)
-.+++.+...++.. .++.... .....++|+|||.|.+|..+|..+. ++.-+|+-||.....
T Consensus 112 L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~--~fgm~V~~~~~~~~~------ 183 (317)
T PRK06487 112 LALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAE--AFGMRVLIGQLPGRP------ 183 (317)
T ss_pred HHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHh--hCCCEEEEECCCCCc------
Confidence 35677776666442 2221110 2356789999999999999988775 444489999975210
Q ss_pred HHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 221 DLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 221 dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
... . ..++ +.++.||+|++..... + +|-.++- .+.+....|.+++||++-
T Consensus 184 ---~~~------~---~~~l~ell~~sDiv~l~lPlt--~---------~T~~li~--~~~~~~mk~ga~lIN~aR 234 (317)
T PRK06487 184 ---ARP------D---RLPLDELLPQVDALTLHCPLT--E---------HTRHLIG--ARELALMKPGALLINTAR 234 (317)
T ss_pred ---ccc------c---ccCHHHHHHhCCEEEECCCCC--h---------HHhcCcC--HHHHhcCCCCeEEEECCC
Confidence 000 0 1245 4589999999985211 1 1111111 223344467899999974
No 371
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=92.94 E-value=1.1 Score=43.51 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=40.7
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
..+.++|.|+|+ |.+|..++..|+..|. +|+++|++++.++....++..
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~ 57 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRA 57 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHh
Confidence 356789999999 9999999999998886 899999998877766666653
No 372
>PRK08324 short chain dehydrogenase; Validated
Probab=92.92 E-value=1.2 Score=50.69 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=67.0
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc----------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA---------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e---------- 241 (488)
++.++|.|+|+ |.+|..++..|+..|. +|+++|++.+.++....++.... ...+... +|.+
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~~----~v~~v~~Dvtd~~~v~~~~~~~~ 493 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGPD----RALGVACDVTDEAAVQAAFEEAA 493 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhccC----cEEEEEecCCCHHHHHHHHHHHH
Confidence 34578999997 9999999999998886 89999999887766555554310 0111111 1221
Q ss_pred -ccCCCcEEEEecccccCC---CcchH---hhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 242 -MSEGSRIVIITAGVRSLV---GETRL---QLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 242 -al~dADiVIitag~~~k~---G~~r~---dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
.+.+.|+||.++|..... ..+.. ..+..|.. +.+...+.+++....+.+++++
T Consensus 494 ~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 494 LAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 134789999999864321 11111 12334433 4444455555543335566655
No 373
>PRK06182 short chain dehydrogenase; Validated
Probab=92.92 E-value=0.29 Score=48.32 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=64.1
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCCcc-----------c
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSDIA-----------M 242 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd~e-----------a 242 (488)
+.++|.|+|+ |.+|..++..|+..|. +|++.+++++.++.... ... .-+.. -+|.+ .
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~l~~~~~---~~~-----~~~~~Dv~~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDKMEDLAS---LGV-----HPLSLDVTDEASIKAAVDTIIAE 71 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHh---CCC-----eEEEeeCCCHHHHHHHHHHHHHh
Confidence 4578999998 9999999999998886 89999998876653221 100 00111 01221 1
Q ss_pred cCCCcEEEEecccccCC---Ccc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 243 SEGSRIVIITAGVRSLV---GET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 243 l~dADiVIitag~~~k~---G~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.+.|++|.++|..... ..+ ....+..|.. ..+.+.+.+++... +.+|+++-
T Consensus 72 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-g~iv~isS 133 (273)
T PRK06182 72 EGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRS-GRIINISS 133 (273)
T ss_pred cCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcc
Confidence 23789999998864221 111 2233444543 34555566655543 34566553
No 374
>PLN02253 xanthoxin dehydrogenase
Probab=92.88 E-value=3.7 Score=40.48 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=36.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHH
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL 222 (488)
++.+++.|+|+ |.+|..++..|+..|. +|+++|.+++..+....++
T Consensus 16 l~~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~ 62 (280)
T PLN02253 16 LLGKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSL 62 (280)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHh
Confidence 44578999998 9999999999998886 8999999876665544444
No 375
>PRK07062 short chain dehydrogenase; Provisional
Probab=92.87 E-value=1.2 Score=43.68 Aligned_cols=77 Identities=18% Similarity=0.259 Sum_probs=53.6
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcC---Ccc--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGS---DIA-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~tt---d~e-------- 241 (488)
++.+.+.|+|+ |.+|..++..|+..|. +|++.++++++++....++.... . ..++. ... |.+
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~-~~~~~~~~~D~~~~~~v~~~~~~ 80 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKF--P-GARLLAARCDVLDEADVAAFAAA 80 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhC--C-CceEEEEEecCCCHHHHHHHHHH
Confidence 34568999999 8999999999999887 79999999888877666665421 1 11221 111 221
Q ss_pred ---ccCCCcEEEEecccc
Q psy12825 242 ---MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 ---al~dADiVIitag~~ 256 (488)
.+...|++|.++|..
T Consensus 81 ~~~~~g~id~li~~Ag~~ 98 (265)
T PRK07062 81 VEARFGGVDMLVNNAGQG 98 (265)
T ss_pred HHHhcCCCCEEEECCCCC
Confidence 234679999999864
No 376
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=92.84 E-value=0.22 Score=46.44 Aligned_cols=68 Identities=15% Similarity=0.254 Sum_probs=43.0
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIita 253 (488)
....++++|+|.|.+|.++|..|...|. .|..+|+|+-++-...+ +. .++. +-.++++.+|++|.+.
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga--~V~V~e~DPi~alqA~~---dG------f~v~--~~~~a~~~adi~vtaT 86 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGA--RVTVTEIDPIRALQAAM---DG------FEVM--TLEEALRDADIFVTAT 86 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT---EEEEE-SSHHHHHHHHH---TT-------EEE---HHHHTTT-SEEEE-S
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCC--EEEEEECChHHHHHhhh---cC------cEec--CHHHHHhhCCEEEECC
Confidence 4467899999999999999999988776 89999999965432222 21 1222 1236899999988875
Q ss_pred c
Q psy12825 254 G 254 (488)
Q Consensus 254 g 254 (488)
|
T Consensus 87 G 87 (162)
T PF00670_consen 87 G 87 (162)
T ss_dssp S
T ss_pred C
Confidence 4
No 377
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=92.83 E-value=0.66 Score=46.17 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=29.3
Q ss_pred CCceEEEEecccchHHHHHHHHHcCC-----C----CeEEEEeC
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGI-----Y----SNFCLIDS 210 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l-----~----~el~L~Di 210 (488)
++.||.|||+|.+|+.++..|+..|+ . .+|+|+|-
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~ 53 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDD 53 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECC
Confidence 56799999999999999999998642 1 18999996
No 378
>PRK07109 short chain dehydrogenase; Provisional
Probab=92.80 E-value=1.7 Score=44.84 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=53.8
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc-------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA------- 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e------- 241 (488)
.++.++|.|+|| |.+|..++..|+..|. +|++++++++.++....++.... .++. ...| .+
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g-----~~~~~v~~Dv~d~~~v~~~~~ 77 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG-----GEALAVVADVADAEAVQAAAD 77 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC-----CcEEEEEecCCCHHHHHHHHH
Confidence 345678999999 9999999999999886 89999999888877666665321 1111 1122 21
Q ss_pred ----ccCCCcEEEEecccc
Q psy12825 242 ----MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 ----al~dADiVIitag~~ 256 (488)
.+...|++|..++..
T Consensus 78 ~~~~~~g~iD~lInnAg~~ 96 (334)
T PRK07109 78 RAEEELGPIDTWVNNAMVT 96 (334)
T ss_pred HHHHHCCCCCEEEECCCcC
Confidence 134689999998754
No 379
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=92.77 E-value=0.39 Score=46.79 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=37.4
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHH
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL 222 (488)
+.++|.|+|+ |.+|..++..|+..|. +|+++|.+.+.++....++
T Consensus 5 ~~~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~ 50 (257)
T PRK07067 5 QGKVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEI 50 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHh
Confidence 3467999998 9999999999999987 8999999988776655444
No 380
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=92.75 E-value=0.2 Score=47.75 Aligned_cols=99 Identities=15% Similarity=0.249 Sum_probs=63.3
Q ss_pred CCCCCceEEEEecccchHHHHHH-HHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccC--CCcE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYS-ILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSE--GSRI 248 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~-La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~--dADi 248 (488)
+..+..+|.|||+|.+|.+++.. +..+.-..-+..+|++++..-... .+ ..|.--.+++ -++ |.|+
T Consensus 80 g~~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~---~~-------v~V~~~d~le~~v~~~dv~i 149 (211)
T COG2344 80 GQDKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKI---GD-------VPVYDLDDLEKFVKKNDVEI 149 (211)
T ss_pred CCCcceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCccc---CC-------eeeechHHHHHHHHhcCccE
Confidence 55667899999999999987653 443444456789999997443221 11 1122112332 233 8999
Q ss_pred EEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh
Q psy12825 249 VIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV 299 (488)
Q Consensus 249 VIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi 299 (488)
.|+|+. .+..++++..+.+..=++ |+++| |+.+
T Consensus 150 aiLtVP----------------a~~AQ~vad~Lv~aGVkG-IlNFt-Pv~l 182 (211)
T COG2344 150 AILTVP----------------AEHAQEVADRLVKAGVKG-ILNFT-PVRL 182 (211)
T ss_pred EEEEcc----------------HHHHHHHHHHHHHcCCce-EEecc-ceEe
Confidence 999962 235577888888877667 67776 6643
No 381
>PRK06125 short chain dehydrogenase; Provisional
Probab=92.75 E-value=3 Score=40.63 Aligned_cols=115 Identities=14% Similarity=0.170 Sum_probs=68.7
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-------cccCC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-------AMSEG 245 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-------eal~d 245 (488)
+.++|.|+|+ |.+|..++..|+..|. +|+++|++++.++....++..... ....+... +|. +.+..
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~D~~~~~~~~~~~~~~g~ 81 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAHG--VDVAVHALDLSSPEAREQLAAEAGD 81 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhcC--CceEEEEecCCCHHHHHHHHHHhCC
Confidence 4578999998 8999999999998887 899999998877766666653210 01111111 122 23567
Q ss_pred CcEEEEecccccC-C--Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 246 SRIVIITAGVRSL-V--GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 246 ADiVIitag~~~k-~--G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.|++|.++|.... + ..+. ...+..|+. +.+.+.+.+.+.. .+.+++++.
T Consensus 82 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~iss 140 (259)
T PRK06125 82 IDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG-SGVIVNVIG 140 (259)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEecC
Confidence 9999999886421 1 1111 223444544 3455555555442 345666553
No 382
>PRK07060 short chain dehydrogenase; Provisional
Probab=92.74 E-value=0.46 Score=45.68 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=35.2
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHH
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGE 218 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~ 218 (488)
++.+++.|+|+ |.+|..++..|+..+. +|++++++.+.++..
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~~~~~ 49 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAALDRL 49 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHH
Confidence 44578999999 8999999999999886 899999988766543
No 383
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=92.73 E-value=0.034 Score=56.96 Aligned_cols=32 Identities=34% Similarity=0.553 Sum_probs=29.1
Q ss_pred CCcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 130 DQKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 130 ~~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
+.||+|||+|.||.++||++..++++ +++++|
T Consensus 1 ~~KV~VIGaG~vG~~iA~~la~~g~~-~VvlvD 32 (305)
T TIGR01763 1 RKKISVIGAGFVGATTAFRLAEKELA-DLVLLD 32 (305)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCC-eEEEEe
Confidence 35999999999999999999999988 688888
No 384
>PRK05717 oxidoreductase; Validated
Probab=92.70 E-value=0.86 Score=44.40 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=34.1
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHH
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKG 217 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g 217 (488)
.+.++|.|+|+ |.+|.+++..|+..|. +|+++|.++++...
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~ 49 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSK 49 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHH
Confidence 34578999998 9999999999998886 89999988765543
No 385
>PRK05854 short chain dehydrogenase; Provisional
Probab=92.65 E-value=2.3 Score=43.26 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=54.6
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c-------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A------- 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e------- 241 (488)
.++.+++.|+|| +.+|..++..|+..|. +|++.+++.++++....++.... ...++. ...|. +
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~---~~~~v~~~~~Dl~d~~sv~~~~~ 85 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAV---PDAKLSLRALDLSSLASVAALGE 85 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC---CCCceEEEEecCCCHHHHHHHHH
Confidence 345678999999 9999999999999886 89999999888877666665421 111221 11222 1
Q ss_pred ----ccCCCcEEEEecccc
Q psy12825 242 ----MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 ----al~dADiVIitag~~ 256 (488)
.....|++|..+|..
T Consensus 86 ~~~~~~~~iD~li~nAG~~ 104 (313)
T PRK05854 86 QLRAEGRPIHLLINNAGVM 104 (313)
T ss_pred HHHHhCCCccEEEECCccc
Confidence 134589999998864
No 386
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=92.63 E-value=0.34 Score=51.81 Aligned_cols=113 Identities=15% Similarity=0.193 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHH-HhhhCC----CCCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC
Q psy12825 153 TMARDAVSTVDRL-LSQVAP----SIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP 227 (488)
Q Consensus 153 ~la~eivlid~~~-~~e~~~----~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~ 227 (488)
.+++.+...+... .++... ......++|+|||.|.+|..+|..+..-|. +|.-||...... .
T Consensus 122 ~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm--~V~~~d~~~~~~------~----- 188 (409)
T PRK11790 122 LLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGM--RVYFYDIEDKLP------L----- 188 (409)
T ss_pred HHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEECCCcccc------c-----
Confidence 4666666555432 122211 134578899999999999999987765455 899999753110 0
Q ss_pred CCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 228 FLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 228 ~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
..+....++ +.++.||+|++... .. ..|..++- .+.+....|.+++||++-
T Consensus 189 ----~~~~~~~~l~ell~~sDiVslh~P--lt---------~~T~~li~--~~~l~~mk~ga~lIN~aR 240 (409)
T PRK11790 189 ----GNARQVGSLEELLAQSDVVSLHVP--ET---------PSTKNMIG--AEELALMKPGAILINASR 240 (409)
T ss_pred ----CCceecCCHHHHHhhCCEEEEcCC--CC---------hHHhhccC--HHHHhcCCCCeEEEECCC
Confidence 012223356 45899999999852 11 11222221 223444567899999873
No 387
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=92.62 E-value=0.81 Score=48.38 Aligned_cols=113 Identities=17% Similarity=0.217 Sum_probs=64.6
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHH--HHHHhhcCCCCCCCcEEEc--CCc----ccc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGE--MLDLQHGAPFLRSPKIESG--SDI----AMS 243 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~--~~dL~~~~~~~~~~~v~~t--td~----eal 243 (488)
...+.+||.|+|+ |.+|..++..|+.++. +|++++++...+... ..++... .....+... +|. +.+
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~---~~~v~~v~~Dl~d~~~l~~~~ 130 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKE---LPGAEVVFGDVTDADSLRKVL 130 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhh---cCCceEEEeeCCCHHHHHHHH
Confidence 4456789999999 9999999999998886 899999876543210 1111111 011222221 232 234
Q ss_pred C----CCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 244 E----GSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 244 ~----dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+ ++|+||.+++.+... . .+....|......+.+.+++..-.- +|++|
T Consensus 131 ~~~~~~~D~Vi~~aa~~~~~--~-~~~~~vn~~~~~~ll~aa~~~gv~r-~V~iS 181 (390)
T PLN02657 131 FSEGDPVDVVVSCLASRTGG--V-KDSWKIDYQATKNSLDAGREVGAKH-FVLLS 181 (390)
T ss_pred HHhCCCCcEEEECCccCCCC--C-ccchhhHHHHHHHHHHHHHHcCCCE-EEEEe
Confidence 4 589999887643211 1 1223345555566666666654333 44444
No 388
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=92.57 E-value=0.42 Score=46.47 Aligned_cols=41 Identities=20% Similarity=0.200 Sum_probs=34.6
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHH
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEML 220 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~ 220 (488)
|+|.|+|+ |.+|..++..|+..|. +|++++++++.++....
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~ 42 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKD 42 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHH
Confidence 57999998 9999999999998886 89999999877665433
No 389
>PRK06949 short chain dehydrogenase; Provisional
Probab=92.57 E-value=1.9 Score=41.79 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=39.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
+..++|.|+|+ |.+|..++..|+..+. +|+++++++++++....++.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~ 54 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRVERLKELRAEIE 54 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence 45689999998 9999999999998886 89999999887776655554
No 390
>PRK12827 short chain dehydrogenase; Provisional
Probab=92.48 E-value=1.3 Score=42.47 Aligned_cols=33 Identities=18% Similarity=0.471 Sum_probs=28.8
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDS 210 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di 210 (488)
+.++|.|+|| |.+|..++..|+.++. ++++++.
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~ 38 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDI 38 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcC
Confidence 4578999998 9999999999998886 7888775
No 391
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=92.47 E-value=0.29 Score=47.99 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=48.8
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CC----c-ccc-
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SD----I-AMS- 243 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td----~-eal- 243 (488)
+..+++||.|+|| |.+|..++..|+.++. +|+.+.++.+++.... ... ....+... +| . +.+
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~---~~~----~~~~~~~~Dl~d~~~~l~~~~~ 83 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKTSL---PQD----PSLQIVRADVTEGSDKLVEAIG 83 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHHhc---ccC----CceEEEEeeCCCCHHHHHHHhh
Confidence 5556789999998 9999999999998876 7888887776543211 110 01111111 12 1 345
Q ss_pred CCCcEEEEecccc
Q psy12825 244 EGSRIVIITAGVR 256 (488)
Q Consensus 244 ~dADiVIitag~~ 256 (488)
.++|+||.+++..
T Consensus 84 ~~~d~vi~~~g~~ 96 (251)
T PLN00141 84 DDSDAVICATGFR 96 (251)
T ss_pred cCCCEEEECCCCC
Confidence 6899999887643
No 392
>PRK06180 short chain dehydrogenase; Provisional
Probab=92.46 E-value=1.9 Score=42.63 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=34.0
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHH
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKG 217 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g 217 (488)
.+++|.|+|+ |.+|.+++..|+..|. +|++++++++.++.
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~ 43 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAARAD 43 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHHHHH
Confidence 3467999999 9999999999998886 89999998876653
No 393
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=92.44 E-value=2.3 Score=41.89 Aligned_cols=48 Identities=15% Similarity=0.370 Sum_probs=39.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
++.+++.|+|+ |.+|..++..|+..|. +|+++|++++.++....++.+
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~ 56 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQEKAEAVVAEIKA 56 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh
Confidence 45678999998 9999999999998887 899999988777666666643
No 394
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.43 E-value=0.25 Score=50.68 Aligned_cols=76 Identities=21% Similarity=0.228 Sum_probs=52.5
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC--c-cccCCCcEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD--I-AMSEGSRIV 249 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd--~-eal~dADiV 249 (488)
.-..+-||+|||+|.+|+.-|...+..+ .+|.++|+|.++++. ..|+. ........++. . ++++.||+|
T Consensus 164 pGV~~~kv~iiGGGvvgtnaAkiA~glg--A~Vtild~n~~rl~~-ldd~f-----~~rv~~~~st~~~iee~v~~aDlv 235 (371)
T COG0686 164 PGVLPAKVVVLGGGVVGTNAAKIAIGLG--ADVTILDLNIDRLRQ-LDDLF-----GGRVHTLYSTPSNIEEAVKKADLV 235 (371)
T ss_pred CCCCCccEEEECCccccchHHHHHhccC--CeeEEEecCHHHHhh-hhHhh-----CceeEEEEcCHHHHHHHhhhccEE
Confidence 4456789999999999987666544333 489999999998873 33332 12223334443 3 689999999
Q ss_pred EEecccc
Q psy12825 250 IITAGVR 256 (488)
Q Consensus 250 Iitag~~ 256 (488)
|-++-+|
T Consensus 236 IgaVLIp 242 (371)
T COG0686 236 IGAVLIP 242 (371)
T ss_pred EEEEEec
Confidence 9987544
No 395
>PRK08862 short chain dehydrogenase; Provisional
Probab=92.42 E-value=2.6 Score=40.81 Aligned_cols=114 Identities=8% Similarity=0.040 Sum_probs=68.4
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcC---Cc-----------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS---DI----------- 240 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~tt---d~----------- 240 (488)
+.+.+.|+|+ +.+|..++..|+..|. +|++++++++.++....++.... .. ...... |.
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~~~---~~-~~~~~~D~~~~~~~~~~~~~~~ 77 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSALT---DN-VYSFQLKDFSQESIRHLFDAIE 77 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC---CC-eEEEEccCCCHHHHHHHHHHHH
Confidence 4568899998 7799999999999987 89999999988877666664321 11 111111 21
Q ss_pred cccC-CCcEEEEecccccCC----CcchHh---hHhhhH----HHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 241 AMSE-GSRIVIITAGVRSLV----GETRLQ---LVDRNV----KIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 241 eal~-dADiVIitag~~~k~----G~~r~d---ll~~N~----~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.+. .-|++|..+|....+ ..+..+ .+..|. .+.+.+.+.+.+....+.|++++.
T Consensus 78 ~~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS 144 (227)
T PRK08862 78 QQFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVIS 144 (227)
T ss_pred HHhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 1234 689999998643221 112222 222232 234455566655444566777764
No 396
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=92.39 E-value=0.039 Score=57.11 Aligned_cols=32 Identities=28% Similarity=0.195 Sum_probs=29.6
Q ss_pred cEEEEec-chhHHHHHHHHHhhhhHH-----HHHHHHH
Q psy12825 132 KITVVGA-GQVGMACTYSILTQTMAR-----DAVSTVD 163 (488)
Q Consensus 132 ki~vvg~-g~vg~~~a~~~~~k~la~-----eivlid~ 163 (488)
||+|||+ |.||.++||++..+++++ |++++|.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~ 38 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDI 38 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEec
Confidence 7999999 999999999999999996 6999984
No 397
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=92.36 E-value=0.38 Score=47.95 Aligned_cols=112 Identities=18% Similarity=0.154 Sum_probs=65.3
Q ss_pred eEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHH-HHHHHHHhhcCCCCCCCcEEEc--CCc----cccCC--CcE
Q psy12825 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRC-KGEMLDLQHGAPFLRSPKIESG--SDI----AMSEG--SRI 248 (488)
Q Consensus 179 KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l-~g~~~dL~~~~~~~~~~~v~~t--td~----eal~d--ADi 248 (488)
||.|+|+ |.+|..++..|+..+...+|+++|...... .....++... ....+... +|+ +.+++ +|+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 76 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDN----PRYRFVKGDIGDRELVSRLFTEHQPDA 76 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccC----CCcEEEEcCCcCHHHHHHHHhhcCCCE
Confidence 6899999 999999999998876434888888632111 1111122110 11122211 122 24555 899
Q ss_pred EEEecccccC--CCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 249 VIITAGVRSL--VGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 249 VIitag~~~k--~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
||.+++.... .......++..|+.-...+++.+.+...+..++.+|
T Consensus 77 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~S 124 (317)
T TIGR01181 77 VVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHIS 124 (317)
T ss_pred EEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence 9999864321 112233456778888888888887764444556554
No 398
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=92.33 E-value=1.1 Score=38.23 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=42.4
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.+.++|.|||+|.+|..-+..|+..|- +|+++....+..+ +. .+.. ...+ +++.++|+||.+.
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA--~v~vis~~~~~~~-------~~------i~~~-~~~~~~~l~~~~lV~~at 68 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGA--KVTVISPEIEFSE-------GL------IQLI-RREFEEDLDGADLVFAAT 68 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTB--EEEEEESSEHHHH-------TS------CEEE-ESS-GGGCTTESEEEE-S
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEECCchhhhh-------hH------HHHH-hhhHHHHHhhheEEEecC
Confidence 356899999999999988888887775 8999998751111 11 1222 1233 5799999999885
No 399
>PRK12367 short chain dehydrogenase; Provisional
Probab=92.33 E-value=0.58 Score=46.08 Aligned_cols=101 Identities=12% Similarity=0.136 Sum_probs=59.4
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCCh-hHHHHHHHHHhhcCCCCCCCcEEE-cCCc----cccCC
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE-DRCKGEMLDLQHGAPFLRSPKIES-GSDI----AMSEG 245 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~-e~l~g~~~dL~~~~~~~~~~~v~~-ttd~----eal~d 245 (488)
+.++.+++.|+|| |.+|..++..|+..|. +|++++.+. +.++. .. +. ....+.. .+|. +.+..
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~---~~-~~----~~~~~~~D~~~~~~~~~~~~~ 79 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSES---ND-ES----PNEWIKWECGKEESLDKQLAS 79 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhh---hc-cC----CCeEEEeeCCCHHHHHHhcCC
Confidence 3445678999999 8999999999999886 899999876 22211 11 10 0111111 1222 24678
Q ss_pred CcEEEEecccccCCCcch---HhhHhhhHH----HHHHHHHHHhc
Q psy12825 246 SRIVIITAGVRSLVGETR---LQLVDRNVK----IFKDLIPKIAK 283 (488)
Q Consensus 246 ADiVIitag~~~k~G~~r---~dll~~N~~----ii~ei~~~I~~ 283 (488)
.|++|.++|.......+. .+.+..|+. +.+.+.+.+.+
T Consensus 80 iDilVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~ 124 (245)
T PRK12367 80 LDVLILNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALN 124 (245)
T ss_pred CCEEEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 999999998643222222 234555654 44555555543
No 400
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=92.30 E-value=0.66 Score=49.45 Aligned_cols=111 Identities=14% Similarity=0.226 Sum_probs=62.5
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhH-HHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccccc
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDR-CKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRS 257 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~-l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~~ 257 (488)
||.|||.|..|.++|..|...|. +|...|.+... .......+... ....+....+.+.+.++|+||.+.+++.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~--~V~~sD~~~~~~~~~~~~~~~~~----~gi~~~~g~~~~~~~~~d~vv~sp~i~~ 74 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGA--EVTVTDLKPNEELEPSMGQLRLN----EGSVLHTGLHLEDLNNADLVVKSPGIPP 74 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCC--EEEEEeCCCCccchhHHHHHhhc----cCcEEEecCchHHhccCCEEEECCCCCC
Confidence 68999999999999998888887 89999975431 11100112111 0123332234456889999999988764
Q ss_pred CCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 258 LVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 258 k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
.. .........+++++.+. +.+.+.. +..+|-+|-...
T Consensus 75 ~~-p~~~~a~~~~i~i~~~~-e~~~~~~-~~~~I~VTGT~G 112 (433)
T TIGR01087 75 DH-PLVQAAAKRGIPVVGDI-ELFLRLV-PLPVVAITGTNG 112 (433)
T ss_pred CC-HHHHHHHHCCCcEEEHH-HHHHhhc-CCCEEEEECCCC
Confidence 31 12222234555655432 2222222 233566665543
No 401
>PRK08589 short chain dehydrogenase; Validated
Probab=92.25 E-value=1.7 Score=42.92 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=66.7
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc----------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA---------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e---------- 241 (488)
++.+++.|+|+ |.+|..++..|+..|. +|++++++ +.++....++.+.. ........ +|.+
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~-~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~ 77 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGA--YVLAVDIA-EAVSETVDKIKSNG---GKAKAYHVDISDEQQVKDFASEIK 77 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCc-HHHHHHHHHHHhcC---CeEEEEEeecCCHHHHHHHHHHHH
Confidence 45568999999 9999999999999886 89999998 66666666665321 01111111 1211
Q ss_pred -ccCCCcEEEEecccccCCC----cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 -MSEGSRIVIITAGVRSLVG----ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 -al~dADiVIitag~~~k~G----~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|.....+ .+. ...+..|+. +.+.+.+.+.+. .+.||+++-
T Consensus 78 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS 141 (272)
T PRK08589 78 EQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSS 141 (272)
T ss_pred HHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCc
Confidence 2345799999998643211 111 122333433 345555555443 256776664
No 402
>PRK09186 flagellin modification protein A; Provisional
Probab=92.22 E-value=1.9 Score=41.65 Aligned_cols=46 Identities=24% Similarity=0.297 Sum_probs=38.8
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
+.++|.|+|+ |.+|..++..|+..|. +|++.+++++.++....++.
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~ 49 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG--IVIAADIDKEALNELLESLG 49 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecChHHHHHHHHHHH
Confidence 4578999999 9999999999999887 89999998887776666664
No 403
>PRK09072 short chain dehydrogenase; Provisional
Probab=92.18 E-value=2.4 Score=41.41 Aligned_cols=74 Identities=23% Similarity=0.330 Sum_probs=50.9
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---ccc---------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IAM--------- 242 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~ea--------- 242 (488)
+.++|.|+|+ |.+|..++..|+.+|. +|++++++++.++....++.. .....+ ...| .+.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~----~~~~~~-~~~D~~d~~~~~~~~~~~~ 76 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPY----PGRHRW-VVADLTSEAGREAVLARAR 76 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhc----CCceEE-EEccCCCHHHHHHHHHHHH
Confidence 4578999998 9999999999999886 899999998877655545421 111111 1122 211
Q ss_pred -cCCCcEEEEecccc
Q psy12825 243 -SEGSRIVIITAGVR 256 (488)
Q Consensus 243 -l~dADiVIitag~~ 256 (488)
+...|+||.+++..
T Consensus 77 ~~~~id~lv~~ag~~ 91 (263)
T PRK09072 77 EMGGINVLINNAGVN 91 (263)
T ss_pred hcCCCCEEEECCCCC
Confidence 35679999998764
No 404
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.17 E-value=0.93 Score=49.44 Aligned_cols=93 Identities=20% Similarity=0.239 Sum_probs=56.7
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dADiVIit 252 (488)
.....||.|+|+|..|.+.+..|...|. ++..+|.+++.++ .+.+. ...+....+ .+.++++|+||.+
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~--~v~~~D~~~~~~~----~l~~~-----g~~~~~~~~~~~~l~~~D~VV~S 77 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFGA--RPTVCDDDPDALR----PHAER-----GVATVSTSDAVQQIADYALVVTS 77 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHH----HHHhC-----CCEEEcCcchHhHhhcCCEEEEC
Confidence 3356799999999999998877777775 8999997655432 12221 112222222 3557899999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHH
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLI 278 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~ 278 (488)
.|+|... ......-..+++++.++-
T Consensus 78 pGi~~~~-p~~~~a~~~gi~v~~~ie 102 (488)
T PRK03369 78 PGFRPTA-PVLAAAAAAGVPIWGDVE 102 (488)
T ss_pred CCCCCCC-HHHHHHHHCCCcEeeHHH
Confidence 8877432 111111234556654433
No 405
>PRK09291 short chain dehydrogenase; Provisional
Probab=92.16 E-value=1.4 Score=42.56 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=48.3
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccC-CCcEE
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSE-GSRIV 249 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~-dADiV 249 (488)
++|.|+|+ |.+|..++..|+..|. ++++.+.+++.++....+.... .....+... +|. .++. +.|+|
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~id~v 77 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARR---GLALRVEKLDLTDAIDRAQAAEWDVDVL 77 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc---CCcceEEEeeCCCHHHHHHHhcCCCCEE
Confidence 47999999 9999999999999886 7888998876555433332221 111122111 222 1233 89999
Q ss_pred EEecccc
Q psy12825 250 IITAGVR 256 (488)
Q Consensus 250 Iitag~~ 256 (488)
|.+++..
T Consensus 78 i~~ag~~ 84 (257)
T PRK09291 78 LNNAGIG 84 (257)
T ss_pred EECCCcC
Confidence 9998764
No 406
>PRK08219 short chain dehydrogenase; Provisional
Probab=92.12 E-value=0.71 Score=43.69 Aligned_cols=70 Identities=17% Similarity=0.150 Sum_probs=45.8
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----ccc---CCC
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMS---EGS 246 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal---~dA 246 (488)
+++|.|+|+ |.+|..++..|+.+ . +|++++++.+.++....++.+ ..+... +|+ +.+ .+.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~~~~~~~~~~~-------~~~~~~D~~~~~~~~~~~~~~~~i 72 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAERLDELAAELPG-------ATPFPVDLTDPEAIAAAVEQLGRL 72 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHHHHHHHHHhcc-------ceEEecCCCCHHHHHHHHHhcCCC
Confidence 468999998 99999999999887 4 799999987655433222211 111111 122 222 269
Q ss_pred cEEEEecccc
Q psy12825 247 RIVIITAGVR 256 (488)
Q Consensus 247 DiVIitag~~ 256 (488)
|+||.+++..
T Consensus 73 d~vi~~ag~~ 82 (227)
T PRK08219 73 DVLVHNAGVA 82 (227)
T ss_pred CEEEECCCcC
Confidence 9999998764
No 407
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=92.11 E-value=4.3 Score=39.72 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=68.0
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---c---------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---I--------- 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~--------- 240 (488)
++.+++.|+|+ |.+|..++..|+..|. ++++.|.+++.++....++.... .++. ...| .
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~ 80 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYRELG-----IEAHGYVCDVTDEDGVQAMVSQ 80 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC-----CceEEEEcCCCCHHHHHHHHHH
Confidence 34578999998 9999999999998886 79999998887776665654321 1111 1112 1
Q ss_pred --cccCCCcEEEEecccccC-C-Cc-ch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCCc
Q psy12825 241 --AMSEGSRIVIITAGVRSL-V-GE-TR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISNPV 297 (488)
Q Consensus 241 --eal~dADiVIitag~~~k-~-G~-~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNPv 297 (488)
+.+...|++|.+++.... + .. +. ...+..|.. +.+.+.+.+.+ ...+.+|+++...
T Consensus 81 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~ 148 (265)
T PRK07097 81 IEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIK-KGHGKIINICSMM 148 (265)
T ss_pred HHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-cCCcEEEEEcCcc
Confidence 123457999999886421 1 11 11 122334433 33444444443 2345677766543
No 408
>PRK06223 malate dehydrogenase; Reviewed
Probab=92.10 E-value=0.041 Score=56.04 Aligned_cols=31 Identities=29% Similarity=0.468 Sum_probs=29.2
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
.||+|||+|.||.++|+.+..+++. |++++|
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D 33 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELG-DVVLFD 33 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEE
Confidence 5999999999999999999999988 999988
No 409
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.08 E-value=0.45 Score=48.34 Aligned_cols=56 Identities=20% Similarity=0.356 Sum_probs=42.8
Q ss_pred CCCCCceEEEEeccc-chHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQ-VGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~-vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIi 251 (488)
-..+.++|+|||+|. +|..+++.|+..+. +|.+++.... ++. +.+++||+||.
T Consensus 155 i~l~Gk~vvViG~gg~vGkpia~~L~~~ga--tVtv~~~~t~-------~L~-----------------~~~~~aDIvI~ 208 (283)
T PRK14192 155 IELAGKHAVVVGRSAILGKPMAMMLLNANA--TVTICHSRTQ-------NLP-----------------ELVKQADIIVG 208 (283)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCCC--EEEEEeCCch-------hHH-----------------HHhccCCEEEE
Confidence 356778999999986 99999999988876 8999886321 111 23479999999
Q ss_pred ecc
Q psy12825 252 TAG 254 (488)
Q Consensus 252 tag 254 (488)
+.|
T Consensus 209 AtG 211 (283)
T PRK14192 209 AVG 211 (283)
T ss_pred ccC
Confidence 986
No 410
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.06 E-value=0.57 Score=50.08 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=49.7
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cC-CCcEEEEec
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SE-GSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~-dADiVIita 253 (488)
+.++|.|+|+|.+|.+.+..|+..|. +|.+.|.+..........+... ..++....+..+ +. ++|+||.+.
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~--~V~~~d~~~~~~~~~~~~l~~~-----g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGA--NVTVNDGKPFSENPEAQELLEE-----GIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCC--EEEEEcCCCccchhHHHHHHhc-----CCEEEeCCCCHHHhcCcCCEEEECC
Confidence 45789999999999999999988887 8999998654333233334331 122322223333 34 499999998
Q ss_pred cccc
Q psy12825 254 GVRS 257 (488)
Q Consensus 254 g~~~ 257 (488)
|++.
T Consensus 77 gi~~ 80 (447)
T PRK02472 77 GIPY 80 (447)
T ss_pred CCCC
Confidence 8764
No 411
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=92.05 E-value=0.73 Score=46.24 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=40.3
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeE-EEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcccc-CCCcEEEEecc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNF-CLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMS-EGSRIVIITAG 254 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el-~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal-~dADiVIitag 254 (488)
++||+|||+|.||..++..+...... ++ .+++.+.. .+.....+. . .+..++|++++ .+.|+||++.+
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~-~l~~v~~~~~~-~~~~~~~~~------~--~~~~~~d~~~l~~~~DvVve~t~ 70 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDL-RVDWVIVPEHS-IDAVRRALG------E--AVRVVSSVDALPQRPDLVVECAG 70 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCc-eEEEEEEcCCC-HHHHhhhhc------c--CCeeeCCHHHhccCCCEEEECCC
Confidence 47999999999999998887765322 33 23343221 111111111 0 23345677665 56999999963
No 412
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=92.05 E-value=0.37 Score=57.06 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=49.7
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCC------------eEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCCcc-
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYS------------NFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSDIA- 241 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~------------el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd~e- 241 (488)
+++||+|||||.||...+..|+...-.. .|.+.|++.++++..+..+... ..+.. .+|++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~------~~v~lDv~D~e~ 641 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENA------EAVQLDVSDSES 641 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCC------ceEEeecCCHHH
Confidence 4679999999999999999998653211 4889999988776554433211 11222 24542
Q ss_pred ---ccCCCcEEEEecc
Q psy12825 242 ---MSEGSRIVIITAG 254 (488)
Q Consensus 242 ---al~dADiVIitag 254 (488)
.++++|+||++..
T Consensus 642 L~~~v~~~DaVIsalP 657 (1042)
T PLN02819 642 LLKYVSQVDVVISLLP 657 (1042)
T ss_pred HHHhhcCCCEEEECCC
Confidence 3578999999964
No 413
>PRK06138 short chain dehydrogenase; Provisional
Probab=92.05 E-value=2.2 Score=41.03 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=37.0
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHH
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL 222 (488)
+.++|.|+|+ |.+|..++..|+..|. +|++++.+.+.++....++
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~ 49 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDAEAAERVAAAI 49 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCHHHHHHHHHHH
Confidence 4578999999 9999999999999886 8999999887666544444
No 414
>PRK05599 hypothetical protein; Provisional
Probab=92.04 E-value=2.7 Score=40.98 Aligned_cols=115 Identities=11% Similarity=0.213 Sum_probs=66.6
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-----------ccc
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-----------AMS 243 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-----------eal 243 (488)
|.+.|+|+ +.+|..++..|+ ++ ..|++.++++++++....++.... ......... +|. +.+
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g--~~Vil~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 75 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HG--EDVVLAARRPEAAQGLASDLRQRG--ATSVHVLSFDAQDLDTHRELVKQTQELA 75 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CC--CEEEEEeCCHHHHHHHHHHHHhcc--CCceEEEEcccCCHHHHHHHHHHHHHhc
Confidence 35789999 889999999988 45 489999999988887777775431 000111111 121 123
Q ss_pred CCCcEEEEecccccCCC---cch---HhhHhhhH----HHHHHHHHHHhccCCCcEEEEEeCCc
Q psy12825 244 EGSRIVIITAGVRSLVG---ETR---LQLVDRNV----KIFKDLIPKIAKGSPDCILLIISNPV 297 (488)
Q Consensus 244 ~dADiVIitag~~~k~G---~~r---~dll~~N~----~ii~ei~~~I~~~~p~a~vIv~TNPv 297 (488)
..-|++|..+|...... .+. .+.+.-|. .+.+.+.+.+.+...++.||+++--.
T Consensus 76 g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~ 139 (246)
T PRK05599 76 GEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIA 139 (246)
T ss_pred CCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 56899999988643211 111 12222232 23344555565544456677776543
No 415
>PRK07035 short chain dehydrogenase; Provisional
Probab=92.02 E-value=1.7 Score=42.14 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=39.7
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
++.++|.|+|+ |.+|..++..|+..|. .|+++|++.+.++....++.+
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~ 54 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKLDGCQAVADAIVA 54 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh
Confidence 34568999998 9999999999998886 899999988877766666654
No 416
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=91.95 E-value=1.6 Score=45.19 Aligned_cols=138 Identities=17% Similarity=0.241 Sum_probs=76.5
Q ss_pred CcEEEEecch-hHHHHH-HHH-HhhhhHHHHHHHHHHH-HhhhCC-------CCCCCCceEEEEecccchHHHHHHHHHc
Q psy12825 131 QKITVVGAGQ-VGMACT-YSI-LTQTMARDAVSTVDRL-LSQVAP-------SIESPDQKITVVGAGQVGMACTYSILTQ 199 (488)
Q Consensus 131 ~ki~vvg~g~-vg~~~a-~~~-~~k~la~eivlid~~~-~~e~~~-------~~~~~~~KIaIIGAG~vG~~ia~~La~~ 199 (488)
..|.|..+.. ..-++| |++ ++-.+++.+...+... .++... ......++|+|||.|.+|..++..+. .
T Consensus 88 ~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~-~ 166 (323)
T PRK15409 88 RKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAH-F 166 (323)
T ss_pred CCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHH-h
Confidence 3555544332 233444 333 2235777777766443 222211 02456789999999999999998764 3
Q ss_pred CCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHH
Q psy12825 200 GIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLI 278 (488)
Q Consensus 200 ~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~ 278 (488)
++.-+|+.+|...... ...+. .+.. .++ +.++.||+|++..... .+|-.++- .
T Consensus 167 ~fgm~V~~~~~~~~~~--~~~~~----------~~~~-~~l~ell~~sDvv~lh~plt-----------~~T~~li~--~ 220 (323)
T PRK15409 167 GFNMPILYNARRHHKE--AEERF----------NARY-CDLDTLLQESDFVCIILPLT-----------DETHHLFG--A 220 (323)
T ss_pred cCCCEEEEECCCCchh--hHHhc----------CcEe-cCHHHHHHhCCEEEEeCCCC-----------hHHhhccC--H
Confidence 4444888888753211 00000 1112 255 4589999999985211 11112221 2
Q ss_pred HHHhccCCCcEEEEEeC
Q psy12825 279 PKIAKGSPDCILLIISN 295 (488)
Q Consensus 279 ~~I~~~~p~a~vIv~TN 295 (488)
+.++...|++++||++-
T Consensus 221 ~~l~~mk~ga~lIN~aR 237 (323)
T PRK15409 221 EQFAKMKSSAIFINAGR 237 (323)
T ss_pred HHHhcCCCCeEEEECCC
Confidence 23444568999999874
No 417
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=91.93 E-value=1.2 Score=50.27 Aligned_cols=109 Identities=13% Similarity=0.145 Sum_probs=69.7
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHc-CCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc--------cc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQ-GIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI--------AM 242 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~-~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~--------ea 242 (488)
+..+.+||.|+|| |.+|++++..|+.. +. +|+.+|++...... +... ...++.. .|. ++
T Consensus 311 ~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~~~~----~~~~----~~~~~~~-gDl~d~~~~l~~~ 379 (660)
T PRK08125 311 SAKRRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDAISR----FLGH----PRFHFVE-GDISIHSEWIEYH 379 (660)
T ss_pred hhhcCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchhhhh----hcCC----CceEEEe-ccccCcHHHHHHH
Confidence 5567889999998 99999999999875 55 89999986543211 1100 0112211 121 24
Q ss_pred cCCCcEEEEecccccC--CCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 243 SEGSRIVIITAGVRSL--VGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 243 l~dADiVIitag~~~k--~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
++++|+||-+++.... ......+++..|+.-...+.+.+.++. . .+|++|
T Consensus 380 l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~-~~V~~S 431 (660)
T PRK08125 380 IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-K-RIIFPS 431 (660)
T ss_pred hcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-C-eEEEEc
Confidence 7899999998764321 122344566778887788888888765 3 344444
No 418
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.93 E-value=0.39 Score=50.07 Aligned_cols=97 Identities=19% Similarity=0.291 Sum_probs=55.0
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC-CCCCCCcEEEcCC-cccc--CCCcEEEEecc
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA-PFLRSPKIESGSD-IAMS--EGSRIVIITAG 254 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~-~~~~~~~v~~ttd-~eal--~dADiVIitag 254 (488)
+|+|+|+|++|...+..+...| ..+|++.|+++++++- +..+.-.. ....... ..... ++.. .++|++|++.|
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~-A~~~~g~~~~~~~~~~-~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLEL-AKEAGGADVVVNPSED-DAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHH-HHHhCCCeEeecCccc-cHHHHHHHHhCCCCCCEEEECCC
Confidence 8999999999986544443344 4689999999999874 43422110 0000000 00000 0122 46999999986
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
.+ + .+-..++-..|.+.+++++-+
T Consensus 248 ~~---------------~---~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 248 SP---------------P---ALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CH---------------H---HHHHHHHHhcCCCEEEEEecc
Confidence 22 1 223334444567777777655
No 419
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=91.91 E-value=0.3 Score=51.15 Aligned_cols=107 Identities=14% Similarity=0.150 Sum_probs=65.6
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCcE
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSRI 248 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dADi 248 (488)
+.+||.|+|+ |.+|+.++..|...|. +|+.+|+..... . ... .+ ...+... +|. +.++++|+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~~~---~---~~~-~~--~~~~~~~Dl~d~~~~~~~~~~~D~ 88 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKNEH---M---SED-MF--CHEFHLVDLRVMENCLKVTKGVDH 88 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEeccccc---c---ccc-cc--cceEEECCCCCHHHHHHHHhCCCE
Confidence 5689999999 9999999999998886 899999753211 0 000 00 0112111 121 24678999
Q ss_pred EEEecccccCCC---cchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 249 VIITAGVRSLVG---ETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 249 VIitag~~~k~G---~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
||-+++.....+ ......+..|+.....+.+.+.+..... +|++|
T Consensus 89 Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~-~V~~S 136 (370)
T PLN02695 89 VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKR-FFYAS 136 (370)
T ss_pred EEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCE-EEEeC
Confidence 999986321111 1123345678888888888877765444 44444
No 420
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=91.90 E-value=3.4 Score=43.84 Aligned_cols=43 Identities=14% Similarity=0.316 Sum_probs=37.5
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHH
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLD 221 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~d 221 (488)
...|.|||.|.||+.++.+++.+|+ .|..|++..++.+....+
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~--~VavyNRt~~ktd~f~~~ 45 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGY--TVAVYNRTTEKTDEFLAE 45 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCc--eEEEEeCCHHHHHHHHHh
Confidence 4579999999999999999999998 899999999888765443
No 421
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=91.88 E-value=0.38 Score=50.85 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=43.5
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~dADiVIit 252 (488)
....++|+|||.|.||+.++..+..-|. +|..+|.... +. .. .. ...+++ .++.||+|++.
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~--~V~~~dp~~~--~~-----~~--------~~-~~~~L~ell~~sDiI~lh 174 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGI--KTLLCDPPRA--DR-----GD--------EG-DFRSLDELVQEADILTFH 174 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCC--EEEEECCccc--cc-----cc--------cc-ccCCHHHHHhhCCEEEEe
Confidence 4577899999999999999998876565 8999996321 00 00 00 113454 47899999987
Q ss_pred c
Q psy12825 253 A 253 (488)
Q Consensus 253 a 253 (488)
.
T Consensus 175 ~ 175 (378)
T PRK15438 175 T 175 (378)
T ss_pred C
Confidence 5
No 422
>PLN02306 hydroxypyruvate reductase
Probab=91.87 E-value=0.59 Score=49.62 Aligned_cols=141 Identities=13% Similarity=0.144 Sum_probs=74.4
Q ss_pred hHHHHH-HHHH-hhhhHHHHHHHHHHHH-hhhC---C----CCCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeC
Q psy12825 141 VGMACT-YSIL-TQTMARDAVSTVDRLL-SQVA---P----SIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDS 210 (488)
Q Consensus 141 vg~~~a-~~~~-~k~la~eivlid~~~~-~e~~---~----~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di 210 (488)
.+.+.| |++. +-.+++.+...++... ++.. . ......++|+|||.|.+|+.+|..+.. ++.-+|..||.
T Consensus 119 ~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~-~fGm~V~~~d~ 197 (386)
T PLN02306 119 LTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDL 197 (386)
T ss_pred CHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHh-cCCCEEEEECC
Confidence 344444 3332 2456777766654422 1110 0 034567899999999999999887642 34348999998
Q ss_pred ChhH-HHHHHHHHhhcC-C-CCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCC
Q psy12825 211 NEDR-CKGEMLDLQHGA-P-FLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSP 286 (488)
Q Consensus 211 ~~e~-l~g~~~dL~~~~-~-~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p 286 (488)
.... ............ . ......+....++ +.++.||+|++..... .++-.++- .+.++...|
T Consensus 198 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt-----------~~T~~lin--~~~l~~MK~ 264 (386)
T PLN02306 198 YQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLD-----------KTTYHLIN--KERLALMKK 264 (386)
T ss_pred CCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCC-----------hhhhhhcC--HHHHHhCCC
Confidence 6531 111111111000 0 0001112223456 4689999999975211 11222222 234445567
Q ss_pred CcEEEEEeC
Q psy12825 287 DCILLIISN 295 (488)
Q Consensus 287 ~a~vIv~TN 295 (488)
++++||++-
T Consensus 265 ga~lIN~aR 273 (386)
T PLN02306 265 EAVLVNASR 273 (386)
T ss_pred CeEEEECCC
Confidence 899999873
No 423
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=91.86 E-value=0.47 Score=47.24 Aligned_cols=98 Identities=19% Similarity=0.235 Sum_probs=63.3
Q ss_pred eEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCC-cEEEEeccc
Q psy12825 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGS-RIVIITAGV 255 (488)
Q Consensus 179 KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dA-DiVIitag~ 255 (488)
+|.|+|+ |.+|..++..|...|. +|+.+|.......... .+.. +. ...+.-.... +.+++. |.||-+++.
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~---~~~~-~~-~~d~~~~~~~~~~~~~~~d~vih~aa~ 74 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL---SGVE-FV-VLDLTDRDLVDELAKGVPDAVIHLAAQ 74 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc---cccc-ee-eecccchHHHHHHHhcCCCEEEEcccc
Confidence 4999997 9999999999999876 8999998665433211 0000 00 0000000111 345566 999999876
Q ss_pred ccCCCcch---HhhHhhhHHHHHHHHHHHhc
Q psy12825 256 RSLVGETR---LQLVDRNVKIFKDLIPKIAK 283 (488)
Q Consensus 256 ~~k~G~~r---~dll~~N~~ii~ei~~~I~~ 283 (488)
...++..+ .++...|+.-.+.+.+...+
T Consensus 75 ~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~ 105 (314)
T COG0451 75 SSVPDSNASDPAEFLDVNVDGTLNLLEAARA 105 (314)
T ss_pred CchhhhhhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 54443322 35778899999999999888
No 424
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.72 E-value=2.7 Score=39.93 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=46.6
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeC-ChhHHHHHHHHHhhcCCCCCCCcEEEcCCc---c--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDS-NEDRCKGEMLDLQHGAPFLRSPKIESGSDI---A-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di-~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~---e-------- 241 (488)
+++++|.|+|| |.+|..++..|+.++. ++++... +.+..+....++.... ....+. ..|. +
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~D~~~~~~v~~~~~~ 77 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSDEEAAEELVEAVEALG---RRAQAV-QADVTDKAALEAAVAA 77 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcC---CceEEE-ECCcCCHHHHHHHHHH
Confidence 45679999999 9999999999999887 6555444 4444443333443211 111111 1222 1
Q ss_pred ---ccCCCcEEEEecccc
Q psy12825 242 ---MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 ---al~dADiVIitag~~ 256 (488)
.+.+.|+||.+++..
T Consensus 78 ~~~~~~~id~vi~~ag~~ 95 (249)
T PRK12825 78 AVERFGRIDILVNNAGIF 95 (249)
T ss_pred HHHHcCCCCEEEECCccC
Confidence 124679999998753
No 425
>PRK06128 oxidoreductase; Provisional
Probab=91.71 E-value=3.5 Score=41.44 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=64.0
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChh--HHHHHHHHHhhcCCCCCCCcEEEcCCc-----------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNED--RCKGEMLDLQHGAPFLRSPKIESGSDI----------- 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e--~l~g~~~dL~~~~~~~~~~~v~~ttd~----------- 240 (488)
++.++|.|+|+ |.+|..++..|+..|. +|++.+.+.+ .++.....+.... ... .....|.
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~Dl~~~~~v~~~~~ 126 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEG---RKA-VALPGDLKDEAFCRQLVE 126 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcC---CeE-EEEecCCCCHHHHHHHHH
Confidence 44578999998 9999999999999886 7888776432 2333333343211 011 1111221
Q ss_pred ---cccCCCcEEEEeccccc--CC--Ccc---hHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeC
Q psy12825 241 ---AMSEGSRIVIITAGVRS--LV--GET---RLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISN 295 (488)
Q Consensus 241 ---eal~dADiVIitag~~~--k~--G~~---r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TN 295 (488)
+.+...|++|..++... .+ ..+ -...+..|+.-...+.+.+..+ .+.+.+|+++-
T Consensus 127 ~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS 192 (300)
T PRK06128 127 RAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS 192 (300)
T ss_pred HHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence 12346899999998642 11 112 2334556655444444444433 23455666653
No 426
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.71 E-value=0.05 Score=56.24 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=30.0
Q ss_pred cEEEEec-chhHHHHHHHHHhhhhHHH-----HHHHHH
Q psy12825 132 KITVVGA-GQVGMACTYSILTQTMARD-----AVSTVD 163 (488)
Q Consensus 132 ki~vvg~-g~vg~~~a~~~~~k~la~e-----ivlid~ 163 (488)
||+|+|+ |.||.++||++..+++++| ++++|.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di 39 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDI 39 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEec
Confidence 8999999 9999999999999999996 999884
No 427
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.67 E-value=4.9 Score=38.49 Aligned_cols=46 Identities=22% Similarity=0.389 Sum_probs=38.0
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
+.+++.|+|+ |.+|..++..|+..|. .|+++|.++++++....++.
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~~~ 50 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQEKLEEAVAECG 50 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence 4568999998 9999999999998886 79999999877766555554
No 428
>PRK08628 short chain dehydrogenase; Provisional
Probab=91.65 E-value=3.3 Score=40.18 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=36.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
++.++|.|+|| |.+|..++..|+.+|. ++++.+.+++.+ ....++.
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~-~~~~~~~ 51 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDD-EFAEELR 51 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhH-HHHHHHH
Confidence 45678999998 9999999999999886 788999887665 3445554
No 429
>PRK08263 short chain dehydrogenase; Provisional
Probab=91.65 E-value=0.66 Score=45.87 Aligned_cols=109 Identities=17% Similarity=0.105 Sum_probs=63.1
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc-----------c
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA-----------M 242 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e-----------a 242 (488)
.++|.|+|| |.+|..++..|+.++. +|++.+.+.+.++.....+... ..+... +|.+ .
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~------~~~~~~D~~~~~~~~~~~~~~~~~ 74 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERGD--RVVATARDTATLADLAEKYGDR------LLPLALDVTDRAAVFAAVETAVEH 74 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhccCC------eeEEEccCCCHHHHHHHHHHHHHH
Confidence 457999998 9999999999998886 8999999887665432222110 111100 1211 1
Q ss_pred cCCCcEEEEecccccCCC---cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 243 SEGSRIVIITAGVRSLVG---ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 243 l~dADiVIitag~~~k~G---~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+...|.||.++|...... .+ -.+.+..|+. +.+.+.+.+++.... .+|+++
T Consensus 75 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~vs 135 (275)
T PRK08263 75 FGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSG-HIIQIS 135 (275)
T ss_pred cCCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEc
Confidence 346799999998653211 11 2233445544 345555555554444 355554
No 430
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=91.63 E-value=0.75 Score=44.75 Aligned_cols=130 Identities=18% Similarity=0.190 Sum_probs=70.7
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh-hHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE-DRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~-e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIita 253 (488)
.+.+||+|||+|.+|.-=+..|+..|- +|+++-... +.+.....+-. ..-+...-+.+.+.++++||.+.
T Consensus 10 l~~k~VlvvGgG~va~rKa~~ll~~ga--~v~Vvs~~~~~el~~~~~~~~-------i~~~~~~~~~~~~~~~~lviaAt 80 (210)
T COG1648 10 LEGKKVLVVGGGSVALRKARLLLKAGA--DVTVVSPEFEPELKALIEEGK-------IKWIEREFDAEDLDDAFLVIAAT 80 (210)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhcCC--EEEEEcCCccHHHHHHHHhcC-------cchhhcccChhhhcCceEEEEeC
Confidence 457899999999999988888888875 777776544 22222211111 11122222446788899999985
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEE-eCCc--hhHHHHHHHhcCCCCCcEEeecCChHHHHHHHH
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLII-SNPV--DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVL 330 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~-TNPv--di~t~~~~k~sg~p~~rViG~gt~lds~R~~~~ 330 (488)
.|-++=+.+++..++++ +.+|+ ..|. |.+.-...+..+ -.|++.|.--+-.+-+.
T Consensus 81 ---------------~d~~ln~~i~~~a~~~~---i~vNv~D~p~~~~f~~Pa~~~r~~----l~iaIsT~G~sP~la~~ 138 (210)
T COG1648 81 ---------------DDEELNERIAKAARERR---ILVNVVDDPELCDFIFPAIVDRGP----LQIAISTGGKSPVLARL 138 (210)
T ss_pred ---------------CCHHHHHHHHHHHHHhC---CceeccCCcccCceecceeeccCC----eEEEEECCCCChHHHHH
Confidence 23334445555555543 23333 3453 443333323222 35666665544344444
Q ss_pred HHHHh
Q psy12825 331 LAQKL 335 (488)
Q Consensus 331 lA~~L 335 (488)
+-+++
T Consensus 139 ir~~I 143 (210)
T COG1648 139 LREKI 143 (210)
T ss_pred HHHHH
Confidence 43333
No 431
>PRK12747 short chain dehydrogenase; Provisional
Probab=91.62 E-value=3.8 Score=39.70 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=34.9
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEe-CChhHHHHHHHHHh
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLID-SNEDRCKGEMLDLQ 223 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~D-i~~e~l~g~~~dL~ 223 (488)
+.+++.|+|+ |.+|.+++..|+..|. +|++.+ .+.+.++....++.
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~ 50 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGA--LVAIHYGNRKEEAEETVYEIQ 50 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcCCCHHHHHHHHHHHH
Confidence 4568899998 9999999999999886 787765 45565655555554
No 432
>PRK07576 short chain dehydrogenase; Provisional
Probab=91.59 E-value=4.7 Score=39.63 Aligned_cols=47 Identities=15% Similarity=0.355 Sum_probs=38.1
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
.+.++|.|+|| |.+|..++..|+..|. +|+++|++++.++....++.
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~ 54 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQ 54 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence 34568999999 9999999999998886 79999998877765555554
No 433
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.57 E-value=0.34 Score=49.68 Aligned_cols=57 Identities=19% Similarity=0.288 Sum_probs=45.4
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEE
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVI 250 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVI 250 (488)
-....++|+|||. |.||..++..|..++. +|.+++.... ++ +..+.||+||
T Consensus 155 i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t~-------------------------~l~e~~~~ADIVI 207 (301)
T PRK14194 155 GDLTGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRST-------------------------DAKALCRQADIVV 207 (301)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCCC-------------------------CHHHHHhcCCEEE
Confidence 4567899999999 5999999999998887 8899875432 33 3467999999
Q ss_pred Eecccc
Q psy12825 251 ITAGVR 256 (488)
Q Consensus 251 itag~~ 256 (488)
.+.|.+
T Consensus 208 savg~~ 213 (301)
T PRK14194 208 AAVGRP 213 (301)
T ss_pred EecCCh
Confidence 998654
No 434
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=91.52 E-value=0.56 Score=49.38 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=45.1
Q ss_pred ceEEEEec-ccchHHHHHHHH-HcCCC-CeEEEEeCChhHHHHHHHHHhhcCCCCC-CCcEEEcCCccccCCCcEEEEec
Q psy12825 178 QKITVVGA-GQVGMACTYSIL-TQGIY-SNFCLIDSNEDRCKGEMLDLQHGAPFLR-SPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La-~~~l~-~el~L~Di~~e~l~g~~~dL~~~~~~~~-~~~v~~ttd~eal~dADiVIita 253 (488)
+||+|+|| |.||+.+...|. ...+. .+++++.... ..+... .+.. ...+...++.+++.+.|+|++++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~--s~g~~~------~f~~~~~~v~~~~~~~~~~~vDivffa~ 72 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQ--LGQAAP------SFGGTTGTLQDAFDIDALKALDIIITCQ 72 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchh--hCCCcC------CCCCCcceEEcCcccccccCCCEEEEcC
Confidence 48999999 999999888887 55553 6888887542 222211 1211 12333333335899999999997
Q ss_pred c
Q psy12825 254 G 254 (488)
Q Consensus 254 g 254 (488)
+
T Consensus 73 g 73 (366)
T TIGR01745 73 G 73 (366)
T ss_pred C
Confidence 5
No 435
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=91.52 E-value=4.6 Score=38.87 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=31.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
++.++|.|+|| |.+|.+++..|+..|. +|++++.+.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~ 39 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSE 39 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCch
Confidence 45678999999 9999999999999887 899999864
No 436
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.50 E-value=0.69 Score=49.94 Aligned_cols=121 Identities=12% Similarity=0.164 Sum_probs=70.3
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHH-HHHHHHHhhcCCCCCCCcEEEcCC-ccccCCCcEEEEec
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRC-KGEMLDLQHGAPFLRSPKIESGSD-IAMSEGSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l-~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dADiVIita 253 (488)
..+||.|+|.|..|.+++..|...|. +|..+|.++... .....++... ...+....+ .+.+.++|+||.+.
T Consensus 13 ~~~~i~v~G~G~sG~a~a~~L~~~G~--~V~~~D~~~~~~~~~~~~~l~~~-----gi~~~~~~~~~~~~~~~dlVV~Sp 85 (458)
T PRK01710 13 KNKKVAVVGIGVSNIPLIKFLVKLGA--KVTAFDKKSEEELGEVSNELKEL-----GVKLVLGENYLDKLDGFDVIFKTP 85 (458)
T ss_pred cCCeEEEEcccHHHHHHHHHHHHCCC--EEEEECCCCCccchHHHHHHHhC-----CCEEEeCCCChHHhccCCEEEECC
Confidence 45799999999999999988888887 899999864311 1112233321 123333333 35578999999998
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch------hHHHHHHH
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD------VLTYISWK 306 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd------i~t~~~~k 306 (488)
+++... .........+++++.++- .+-++. +..+|-+|-... ++++++..
T Consensus 86 gi~~~~-p~~~~a~~~~i~i~s~~e-~~~~~~-~~~vIaITGTnGKTTT~~ll~~iL~~ 141 (458)
T PRK01710 86 SMRIDS-PELVKAKEEGAYITSEME-EFIKYC-PAKVFGVTGSDGKTTTTTLIYEMLKE 141 (458)
T ss_pred CCCCCc-hHHHHHHHcCCcEEechH-Hhhhhc-CCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 776432 112222345666665442 222232 233566665544 55555543
No 437
>PRK09135 pteridine reductase; Provisional
Probab=91.48 E-value=2.8 Score=40.09 Aligned_cols=47 Identities=11% Similarity=0.205 Sum_probs=35.9
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCC-hhHHHHHHHHHhh
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSN-EDRCKGEMLDLQH 224 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~-~e~l~g~~~dL~~ 224 (488)
+.++|.|+|+ |.+|.+++..|+..+. +|++++.+ ++.++....++.+
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~ 53 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNA 53 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHh
Confidence 4468999999 9999999999998886 89999974 4445544444543
No 438
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.38 E-value=1.1 Score=48.47 Aligned_cols=90 Identities=16% Similarity=0.156 Sum_probs=53.2
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
.+.+||.|+|.|.-|.+.+..|. .|. ++.++|.+++.... ..++.+. .+....+.+.+.++|+||.+.|
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~-~g~--~v~v~D~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~d~vV~SPg 72 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQ-NKY--DVIVYDDLKANRDI-FEELYSK-------NAIAALSDSRWQNLDKIVLSPG 72 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHh-CCC--EEEEECCCCCchHH-HHhhhcC-------ceeccCChhHhhCCCEEEECCC
Confidence 34679999999999999888877 454 89999965432221 1222111 1111112245778999999988
Q ss_pred cccCCCcchHhhHhhhHHHHHH
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKD 276 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~e 276 (488)
++... .........+++++.+
T Consensus 73 I~~~~-p~~~~a~~~gi~v~~e 93 (454)
T PRK01368 73 IPLTH-EIVKIAKNFNIPITSD 93 (454)
T ss_pred CCCCC-HHHHHHHHCCCceecH
Confidence 77421 1122223456666543
No 439
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=91.35 E-value=0.61 Score=38.33 Aligned_cols=37 Identities=24% Similarity=0.374 Sum_probs=30.7
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeC
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDS 210 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di 210 (488)
...+.++++|+|+|.+|..++..+...+ ..+|.++|+
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r 55 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR 55 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 3456679999999999999999988875 358999987
No 440
>PRK07877 hypothetical protein; Provisional
Probab=91.30 E-value=1.1 Score=51.16 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=30.3
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeC
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDS 210 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di 210 (488)
+..||.|+|+| +|+.++..|+..|++++|.|+|-
T Consensus 106 ~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~ 139 (722)
T PRK07877 106 GRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADF 139 (722)
T ss_pred hcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcC
Confidence 34699999998 89999999999997679999986
No 441
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=91.27 E-value=0.22 Score=52.36 Aligned_cols=33 Identities=27% Similarity=0.623 Sum_probs=30.1
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
.||+|||+|.+|.++|+.|+..+. +|+++|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~--~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY--QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC--eEEEEeCCC
Confidence 599999999999999999999876 899999864
No 442
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=91.27 E-value=0.9 Score=42.47 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=39.9
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+.++|+|||.|+-|...|.+|-..|+ +|.+-......-...+ -++. | + ..+. |+.+.||+|++..
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~--~V~Vglr~~s~s~~~A--~~~G--f----~---v~~~~eAv~~aDvV~~L~ 68 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGV--NVIVGLREGSASWEKA--KADG--F----E---VMSVAEAVKKADVVMLLL 68 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHHH--HHTT-------E---CCEHHHHHHC-SEEEE-S
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCC--CEEEEecCCCcCHHHH--HHCC--C----e---eccHHHHHhhCCEEEEeC
Confidence 56899999999999999999988888 7776666443111111 1111 1 1 1233 7899999999985
No 443
>PRK12746 short chain dehydrogenase; Provisional
Probab=91.26 E-value=4.1 Score=39.34 Aligned_cols=47 Identities=15% Similarity=0.248 Sum_probs=34.7
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEE-eCChhHHHHHHHHHh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLI-DSNEDRCKGEMLDLQ 223 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~-Di~~e~l~g~~~dL~ 223 (488)
++.++|.|+|+ |.+|..++..|+.+|. ++.+. +.+.+.++....++.
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~~ 52 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREIE 52 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHH
Confidence 34578999998 9999999999998886 66664 566665555444443
No 444
>PRK12937 short chain dehydrogenase; Provisional
Probab=91.22 E-value=3.1 Score=39.79 Aligned_cols=74 Identities=14% Similarity=0.219 Sum_probs=47.0
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCC-hhHHHHHHHHHhhcCCCCCCCcEEE-cCCc-------c----
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSN-EDRCKGEMLDLQHGAPFLRSPKIES-GSDI-------A---- 241 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~-~e~l~g~~~dL~~~~~~~~~~~v~~-ttd~-------e---- 241 (488)
+.++|.|+|+ |.+|+.++..|+.+|. +++++..+ +...+....++.... .++.. ..|. +
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~ 76 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAAG-----GRAIAVQADVADAAAVTRLFDA 76 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhcC-----CeEEEEECCCCCHHHHHHHHHH
Confidence 4578999998 9999999999999987 67777653 333444444443321 11111 1221 1
Q ss_pred ---ccCCCcEEEEecccc
Q psy12825 242 ---MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 ---al~dADiVIitag~~ 256 (488)
.+.+.|+||..+|..
T Consensus 77 ~~~~~~~id~vi~~ag~~ 94 (245)
T PRK12937 77 AETAFGRIDVLVNNAGVM 94 (245)
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 134689999998864
No 445
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=91.20 E-value=0.63 Score=46.07 Aligned_cols=93 Identities=23% Similarity=0.282 Sum_probs=58.6
Q ss_pred eEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCC--CcEEEEecc
Q psy12825 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEG--SRIVIITAG 254 (488)
Q Consensus 179 KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~d--ADiVIitag 254 (488)
||.|+|+ |.+|++++..|...|. +|++++... .|+.+. .+. +.+++ .|+||.+++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-------~d~~~~------------~~~~~~~~~~~~d~vi~~a~ 59 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-------LDLTDP------------EALERLLRAIRPDAVVNTAA 59 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-------cCCCCH------------HHHHHHHHhCCCCEEEECCc
Confidence 6899998 9999999999998876 888887641 111100 011 23444 499999887
Q ss_pred cccCCC--cchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 255 VRSLVG--ETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 255 ~~~k~G--~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
...... ......+..|+.....+++.+.+... .+|++|
T Consensus 60 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S 99 (287)
T TIGR01214 60 YTDVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS 99 (287)
T ss_pred cccccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence 542211 12344566777777888877766543 344444
No 446
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=91.17 E-value=3.2 Score=40.32 Aligned_cols=48 Identities=19% Similarity=0.276 Sum_probs=39.3
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
++.++|.|+|+ |.+|..++..|+..|. ++++.|.+.+.++....++.+
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~ 57 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQ 57 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHh
Confidence 34678999998 9999999999998886 899999988877766666654
No 447
>PRK06482 short chain dehydrogenase; Provisional
Probab=91.17 E-value=3.6 Score=40.53 Aligned_cols=108 Identities=16% Similarity=0.103 Sum_probs=62.3
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc-----------cc
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA-----------MS 243 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e-----------al 243 (488)
++|.|+|+ |.+|..++..|+..|. .|.+++.+++.++........ ...+... +|.+ .+
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~~ 74 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPDALDDLKARYGD------RLWVLQLDVTDSAAVRAVVDRAFAAL 74 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhccC------ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57999998 9999999999998886 799999987765543222111 1111111 1221 13
Q ss_pred CCCcEEEEecccccCCC-c--ch---HhhHhhhHHHHHHHHHHH----hccCCCcEEEEEe
Q psy12825 244 EGSRIVIITAGVRSLVG-E--TR---LQLVDRNVKIFKDLIPKI----AKGSPDCILLIIS 294 (488)
Q Consensus 244 ~dADiVIitag~~~k~G-~--~r---~dll~~N~~ii~ei~~~I----~~~~p~a~vIv~T 294 (488)
.+.|+||.++|...... . +. ...+..|+.-...+.+.+ ++... ..+|+++
T Consensus 75 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~iv~~s 134 (276)
T PRK06482 75 GRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGG-GRIVQVS 134 (276)
T ss_pred CCCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEEc
Confidence 45799999988653211 1 11 233455655444444443 43333 3455554
No 448
>PRK06924 short chain dehydrogenase; Provisional
Probab=91.16 E-value=0.74 Score=44.54 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=29.5
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
++|.|+|+ |.+|..++..|+.++. +|++++.++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~ 35 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE 35 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence 57999998 9999999999999886 899999876
No 449
>PRK12742 oxidoreductase; Provisional
Probab=91.14 E-value=1.3 Score=42.38 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=45.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeC-ChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-------ccc
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDS-NEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-------AMS 243 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di-~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-------eal 243 (488)
++.++|.|+|+ |.+|..++..|+..|. ++++.+. +++.++....++. ...... +|. +.+
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~l~~~~~--------~~~~~~D~~~~~~~~~~~~~~ 73 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAGSKDAAERLAQETG--------ATAVQTDSADRDAVIDVVRKS 73 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHhC--------CeEEecCCCCHHHHHHHHHHh
Confidence 44678999998 9999999999998886 7777765 4444443322221 011110 121 123
Q ss_pred CCCcEEEEecccc
Q psy12825 244 EGSRIVIITAGVR 256 (488)
Q Consensus 244 ~dADiVIitag~~ 256 (488)
...|++|.+++..
T Consensus 74 ~~id~li~~ag~~ 86 (237)
T PRK12742 74 GALDILVVNAGIA 86 (237)
T ss_pred CCCcEEEECCCCC
Confidence 4589999998764
No 450
>PRK08328 hypothetical protein; Provisional
Probab=91.09 E-value=0.26 Score=48.51 Aligned_cols=37 Identities=30% Similarity=0.566 Sum_probs=32.3
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
.+..||+|+|+|.+|+.++..|+..|+ .+|+|+|.|.
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gv-g~i~lvD~D~ 61 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGV-GRILLIDEQT 61 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence 345699999999999999999999987 5899999764
No 451
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=91.07 E-value=1.2 Score=48.15 Aligned_cols=75 Identities=23% Similarity=0.318 Sum_probs=50.7
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcC-CccccCCCcEEEEeccc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS-DIAMSEGSRIVIITAGV 255 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~tt-d~eal~dADiVIitag~ 255 (488)
.+||+|+|.|.-|.+.+..|...|. ++..+|.++.. ...... ... .....+.... +.+.+.++|+||.+.|+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~--~v~v~D~~~~~-~~~~~~-~~~---~~~i~~~~g~~~~~~~~~~d~vV~SPGi 79 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGA--EVTVSDDRPAP-EGLAAQ-PLL---LEGIEVELGSHDDEDLAEFDLVVKSPGI 79 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCC--eEEEEcCCCCc-cchhhh-hhh---ccCceeecCccchhccccCCEEEECCCC
Confidence 7899999999999999999988886 89999987654 211111 100 0111222211 12678999999999887
Q ss_pred ccC
Q psy12825 256 RSL 258 (488)
Q Consensus 256 ~~k 258 (488)
|..
T Consensus 80 ~~~ 82 (448)
T COG0771 80 PPT 82 (448)
T ss_pred CCC
Confidence 643
No 452
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=91.05 E-value=4.4 Score=39.34 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=32.6
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChh
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNED 213 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e 213 (488)
.++.+++.|+|+ |.+|..++..|+..|. +|+++|+++.
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~~ 43 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSEL 43 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCchH
Confidence 355678999999 9999999999999986 8999999753
No 453
>PRK04148 hypothetical protein; Provisional
Probab=90.99 E-value=1.7 Score=39.33 Aligned_cols=65 Identities=14% Similarity=0.209 Sum_probs=45.0
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE----cCCccccCCCcEEEE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES----GSDIAMSEGSRIVII 251 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~----ttd~eal~dADiVIi 251 (488)
+.+||.+||+| -|..++..|...|. +|+.+|++++..+....... .+.. ..+.+=.++||+|..
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~~~---------~~v~dDlf~p~~~~y~~a~liys 83 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF--DVIVIDINEKAVEKAKKLGL---------NAFVDDLFNPNLEIYKNAKLIYS 83 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhCC---------eEEECcCCCCCHHHHhcCCEEEE
Confidence 34799999999 68888888887776 99999999986653221111 1111 122345789998877
Q ss_pred e
Q psy12825 252 T 252 (488)
Q Consensus 252 t 252 (488)
.
T Consensus 84 i 84 (134)
T PRK04148 84 I 84 (134)
T ss_pred e
Confidence 6
No 454
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=90.97 E-value=0.79 Score=50.66 Aligned_cols=72 Identities=21% Similarity=0.259 Sum_probs=49.8
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc--ccCCCcEEEEe
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA--MSEGSRIVIIT 252 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e--al~dADiVIit 252 (488)
.+.+++.|+|+|.+|.++++.|+..|. +|.+++++.++++..+..+.. ......+.. ...++|+||.+
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~--~V~i~nR~~e~a~~la~~l~~--------~~~~~~~~~~~~~~~~diiINt 446 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA--RVVIANRTYERAKELADAVGG--------QALTLADLENFHPEEGMILANT 446 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC--------ceeeHhHhhhhccccCeEEEec
Confidence 445789999999999999999999886 899999998877765544321 112122322 12467888887
Q ss_pred cccc
Q psy12825 253 AGVR 256 (488)
Q Consensus 253 ag~~ 256 (488)
....
T Consensus 447 T~vG 450 (529)
T PLN02520 447 TSVG 450 (529)
T ss_pred ccCC
Confidence 6433
No 455
>PRK07236 hypothetical protein; Provisional
Probab=90.93 E-value=0.27 Score=51.41 Aligned_cols=37 Identities=11% Similarity=0.238 Sum_probs=33.0
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
.|+.++|+|||||..|.+.|..|+..|+ +++++|..+
T Consensus 3 ~~~~~~ViIVGaG~aGl~~A~~L~~~G~--~v~v~E~~~ 39 (386)
T PRK07236 3 HMSGPRAVVIGGSLGGLFAALLLRRAGW--DVDVFERSP 39 (386)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCC--CEEEEecCC
Confidence 3667899999999999999999999987 899999865
No 456
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=90.85 E-value=0.27 Score=51.69 Aligned_cols=34 Identities=21% Similarity=0.535 Sum_probs=30.5
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChh
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNED 213 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e 213 (488)
|+|+|||||.+|.++|+.|+..+. +|+|+|.+..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~--~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGH--EVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC--EEEEEeCCCc
Confidence 589999999999999999999887 8999998653
No 457
>PRK06701 short chain dehydrogenase; Provisional
Probab=90.73 E-value=4 Score=40.96 Aligned_cols=116 Identities=10% Similarity=0.098 Sum_probs=66.5
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChh-HHHHHHHHHhhcCCCCCCCcEE-EcCCc---c------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNED-RCKGEMLDLQHGAPFLRSPKIE-SGSDI---A------ 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e-~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e------ 241 (488)
.++.++|.|+|| |.+|..++..|+..|. +|++++++.+ .++.....+... ..++. ...|. +
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~ 115 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKE-----GVKCLLIPGDVSDEAFCKDAV 115 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhc-----CCeEEEEEccCCCHHHHHHHH
Confidence 344578999998 9999999999999886 8999998753 333333333321 11211 11221 1
Q ss_pred -----ccCCCcEEEEecccccC--C--Ccch---HhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCC
Q psy12825 242 -----MSEGSRIVIITAGVRSL--V--GETR---LQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNP 296 (488)
Q Consensus 242 -----al~dADiVIitag~~~k--~--G~~r---~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNP 296 (488)
.+...|+||.+++.... + ..+. ...+..|+.-...+.+.+.++ .+.+.+|+++.-
T Consensus 116 ~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~ 183 (290)
T PRK06701 116 EETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSI 183 (290)
T ss_pred HHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecc
Confidence 12357999999875321 1 1111 234556655555555554443 344556666643
No 458
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=90.67 E-value=1.3 Score=52.70 Aligned_cols=75 Identities=16% Similarity=0.314 Sum_probs=52.0
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh-------------------hHHHHHHHHHhhcCCCCCCCcEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE-------------------DRCKGEMLDLQHGAPFLRSPKIE 235 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~-------------------e~l~g~~~dL~~~~~~~~~~~v~ 235 (488)
++..+|.|+|+|.+|..++..|+..|+ +.|.|+|-+. .+++.....|+... +..+|.
T Consensus 22 L~~s~VLIiG~gGLG~EiaKnL~laGV-g~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLN---p~V~V~ 97 (1008)
T TIGR01408 22 MAKSNVLISGMGGLGLEIAKNLVLAGV-KSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELN---PYVHVS 97 (1008)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHC---CCceEE
Confidence 345699999999999999999999997 4899999532 24444444444432 234454
Q ss_pred EcC-Cc--cccCCCcEEEEec
Q psy12825 236 SGS-DI--AMSEGSRIVIITA 253 (488)
Q Consensus 236 ~tt-d~--eal~dADiVIita 253 (488)
..+ .. +-+++.|+||.+.
T Consensus 98 ~~~~~l~~e~l~~fdvVV~t~ 118 (1008)
T TIGR01408 98 SSSVPFNEEFLDKFQCVVLTE 118 (1008)
T ss_pred EecccCCHHHHcCCCEEEECC
Confidence 432 22 4588999999984
No 459
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=90.66 E-value=0.4 Score=38.63 Aligned_cols=34 Identities=21% Similarity=0.487 Sum_probs=29.4
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhH
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDR 214 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~ 214 (488)
||+|||+|.+|.-+|..|...+. +++|++..+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~--~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK--EVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS--EEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc--EEEEEeccchh
Confidence 68999999999999999988775 99999985543
No 460
>PRK06153 hypothetical protein; Provisional
Probab=90.64 E-value=0.3 Score=51.68 Aligned_cols=35 Identities=20% Similarity=0.400 Sum_probs=31.0
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
..||+|||+|.+|+.++..|+..|+ .+|+|+|-|.
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GV-geI~LVD~D~ 210 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPV-REIHLFDGDD 210 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCC-CEEEEECCCE
Confidence 4599999999999999999999986 5999999753
No 461
>PRK07074 short chain dehydrogenase; Provisional
Probab=90.60 E-value=0.72 Score=44.87 Aligned_cols=43 Identities=23% Similarity=0.252 Sum_probs=35.6
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHH
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL 222 (488)
++|.|+|+ |.+|..++..|+..|. +|+++|++.+.++....++
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~~~~~~~~~~~ 46 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDAAALAAFADAL 46 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh
Confidence 47999999 9999999999998876 8999999887776555444
No 462
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=90.59 E-value=4 Score=39.25 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=49.7
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc-----------
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA----------- 241 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e----------- 241 (488)
++|.|+|+ |.+|..++..|+.+|. +|++++++.+..+....++.... .++. ...| .+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGEAGAEAAAKVATDAG-----GSVIYLVADVTKEDEIADMIAAAAA 74 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-----CceEEEECCCCCHHHHHHHHHHHHH
Confidence 47999998 9999999999998887 89999998877665554443211 1121 1112 11
Q ss_pred ccCCCcEEEEecccc
Q psy12825 242 MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 al~dADiVIitag~~ 256 (488)
.+.+.|+||..++..
T Consensus 75 ~~~~~d~vi~~a~~~ 89 (255)
T TIGR01963 75 EFGGLDILVNNAGIQ 89 (255)
T ss_pred hcCCCCEEEECCCCC
Confidence 246789999988753
No 463
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=90.59 E-value=1.9 Score=42.88 Aligned_cols=95 Identities=11% Similarity=0.049 Sum_probs=55.5
Q ss_pred chHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCC---cEEEcCCccccCCCcEEEEecccccCCCcchH
Q psy12825 188 VGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSP---KIESGSDIAMSEGSRIVIITAGVRSLVGETRL 264 (488)
Q Consensus 188 vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~---~v~~ttd~eal~dADiVIitag~~~k~G~~r~ 264 (488)
||..++..|...|. +|.++++. +.++.+..+=-......... .+..++|++.+.++|+||++....
T Consensus 2 iG~~~a~~L~~~G~--~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs~-------- 70 (293)
T TIGR00745 2 VGSLYGAYLARAGH--DVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVKAY-------- 70 (293)
T ss_pred chHHHHHHHHhCCC--cEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhhcCCCCEEEEeccch--------
Confidence 67888999988885 89999986 33433211100000000111 223345566688999999996211
Q ss_pred hhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCchhHH
Q psy12825 265 QLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVDVLT 301 (488)
Q Consensus 265 dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvdi~t 301 (488)
-..++.+.+..+ .++..|+.+.|-.+...
T Consensus 71 --------~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~ 100 (293)
T TIGR00745 71 --------QTEEAAALLLPLIGKNTKVLFLQNGLGHEE 100 (293)
T ss_pred --------hHHHHHHHhHhhcCCCCEEEEccCCCCCHH
Confidence 123444455554 56788888889877543
No 464
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.58 E-value=1.7 Score=47.41 Aligned_cols=76 Identities=20% Similarity=0.343 Sum_probs=50.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcC-CccccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS-DIAMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~tt-d~eal~dADiVIita 253 (488)
++.+||.|+|.|..|.++|..|...|. +|..+|.+.... ...+|.... ...++.... +.+.+.++|+||.+.
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~--~v~~~D~~~~~~--~~~~L~~~~---~~~~~~~g~~~~~~~~~~d~vv~sp 77 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA--RLRVADTREAPP--NLAALRAEL---PDAEFVGGPFDPALLDGVDLVALSP 77 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC--EEEEEcCCCCch--hHHHHHhhc---CCcEEEeCCCchhHhcCCCEEEECC
Confidence 345789999999999998888888887 899999755321 112243321 112333322 235678999999998
Q ss_pred cccc
Q psy12825 254 GVRS 257 (488)
Q Consensus 254 g~~~ 257 (488)
+++.
T Consensus 78 ~I~~ 81 (498)
T PRK02006 78 GLSP 81 (498)
T ss_pred CCCC
Confidence 8765
No 465
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=90.57 E-value=5.3 Score=38.94 Aligned_cols=115 Identities=10% Similarity=0.113 Sum_probs=65.4
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeC-ChhHHHHHHHHHhhcCCCCCCCcEE-EcC---Ccc------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDS-NEDRCKGEMLDLQHGAPFLRSPKIE-SGS---DIA------ 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di-~~e~l~g~~~dL~~~~~~~~~~~v~-~tt---d~e------ 241 (488)
.++.+++.|+|+ |.+|..++..|+..+. .+++... +++.++....++.+.. .++. ... |.+
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~Dl~~~~~i~~~~ 76 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKAG-----GEAIAVKGDVTVESDVVNLI 76 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC-----CeEEEEEecCCCHHHHHHHH
Confidence 356679999998 9999999999999886 6777766 3444444444554321 1111 111 211
Q ss_pred -----ccCCCcEEEEecccccCC---CcchH---hhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 -----MSEGSRIVIITAGVRSLV---GETRL---QLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 -----al~dADiVIitag~~~k~---G~~r~---dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..++..... ..+.. ..+..|+. ..+.+.+.+.+....+.+|+++-
T Consensus 77 ~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS 145 (261)
T PRK08936 77 QTAVKEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSS 145 (261)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 134579999998764321 11122 23445533 23445555555544556666654
No 466
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.54 E-value=0.069 Score=55.25 Aligned_cols=33 Identities=18% Similarity=0.049 Sum_probs=30.4
Q ss_pred CcEEEEec-chhHHHHHHHHHhhhhHH-----HHHHHHH
Q psy12825 131 QKITVVGA-GQVGMACTYSILTQTMAR-----DAVSTVD 163 (488)
Q Consensus 131 ~ki~vvg~-g~vg~~~a~~~~~k~la~-----eivlid~ 163 (488)
-||+|+|+ |.||.+++++++.+++++ |++++|.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~ 41 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDI 41 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEc
Confidence 48999999 999999999999999996 9999984
No 467
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=90.50 E-value=0.32 Score=48.18 Aligned_cols=37 Identities=24% Similarity=0.503 Sum_probs=32.1
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
.+..||.|+|+|.+|+.++..|+..|+ .+|+|+|.|.
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gv-g~i~lvD~D~ 58 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGV-GNLTLLDFDT 58 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence 345699999999999999999999986 5899999764
No 468
>PLN02572 UDP-sulfoquinovose synthase
Probab=90.46 E-value=0.91 Score=48.88 Aligned_cols=117 Identities=20% Similarity=0.251 Sum_probs=65.9
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhH-------H---------HHHHHHHhhcCCCCCCCcEE
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDR-------C---------KGEMLDLQHGAPFLRSPKIE 235 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~-------l---------~g~~~dL~~~~~~~~~~~v~ 235 (488)
+..+++||.|+|| |.+|++++..|+.+|. +|+++|..... + ......+.+.. .....+.
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~v~~v 118 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVS--GKEIELY 118 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhh--CCcceEE
Confidence 4556789999998 9999999999999886 89998842110 0 00000111100 0011222
Q ss_pred Ec--CCc----cccC--CCcEEEEecccccCC-Cc-ch---HhhHhhhHHHHHHHHHHHhccCCCcEEEEE
Q psy12825 236 SG--SDI----AMSE--GSRIVIITAGVRSLV-GE-TR---LQLVDRNVKIFKDLIPKIAKGSPDCILLII 293 (488)
Q Consensus 236 ~t--td~----eal~--dADiVIitag~~~k~-G~-~r---~dll~~N~~ii~ei~~~I~~~~p~a~vIv~ 293 (488)
.. .|+ +.++ ++|+||-+++....+ .. +. ...+..|+.-...+.+...+++....+|.+
T Consensus 119 ~~Dl~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~ 189 (442)
T PLN02572 119 VGDICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKL 189 (442)
T ss_pred ECCCCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEE
Confidence 11 122 2344 479999987543211 11 11 223467888888888888777554344443
No 469
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=90.45 E-value=0.77 Score=47.13 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=43.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHH-HHHHHHhhcCCCCCCCcEEEcCCcc------ccCCCc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCK-GEMLDLQHGAPFLRSPKIESGSDIA------MSEGSR 247 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~-g~~~dL~~~~~~~~~~~v~~ttd~e------al~dAD 247 (488)
+++.||+|||+|.+|..++..+.......=+.++|+|++... ..+..+. ... ...+++ ++.+.|
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~G--------i~~-~~~~ie~LL~~~~~~dID 72 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLG--------VAT-SAEGIDGLLAMPEFDDID 72 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcC--------CCc-ccCCHHHHHhCcCCCCCC
Confidence 467899999999999987777765433333567899876331 1122110 011 123332 357899
Q ss_pred EEEEecc
Q psy12825 248 IVIITAG 254 (488)
Q Consensus 248 iVIitag 254 (488)
+|+++.+
T Consensus 73 iVf~AT~ 79 (302)
T PRK08300 73 IVFDATS 79 (302)
T ss_pred EEEECCC
Confidence 9999863
No 470
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.42 E-value=0.32 Score=48.00 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=31.7
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
+..||+|+|+|.+|+.++..|+..|+ .+++|+|-+.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GV-g~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGV-GKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence 45699999999999999999999986 5899999754
No 471
>PRK12743 oxidoreductase; Provisional
Probab=90.29 E-value=4.4 Score=39.42 Aligned_cols=114 Identities=16% Similarity=0.193 Sum_probs=62.5
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEe-CChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc-----------
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLID-SNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA----------- 241 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~D-i~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e----------- 241 (488)
+++|.|+|+ |.+|..++..|+..|. +|++++ .+.+.++....++.... ....+... +|++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEVRSHG---VRAEIRQLDLSDLPEGAQALDKLIQ 76 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHHH
Confidence 357889998 9999999999999886 777775 45555555555554321 11111111 1221
Q ss_pred ccCCCcEEEEecccccCC---Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 MSEGSRIVIITAGVRSLV---GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 al~dADiVIitag~~~k~---G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|+||.+++..... ..+. ...+..|.. +++...+.+.+....+.+|+++.
T Consensus 77 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS 140 (256)
T PRK12743 77 RLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITS 140 (256)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEee
Confidence 134579999998764321 1111 222344443 33434444433333456666665
No 472
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=90.27 E-value=0.91 Score=44.61 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=28.8
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEE-EEeC
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFC-LIDS 210 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~-L~Di 210 (488)
...+.++|+|.|.|.||+.++..|...+. .|+ +.|.
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~--~vv~v~D~ 63 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGA--KVVAVSDS 63 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEECC
Confidence 34567899999999999999999988875 444 5565
No 473
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=90.20 E-value=0.34 Score=46.44 Aligned_cols=37 Identities=16% Similarity=0.405 Sum_probs=32.3
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
.+..||+|+|+|.+|+.++..|+..|+ .+|+++|.+.
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GV-g~i~lvD~d~ 55 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGI-GSLTILDDRT 55 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 345699999999999999999999997 5899999763
No 474
>PRK07791 short chain dehydrogenase; Provisional
Probab=90.18 E-value=5.6 Score=39.80 Aligned_cols=77 Identities=18% Similarity=0.302 Sum_probs=50.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCCh---------hHHHHHHHHHhhcCCCCCCCcEEEcCCc----
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE---------DRCKGEMLDLQHGAPFLRSPKIESGSDI---- 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~---------e~l~g~~~dL~~~~~~~~~~~v~~ttd~---- 240 (488)
++.+.+.|+|+ +.+|..++..|+..|. +|+++|.+. +.++....++.... .... ....|.
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~--~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~-~~~~Dv~~~~ 77 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG---GEAV-ANGDDIADWD 77 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEeeCCccccccccchhHHHHHHHHHHhcC---CceE-EEeCCCCCHH
Confidence 45568889998 9999999999999886 788988765 55655555554321 0011 111121
Q ss_pred ----------cccCCCcEEEEeccccc
Q psy12825 241 ----------AMSEGSRIVIITAGVRS 257 (488)
Q Consensus 241 ----------eal~dADiVIitag~~~ 257 (488)
+.+...|++|.++|...
T Consensus 78 ~v~~~~~~~~~~~g~id~lv~nAG~~~ 104 (286)
T PRK07791 78 GAANLVDAAVETFGGLDVLVNNAGILR 104 (286)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 12456899999988643
No 475
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=90.15 E-value=4 Score=39.70 Aligned_cols=46 Identities=9% Similarity=0.132 Sum_probs=35.1
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHH
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL 222 (488)
.++.++|.|+|| |.+|..++..|+..|. .|++++.+ +.++.....+
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~-~~~~~~~~~~ 58 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHG-TNWDETRRLI 58 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCC-cHHHHHHHHH
Confidence 345678999999 9999999999999887 78999887 3344333334
No 476
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=90.12 E-value=0.36 Score=46.31 Aligned_cols=36 Identities=22% Similarity=0.515 Sum_probs=31.8
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
+..||+|||+|.+|+.++..|+..|+ .+|.|+|-+.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GV-g~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGI-DSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 34699999999999999999999997 5899999753
No 477
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.11 E-value=4.3 Score=39.01 Aligned_cols=46 Identities=11% Similarity=0.265 Sum_probs=34.9
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEE-EeCChhHHHHHHHHHh
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCL-IDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L-~Di~~e~l~g~~~dL~ 223 (488)
+.+++.|+|+ |.+|..++..|+..|. ++++ .+.+.+.++....++.
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~ 50 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGY--DIAVNYARSRKAAEETAEEIE 50 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHH
Confidence 4568999999 9999999999999886 6655 4667766665555554
No 478
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=90.05 E-value=7.1 Score=37.97 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=63.2
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---c---------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---I--------- 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~--------- 240 (488)
++.+.+.|+|+ |.+|..++..|+..|. +|+++|.+.. +....++.... .++. ...| .
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~--~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~ 78 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEP--TETIEQVTALG-----RRFLSLTADLRKIDGIPALLER 78 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcch--HHHHHHHHhcC-----CeEEEEECCCCCHHHHHHHHHH
Confidence 45568889998 8999999999999886 7888887542 22233333211 1111 1112 1
Q ss_pred --cccCCCcEEEEecccccC-C--Ccc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 241 --AMSEGSRIVIITAGVRSL-V--GET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 241 --eal~dADiVIitag~~~k-~--G~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.+...|++|.++|.... + ..+ -.+.+..|.. +.+.+.+.+.+..+.+.+++++.
T Consensus 79 ~~~~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS 145 (253)
T PRK08993 79 AVAEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS 145 (253)
T ss_pred HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence 123468999999886431 1 111 2233445544 33444455544444566766654
No 479
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=90.04 E-value=1 Score=47.00 Aligned_cols=78 Identities=15% Similarity=0.079 Sum_probs=45.4
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh-hcC-CCC------CCCcEEEcCCcc-ccCCCc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ-HGA-PFL------RSPKIESGSDIA-MSEGSR 247 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~-~~~-~~~------~~~~v~~ttd~e-al~dAD 247 (488)
++||+|+|+|.||..++..+....-..=+.+.|.+++.....+.... +.. .++ ....+....+++ .+.++|
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vD 80 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKAD 80 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCC
Confidence 46999999999999988877765433334566766544432222110 100 000 012344445554 467999
Q ss_pred EEEEecc
Q psy12825 248 IVIITAG 254 (488)
Q Consensus 248 iVIitag 254 (488)
+||.+.+
T Consensus 81 VVIdaT~ 87 (341)
T PRK04207 81 IVVDATP 87 (341)
T ss_pred EEEECCC
Confidence 9999864
No 480
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=90.00 E-value=5.6 Score=38.89 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=38.2
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEe-CChhHHHHHHHHHhh
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLID-SNEDRCKGEMLDLQH 224 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~D-i~~e~l~g~~~dL~~ 224 (488)
+.++.++|.|+|| +.+|..++..|+..|. +|++.+ .+++.++....++..
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~ 55 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGV--NIAFTYNSNVEEANKIAEDLEQ 55 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHH
Confidence 3456678999999 9999999999999887 777775 466666666666643
No 481
>PRK06179 short chain dehydrogenase; Provisional
Probab=89.97 E-value=0.46 Score=46.65 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=32.1
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHH
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRC 215 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l 215 (488)
+.++|.|+|+ |.+|..++..|+.+|. +|++.+++++.+
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~ 41 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGY--RVFGTSRNPARA 41 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCChhhc
Confidence 3467999998 9999999999998886 899999987544
No 482
>PRK05993 short chain dehydrogenase; Provisional
Probab=89.93 E-value=0.75 Score=45.66 Aligned_cols=39 Identities=15% Similarity=0.363 Sum_probs=33.1
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHH
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKG 217 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g 217 (488)
+++|.|+|| |.+|..++..|+..|. +|++.+++++.++.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~~~~ 43 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW--RVFATCRKEEDVAA 43 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHH
Confidence 357899999 9999999999998886 89999998876653
No 483
>KOG1208|consensus
Probab=89.91 E-value=0.99 Score=46.57 Aligned_cols=114 Identities=20% Similarity=0.251 Sum_probs=73.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC-------------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD------------- 239 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd------------- 239 (488)
...+.+.|+|+ ..+|..+|..|+.+|. +|++..+|.++.+..+.++.... ...++. ...|
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~Ga--~Vv~~~R~~~~~~~~~~~i~~~~---~~~~i~~~~lDLssl~SV~~fa~~ 107 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRGA--HVVLACRNEERGEEAKEQIQKGK---ANQKIRVIQLDLSSLKSVRKFAEE 107 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhcC---CCCceEEEECCCCCHHHHHHHHHH
Confidence 34566777899 8899999999999995 89999999998888888888621 112221 1112
Q ss_pred c-cccCCCcEEEEecccccCCCcchHh----hHhhhH----HHHHHHHHHHhccCCCcEEEEEe
Q psy12825 240 I-AMSEGSRIVIITAGVRSLVGETRLQ----LVDRNV----KIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 240 ~-eal~dADiVIitag~~~k~G~~r~d----ll~~N~----~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+ +....-|+.|..||+...+.....| .+..|- -+...+...++..+| +-||++|
T Consensus 108 ~~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~-~RIV~vs 170 (314)
T KOG1208|consen 108 FKKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAP-SRIVNVS 170 (314)
T ss_pred HHhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCC-CCEEEEc
Confidence 1 2466789999999976544321111 122232 244556666676666 5555554
No 484
>PRK12862 malic enzyme; Reviewed
Probab=89.91 E-value=1.4 Score=50.90 Aligned_cols=115 Identities=19% Similarity=0.373 Sum_probs=72.2
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCC-CeEEEEeCCh----hH---HHHHHHHHhhcCCCCCCCcEEEcCCc-cccCC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIY-SNFCLIDSNE----DR---CKGEMLDLQHGAPFLRSPKIESGSDI-AMSEG 245 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~-~el~L~Di~~----e~---l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~d 245 (488)
.+..||+|.|||..|.+++..|...|+. .+|+++|..- ++ +......+.+. .. ..++ +++++
T Consensus 191 ~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~------~~---~~~l~e~~~~ 261 (763)
T PRK12862 191 IEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQK------TD---ARTLAEVIEG 261 (763)
T ss_pred hhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhh------cc---cCCHHHHHcC
Confidence 3446999999999999999999988874 5899999621 11 22222233321 11 1355 68999
Q ss_pred CcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch-hHHHHHHHhcCCCCCcEEeec
Q psy12825 246 SRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD-VLTYISWKLSGFPKNRVIGSG 319 (488)
Q Consensus 246 ADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd-i~t~~~~k~sg~p~~rViG~g 319 (488)
+|++|=+.+ +|. +-+++.+.|. ++.+|+-.+||.- +..+-++++++ ..||++|
T Consensus 262 ~~v~iG~s~----~g~-----------~~~~~v~~M~---~~piifalsNP~~E~~p~~a~~~~~---~~i~atG 315 (763)
T PRK12862 262 ADVFLGLSA----AGV-----------LKPEMVKKMA---PRPLIFALANPTPEILPEEARAVRP---DAIIATG 315 (763)
T ss_pred CCEEEEcCC----CCC-----------CCHHHHHHhc---cCCEEEeCCCCcccCCHHHHHHhcC---CEEEEEC
Confidence 998876542 222 1133444443 6888888899974 45566666642 1456554
No 485
>PRK07201 short chain dehydrogenase; Provisional
Probab=89.90 E-value=3.9 Score=45.77 Aligned_cols=77 Identities=14% Similarity=0.197 Sum_probs=53.1
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc--------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA-------- 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e-------- 241 (488)
.++.++|.|+|| |.+|..++..|+..|. +|++++++++.++....++.... ....+ ...| .+
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~-~~~Dv~~~~~~~~~~~~ 441 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNGEALDELVAEIRAKG---GTAHA-YTCDLTDSAAVDHTVKD 441 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CcEEE-EEecCCCHHHHHHHHHH
Confidence 344678999998 9999999999999886 89999999887776666664321 11111 1122 21
Q ss_pred ---ccCCCcEEEEecccc
Q psy12825 242 ---MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 ---al~dADiVIitag~~ 256 (488)
.+...|++|.++|..
T Consensus 442 ~~~~~g~id~li~~Ag~~ 459 (657)
T PRK07201 442 ILAEHGHVDYLVNNAGRS 459 (657)
T ss_pred HHHhcCCCCEEEECCCCC
Confidence 123689999999864
No 486
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=89.81 E-value=1.3 Score=45.15 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=46.8
Q ss_pred CCCceEEEEecccchH-HHHHHHHHcCC-CCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cC--CCcEE
Q psy12825 175 SPDQKITVVGAGQVGM-ACTYSILTQGI-YSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SE--GSRIV 249 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~-~ia~~La~~~l-~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~--dADiV 249 (488)
++++||+|||+|.++. ..+..+...+- ..-+.++|+++++++..+.++.- . ...+|+++ ++ +.|+|
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~------~---~~~~~~~~ll~~~~iD~V 71 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGI------A---KAYTDLEELLADPDIDAV 71 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCC------C---cccCCHHHHhcCCCCCEE
Confidence 4678999999985553 35555655443 35688999999988766555431 1 33457743 44 47999
Q ss_pred EEec
Q psy12825 250 IITA 253 (488)
Q Consensus 250 Iita 253 (488)
+|+.
T Consensus 72 ~Iat 75 (342)
T COG0673 72 YIAT 75 (342)
T ss_pred EEcC
Confidence 9985
No 487
>PLN02686 cinnamoyl-CoA reductase
Probab=89.80 E-value=1.2 Score=46.68 Aligned_cols=108 Identities=11% Similarity=0.111 Sum_probs=62.9
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC---CCCCCcEEEc--CCc----ccc
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP---FLRSPKIESG--SDI----AMS 243 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~---~~~~~~v~~t--td~----eal 243 (488)
..++++|.|+|+ |.+|++++..|+.+|. +|+++..+.+.++.. .++..... ......+... +|. +.+
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i 126 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHEAF 126 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHHHH
Confidence 456789999998 9999999999999987 787766655444322 22211000 0001111111 232 357
Q ss_pred CCCcEEEEecccccCCCc--chHhhHhhhHHHHHHHHHHHhcc
Q psy12825 244 EGSRIVIITAGVRSLVGE--TRLQLVDRNVKIFKDLIPKIAKG 284 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~--~r~dll~~N~~ii~ei~~~I~~~ 284 (488)
+++|.||-+++.....+. ....+...|+.-...+.+.+.+.
T Consensus 127 ~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~ 169 (367)
T PLN02686 127 DGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRT 169 (367)
T ss_pred HhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhc
Confidence 889999977654322221 11234455777777777776654
No 488
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=89.64 E-value=0.23 Score=51.27 Aligned_cols=130 Identities=21% Similarity=0.274 Sum_probs=71.2
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHH-HH-HHHHhhcCCCCCCCcEEEcCC----c-cccCCCcEE
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCK-GE-MLDLQHGAPFLRSPKIESGSD----I-AMSEGSRIV 249 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~-g~-~~dL~~~~~~~~~~~v~~ttd----~-eal~dADiV 249 (488)
...|-|||||-.|+-.|+.++..|+ .|.||...+.+.. ++ ...+..... .+.-+-...++ + ++++-.+-+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv--~V~L~EMRp~k~TpaH~td~fAELVC-SNSlr~~~~~navGlLk~EMR~lgSl 79 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGV--PVILYEMRPVKGTPAHKTDNFAELVC-SNSLRSDALTNAVGLLKAEMRLLGSL 79 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCC--cEEEEEcccccCCCcccccchhhhee-ccccccchhhhhhHHHHHHHHHhhhH
Confidence 4579999999999999999999998 7999987654321 11 001111100 00000000011 1 334444444
Q ss_pred EEe-cccccCC-C----cchHhhHh------hhHHHHHHHHHHHhccCCCcEEEEEeCCc--hhHHHHHHHhcC
Q psy12825 250 IIT-AGVRSLV-G----ETRLQLVD------RNVKIFKDLIPKIAKGSPDCILLIISNPV--DVLTYISWKLSG 309 (488)
Q Consensus 250 Iit-ag~~~k~-G----~~r~dll~------~N~~ii~ei~~~I~~~~p~a~vIv~TNPv--di~t~~~~k~sg 309 (488)
|+. +...+-| | .+|..+-. +|-+.+.-+-+.+...-|++++|++|-|. +-+++-+++.+|
T Consensus 80 ii~~Ad~~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vireEvt~iP~dg~~vIATGPLTs~~La~~i~~ltG 153 (439)
T COG1206 80 IIEAADKHRVPAGGALAVDRDGFSQAVTEKLENHPLIEVIREEVTEIPPDGITVIATGPLTSDALAEKIKELTG 153 (439)
T ss_pred HhhhhhhccCCCCceeeecHhHHHHHHHHHHhcCCCEEEEccccccCCCCCcEEEecCCCCCHHHHHHHHHhhC
Confidence 443 3333322 2 24544322 22222222334555666799999999995 577887877776
No 489
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.63 E-value=1.5 Score=46.73 Aligned_cols=68 Identities=15% Similarity=0.236 Sum_probs=45.7
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cCCCcEEEEecc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SEGSRIVIITAG 254 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~dADiVIitag 254 (488)
...+|.|||.|.+|.++|..|...|. +|..+|.+++.+.. ...+.+. ...+.+. .+++|+||.+.+
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~--~V~g~D~~~~~~~~-~~~~~~~----------~~~~~~~~~~~~dlvV~s~g 68 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGV--YVIGVDKSLEALQS-CPYIHER----------YLENAEEFPEQVDLVVRSPG 68 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCC--EEEEEeCCccccch-hHHHhhh----------hcCCcHHHhcCCCEEEECCC
Confidence 44689999999999999888888886 79999987654331 0001110 0112222 478999999977
Q ss_pred cc
Q psy12825 255 VR 256 (488)
Q Consensus 255 ~~ 256 (488)
.+
T Consensus 69 i~ 70 (418)
T PRK00683 69 IK 70 (418)
T ss_pred CC
Confidence 65
No 490
>PRK06753 hypothetical protein; Provisional
Probab=89.60 E-value=0.36 Score=49.94 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=30.4
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChh
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNED 213 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e 213 (488)
+||+|||||..|.+.|..|...|+ +++++|.+++
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~--~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGH--EVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCc
Confidence 589999999999999999999987 8999997653
No 491
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=89.54 E-value=2.8 Score=43.66 Aligned_cols=34 Identities=15% Similarity=0.373 Sum_probs=27.7
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN 211 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~ 211 (488)
+||+|.|+|.+|..+...|...++..+|.++-+|
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvain 35 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAIN 35 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEec
Confidence 6899999999999988888876554678888554
No 492
>PLN03075 nicotianamine synthase; Provisional
Probab=89.53 E-value=4.7 Score=41.34 Aligned_cols=106 Identities=14% Similarity=0.153 Sum_probs=60.6
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc----cccCCCcEEEE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI----AMSEGSRIVII 251 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~----eal~dADiVIi 251 (488)
.+.+|+-||+|..+.+....++.....+.++-+|++++..+.....+..........++.. .|. ..+.+-|+|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~-~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHT-ADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEE-CchhhcccccCCcCEEEE
Confidence 7789999999997765333333333445899999999877754444422121222233332 232 24678999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEe
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIIS 294 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~T 294 (488)
.+-.. ++ .+-..++.+.+.+. .|++++++-+
T Consensus 202 ~ALi~----~d--------k~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 AALVG----MD--------KEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ecccc----cc--------cccHHHHHHHHHHhcCCCcEEEEec
Confidence 85211 11 01234455555554 6788665555
No 493
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=89.53 E-value=2.8 Score=42.74 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=41.1
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-c--CCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-S--EGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l--~dADiVIita 253 (488)
.||+|||+|.+|...+..+.......=..++|++++... . ...... .... ..++++. + .+.|+|+++.
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~-l--a~A~~~----Gi~~-~~~~~e~ll~~~dIDaV~iaT 72 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDG-L--ARAREL----GVKT-SAEGVDGLLANPDIDIVFDAT 72 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHH-H--HHHHHC----CCCE-EECCHHHHhcCCCCCEEEECC
Confidence 689999999999987777765433333557888876532 1 111111 1112 2345543 2 4789999985
No 494
>PRK08278 short chain dehydrogenase; Provisional
Probab=89.49 E-value=5.2 Score=39.58 Aligned_cols=37 Identities=16% Similarity=0.355 Sum_probs=31.3
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNED 213 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e 213 (488)
++.+++.|+|| |.+|..++..|+..|. +|++++++.+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~ 41 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAE 41 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccc
Confidence 34568999998 9999999999998886 8999998654
No 495
>PRK07856 short chain dehydrogenase; Provisional
Probab=89.44 E-value=2.8 Score=40.64 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=32.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhH
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDR 214 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~ 214 (488)
++.+++.|+|+ |.+|..++..|+..+. +|+++|.+.+.
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~~~ 42 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRAPE 42 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCChhh
Confidence 34678999998 9999999999999887 89999997653
No 496
>PRK08226 short chain dehydrogenase; Provisional
Probab=89.36 E-value=3.6 Score=40.05 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=32.1
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNED 213 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e 213 (488)
++.+++.|+|+ |.+|..++..|+..|. +|++++.+++
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~~ 41 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGA--NLILLDISPE 41 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHH
Confidence 45578999998 9999999999999886 7999999764
No 497
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=89.30 E-value=2.9 Score=41.73 Aligned_cols=108 Identities=18% Similarity=0.184 Sum_probs=62.3
Q ss_pred eEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc----cc--CCCcE
Q psy12825 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA----MS--EGSRI 248 (488)
Q Consensus 179 KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e----al--~dADi 248 (488)
||.|+|| |.+|..++..|+..+. +|+++|............+.+. . ..... ..| .+ .+ .+.|+
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~---~-~~~~~-~~D~~~~~~~~~~~~~~~~d~ 73 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERI---T-RVTFV-EGDLRDRELLDRLFEEHKIDA 73 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhccc---c-ceEEE-ECCCCCHHHHHHHHHhCCCcE
Confidence 6899998 9999999999998886 7888875322111111111110 0 11111 122 21 23 36899
Q ss_pred EEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 249 VIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 249 VIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
||.+++..... .....+.+..|+.....+.+.+.+..... +++++
T Consensus 74 vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~s 120 (328)
T TIGR01179 74 VIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKK-FIFSS 120 (328)
T ss_pred EEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCE-EEEec
Confidence 99998754321 11233456678887777887777665433 34433
No 498
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.29 E-value=7.3 Score=41.80 Aligned_cols=134 Identities=19% Similarity=0.236 Sum_probs=75.4
Q ss_pred CCceEEEEecccchHHHHH-HHHHc--CCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc----cc---cC-
Q psy12825 176 PDQKITVVGAGQVGMACTY-SILTQ--GIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI----AM---SE- 244 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~-~La~~--~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~----ea---l~- 244 (488)
++.+|+++|-+.+|-+... .|+.. .-...+.++|.|..+.. ....+...... ....+....+. ++ ++
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~Ria-AvEQLk~yae~-lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIG-TVQQLQDYVKT-IGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchH-HHHHHHHHhhh-cCCcEEecCCHHHHHHHHHHHHh
Confidence 3568999999777877433 33321 11237889999887643 34444432211 11223222232 12 23
Q ss_pred --CCcEEEEe-cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC--chhHHHHHHHhcCCCCCcEEeec
Q psy12825 245 --GSRIVIIT-AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP--VDVLTYISWKLSGFPKNRVIGSG 319 (488)
Q Consensus 245 --dADiVIit-ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP--vdi~t~~~~k~sg~p~~rViG~g 319 (488)
+.|+||+- +|.. .++...+.++.+.++...|+.++++++-. .+-+..++..+..++...+| +
T Consensus 318 ~~~~DvVLIDTaGRs-----------~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI-~- 384 (436)
T PRK11889 318 EARVDYILIDTAGKN-----------YRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIV-F- 384 (436)
T ss_pred ccCCCEEEEeCcccc-----------CcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEE-E-
Confidence 57999984 4321 14456677787778777888766665421 12344566666666667776 4
Q ss_pred CChHH
Q psy12825 320 TNLDS 324 (488)
Q Consensus 320 t~lds 324 (488)
|-+|.
T Consensus 385 TKLDE 389 (436)
T PRK11889 385 TKFDE 389 (436)
T ss_pred EcccC
Confidence 56665
No 499
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.28 E-value=6.1 Score=39.10 Aligned_cols=75 Identities=13% Similarity=0.184 Sum_probs=47.5
Q ss_pred CCCceEEEEecc---cchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-----------
Q psy12825 175 SPDQKITVVGAG---QVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI----------- 240 (488)
Q Consensus 175 ~~~~KIaIIGAG---~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~----------- 240 (488)
++.+.+.|+||+ .+|..++..|+..|. .|++.|.+. +++....++.... . ... ....|.
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~--~vil~~r~~-~~~~~~~~~~~~~--~-~~~-~~~~Dl~~~~~v~~~~~ 76 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQND-KLKGRVEEFAAQL--G-SDI-VLPCDVAEDASIDAMFA 76 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCC--EEEEEecch-hHHHHHHHHHhcc--C-Cce-EeecCCCCHHHHHHHHH
Confidence 345678899985 699999999999886 789998873 3443444554321 1 111 111221
Q ss_pred ---cccCCCcEEEEecccc
Q psy12825 241 ---AMSEGSRIVIITAGVR 256 (488)
Q Consensus 241 ---eal~dADiVIitag~~ 256 (488)
+.+...|++|..+|..
T Consensus 77 ~~~~~~g~iD~linnAg~~ 95 (262)
T PRK07984 77 ELGKVWPKFDGFVHSIGFA 95 (262)
T ss_pred HHHhhcCCCCEEEECCccC
Confidence 1234579999999864
No 500
>PRK01581 speE spermidine synthase; Validated
Probab=89.27 E-value=5.3 Score=42.22 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=58.0
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC---C-CCCCCcEEE-cCCc----ccc-
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA---P-FLRSPKIES-GSDI----AMS- 243 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~---~-~~~~~~v~~-ttd~----eal- 243 (488)
..++.+|.|||+|. |.. +..++...-..+|.++|+|++.++. +....... . .....++.. ..|- ...
T Consensus 148 h~~PkrVLIIGgGd-G~t-lrelLk~~~v~~It~VEIDpeVIel-Ar~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~ 224 (374)
T PRK01581 148 VIDPKRVLILGGGD-GLA-LREVLKYETVLHVDLVDLDGSMINM-ARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPS 224 (374)
T ss_pred CCCCCEEEEECCCH-HHH-HHHHHhcCCCCeEEEEeCCHHHHHH-HHhccccchhccccCCCCceEEEECcHHHHHHhcC
Confidence 44567999999885 553 3444444445689999999987764 33221110 0 012334433 2342 122
Q ss_pred CCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhc-cCCCcEEEEEeC
Q psy12825 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAK-GSPDCILLIISN 295 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~-~~p~a~vIv~TN 295 (488)
..-|+||+-...|..+.. ..+ .. .++.+.+.+ ..|++++++-++
T Consensus 225 ~~YDVIIvDl~DP~~~~~--~~L--yT----~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 225 SLYDVIIIDFPDPATELL--STL--YT----SELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred CCccEEEEcCCCccccch--hhh--hH----HHHHHHHHHhcCCCcEEEEecC
Confidence 246998887432211111 111 11 444455444 378997665554
Done!