RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12825
(488 letters)
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 480 bits (1237), Expect = e-169
Identities = 185/328 (56%), Positives = 248/328 (75%)
Query: 160 STVDRLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEM 219
+ D+L+ + + P KITVVG G VGMAC SIL + + L+D ED+ KGEM
Sbjct: 2 ALKDQLIVNLLKEEQVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEM 61
Query: 220 LDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIP 279
+DLQHG+ FL++PKI S D +++ S++VIITAG R GE+RL LV RNV IFK +IP
Sbjct: 62 MDLQHGSLFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIP 121
Query: 280 KIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSP 339
+ K SP C LLI+SNPVD+LTY++WK+SGFPKNRVIGSG NLDS RFR L+ ++LG+ P
Sbjct: 122 NVVKYSPQCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHP 181
Query: 340 ESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVI 399
S HG+++GEHGDSSVPVWSGVNVAGV+LK LNP +GT+ D E + +H VV+SAYEVI
Sbjct: 182 LSCHGWVLGEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVI 241
Query: 400 KLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTH 459
KLKGYTSWA+GLSVA ++ +++ N ++H +ST+I+G +GI+E+VFLS+PC++ NG++
Sbjct: 242 KLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISD 301
Query: 460 IINQNLTPDEAEKLRKSAATISQIQKGL 487
++ LTPDE +L+KSA T+ IQK L
Sbjct: 302 VVKVTLTPDEEARLKKSADTLWGIQKEL 329
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 454 bits (1171), Expect = e-160
Identities = 114/313 (36%), Positives = 193/313 (61%), Gaps = 2/313 (0%)
Query: 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE 235
K+ V+GAG VG ++ +GI L D ++R + E+LD+QHG+ F + I+
Sbjct: 6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSID 65
Query: 236 SGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295
D + + +V+ITAG R G++RL+LV V I K ++P + K +P+ I ++I+N
Sbjct: 66 GSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITN 125
Query: 296 PVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSV 355
PVD+ T+++ KL+G P+N++ GSGTNLDS R R L+AQ+ G++ ++VH +I GEHGDS V
Sbjct: 126 PVDIATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEV 185
Query: 356 PVWSGVNVAGVTLKELNPTIGTEQ-DTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVA 414
P+W + GV + + P G + D + +H +V N+AY++I KG T++A+G+S
Sbjct: 186 PLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGKGATNYAIGMSGV 245
Query: 415 SISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLR 474
I +L++TN+I VS++++ HGI ++ +S+P ++ GV + IN ++ E L+
Sbjct: 246 DIIEAVLHDTNRILPVSSMLKDFHGI-SDICMSVPTLLNRQGVNNTINTPVSDKELAALK 304
Query: 475 KSAATISQIQKGL 487
+SA T+ +
Sbjct: 305 RSAETLKETAAQF 317
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 451 bits (1162), Expect = e-158
Identities = 114/309 (36%), Positives = 178/309 (57%), Gaps = 2/309 (0%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS 238
K+ +VG+G VG A Y++ G+ L+D + + D+ H PF + +G
Sbjct: 2 KVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAG- 60
Query: 239 DIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298
EG+R V++ AGV GETRLQL+DRN ++F ++P++ + +P+ +LL+ +NPVD
Sbjct: 61 SYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD 120
Query: 299 VLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVW 358
V+T +++ LSG P RV+GSGT LD+ RFR LLA+ L ++P+SVH +++GEHGDS V VW
Sbjct: 121 VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 359 SGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISH 418
S V GV L E G E+ R+ V +AY +I+ KG T + +G +A +
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 419 TLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAA 478
+L + ++ VS G+ EV LSLP ++ GV + +L+P+E LR+SA
Sbjct: 241 AILTDEKGVYTVSAFTPEVAGV-LEVSLSLPRILGAGGVAGTVYPSLSPEERAALRRSAE 299
Query: 479 TISQIQKGL 487
+ + L
Sbjct: 300 ILKEAAFAL 308
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 450 bits (1161), Expect = e-158
Identities = 118/310 (38%), Positives = 187/310 (60%), Gaps = 2/310 (0%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG 237
K+ ++GAG VG + +++ + + LID +++ GE +D+ HG PF+ + +G
Sbjct: 8 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG 67
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
D + + ++++TAG GETRL L +NV I K++ I K ++L++SNPV
Sbjct: 68 -DYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPV 126
Query: 298 DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPV 357
D++TY+ K SG P +VIGSGT LDS+RFR LL++KLG+ ++VHG+IIGEHGDS +P+
Sbjct: 127 DIITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPL 186
Query: 358 WSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417
WS ++AG + E E+ ++ DV + +IK KG T + + +S+ +I
Sbjct: 187 WSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIV 246
Query: 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477
TLL N N I V T+I G +GI E+V +SLP ++ GV ++ NLTP+E E LR SA
Sbjct: 247 ETLLKNQNTIRTVGTVINGMYGI-EDVAISLPSIVNSEGVQEVLQFNLTPEEEEALRFSA 305
Query: 478 ATISQIQKGL 487
+ ++ +
Sbjct: 306 EQVKKVLNEV 315
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 448 bits (1154), Expect = e-157
Identities = 110/308 (35%), Positives = 180/308 (58%), Gaps = 2/308 (0%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG 237
++ V+GAG VG + ++++ QGI LID+NE + G+ +D HG F P
Sbjct: 7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH 66
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
D + +V+I AG GETRL LVD+N+ IF+ ++ + + L+ +NPV
Sbjct: 67 GDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPV 126
Query: 298 DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPV 357
D+LTY +WK SG P RVIGSGT LD+ RFR LL + ++P++VH +IIGEHGD+ +PV
Sbjct: 127 DILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPV 186
Query: 358 WSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417
WS + + +++L + G E ++ R+ +V ++AY++I+ KG T + + + +A ++
Sbjct: 187 WSQAYIGVMPIRKLVESKGEEAQ-KDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVT 245
Query: 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477
+L+N N I VS + G +G +V++ +P V+ NG+ +I L DE + SA
Sbjct: 246 RAILHNENAILTVSAYLDGLYGE-RDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSA 304
Query: 478 ATISQIQK 485
AT+ +
Sbjct: 305 ATLKSVLA 312
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 445 bits (1148), Expect = e-156
Identities = 122/308 (39%), Positives = 183/308 (59%), Gaps = 2/308 (0%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG 237
K+ ++GAG VG + ++++ QGI +ID N+++ G+++DL HG F P S
Sbjct: 6 NKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
+ + IV I AG GETRL+LV++N+KIFK ++ ++ D I L+ +NPV
Sbjct: 66 GTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPV 125
Query: 298 DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPV 357
D+LTY +WK SG PK RVIGSGT LDS RFR +L++ G +P++V IIGEHGD+ +PV
Sbjct: 126 DILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEHGDTELPV 185
Query: 358 WSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417
WS NV GV + EL E ++ DV N+AY +I+ KG T + + +S+A I+
Sbjct: 186 WSHANVGGVPVSELVEK-NDAYKQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSLARIT 244
Query: 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477
+L+N N I VST + G +G ++V++ +P V+ G+ I NL E E+ SA
Sbjct: 245 KAILHNENSILTVSTYLDGQYGA-DDVYIGVPAVVNRGGIAGITELNLNEKEKEQFLHSA 303
Query: 478 ATISQIQK 485
+ I K
Sbjct: 304 GVLKNILK 311
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 443 bits (1143), Expect = e-155
Identities = 107/310 (34%), Positives = 178/310 (57%), Gaps = 3/310 (0%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG 237
K+ ++G G VG + +S++ Q I +ID + ++ +G+++DL+H P+ +
Sbjct: 7 NKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA 66
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
+ + + +V+I AG GETRL LV +N+KIFK ++ ++ D I L+ +NPV
Sbjct: 67 GEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPV 126
Query: 298 DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPV 357
D+L Y +WK SG PK RVIGSGT LDS RFR+LL++ ++P SV IIGEHGD+ +PV
Sbjct: 127 DILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHGDTELPV 186
Query: 358 WSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417
WS N+AG LK L + ++ ++AY++I+ KG T + + + +A I+
Sbjct: 187 WSHANIAGQPLKTLLEQ--RPEGKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGLARIT 244
Query: 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477
+ N + + VS L++G + E+V++ +P V+ NG+ +++ L +E K SA
Sbjct: 245 EAIFRNEDAVLTVSALLEGEYEE-EDVYIGVPAVINRNGIRNVVEIPLNDEEQSKFAHSA 303
Query: 478 ATISQIQKGL 487
T+ I
Sbjct: 304 KTLKDIMAEA 313
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 441 bits (1138), Expect = e-155
Identities = 119/309 (38%), Positives = 188/309 (60%), Gaps = 3/309 (0%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS 238
KI +VG G+VG + +++L +G LID ++ R +G+ LDL HG PF R I +G
Sbjct: 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG- 60
Query: 239 DIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298
D A +GS +VI+ AGV GETRLQL+ RN ++ K++ ++K +PD I+++++NPVD
Sbjct: 61 DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120
Query: 299 VLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVW 358
VLTY K SG +V GSGT LD+ R R L+AQ G SP SVH ++IGEHGDS VPVW
Sbjct: 121 VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVW 180
Query: 359 SGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISH 418
SG + G+ L+ + + + D++ +AYE+I+ KG T +A+ L+VA I
Sbjct: 181 SGAMIGGIPLQNMCQ-VCQKCDSKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVE 239
Query: 419 TLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAA 478
++ + ++ +S ++ + G+ +++ +S+P + +GV I+ NL +E E RKSA+
Sbjct: 240 SIFFDEKRVLTLSVYLEDYLGV-KDLCISVPVTLGKHGVERILELNLNEEELEAFRKSAS 298
Query: 479 TISQIQKGL 487
+ +
Sbjct: 299 ILKNAINEI 307
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 437 bits (1127), Expect = e-153
Identities = 121/308 (39%), Positives = 194/308 (62%), Gaps = 3/308 (0%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG 237
QK+ +VG G VG + Y+++ QGI ++D +D+ KG+ +DL + PF KI S
Sbjct: 10 QKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSA 69
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
+ + ++ + +V+ITAG GETRL LV++N+KI K ++ I + I L+ +NPV
Sbjct: 70 -EYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPV 128
Query: 298 DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPV 357
D+LTY +WKLSGFPKNRV+GSGT+LD+ RFR +A+ + + SVH +I+GEHGD+ PV
Sbjct: 129 DILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPV 188
Query: 358 WSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417
WS N+ GVT+ E E + V++ DV ++AYE+IKLKG T + + ++A IS
Sbjct: 189 WSHANIGGVTIAEWVKA-HPEIKEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARIS 247
Query: 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477
+LN+ N + +S + G +G+ ++++ P V+ NG+ +I+ LT E E ++KSA
Sbjct: 248 KAILNDENAVLPLSVYMDGQYGL-NDIYIGTPAVINRNGIQNILEIPLTDHEEESMQKSA 306
Query: 478 ATISQIQK 485
+ + ++
Sbjct: 307 SQLKKVLT 314
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 435 bits (1122), Expect = e-152
Identities = 110/308 (35%), Positives = 179/308 (58%), Gaps = 4/308 (1%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG 237
QK+ +VG G VG + +++ QGI F ++D +DR KG+ LDL+ F KI SG
Sbjct: 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSG 65
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
+ + + + +V+ITAG GE+RL LV++N+ I ++ + D I L+ +NPV
Sbjct: 66 -EYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPV 124
Query: 298 DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPV 357
D+LTY +WK SGFPK RVIGSGT+LDS R RV L ++ + P SV +I+GEHGDS
Sbjct: 125 DILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGDSEFAA 184
Query: 358 WSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417
+S + ++++ G ++ +L V N AY++I LKG T + +G ++ IS
Sbjct: 185 YSTATIGTRPVRDVAKEQGVSD--DDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRIS 242
Query: 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477
+L + N + V + G +G+ ++++ P ++ G+ II L+ DE +K++ SA
Sbjct: 243 KAILRDENAVLPVGAYMDGQYGL-NDIYIGTPAIIGGTGLKQIIESPLSADELKKMQDSA 301
Query: 478 ATISQIQK 485
AT+ ++
Sbjct: 302 ATLKKVLN 309
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 428 bits (1102), Expect = e-149
Identities = 108/309 (34%), Positives = 174/309 (56%), Gaps = 8/309 (2%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS 238
K+ VVG G VG ++++ +G S L+D +EDR + E D+ H AP ++ G
Sbjct: 2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHG- 60
Query: 239 DIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298
+ +++VI+TAG GE+RL L+++N IF++L+P+I + +PD +LL+ SNPVD
Sbjct: 61 GHSELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVD 120
Query: 299 VLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVW 358
+LT ++ +L+ P VIGSGT LDS RFR L+AQ G+ HG+++GEHGDS V W
Sbjct: 121 LLTDLATQLA--PGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEHGDSEVLAW 178
Query: 359 SGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISH 418
S VAG+ + + + + ++ N+A +I+ K T + +G ++A I+
Sbjct: 179 SSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEGKRATYYGIGAALARITE 238
Query: 419 TLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAA 478
+L + + VS +G V LSLP V+ GV ++ LT DE +KL +SA
Sbjct: 239 AVLRDRRAVLTVSAPT-PEYG----VSLSLPRVVGRQGVLSTLHPKLTGDEQQKLEQSAG 293
Query: 479 TISQIQKGL 487
+ ++ L
Sbjct: 294 VLRGFKQQL 302
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 426 bits (1099), Expect = e-149
Identities = 86/315 (27%), Positives = 149/315 (47%), Gaps = 14/315 (4%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG 237
+KI ++G G VG A + ++ QG+ ++ ID+NE + K + +D Q L +
Sbjct: 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61
Query: 238 SDIAMSEGSRIVIITAGVRSLV----GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLII 293
+D A + +VI T G L R + + + + + + +L++I
Sbjct: 62 NDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVI 121
Query: 294 SNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDS 353
SNPVDV+T + ++GFP ++VIG+GT LD+ R + + + L P SV G+ +GEHG+S
Sbjct: 122 SNPVDVITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGNS 181
Query: 354 SVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSV 413
WS V V G + L + + + + + V+ KGYTS+ + S
Sbjct: 182 QFVAWSTVRVMGQPIVTL-----ADAGDIDLAAIEEEARKGGFTVLNGKGYTSYGVATSA 236
Query: 414 ASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKL 473
I+ ++ + + VS ++LS P ++ +GV +LT DE EKL
Sbjct: 237 IRIAKAVMADAHAELVVSNRRDDM-----GMYLSYPAIIGRDGVLAETTLDLTTDEQEKL 291
Query: 474 RKSAATISQIQKGLL 488
+S I Q ++
Sbjct: 292 LQSRDYIQQRFDEIV 306
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 410 bits (1056), Expect = e-142
Identities = 155/348 (44%), Positives = 212/348 (60%), Gaps = 42/348 (12%)
Query: 160 STVDRLLSQVAPSIESPDQ-KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGE 218
+ D+L+ +A S E KITVVG VGMA S+L + + L+D ED+ KGE
Sbjct: 3 ALKDKLIGHLATSQEPRSYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGE 62
Query: 219 MLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLI 278
M+DL+HG+ FL + KI SG D ++S GS++V+ITAG R GE+RL LV RNV IFK +I
Sbjct: 63 MMDLEHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFII 122
Query: 279 PKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLS 338
P I K SPDC+ + WKLSG P +R+IGSG NLDS RFR L+ ++LG+
Sbjct: 123 PNIVKHSPDCLKELHPELGTDKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVH 182
Query: 339 PESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEV 398
V G++IG+HGDS VWSG+ A + H DVV+SAYEV
Sbjct: 183 SCLVIGWVIGQHGDSVPSVWSGMWDAKL---------------------HKDVVDSAYEV 221
Query: 399 IKLKGYTSWALGL-----------------SVASISHTLLNNTNKIHAVSTLIQGHHGIE 441
IKLKGYTSWA+GL SVA ++ T++ + ++H VST+++ +GI+
Sbjct: 222 IKLKGYTSWAIGLVVSNPVDVLTYVAWKGCSVADLAQTIMKDLCRVHPVSTMVKDFYGIK 281
Query: 442 EEVFLSLPCVMADNGVTH--IINQNLTPDEAEKLRKSAATISQIQKGL 487
+ VFLSLPCV+ +NG++H I+ L PDE ++L+KSA T+ IQK L
Sbjct: 282 DNVFLSLPCVL-NNGISHCNIVKMKLKPDEEQQLQKSATTLWDIQKDL 328
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 405 bits (1044), Expect = e-141
Identities = 96/312 (30%), Positives = 156/312 (50%), Gaps = 14/312 (4%)
Query: 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLID--SNEDRCKGEMLDLQHGAPFLRSPKIE 235
K++VVGA G VG A Y+I + I +D ED G+ D HG + + ++
Sbjct: 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVR 61
Query: 236 SGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295
G + GS +V+ITAG+ G+TR+ L N I +D+ + + + D I L SN
Sbjct: 62 QG-GYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN 120
Query: 296 PVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSV 355
PVD+L ++ + +VIG G LDS RFR +L+++ ++V G I+GEHGD+ V
Sbjct: 121 PVDLLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQV 180
Query: 356 PVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVAS 415
PV+S V+V G + + +L D+ SA +VI+ KG T W VA
Sbjct: 181 PVFSKVSVDGTDPEF---------SGDEKEQLLGDLQESAMDVIERKGATEWGPARGVAH 231
Query: 416 ISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRK 475
+ +L++T ++ S ++G G E+ +P + NGV I+ +L E + +
Sbjct: 232 MVEAILHDTGEVLPASVKLEGEFGH-EDTAFGVPVSLGSNGVEEIVEWDLDDYEQDLMAD 290
Query: 476 SAATISQIQKGL 487
+A +S +
Sbjct: 291 AAEKLSDQYDKI 302
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 401 bits (1034), Expect = e-139
Identities = 113/311 (36%), Positives = 172/311 (55%), Gaps = 25/311 (8%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG 237
KITVVG G++G+ACT +I +GI L+D +E KG +DL+ P +E
Sbjct: 15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGT-KGATMDLEI----FNLPNVEIS 69
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
D++ S S++VI T ++ L +V NV +F+ L+P + S +LL+ S PV
Sbjct: 70 KDLSASAHSKVVIFTVNSLG-SSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPV 128
Query: 298 DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPV 357
+++TY++WKLS FP NRVIG G NLDS R + ++ L ++IGE G+ V
Sbjct: 129 EIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLT 188
Query: 358 WSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417
WSG + N A E++++KG SW++GLSVA +
Sbjct: 189 WSGQEEVVSH------------------TSQVQLSNRAMELLRVKGQRSWSVGLSVADMV 230
Query: 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDE-AEKLRKS 476
+++NN K+H+VS L +G++ I EVFLSLPC++ NGV+ +I L D EKL+ S
Sbjct: 231 DSIVNNKKKVHSVSALAKGYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSS 290
Query: 477 AATISQIQKGL 487
A++I +Q+ L
Sbjct: 291 ASSIHSLQQQL 301
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 394 bits (1016), Expect = e-137
Identities = 105/310 (33%), Positives = 160/310 (51%), Gaps = 20/310 (6%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL-RSPKIESG 237
K+ VGAG+VG ++ L L+D ED GE +DL H A + + PKI G
Sbjct: 2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG 61
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
+D ++ +GS I+++TAG+ G TRL L +N I KD+ KI + +P+ +L+++NP+
Sbjct: 62 ADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPM 121
Query: 298 DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPV 357
DV+TYI WK SG P+N V G G LDS R + L + +IIGEHGDS
Sbjct: 122 DVMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNI--RRAWIIGEHGDSMFVA 179
Query: 358 WSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417
S + G E + DV A EVIK KG T + +++ +
Sbjct: 180 KSLADFDGEVDWE---------------AVENDVRFVAAEVIKRKGATIFGPAVAIYRMV 224
Query: 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477
++ +T +I S ++QG +GI E V + +P + NG + + L+ +E EKLR SA
Sbjct: 225 KAVVEDTGEIIPTSMILQGEYGI-ENVAVGVPAKLGKNGA-EVADIKLSDEEIEKLRNSA 282
Query: 478 ATISQIQKGL 487
+ + + L
Sbjct: 283 KILRERLEEL 292
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 370 bits (953), Expect = e-127
Identities = 97/312 (31%), Positives = 166/312 (53%), Gaps = 11/312 (3%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRS-PKIESG 237
KITV+GAG VG + + + + L+D E +G+ LD+ P K+
Sbjct: 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS 61
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
+D A + S IVIITAG+ G TR L+ +N I K++ I K S + I++++SNP+
Sbjct: 62 NDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPL 121
Query: 298 DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPV 357
D++T+++W SG PK RVIG LD+ RFR +A +LG+S + ++ ++G HGD+ VPV
Sbjct: 122 DIMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPV 181
Query: 358 WSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTSWALGLSVAS 415
VAG+ + +L P ++ L N E+++ +G +A SV
Sbjct: 182 VKYTTVAGIPISDLLPAETIDK-------LVERTRNGGAEIVEHLKQGSAFYAPASSVVE 234
Query: 416 ISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRK 475
+ +++ + ++ + ++G +GI ++ F+ +P + NGV I NL + + L+K
Sbjct: 235 MVESIVLDRKRVLPCAVGLEGQYGI-DKTFVGVPVKLGRNGVEQIYEINLDQADLDLLQK 293
Query: 476 SAATISQIQKGL 487
SA + + K L
Sbjct: 294 SAKIVDENCKML 305
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 357 bits (920), Expect = e-122
Identities = 87/311 (27%), Positives = 162/311 (52%), Gaps = 10/311 (3%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSP-KIESG 237
K+TV+GAG VG + Q + ++D + +G+ LD++ +P ++
Sbjct: 2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGT 61
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
+D +E S + IITAG+ G +R L+ +N +I + + +GSPD +++++NP+
Sbjct: 62 NDYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPL 121
Query: 298 DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPV 357
DV+TY++++ SGFP NRV+G LD+ RFR +A++L +S V ++G HGD+ VP+
Sbjct: 122 DVMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGHGDTMVPL 181
Query: 358 WSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSW-ALGLSVASI 416
V G+ + +L D + + E++ L G ++W A G + A +
Sbjct: 182 PRYTTVGGIPVPQL-------IDDARIEEIVERTKGAGGEIVDLMGTSAWYAPGAAAAEM 234
Query: 417 SHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKS 476
+ +L + +I + G +G+ +++F+ +P + GV +I +L DE +L+ S
Sbjct: 235 TEAILKDNKRILPCAAYCDGEYGL-DDLFIGVPVKLGAGGVEEVIEVDLDADEKAQLKTS 293
Query: 477 AATISQIQKGL 487
A + L
Sbjct: 294 AGHVHSNLDDL 304
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 345 bits (887), Expect = e-117
Identities = 99/310 (31%), Positives = 162/310 (52%), Gaps = 11/310 (3%)
Query: 180 ITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSP-KIESGS 238
IT++GAG+VGMA ++ +G + LI + +GE LDL H A L +I +
Sbjct: 2 ITILGAGKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSN 60
Query: 239 DIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298
GS IV++TAG+ G TR QL++ N DL KI + D I++I +NPVD
Sbjct: 61 SYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVD 120
Query: 299 VLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVW 358
+TY+ +K +GFP+ RVIG LDS R ++QKLG+S +SV+ ++G HG PV
Sbjct: 121 AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMHGQKMFPVP 180
Query: 359 SGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSW-ALGLSVASIS 417
+V GV L+ L E + ++ VN+ ++ +L+GY+S +
Sbjct: 181 RLSSVGGVPLEHL-------MSKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVLTV 233
Query: 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477
+ ++ +I+ S +QG +G ++ +P V+ +G+ II LT DE K ++
Sbjct: 234 EAIKRDSKRIYPYSLYLQGEYGY-NDIVAEVPAVIGKSGIERIIELPLTEDEKRKFDEAV 292
Query: 478 ATISQIQKGL 487
+ ++ + L
Sbjct: 293 QAVKKLVETL 302
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 341 bits (878), Expect = e-115
Identities = 90/313 (28%), Positives = 148/313 (47%), Gaps = 7/313 (2%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRS-PKIES 236
+KI V+G+GQ+G Y + + ++ L D E +G+ LD+ H S K+
Sbjct: 5 RKIAVIGSGQIGGNIAYIVGKDNL-ADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 237 GSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296
D A GS +VIITA + + R +L+ N +I + + K P+ ++ I+NP
Sbjct: 64 TDDYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNP 123
Query: 297 VDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVP 356
+DV+ K+SG P N+V G LDS RFR +AQ G++ V +IG HGD VP
Sbjct: 124 LDVMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGHGDGMVP 183
Query: 357 VWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTSWALGLSVA 414
S V+V GV L Q+ + + + EV G +A +
Sbjct: 184 ATSSVSVGGVPLSSFIKQGLITQEQID--EIVCHTRIAWKEVADNLKTGTAYFAPAAAAV 241
Query: 415 SISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLR 474
++ L + + S H+G+ + +++ +P ++ NGV I+ +LTP E + L
Sbjct: 242 KMAEAYLKDKKAVVPCSAFCSNHYGV-KGIYMGVPTIIGKNGVEDILELDLTPLEQKLLG 300
Query: 475 KSAATISQIQKGL 487
+S ++ I K L
Sbjct: 301 ESINEVNTISKVL 313
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 341 bits (877), Expect = e-115
Identities = 90/315 (28%), Positives = 158/315 (50%), Gaps = 12/315 (3%)
Query: 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE--DRCKGEMLDLQHGAPFLRSP-KI 234
K+T++GA G+VG A + + + LI ++ +G D+ RS I
Sbjct: 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61
Query: 235 ESGS--DIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLI 292
S ++ + + S +VIIT+GV G +R+ L N KI KIA+ I +
Sbjct: 62 YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-V 120
Query: 293 ISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGD 352
I+NPVDV+TY + S F +N+V G GT+LDS+RF+V +A+ G+ + V IIGEHGD
Sbjct: 121 ITNPVDVMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGD 180
Query: 353 SSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLS 412
S VP+ S ++ G+ +++ + DV ++I+LKG + + +
Sbjct: 181 SMVPLLSATSIGGIPIQKF-----ERFKELPIDEIIEDVKTKGEQIIRLKGGSEFGPAAA 235
Query: 413 VASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEK 472
+ ++ ++NN ++ +S + G +V + +P + +G+ +++ L DE
Sbjct: 236 ILNVVRCIVNNEKRLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSIELDKDEIIA 295
Query: 473 LRKSAATISQIQKGL 487
RKSA I + + +
Sbjct: 296 FRKSAEIIKKYCEEV 310
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 339 bits (872), Expect = e-114
Identities = 78/328 (23%), Positives = 153/328 (46%), Gaps = 13/328 (3%)
Query: 169 VAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF 228
+AP++ +K+ ++G+G +G Y + + ++ L D + +G+ LDL H
Sbjct: 1 MAPALVQRRKKVAMIGSGMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSV 59
Query: 229 LRSPKIESGS--DIAMSEGSRIVIITAGV-----RSLVGETRLQLVDRNVKIFKDLIPKI 281
+ + A G+ VI+TAG+ + +R L+ N KI +++ I
Sbjct: 60 VDTNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNI 119
Query: 282 AKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPES 341
K P +++++NP+D + + + SG P N + G LDS RFR +A L +SP
Sbjct: 120 KKYCPKTFIIVVTNPLDCMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRD 179
Query: 342 VHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL 401
V +IG HGD VP+ + V G +++ + + S E+++
Sbjct: 180 VQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLE--EIAEHTKVSGGEIVRF 237
Query: 402 --KGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTH 459
+G +A S +++ + LN+ ++ S G +G+ +++F+ LP V+ G+
Sbjct: 238 LGQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGL-KDMFIGLPAVIGGAGIER 296
Query: 460 IINQNLTPDEAEKLRKSAATISQIQKGL 487
+I L +E ++ +KS + + K +
Sbjct: 297 VIELELNEEEKKQFQKSVDDVMALNKAV 324
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 339 bits (872), Expect = e-114
Identities = 88/313 (28%), Positives = 151/313 (48%), Gaps = 7/313 (2%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSP-KIES 236
+KI+++GAGQ+G + + + + + D E +G+ LDL H + SP KI
Sbjct: 15 KKISIIGAGQIGSTIALLLGQKDL-GDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG 73
Query: 237 GSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296
++ + S +VIITAGV TR L+ N KI + + K P+ ++ I+NP
Sbjct: 74 ENNYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNP 133
Query: 297 VDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVP 356
+D + Y + SG P N+V G LDS RFR L++ LG+ P V ++G HGD +P
Sbjct: 134 LDAMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGGHGDEMIP 193
Query: 357 VWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTSWALGLSVA 414
+ S V + G+ L + N + E+++L G +A S
Sbjct: 194 LTSSVTIGGILLSDFVEQGKITHSQIN--EIIKKTAFGGGEIVELLKTGSAFYAPAASAV 251
Query: 415 SISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLR 474
+++ L ++ + ST + G + + +F+ +P V+ NG+ ++ NL+ DE
Sbjct: 252 AMAQAYLKDSKSVLVCSTYLTGQYNV-NNLFVGVPVVIGKNGIEDVVIVNLSDDEKSLFS 310
Query: 475 KSAATISQIQKGL 487
KS +I + + L
Sbjct: 311 KSVESIQNLVQDL 323
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 337 bits (867), Expect = e-114
Identities = 89/313 (28%), Positives = 162/313 (51%), Gaps = 7/313 (2%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSP-KIES 236
KI ++G+G +G + + + + L D E +G+ LD+ +P K
Sbjct: 8 NKIALIGSGMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG 66
Query: 237 GSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296
+D A EG+ +VI+TAGV G +R L+ N+K+ + + I K +P+ ++ I+NP
Sbjct: 67 ANDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNP 126
Query: 297 VDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVP 356
+D + + K SG P ++V+G LDS RFR L+++ +S E V F++G HGDS VP
Sbjct: 127 LDAMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLGGHGDSMVP 186
Query: 357 VWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTSWALGLSVA 414
+ VAG+ L +L T QD + ++ + E++ L G +A S
Sbjct: 187 LARYSTVAGIPLPDLVKMGWTSQDKLD--KIIQRTRDGGAEIVGLLKTGSAFYAPAASAI 244
Query: 415 SISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLR 474
++ + L + ++ V+ + G +G+ +++++ +P V+ NGV II +L DE +
Sbjct: 245 QMAESYLKDKKRVLPVAAQLSGQYGV-KDMYVGVPTVIGANGVERIIEIDLDKDEKAQFD 303
Query: 475 KSAATISQIQKGL 487
KS A+++ + +
Sbjct: 304 KSVASVAGLCEAC 316
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 334 bits (859), Expect = e-113
Identities = 78/313 (24%), Positives = 155/313 (49%), Gaps = 12/313 (3%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSP-KIES 236
+KI+++GAG VG + + + + + L+D E +G+ LDL +P ++
Sbjct: 3 KKISIIGAGFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG 61
Query: 237 GSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296
++ A + S ++++T+G G +R L+ N I + I + A SP+ ++++++NP
Sbjct: 62 TNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNP 121
Query: 297 VDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVP 356
+D +TY++ ++SGFPK RVIG LD+ R+R +A + G+S E V ++G HGD VP
Sbjct: 122 LDAMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVP 181
Query: 357 VWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTSWALGLSVA 414
+ ++G+ + E + ++ E++ L G +A + A
Sbjct: 182 LPRFSCISGIPVSEF-------IAPDRLAQIVERTRKGGGEIVNLLKTGSAYYAPAAATA 234
Query: 415 SISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLR 474
+ +L + ++ V+ + G +G+ +++ +P ++ GV I+ L +E L
Sbjct: 235 QMVEAVLKDKKRVMPVAAYLTGQYGL-NDIYFGVPVILGAGGVEKILELPLNEEEMALLN 293
Query: 475 KSAATISQIQKGL 487
SA + L
Sbjct: 294 ASAKAVRATLDTL 306
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 334 bits (858), Expect = e-112
Identities = 84/316 (26%), Positives = 151/316 (47%), Gaps = 10/316 (3%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRS-PKIES 236
KI +VG+G +G I+ + + + L D ++ G+ LD H S K+
Sbjct: 5 AKIVLVGSGMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 237 GSDIAMSEGSRIVIITAGVRSLVGET-----RLQLVDRNVKIFKDLIPKIAKGSPDCILL 291
+ G+ +VI+TAG G++ R L+ N KI ++ I K P+ ++
Sbjct: 64 SNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 123
Query: 292 IISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHG 351
+++NPVDV+ + + SG PKN++IG G LD+ R + ++QKL + P V+ I+G HG
Sbjct: 124 VVTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHG 183
Query: 352 DSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGL 411
+ V + + V G+ L+E + VN+A E++ L A
Sbjct: 184 NKMVLLKRYITVGGIPLQEFINNKLISDAELE--AIFDRTVNTALEIVNLHASPYVAPAA 241
Query: 412 SVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAE 471
++ ++ + L + K+ STL++G +G ++F P V+ NGV +I L +E
Sbjct: 242 AIIEMAESYLKDLKKVLICSTLLEGQYGH-SDIFGGTPVVLGANGVEQVIELQLNSEEKA 300
Query: 472 KLRKSAATISQIQKGL 487
K ++ A +++
Sbjct: 301 KFDEAIAETKRMKALA 316
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 331 bits (850), Expect = e-111
Identities = 89/314 (28%), Positives = 161/314 (51%), Gaps = 8/314 (2%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSP-KIES 236
+KIT+VGAG +G + L + + + L D + G+ LDL P K+
Sbjct: 6 KKITLVGAGNIGGTLAHLALIKQL-GDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRG 64
Query: 237 GSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296
+D E S +VI+TAGV G +R L+ N+K+ + + I P+ ++ I+NP
Sbjct: 65 TNDYKDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNP 124
Query: 297 VDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVP 356
+D++ + K SG P N+++G LDS RFR LA +L +S + V +++G HGD+ VP
Sbjct: 125 LDIMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMGGHGDTMVP 184
Query: 357 VWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTSWALGLSVA 414
+ NVAGV+L++L +Q+ + + + + E++ L G +A +
Sbjct: 185 LTKMSNVAGVSLEQLVKEGKLKQERLD--AIVSRTRSGGGEIVALLKTGSAYYAPAAAGI 242
Query: 415 SISHTLLNNTNKIHAVSTLIQ-GHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKL 473
++ + L + I + ++ G +G++E++F+ +P ++ NGV I ++ E E+L
Sbjct: 243 QMAESFLKDKKMILPCAAKVKAGMYGLDEDLFVGVPTEISANGV-RPIEVEISDKEREQL 301
Query: 474 RKSAATISQIQKGL 487
+ S I + K
Sbjct: 302 QVSINAIKDLNKAA 315
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 328 bits (843), Expect = e-110
Identities = 97/316 (30%), Positives = 163/316 (51%), Gaps = 14/316 (4%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLID--SNEDRCKGEMLDLQHGAPFLRS-PKI 234
+K++V+GAG G + + + + ++ L+D E+ KG+ LD+ +P I
Sbjct: 9 KKVSVIGAGFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASPVQGFDANI 67
Query: 235 ESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294
SD A + S +V+ITAG+ G +R LV N KI K + IAK SP+ I+++++
Sbjct: 68 IGTSDYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT 127
Query: 295 NPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSS 354
NPVD +TY +K +GFPK RVIG LD+ RFR +AQ+L LS + + GF++G HGD
Sbjct: 128 NPVDAMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGHGDDM 187
Query: 355 VPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTSWALGLS 412
VP+ G+ L+ L E + E++ L G +A S
Sbjct: 188 VPLVRYSYAGGIPLETL-------IPKERLEAIVERTRKGGGEIVGLLGNGSAYYAPAAS 240
Query: 413 VASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEK 472
+ ++ +L + ++ ++G +G +++L +P ++ NG+ II L DE E
Sbjct: 241 LVEMTEAILKDQRRVLPAIAYLEGEYGY-SDLYLGVPVILGGNGIEKIIELELLADEKEA 299
Query: 473 LRKSAATISQIQKGLL 488
L +S ++ + K L+
Sbjct: 300 LDRSVESVRNVMKVLV 315
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 214 bits (546), Expect = 2e-65
Identities = 69/314 (21%), Positives = 123/314 (39%), Gaps = 11/314 (3%)
Query: 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG 237
K+T+VGA G +G + + N CL D +G +++H + S
Sbjct: 10 KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSD 69
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLI-ISNP 296
A+ ++ ++ + G G TR L+ N +I L I PDC +I I NP
Sbjct: 70 IKEAL-TDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNP 128
Query: 297 VDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHG-FIIGEHGDSSV 355
D+ ++ SG ++V LDS R + LA+ G+ V G HG+
Sbjct: 129 ADITGLVTLIYSGLKPSQVTT-LAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGHGEQMA 187
Query: 356 PVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSW-ALGLSVA 414
S V G L +L T + L VV +IKL+G +S+ +
Sbjct: 188 VFASTAKVNGTPLTDLIGTDKLTNEQWA--ELKQRVVKGGANIIKLRGRSSFQSPSYVSI 245
Query: 415 SISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPD-EAEKL 473
+ + + G E + +++ + +GV H L + E L
Sbjct: 246 EMIRAAMGGEAFRWPAGCYVNV-PGF-EHIMMAMETTITKDGVKHSDINQLGNEAERAAL 303
Query: 474 RKSAATISQIQKGL 487
++S + +++++ +
Sbjct: 304 KESYSHLAKLRDEV 317
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 163 bits (416), Expect = 7e-47
Identities = 84/323 (26%), Positives = 136/323 (42%), Gaps = 31/323 (9%)
Query: 179 KITVVGA-GQVGMACTYSILTQGIY-SNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES 236
K+ V+GA G +G A + TQ S L D G +DL H ++
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKGFSG 60
Query: 237 GSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296
EG+ +V+I+AGV G R L + N I K+L+ ++AK P + II+NP
Sbjct: 61 EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 297 VDVLTYISW----KLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGD 352
V+ I+ K + KN++ G T LD +R +A+ G P V +IG H
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTT-LDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 353 SS-VPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK-GYTS--WA 408
+ +P+ S V GV+ TEQ+ + + + N+ EV++ K G S +
Sbjct: 180 VTILPLLS--QVPGVSF--------TEQEVADLTK---RIQNAGTEVVEAKAGGGSATLS 226
Query: 409 LGLSVASISHTLLNNTN--KIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIIN-QNL 465
+G + A +L+ + ++G + F S P ++ NGV + L
Sbjct: 227 MGQAAARFGLSLVRALQGEQGVVECAYVEGD--GQYARFFSQPLLLGKNGVEERKSIGTL 284
Query: 466 TPDEAEKLRKSAATI-SQIQKGL 487
+ E L T+ I G
Sbjct: 285 SAFEQNALEGMLDTLKKDIALGE 307
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 162 bits (413), Expect = 3e-46
Identities = 74/327 (22%), Positives = 122/327 (37%), Gaps = 31/327 (9%)
Query: 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPK 233
+P K+ ++GA G +G + + S L D G D+ H
Sbjct: 6 APGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHMDTGAVVRG 63
Query: 234 IESGSDIAMS-EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLI 292
+ + G ++I+ AGV G TR L N I K L IAK P I+ +
Sbjct: 64 FLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNL 123
Query: 293 ISNPVDVLTYIS----WKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIG 348
ISNPV+ I+ K + R++G LD +R +A+ LGL P V ++G
Sbjct: 124 ISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTM-LDVVRANTFVAEVLGLDPRDVDVPVVG 182
Query: 349 EH-GDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK-GYTS 406
H G + +P+ S V T+++ + N EV++ K G S
Sbjct: 183 GHAGVTILPLLSQVKPPSSF---------TQEEISYLTD---RIQNGGTEVVEAKAGAGS 230
Query: 407 --WALGLSVASISHTLLNNTNKIHAV--STLIQGHHGIEEEVFLSLPCVMADNGVTHIIN 462
++ + + L V + E F + + NG+ + +
Sbjct: 231 ATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVT--ELPFFASKVRLGRNGIEEVYS 288
Query: 463 -QNLTPDEAEKLRKSAATI-SQIQKGL 487
L E L K+ + I+KG+
Sbjct: 289 LGPLNEYERIGLEKAKKELAGSIEKGV 315
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 161 bits (410), Expect = 6e-46
Identities = 72/324 (22%), Positives = 120/324 (37%), Gaps = 35/324 (10%)
Query: 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLR-SPKIES 236
K+ V+GA G +G + + + S L D G DL H +
Sbjct: 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT--PGVAADLSHIETRATVKGYLGP 59
Query: 237 GSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296
+G +V+I AGV G TR L + N I L A+ PD ++ IISNP
Sbjct: 60 EQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP 119
Query: 297 VDVLTYISW----KLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEH-G 351
V+ I+ K + N++ G T LD +R +A+ GL P V +IG H G
Sbjct: 120 VNSTIPITAEVFKKHGVYNPNKIFGVTT-LDIVRANAFVAELKGLDPARVSVPVIGGHAG 178
Query: 352 DSSVPVWSGVNVAG-VTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKG------Y 404
+ +P+ S +L+ G Q + EV+K K
Sbjct: 179 KTIIPLISQCTPKVDFPQDQLSTLTGRIQ-------------EAGTEVVKAKAGAGSATL 225
Query: 405 TSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIIN-Q 463
+ G +N + S + + S P ++ G+ +
Sbjct: 226 SMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCP---YFSTPLLLGKKGIEKNLGIG 282
Query: 464 NLTPDEAEKLRKSAATI-SQIQKG 486
++P E + + ++ + + I+KG
Sbjct: 283 KISPFEEKMIAEAIPELKASIKKG 306
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 149 bits (378), Expect = 3e-41
Identities = 57/317 (17%), Positives = 116/317 (36%), Gaps = 25/317 (7%)
Query: 179 KITVVGA-GQVGMACTYSILTQGIYS-----NFCLID----SNEDRCKGEMLDLQHGA-P 227
++ V GA GQ+ + + I + L++ + +G M+++ A P
Sbjct: 7 RVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFP 66
Query: 228 FLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAK-GSP 286
L + A + + + ++ G R L++ N +IF I S
Sbjct: 67 LLAGMTAHADPMTAF-KDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASR 125
Query: 287 DCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFI 346
+ +L++ NP + YI+ K + + + LD R +A K G S+
Sbjct: 126 NIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLF 185
Query: 347 I-GEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTEN-FVRLHADVVNSAYEVIKLKGY 404
+ G H + + + G ++K++ I + + F+ V +I +G
Sbjct: 186 VWGNHSPTMYADYRYAQIDGASVKDM---INDDAWNRDTFL---PTVGKRGAAIIDARGV 239
Query: 405 TSWALGLSVASISHT---LLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHII 461
+S A + A+I H +L K + G +GI E V P + +
Sbjct: 240 SSAASA-ANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQ 298
Query: 462 NQNLTPDEAEKLRKSAA 478
++ E++ +
Sbjct: 299 GLSIDAFSQERINVTLN 315
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 147 bits (373), Expect = 2e-40
Identities = 63/318 (19%), Positives = 116/318 (36%), Gaps = 23/318 (7%)
Query: 179 KITVVGA-GQVGMACTYSILTQGIYS-----NFCLIDS--NEDRCKGEMLDLQHGA-PFL 229
++ V GA GQ+ + YSI ++ L+D G +++LQ A P L
Sbjct: 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL 64
Query: 230 RSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSP-DC 288
+ +IA + + I+ + G R L+ NVKIFK + K +
Sbjct: 65 KDVIATDKEEIAF-KDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSV 123
Query: 289 ILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFII- 347
++++ NP + + K + T LD R + +A KLG++ + V II
Sbjct: 124 KVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIW 183
Query: 348 GEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQD--TENFVRLHADVVNSAYEVIKLKGYT 405
G H + P + V + + F+ V VIK + +
Sbjct: 184 GNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFI---TTVQQRGAAVIKARKLS 240
Query: 406 SWALGLSVASISH----TLLNNTNKIHAVSTLIQGHH-GIEEEVFLSLPCVMADNGVTHI 460
S + A H + ++ + G+ G+ +++ S P + D +
Sbjct: 241 SAMSA-AKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIV 299
Query: 461 INQNLTPDEAEKLRKSAA 478
+ EK+ +A
Sbjct: 300 EGLPINDFSREKMDLTAK 317
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 145 bits (367), Expect = 1e-39
Identities = 66/317 (20%), Positives = 126/317 (39%), Gaps = 27/317 (8%)
Query: 179 KITVVGA-GQVGMACTYSILTQGIYS-----NFCLIDS--NEDRCKGEMLDLQHGA-PFL 229
++ V GA GQ+G + + I + L++ +G +++L+ A P L
Sbjct: 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL 65
Query: 230 RSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSP-D 287
+E+ D + + ++ G R L+ N KIF + +A+ + D
Sbjct: 66 AG--LEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKD 123
Query: 288 CILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFII 347
+L++ NP + I++K + R + T LD R + LA+K G + + +
Sbjct: 124 VKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTV 183
Query: 348 -GEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTS 406
G H + P V G EL + E + F+ V +I+ +G +S
Sbjct: 184 WGNHSSTMFPDLFHAEVDGRPALEL---VDMEWYEKVFIPT---VAQRGAAIIQARGASS 237
Query: 407 WALGLSVASISH----TLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHII- 461
A + A+I H L +++ QG +GI E + S P A +G ++
Sbjct: 238 AASA-ANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVT-AKDGAYRVVE 295
Query: 462 NQNLTPDEAEKLRKSAA 478
+ +++ +A
Sbjct: 296 GLEINEFARKRMEITAQ 312
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 146 bits (369), Expect = 2e-39
Identities = 67/316 (21%), Positives = 120/316 (37%), Gaps = 22/316 (6%)
Query: 179 KITVVGA-GQVGMACTYSILTQGIY---SNFCL----IDSNEDRCKGEMLDLQHGA-PFL 229
I V GA G + + + + ++ L + + +G ++L+ P L
Sbjct: 34 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLL 93
Query: 230 RSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAK-GSPDC 288
R I E ++ G R L+D N +IF D + S +
Sbjct: 94 REVSIGIDPYEVF-EDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNV 152
Query: 289 ILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFII- 347
+L++ NP + I K + + + T LD R + LA K G+ + V I
Sbjct: 153 KVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIW 212
Query: 348 GEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSW 407
G H + VP + + G +KE+ I + E V +I+ G +S
Sbjct: 213 GNHSTTQVPDFLNAKIDGRPVKEV---IKRTKWLEE--EFTITVQKRGGALIQKWGRSSA 267
Query: 408 AL-GLSVASISHTLLNNTN--KIHAVSTLIQGHH-GIEEEVFLSLPCVMADNGVTHII-N 462
A +S+A +L+ T + G+ GI E++ S+PC +G + +
Sbjct: 268 ASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATD 327
Query: 463 QNLTPDEAEKLRKSAA 478
+ E+++KS A
Sbjct: 328 VSNDDFLWERIKKSEA 343
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 80.7 bits (198), Expect = 4e-16
Identities = 80/582 (13%), Positives = 166/582 (28%), Gaps = 189/582 (32%)
Query: 30 LSSKAENIIRGLTEGTET------AKALSSRNRGGRQDRRKPAVPRTL--SGQDKICPGL 81
L SK E +++ E + + R P++ + +D+ L
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-------PSMMTRMYIEQRDR----L 119
Query: 82 ESNPQPSAYKTDAPPTKLARLATSTMARDAVSTVDRLLSQVAPSIESPDQKITVVGAGQV 141
++ Q ++RL R A L ++ P + + + G
Sbjct: 120 YNDNQV------FAKYNVSRLQPYLKLRQA-------LLEL-----RPAKNVLIDG---- 157
Query: 142 GMA-CTYSILTQTMARDAVSTVDRLLSQVAPSI--------ESPDQKITVVGAGQVGMAC 192
+ + + + ++ ++ I SP+ + ++ +
Sbjct: 158 -VLGSGKTWVALDVCLS-----YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 193 TYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL-----RSPKIESGSDIAMSEGSR 247
++ + + I S + + + + L ++ K + ++ +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL----SCK 267
Query: 248 IVIIT--AGV-RSLVGETRLQLV----------DRNVKIF--------KDLIPKIAKGSP 286
I++ T V L T + D + +DL ++ +P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 287 DCILLI---ISNPVDVLTYISWKLSGFPK-NRVIGSG-TNLDSMRFRVLLAQKLGLSPES 341
+ +I I + + WK K +I S L+ +R + +L + P S
Sbjct: 328 RRLSIIAESIRDGLATWDN--WKHVNCDKLTTIIESSLNVLEPAEYRKMF-DRLSVFPPS 384
Query: 342 VHGFIIGEHGDSSVP------VWSGV--NVAGVTLKEL-----------NPTIG------ 376
H +P +W V + V + +L TI
Sbjct: 385 AH-----------IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 377 -TEQDTENFVRLHADVVNSAYEVIK-----------LKGYTSWALG--LSVASISH--TL 420
+ EN LH +V+ Y + K L Y +G L TL
Sbjct: 434 ELKVKLENEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 421 LNNT--------NKIHAVSTL--------------------IQGHHGIEEEV------FL 446
KI ST I + E + FL
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 447 SLP---CVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQK 485
+ + T ++ L ++ E + + A Q+Q+
Sbjct: 553 PKIEENLICSKY--TDLLRIALMAED-EAIFEEAHK--QVQR 589
Score = 39.5 bits (91), Expect = 0.003
Identities = 35/259 (13%), Positives = 77/259 (29%), Gaps = 60/259 (23%)
Query: 259 VGETRLQ---LVDRNVKIF-KDL----IPKIAKG---SPDC-ILLIISNPVDVLTYISWK 306
GE + Q ++ F + + + K + +++ + V + W
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 307 LSGFPKNRV---IGSGTNLDSMRFRVLLA--QKLGLSPESVHGFIIGEHGD--SSVPVWS 359
L + V + ++ ++ L++ + P + I + + V++
Sbjct: 71 LLSKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 360 GVNVAGV--------TLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGL 411
NV+ + L EL P V + + G + L
Sbjct: 128 KYNVSRLQPYLKLRQALLELRP--------AKNVLIDG-----------VLGSGKTWVAL 168
Query: 412 SVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLT--PDE 469
V KI ++ + E V L + + I+ N T D
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNL---KNCNSPETVLEML------QKLLYQIDPNWTSRSDH 219
Query: 470 AEKLRKSAATISQIQKGLL 488
+ ++ +I + LL
Sbjct: 220 SSNIKLRIHSIQAELRRLL 238
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 5e-08
Identities = 69/339 (20%), Positives = 111/339 (32%), Gaps = 104/339 (30%)
Query: 78 CP--GLESNPQPSAYKTDA-----PPTKLARL--ATSTMARDAVSTVDRLLSQVAPSIES 128
CP G+ Q + Y A P +L + ++ V+ V +++ S ES
Sbjct: 238 CPLIGVI---QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV--AIAE-TDSWES 291
Query: 129 ----PDQKITVVGAGQVGMAC--TYSI--LTQTMARDAVS----------TVDRL-LSQV 169
+ ITV +G+ C Y L ++ D++ ++ L QV
Sbjct: 292 FFVSVRKAITV--LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 170 APSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL 229
+ + + QV ++ L G N + G L L
Sbjct: 350 QDYVNKTNSHLP--AGKQVEIS-----LVNG-AKNLVV--------SGPPQSLYGLNLTL 393
Query: 230 RSPKIESGSD---IAMSE-----GSRIVIITA--------GVRSLVGETRLQLVDRNVKI 273
R K SG D I SE +R + + + L+ + LV NV
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK---DLVKNNVSF 450
Query: 274 F-KDL-IP--KIAKGS----------PDCILLIISNPVDVLTYISW-KLSGFPKNRVI-- 316
KD+ IP GS + II PV W + F ++
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK------WETTTQFKATHILDF 504
Query: 317 GSGT----------NLDSMRFRVLLAQKLGLSPESVHGF 345
G G N D RV++A L ++P+ +GF
Sbjct: 505 GPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGF 543
Score = 51.6 bits (123), Expect = 6e-07
Identities = 75/449 (16%), Positives = 142/449 (31%), Gaps = 135/449 (30%)
Query: 85 PQPS-AYKTDAPPTKLARLA-------TSTMARDAVSTVDRLLSQVAPSIES---PDQKI 133
P+P+ + D PT A L +S + V D++L+ E+ I
Sbjct: 42 PEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI 101
Query: 134 TVVGAGQVGMACTYSILTQTMAR---DAVSTVDRLLSQVAPS-----IESPDQKITVVGA 185
+ A + T + T+ + + A R + + S + + ++ +
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 186 GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL-QHGAPFLRSPKIESGSDIAMSE 244
GQ G Y F E+ DL Q +
Sbjct: 162 GQ-GNTDDY----------F-----------EELRDLYQTYHVLVGD------------- 186
Query: 245 GSRIVIITAGVRSLVGETRLQLVDRNV---KIFK---DLIP--KIAKGSPDCILLIISNP 296
+I + ET +L+ + K+F +++ + +PD L+ S P
Sbjct: 187 ----LIKFSA------ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL-SIP 235
Query: 297 VDVLTYISWKLSGFPKNRVIGSGTNLDSM-RFRVLLAQKLGLSPESVHGFIIG--EHGD- 352
+ S L IG + + + V A+ LG +P + ++ G H
Sbjct: 236 I------SCPL--------IG----VIQLAHYVVT-AKLLGFTPGELRSYLKGATGHSQG 276
Query: 353 -------SSVPVWSGVNVAGVTLKELNPTIGTE-QDTENFVRLHADVVNSAYEVIKLKGY 404
+ W V+ + IG + L ++ + E +G
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN--EGV 334
Query: 405 TSWAL---GLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHII 461
S L L+ + +N TN H ++V +SL NG +++
Sbjct: 335 PSPMLSISNLTQEQV-QDYVNKTNS----------HLPAGKQVEISLV-----NGAKNLV 378
Query: 462 NQNLT-PDEA-----EKLRKSAATISQIQ 484
++ P ++ LRK+ A Q
Sbjct: 379 ---VSGPPQSLYGLNLTLRKAKAPSGLDQ 404
Score = 33.1 bits (75), Expect = 0.29
Identities = 54/321 (16%), Positives = 91/321 (28%), Gaps = 108/321 (33%)
Query: 184 GAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMS 243
G+ + GM +Y +R D +G F S DI ++
Sbjct: 1625 GSQEQGMG-------MDLYKTSKAAQDVWNRADNHFKD-TYG--F-------SILDIVIN 1667
Query: 244 EGSRIVI---------ITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAK---GSPDCILL 291
+ I I +++ ET + + KIFK++ S +L
Sbjct: 1668 NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS 1727
Query: 292 IISN--P----VDVLTYISWKLSG-FPKNRVI-G-SGTNLDSMRFRVLLAQKLG------ 336
P ++ + K G P + G S LG
Sbjct: 1728 ATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS----------------LGEYAALA 1771
Query: 337 -----LSPES----VH--GFII------GEHGDSSVPVWSGVNVAGV-------TLKELN 372
+S ES V G + E G S+ + +N V L+ +
Sbjct: 1772 SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM-IAINPGRVAASFSQEALQYVV 1830
Query: 373 PTIGTEQDTENFVRLHADVVN--SAYEVIKLKGYTSWALGLSVASISHTLLN--NTNKIH 428
+G T V ++VN + G L + +LN KI
Sbjct: 1831 ERVGKR--TGWLV----EIVNYNVENQQYVAAGDLR---ALDTVT---NVLNFIKLQKID 1878
Query: 429 ----AVSTLIQGHHGIEEEVF 445
S ++ +E +F
Sbjct: 1879 IIELQKSLSLE---EVEGHLF 1896
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown
function, glycosidase, hydrolase, manganese,
metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Length = 450
Score = 52.4 bits (125), Expect = 2e-07
Identities = 38/214 (17%), Positives = 78/214 (36%), Gaps = 45/214 (21%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNF-----CLIDSNEDRCK--GEMLDLQHGAPFLRS 231
KI +G G G S+++ L D + + + + + +
Sbjct: 7 KIAYIGGGSQGW--ARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRW--- 61
Query: 232 PKIESGSDI--AMSEGSRIVIITAGVRSL----------------------VGETRLQLV 267
+ E+ S + A+ + IVII+ SL VG +
Sbjct: 62 -RYEAVSTLKKAL-SAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRG 119
Query: 268 DRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIG--SGTNLDSM 325
R V IF ++ I +P+ ++ +NP+ V T + +K+ FP + IG
Sbjct: 120 LRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKV--FPGIKAIGCCHEVFGTQK 177
Query: 326 RFRVLLAQKLGL---SPESVHGFIIGEHGDSSVP 356
++ ++LG+ E + ++G + + +
Sbjct: 178 LLAEMVTERLGIEVPRREDIRVNVLGINHFTWIT 211
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein
structure initiative, MCSG glucosidase, NAD-dependent;
HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5
d.162.1.2
Length = 472
Score = 52.1 bits (124), Expect = 2e-07
Identities = 36/235 (15%), Positives = 72/235 (30%), Gaps = 58/235 (24%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFC------------LIDSNEDRCK--GEMLDL-- 222
I + G G S T GI L D++++R D+
Sbjct: 30 SIVIAGGG--------STFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFI 81
Query: 223 -QHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSL--------------------VG 260
+ + + +D V+ V G
Sbjct: 82 REKAPDI----EFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCG 137
Query: 261 ETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGT 320
+ R++ +++ + K SPD +L SNP ++ + +L P ++++
Sbjct: 138 PGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRL--RPNSKILNICD 195
Query: 321 NLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTI 375
+ R +AQ LGLS + + + W ++ +L P +
Sbjct: 196 MPVGIEDR--MAQILGLSS---RKEMKVRYYGLNHFGW-WTSIQDQEGNDLMPKL 244
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+,
maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 480
Score = 50.6 bits (120), Expect = 7e-07
Identities = 41/213 (19%), Positives = 71/213 (33%), Gaps = 45/213 (21%)
Query: 176 PDQKITVVGAGQVGMACTYSILTQGIY-------SNFCLIDSNEDRCKGEMLDLQHGAPF 228
P KI ++GAG + L + S L+D +E+R + +
Sbjct: 2 PSVKIGIIGAGSAVFS---LRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEE 58
Query: 229 L-RSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVD------------------ 268
+ K E ++ + + VI TA V +++ +
Sbjct: 59 VGADLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVS 118
Query: 269 --------RNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGT 320
+K F D+ KI K SP L +NP+ T ++ + +G
Sbjct: 119 DYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGT---TLVTRTVPIKAVGFCH 175
Query: 321 NLDSMRFRVLLAQKLGLSPESVHGFIIG-EHGD 352
+ + +KLGL E V + G HG
Sbjct: 176 GHYGVME---IVEKLGLEEEKVDWQVAGVNHGI 205
>1vjt_A Alpha-glucosidase; TM0752, structural genomics, JCSG, PSI, P
structure initiative, joint center for structural
genomics, hydrolase; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 483
Score = 45.7 bits (107), Expect = 3e-05
Identities = 32/225 (14%), Positives = 76/225 (33%), Gaps = 27/225 (12%)
Query: 132 KITVVGAGQVGMACTYSILTQTMARDAVSTVDRLLSQVAPSIESPDQKITVVG--AGQVG 189
KI+++GAG V A ++ + +S D + + + + ++
Sbjct: 14 KISIIGAGSVRFALQ--LVGDIAQTEELSREDTHIYMMDVHERRLNASYILARKYVEELN 71
Query: 190 MACTYSILTQ----GIYSNFCL--IDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMS 243
+ ++F + + R S + + + +
Sbjct: 72 SPVKIVKTSSLDEAIDGADFIINTAYPYDPRYHD-----------SGSQRWDEVTKVGEK 120
Query: 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYI 303
G I + + + T + ++K+ ++ K+ K +P L+ +NPV +T
Sbjct: 121 HGYYRGIDSQELNMVSTYTYVLSSYPDMKLALEIAEKMKKMAPKAYLMQTANPVFEIT-- 178
Query: 304 SWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIG 348
+ + ++G + + +KL L PE V + G
Sbjct: 179 -QAVRRWTGANIVGF---CHGVAGVYEVFEKLDLDPEEVDWQVAG 219
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI,
protein structure initi midwest center for structural
genomics; 2.31A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.2
Length = 450
Score = 44.4 bits (104), Expect = 7e-05
Identities = 38/211 (18%), Positives = 67/211 (31%), Gaps = 58/211 (27%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFC------------LIDSNEDRCKGEMLDLQHGA 226
KI +G G S T + L+D E + K E++
Sbjct: 9 KIATIGGG--------SSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIV-----G 55
Query: 227 PFLRSPKIESGSDIAMS---------EGSRIVIITAGVRSL------------------- 258
+ ++G I + +G+ V V L
Sbjct: 56 ALAKRMVEKAGVPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQE 115
Query: 259 -VGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317
G L R + + D+I + + PD L+ +NP ++T + + +V+G
Sbjct: 116 TNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRY--TKQEKVVG 173
Query: 318 SGTNLDSMRFRVLLAQKLGLSPESVHGFIIG 348
MR +A+ LG+ + VH G
Sbjct: 174 LCNVPIGMRMG--VAKLLGVDADRVHIDFAG 202
>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na
dependent; HET: G6P NAD; 2.4A {Thermotoga maritima}
SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A
Length = 417
Score = 40.5 bits (94), Expect = 0.001
Identities = 24/205 (11%), Positives = 50/205 (24%), Gaps = 52/205 (25%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFC------------LIDSNEDRCK--GEMLDLQH 224
+I V+G G S T + D +E++ K + +
Sbjct: 4 RIAVIGGG--------SSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLV 55
Query: 225 GAPFLRSPKIESGSDI-AMSEGSRIVIITAGV--------------------RSLVGETR 263
K+ ++ VI + G
Sbjct: 56 KDR----FKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGG 111
Query: 264 LQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLD 323
R I ++ + + + + ++ +NP +T + IG
Sbjct: 112 FSAALRAFPIVEEYV-DTVRKTSNATIVNFTNPSGHITEFVRNY--LEYEKFIGLCNVPI 168
Query: 324 SMRFRVLLAQKLGLSPESVHGFIIG 348
+ +A+ E V G
Sbjct: 169 NFIRE--IAEMFSARLEDVFLKYYG 191
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands,
dimer, cavity, oxidoreductase; 2.30A {Pseudomonas
putida}
Length = 430
Score = 35.6 bits (81), Expect = 0.029
Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 2/90 (2%)
Query: 167 SQVAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA 226
S + P ++I +VGAG G+ + + ++ +L+ A
Sbjct: 12 SGLVPRGSHMKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTV--A 69
Query: 227 PFLRSPKIESGSDIAMSEGSRIVIITAGVR 256
+ + E D+
Sbjct: 70 HNAVTVQREVALDVNEWPSEEFGYFGHYYY 99
Score = 31.0 bits (69), Expect = 0.94
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 120 SQVAPSIESPDQKITVVGAGQVGMACTYSIL 150
S + P ++I +VGAG G+ +
Sbjct: 12 SGLVPRGSHMKKRIGIVGAGTAGLHLGLFLR 42
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD,
RCK domain, potassium transport, potassium channel,
KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii}
SCOP: c.2.1.9
Length = 140
Score = 31.7 bits (73), Expect = 0.21
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNF--CLIDSNEDRCK--GEMLDLQ 223
I + G G+VG Y++ LID ++D CK +D
Sbjct: 6 YIIIAGIGRVG----YTLAKSLSEKGHDIVLIDIDKDICKKASAEIDAL 50
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases, csgid,
niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 31.4 bits (72), Expect = 0.67
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCK--GEMLDLQ 223
KI ++GAGQVG +++ + + ++D + DR + + DL+
Sbjct: 5 KIIILGAGQVGGTLAENLVGENN--DITIVDKDGDRLRELQDKYDLR 49
Score = 29.5 bits (67), Expect = 2.6
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 162 VDRLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFC--LIDSNEDRCK 216
+ ++S++ E P ++I +VG G +G + L + + + LI+ N R +
Sbjct: 221 IRSVMSELQRL-EKPYRRIMIVGGGNIGAS-----LAKRLEQTYSVKLIERNLQRAE 271
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 29.5 bits (67), Expect = 2.2
Identities = 6/38 (15%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCK 216
K+ ++G S+L++ +I+ + + C+
Sbjct: 2 KVIIIGGETTAYYLARSMLSRKY--GVVIINKDRELCE 37
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance,
extracellular module, genetic disorder, corneal
dystrophy; HET: NAG; 2.6A {Drosophila melanogaster}
SCOP: b.118.1.1 b.118.1.1
Length = 324
Score = 29.2 bits (65), Expect = 3.4
Identities = 6/31 (19%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 451 VMADNGVTHIINQNLTPDEAEKLRKSAATIS 481
V NG+ H+I+ L ++ + + + +
Sbjct: 293 VECTNGIIHVIDYPLLEEKD--VVVAGGSAA 321
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium
toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A*
1c0k_A*
Length = 363
Score = 28.9 bits (64), Expect = 3.8
Identities = 5/26 (19%), Positives = 15/26 (57%)
Query: 175 SPDQKITVVGAGQVGMACTYSILTQG 200
+++ V+G+G +G++ + +G
Sbjct: 4 HSQKRVVVLGSGVIGLSSALILARKG 29
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter
sphaeroides} PDB: 1w7e_A
Length = 137
Score = 27.7 bits (62), Expect = 4.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 451 VMADNGVTHIINQNLTP 467
V A NGV H+I+ L P
Sbjct: 119 VDASNGVIHVIDGVLMP 135
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 28.6 bits (63), Expect = 4.5
Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 6/98 (6%)
Query: 132 KITVVGAGQVGMACTYSILTQTMARDAVSTVDRLLSQVAPSIESPDQKITVVGAGQVGMA 191
KI V+GAG G+ L Q A+ V++ E + + G A
Sbjct: 2 KILVIGAGPAGLVFASQ-LKQARPLWAIDIVEK-----NDEQEVLGWGVVLPGRPGQHPA 55
Query: 192 CTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL 229
S L N ++ + E + G
Sbjct: 56 NPLSYLDAPERLNPQFLEDFKLVHHNEPSLMSTGVLLC 93
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair,
exonuclease, hydrolase, nuclease, nucleus,
phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A
{Homo sapiens} PDB: 3g65_C 3ggr_B
Length = 281
Score = 28.4 bits (63), Expect = 5.6
Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 28/105 (26%)
Query: 325 MRFRVLLA---------------QKLG------LSPESVHGFIIGEHGDSSVPVWSGVNV 363
M+FR + KL +SP+ ++ + + + V +W +
Sbjct: 2 MKFRAKIVDGACLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVSMWCELEQ 61
Query: 364 AGV-------TLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL 401
+ N I E +EN R N+ IKL
Sbjct: 62 ENFFNEFQMEGVSAENNEIYLELTSENLSRALKTAQNARALKIKL 106
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 28.3 bits (64), Expect = 6.0
Identities = 9/79 (11%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Query: 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES 236
+ + ++G G G++C L +G+ ++D+ + L
Sbjct: 5 GKNVVIIGLGLTGLSCVDFFLARGV--TPRVMDTRMTPPGLD--KLPEAVER-----HTG 55
Query: 237 GSDIAMSEGSRIVIITAGV 255
+ + +++ + G+
Sbjct: 56 SLNDEWLMAADLIVASPGI 74
>1n7o_A Hyaluronidase; protein mutant, lyase; 1.50A {Streptococcus
pneumoniae} SCOP: a.102.3.2 b.24.1.1 b.30.5.2 PDB:
1egu_A 1c82_A 1f9g_A* 1ojp_A* 1w3y_A* 2brp_A* 2brv_X
2brw_A 1lxk_A* 1loh_A* 1ojm_A* 1n7p_A 1ojn_A* 1n7n_A
1ojo_A* 1n7r_A* 1n7q_A*
Length = 721
Score = 28.6 bits (63), Expect = 6.2
Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 369 KELNPTIGTEQDTENFVRLHAD--VVNSAYEVIKLKGYTSWALGLSVASISHTLLNNTNK 426
K++N ++ F+ + +Y + + + + +L+ N
Sbjct: 595 KDINEGQSDKEVENEFLTISQAHKQNGDSYGYMLIPNVDRATFNQMIKELESSLIENNET 654
Query: 427 IHAVSTLIQGHHGI 440
+ +V QG GI
Sbjct: 655 LQSVYDAKQGVWGI 668
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 28.2 bits (63), Expect = 7.1
Identities = 6/31 (19%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 182 VVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212
++GAG G+ ++ GI ++ +++
Sbjct: 9 IIGAGAAGIGMAITLKDFGI-TDVIILEKGT 38
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.3 bits (63), Expect = 7.1
Identities = 11/69 (15%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 349 EHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWA 408
E + P + + ++L P +++ E F H D V ++ ++ ++
Sbjct: 910 ELFNGYNPEKKEMIQEVIVEEDLEPFEASKETAEQFKHQHGDKV----DIFEIPETGEYS 965
Query: 409 L-GLSVASI 416
+ L A++
Sbjct: 966 VKLLKGATL 974
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote
structure initiative, NEW YORK SGX research center for
STRU genomics; 1.88A {Caenorhabditis elegans}
Length = 481
Score = 27.9 bits (63), Expect = 7.5
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 179 KITVVGAGQVG---MACTYSILTQGIYSNFCLIDSNEDR 214
K+ VGAG VG A I + + ++D N +
Sbjct: 11 KVVCVGAGYVGGPTCAM---IAHKCPHITVTVVDMNTAK 46
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET:
FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 28.1 bits (62), Expect = 7.6
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 179 KITVVGAGQVGMACTYSILTQG 200
++ V+GAG +G++ I +
Sbjct: 2 RVVVIGAGVIGLSTALCIHERY 23
>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin
domain, structural genomics, PSI, protein structure
initiative; NMR {Mycobacterium tuberculosis} SCOP:
b.118.1.1
Length = 163
Score = 27.0 bits (60), Expect = 9.3
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 451 VMADNGVTHIINQNLTPD 468
V N ++I+ L P
Sbjct: 145 VSTANATVYMIDSVLMPP 162
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.370
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,069,025
Number of extensions: 431260
Number of successful extensions: 1537
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1379
Number of HSP's successfully gapped: 115
Length of query: 488
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 391
Effective length of database: 3,993,456
Effective search space: 1561441296
Effective search space used: 1561441296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (26.7 bits)