BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12829
(181 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242011218|ref|XP_002426352.1| DNA-directed RNA polymerase II 33 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212510429|gb|EEB13614.1| DNA-directed RNA polymerase II 33 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 275
Score = 339 bits (869), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 158/181 (87%), Positives = 172/181 (95%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSVHITDLTDENVKFQ+EDTELSVANS+RRVFIAETPTMAIDWVQLEANSTVL+
Sbjct: 1 MPYANQPSVHITDLTDENVKFQIEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLA 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFI+ R+GLIPLTSDEVVDRI Y+RDCTC+DFC ECSVEFTLDVKC DD TRHVTTADL
Sbjct: 61 DEFISHRVGLIPLTSDEVVDRIQYTRDCTCLDFCPECSVEFTLDVKCTDDHTRHVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
KS+D RV+PVTSR+R+ D +EYGE D+ILIVKLRKGQEL+LRAYAKKGFGKEHAKWNPTA
Sbjct: 121 KSSDPRVLPVTSRHREDDTSEYGEADEILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|350400985|ref|XP_003486021.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Bombus
impatiens]
Length = 276
Score = 335 bits (860), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 155/181 (85%), Positives = 171/181 (94%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSVHI+DLT+ENVKFQVEDTELSVANS+RRVFIAETPTMAIDWVQLEANSTVLS
Sbjct: 1 MPYANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A RIG+IPL SD+VVDRI Y+RDC C+DFC ECSVEFTLDVKC +DQTRHVTTAD
Sbjct: 61 DEFLAHRIGMIPLISDDVVDRIQYTRDCQCMDFCPECSVEFTLDVKCTEDQTRHVTTADF 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
KS+D RV+PVTSR+R+ D +EYGETD+ILIVKLRKGQEL+LRAYAKKGFGKEHAKWNPTA
Sbjct: 121 KSSDPRVLPVTSRHREDDASEYGETDEILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|383848177|ref|XP_003699728.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Megachile rotundata]
Length = 276
Score = 335 bits (859), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 154/181 (85%), Positives = 171/181 (94%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSVHI+DLT+ENVKFQVEDTELSVANS+RRVFIAETPTMAIDW+QLEANSTVLS
Sbjct: 1 MPYANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A RIG+IPL SD+VVDRI Y+RDC C+DFC ECSVEFTLDVKC +DQTRHVTTAD
Sbjct: 61 DEFLAHRIGMIPLISDDVVDRIQYTRDCQCMDFCPECSVEFTLDVKCTEDQTRHVTTADF 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
KS+D RV+PVTSR+R+ D +EYGETD+ILIVKLRKGQEL+LRAYAKKGFGKEHAKWNPTA
Sbjct: 121 KSSDPRVLPVTSRHREDDASEYGETDEILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|114051193|ref|NP_001040388.1| DNA-directed RNA polymerase II polypeptide [Bombyx mori]
gi|95102714|gb|ABF51298.1| DNA-directed RNA polymerase II polypeptide [Bombyx mori]
Length = 275
Score = 335 bits (858), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 157/181 (86%), Positives = 170/181 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSVHIT+L+DENVKF VEDTELSVANS+RRVFIAETPTMAIDWVQLEANSTVLS
Sbjct: 1 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A RIGLIPL SD+VVD+I YSRDC CVDFCSECSVEFTLDVKC D+QTRHVTTADL
Sbjct: 61 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
KS+D RVVPVTSR+RD D +YGE D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTA
Sbjct: 121 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|66517558|ref|XP_624836.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Apis
mellifera]
gi|380029804|ref|XP_003698555.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Apis
florea]
Length = 276
Score = 335 bits (858), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 154/181 (85%), Positives = 171/181 (94%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSVHI+DLT+ENVKFQVEDTELSVANS+RRVFIAETPTMAIDW+QLEANSTVLS
Sbjct: 1 MPYANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A RIG+IPL SD+VVDRI Y+RDC C+DFC ECSVEFTLDVKC +DQTRHVTTAD
Sbjct: 61 DEFLAHRIGMIPLISDDVVDRIQYTRDCQCMDFCPECSVEFTLDVKCTEDQTRHVTTADF 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
KS+D RV+PVTSR+R+ D +EYGETD+ILIVKLRKGQEL+LRAYAKKGFGKEHAKWNPTA
Sbjct: 121 KSSDPRVLPVTSRHREDDASEYGETDEILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|307175611|gb|EFN65520.1| DNA-directed RNA polymerase II subunit RPB3 [Camponotus floridanus]
Length = 276
Score = 334 bits (857), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 153/181 (84%), Positives = 172/181 (95%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSVHI+DLT+ENVKFQVEDTELSVANS+RRVFIAETPTMAIDW+QLEANSTVLS
Sbjct: 1 MPYANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A RIG+IPL SD+VVDRI ++RDC C+DFC ECSVEFTLDVKC++DQTRHVTTAD
Sbjct: 61 DEFLAHRIGMIPLISDDVVDRIQFTRDCQCMDFCPECSVEFTLDVKCIEDQTRHVTTADF 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
KS+D RV+PVTSR+R+ D +EYGETD+ILIVKLRKGQEL+LRAYAKKGFGKEHAKWNPTA
Sbjct: 121 KSSDPRVLPVTSRHREDDASEYGETDEILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|322793846|gb|EFZ17186.1| hypothetical protein SINV_07940 [Solenopsis invicta]
Length = 325
Score = 333 bits (854), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 153/181 (84%), Positives = 171/181 (94%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSVHI+DLT+ENVKFQVEDTELSVANS+RRVFIAETPTMAIDW+QLEANSTVLS
Sbjct: 1 MPYANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A RIG+IPL SD+VVDRI Y+RDC C+DFC ECSVEFTLDVKC +DQTRHVTTAD
Sbjct: 61 DEFLAHRIGMIPLISDDVVDRIQYTRDCQCMDFCPECSVEFTLDVKCTEDQTRHVTTADF 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
KS+D RV+PVTSR+R+ + +EYGETD+ILIVKLRKGQEL+LRAYAKKGFGKEHAKWNPTA
Sbjct: 121 KSSDPRVLPVTSRHREDEASEYGETDEILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|40645083|dbj|BAD06460.1| homologue of DNA-directed RNA polymerase II subunit [Antheraea
pernyi]
gi|40645085|dbj|BAD06461.1| homologue of DNA-directed RNA polymerase II subunit [Antheraea
pernyi]
Length = 275
Score = 333 bits (853), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 156/181 (86%), Positives = 169/181 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSVHIT+L D+NVKF VEDTELSVANS+RRVFIAETPTMAIDW+QLEANSTVLS
Sbjct: 1 MPYANQPSVHITELNDDNVKFVVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A RIGLIPL SD+VVD+I YSRDC C DFCSECSVEFTLDVKC DDQTRHVTTADL
Sbjct: 61 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCADFCSECSVEFTLDVKCTDDQTRHVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
KS+D RVVPVTSR+RD D +YGETD+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTA
Sbjct: 121 KSSDPRVVPVTSRHRDEDQADYGETDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|307202125|gb|EFN81625.1| DNA-directed RNA polymerase II subunit RPB3 [Harpegnathos saltator]
Length = 276
Score = 332 bits (851), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 153/181 (84%), Positives = 170/181 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSVHI+DLT+ENVKFQVE TELSVANS+RRVFIAETPTMAIDW+QLEANSTVLS
Sbjct: 1 MPYANQPSVHISDLTEENVKFQVEYTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A RIG+IPL SD+VVDRI Y+RDC C+DFC ECSVEFTLDVKC +DQTRHVTTAD
Sbjct: 61 DEFLAHRIGMIPLISDDVVDRIQYTRDCQCMDFCPECSVEFTLDVKCTEDQTRHVTTADF 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
KS+D RV+PVTSR+R+ D +EYGETD+ILIVKLRKGQEL+LRAYAKKGFGKEHAKWNPTA
Sbjct: 121 KSSDPRVLPVTSRHREDDASEYGETDEILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|156551093|ref|XP_001603079.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Nasonia vitripennis]
Length = 276
Score = 330 bits (846), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 152/181 (83%), Positives = 170/181 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+VHI++LT+EN+KFQVEDTELSVANS+RRVFIAETPTMAIDWVQ+EANSTVLS
Sbjct: 1 MPYANQPTVHISELTEENIKFQVEDTELSVANSMRRVFIAETPTMAIDWVQIEANSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A RIG+IPL SDEVVDRI Y+RDC C+DFC EC VEFTLDVKC D+ TRHVTTADL
Sbjct: 61 DEFLAHRIGMIPLISDEVVDRIQYTRDCQCMDFCPECCVEFTLDVKCSDETTRHVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
KS++ RVVPVTS++RD D NEYGETD+ILIVKLRKGQEL+LRAYAKKGFGKEHAKWNPTA
Sbjct: 121 KSSEQRVVPVTSKHRDDDANEYGETDEILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|357630064|gb|EHJ78455.1| DNA-directed RNA polymerase II polypeptide [Danaus plexippus]
Length = 275
Score = 328 bits (840), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 154/181 (85%), Positives = 168/181 (92%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSVHIT+LTD+NVKF VEDTELSVANS+RRVFIAETPTMAIDWVQLEANSTVLS
Sbjct: 1 MPYANQPSVHITELTDDNVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A RIGLIPL SD+VVD+I YSRDC C DFC+ECSVEFTLDVKC DQTRHVTTADL
Sbjct: 61 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCADFCTECSVEFTLDVKCTGDQTRHVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
KS+D RVVPVTSR+RD D +YGE D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPT+
Sbjct: 121 KSSDPRVVPVTSRHRDEDQADYGELDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTS 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|427787879|gb|JAA59391.1| Putative rna polymerase ii subunit polr2c/rpb3 [Rhipicephalus
pulchellus]
Length = 274
Score = 327 bits (839), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 154/181 (85%), Positives = 171/181 (94%), Gaps = 1/181 (0%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSVHI++LTDENVKF VEDT+LSVANSLRRVFIAETPT+AIDWVQLEANSTVL
Sbjct: 1 MPYANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAETPTLAIDWVQLEANSTVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSDE+VD++ YSRDCTC DFC+ECSVEFTLDVKC+D+QTRHVTTADL
Sbjct: 61 DEFIAHRLGLIPLTSDEIVDKMQYSRDCTCADFCTECSVEFTLDVKCLDEQTRHVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
KS+D RVVPVTSR++D D NEYGET+DILIVKLRKGQE++ RAYAKKGFGKEHAKWNPT
Sbjct: 121 KSSDPRVVPVTSRHKD-DTNEYGETEDILIVKLRKGQEVKARAYAKKGFGKEHAKWNPTC 179
Query: 181 G 181
G
Sbjct: 180 G 180
>gi|346471307|gb|AEO35498.1| hypothetical protein [Amblyomma maculatum]
Length = 274
Score = 326 bits (836), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 153/181 (84%), Positives = 171/181 (94%), Gaps = 1/181 (0%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSVHI++LTDENVKF VEDT+LSVANS+RRVFIAETPT+AIDWVQLEANSTVL
Sbjct: 1 MPYANQPSVHISELTDENVKFFVEDTDLSVANSIRRVFIAETPTLAIDWVQLEANSTVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSDE+VD++ YSRDCTC DFC+ECSVEFTLDVKC+D+QTRHVTTADL
Sbjct: 61 DEFIAHRLGLIPLTSDEIVDKMQYSRDCTCADFCTECSVEFTLDVKCLDEQTRHVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
KS+D RVVPVTSR++D D NEYGET+DILIVKLRKGQE++ RAYAKKGFGKEHAKWNPT
Sbjct: 121 KSSDPRVVPVTSRHKD-DTNEYGETEDILIVKLRKGQEVKARAYAKKGFGKEHAKWNPTC 179
Query: 181 G 181
G
Sbjct: 180 G 180
>gi|241853662|ref|XP_002415909.1| RNA polymerase II, subunit POLR2C/RPB3, putative [Ixodes
scapularis]
gi|215510123|gb|EEC19576.1| RNA polymerase II, subunit POLR2C/RPB3, putative [Ixodes
scapularis]
Length = 274
Score = 322 bits (825), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 152/181 (83%), Positives = 169/181 (93%), Gaps = 1/181 (0%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSVHI++LTDENVKF VEDT+LSVANSLRRVFIAE T+AIDWVQLEANSTVL
Sbjct: 1 MPYANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAEVATLAIDWVQLEANSTVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSDE+VD++ YSRDCTC DFC+ECSVEFT+DVKC+D+QTRHVTTADL
Sbjct: 61 DEFIAHRLGLIPLTSDEIVDKMQYSRDCTCADFCTECSVEFTIDVKCLDEQTRHVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
KS+D RVVPVTSR++D D NEYGETDDILIVKLRKGQE++ RAYAKKGFGKEHAKWNPT
Sbjct: 121 KSSDPRVVPVTSRHKD-DTNEYGETDDILIVKLRKGQEVKARAYAKKGFGKEHAKWNPTC 179
Query: 181 G 181
G
Sbjct: 180 G 180
>gi|332376707|gb|AEE63493.1| unknown [Dendroctonus ponderosae]
Length = 275
Score = 321 bits (822), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 149/181 (82%), Positives = 164/181 (90%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSVHITDLTDENVKF VEDT+LSVANS+RR+ IAETPT+AIDWV+LEANSTVLS
Sbjct: 1 MPYANQPSVHITDLTDENVKFYVEDTDLSVANSIRRILIAETPTLAIDWVKLEANSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A RIGLIPL SDEVV R+ Y RDC C DFC ECSVEFTLDVKC DDQTRHVTTADL
Sbjct: 61 DEFLAHRIGLIPLISDEVVQRLQYPRDCICTDFCQECSVEFTLDVKCTDDQTRHVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
KS+D RV+P S++RD D N+YGETD+ILIVKLRKGQEL++RAYAKKGFGKEHAKWNPT
Sbjct: 121 KSSDPRVIPAPSKHRDDDSNDYGETDEILIVKLRKGQELKIRAYAKKGFGKEHAKWNPTC 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|195031522|ref|XP_001988351.1| GH11119 [Drosophila grimshawi]
gi|195115860|ref|XP_002002474.1| GI12561 [Drosophila mojavensis]
gi|195397712|ref|XP_002057472.1| GJ18149 [Drosophila virilis]
gi|193904351|gb|EDW03218.1| GH11119 [Drosophila grimshawi]
gi|193913049|gb|EDW11916.1| GI12561 [Drosophila mojavensis]
gi|194141126|gb|EDW57545.1| GJ18149 [Drosophila virilis]
Length = 275
Score = 316 bits (810), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 149/182 (81%), Positives = 170/182 (93%), Gaps = 1/182 (0%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSV IT+LTD+NVKF +EDTELSVANSLRRVFIAETPT+AIDWVQLEANSTVLS
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A RIGLIPL SD+VV+R+ Y+RDC C+DFC ECSVEFTLDVKC ++QTRHVTTADL
Sbjct: 61 DEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCNEEQTRHVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGE-TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
KS++A+V+PVTSRN+ + NEYGE TD+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPT
Sbjct: 121 KSSNAKVLPVTSRNQGEEDNEYGESTDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPT 180
Query: 180 AG 181
AG
Sbjct: 181 AG 182
>gi|242247264|ref|NP_001156090.1| DNA-directed RNA polymerase II polypeptide-like [Acyrthosiphon
pisum]
gi|239789163|dbj|BAH71223.1| ACYPI001769 [Acyrthosiphon pisum]
Length = 273
Score = 316 bits (810), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 145/181 (80%), Positives = 167/181 (92%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSVHI++LT +++KFQ+EDT+LSVANSLRRVFIAETPT+AIDWVQL+ NSTVLS
Sbjct: 1 MPYANQPSVHISELTTDSIKFQIEDTDLSVANSLRRVFIAETPTLAIDWVQLDCNSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIASRIGLIPLTSDE+VDR+ YSRDCTC DFC +CSVEF L VKC ++ TRHVTTADL
Sbjct: 61 DEFIASRIGLIPLTSDEIVDRLQYSRDCTCSDFCHDCSVEFNLHVKCSEEMTRHVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S + RVVPVTSRN+D+D+NEYGE DDILI+KLRKGQEL++RA+AKKGFGKEHAKWNPT
Sbjct: 121 VSNNPRVVPVTSRNQDSDINEYGEKDDILIIKLRKGQELKIRAFAKKGFGKEHAKWNPTT 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|195472723|ref|XP_002088649.1| GE18688 [Drosophila yakuba]
gi|194174750|gb|EDW88361.1| GE18688 [Drosophila yakuba]
Length = 275
Score = 316 bits (809), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 148/182 (81%), Positives = 170/182 (93%), Gaps = 1/182 (0%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSV IT+LTD+NVKF +EDTELSVANSLRRVFIAETPT+AIDWVQLEANSTVLS
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A RIGLIPL SD+VV+R+ Y+RDC C+DFC ECSVEFTLDVKC ++QTRHVTTADL
Sbjct: 61 DEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTRHVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
KS++A+V+PVTSRN+ + NEYGE+ D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPT
Sbjct: 121 KSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPT 180
Query: 180 AG 181
AG
Sbjct: 181 AG 182
>gi|195579088|ref|XP_002079394.1| GD23930 [Drosophila simulans]
gi|194191403|gb|EDX04979.1| GD23930 [Drosophila simulans]
Length = 275
Score = 315 bits (808), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 148/182 (81%), Positives = 170/182 (93%), Gaps = 1/182 (0%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSV IT+LTD+NVKF +EDTELSVANSLRRVFIAETPT+AIDWVQLEANSTVLS
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A RIGLIPL SD+VV+R+ Y+RDC C+DFC ECSVEFTLDVKC ++QTRHVTTADL
Sbjct: 61 DEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTRHVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
KS++A+V+PVTSRN+ + NEYGE+ D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPT
Sbjct: 121 KSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPT 180
Query: 180 AG 181
AG
Sbjct: 181 AG 182
>gi|17137650|ref|NP_477419.1| RNA polymerase II 33kD subunit [Drosophila melanogaster]
gi|4490379|emb|CAB38635.1| RNA polymerase II p33 subunit [Drosophila melanogaster]
gi|7298103|gb|AAF53342.1| RNA polymerase II 33kD subunit [Drosophila melanogaster]
gi|16767948|gb|AAL28192.1| GH07456p [Drosophila melanogaster]
gi|220944002|gb|ACL84544.1| RpII33-PA [synthetic construct]
gi|220953902|gb|ACL89494.1| RpII33-PA [synthetic construct]
Length = 275
Score = 315 bits (808), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 148/182 (81%), Positives = 170/182 (93%), Gaps = 1/182 (0%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSV IT+LTD+NVKF +EDTELSVANSLRRVFIAETPT+AIDWVQLEANSTVLS
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A RIGLIPL SD+VV+R+ Y+RDC C+DFC ECSVEFTLDVKC ++QTRHVTTADL
Sbjct: 61 DEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTRHVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
KS++A+V+PVTSRN+ + NEYGE+ D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPT
Sbjct: 121 KSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPT 180
Query: 180 AG 181
AG
Sbjct: 181 AG 182
>gi|195433589|ref|XP_002064793.1| GK15011 [Drosophila willistoni]
gi|194160878|gb|EDW75779.1| GK15011 [Drosophila willistoni]
Length = 275
Score = 315 bits (807), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 148/182 (81%), Positives = 170/182 (93%), Gaps = 1/182 (0%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSV IT+LTD+NVKF +EDTELSVANSLRRVFIAETPT+AIDWVQLEANSTVLS
Sbjct: 1 MPYANQPSVQITELTDDNVKFILEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A RIGLIPL SD+VV+R+ Y+RDC C+DFC ECSVEFTLDVKC ++QTRHVTTADL
Sbjct: 61 DEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCNEEQTRHVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
KS++A+V+PVTSRN+ + NEYGE+ D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPT
Sbjct: 121 KSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPT 180
Query: 180 AG 181
AG
Sbjct: 181 AG 182
>gi|91094813|ref|XP_970635.1| PREDICTED: similar to DNA-directed RNA polymerase II subunit
[Tribolium castaneum]
gi|270006567|gb|EFA03015.1| hypothetical protein TcasGA2_TC010438 [Tribolium castaneum]
Length = 274
Score = 315 bits (806), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 144/181 (79%), Positives = 165/181 (91%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSVHITDLTD+NVKF +EDT+LSVANS+RRV IAETPT+AIDWV+LEANSTVLS
Sbjct: 1 MPYANQPSVHITDLTDDNVKFYIEDTDLSVANSIRRVLIAETPTLAIDWVKLEANSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A RIGLIPL SD+VV R+ Y RDC C DFC ECSVEFTLDVKC DD TRHVTTADL
Sbjct: 61 DEFLAHRIGLIPLISDDVVQRLQYPRDCICTDFCHECSVEFTLDVKCTDDHTRHVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
KS+D RV+P TS++RD + +EYG+TD+ILI+KLRKGQEL+++AYAKKGFGKEHAKWNPTA
Sbjct: 121 KSSDPRVIPATSKHRDDESSEYGDTDEILIIKLRKGQELKVKAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|157119713|ref|XP_001659470.1| DNA-directed RNA polymerase II subunit [Aedes aegypti]
gi|108875224|gb|EAT39449.1| AAEL008755-PA [Aedes aegypti]
Length = 275
Score = 314 bits (805), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 149/182 (81%), Positives = 169/182 (92%), Gaps = 1/182 (0%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSV IT+LTDENVKF VEDT+LSV NSLRRVFIAETPT+AIDWVQLE+N+TVL+
Sbjct: 1 MPYANQPSVTITELTDENVKFVVEDTDLSVTNSLRRVFIAETPTLAIDWVQLESNTTVLA 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A R+GLIPL SDEVV+R+ YSRDCTC+DFC+ECSVEFTLDVKC D+ TRHVTTADL
Sbjct: 61 DEFLAHRVGLIPLISDEVVERMQYSRDCTCLDFCTECSVEFTLDVKCNDEHTRHVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGE-TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
KS+D RV+PVTSR+RD + NEYGE TD+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPT
Sbjct: 121 KSSDPRVLPVTSRHRDDEDNEYGEGTDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPT 180
Query: 180 AG 181
G
Sbjct: 181 CG 182
>gi|195338303|ref|XP_002035764.1| GM15286 [Drosophila sechellia]
gi|194129644|gb|EDW51687.1| GM15286 [Drosophila sechellia]
Length = 275
Score = 313 bits (803), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 147/182 (80%), Positives = 170/182 (93%), Gaps = 1/182 (0%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSV IT+LTD+NVKF +EDTELSVANSLRRVFIAETPT+AIDWVQLEANSTVLS
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A RIGLIPL SD+VV+R+ Y+RDC C+DFC ECSVEFTLDVKC ++QTRHVTTADL
Sbjct: 61 DEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTRHVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
KS++A+V+PVTSR++ + NEYGE+ D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPT
Sbjct: 121 KSSNAKVLPVTSRHQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPT 180
Query: 180 AG 181
AG
Sbjct: 181 AG 182
>gi|58391045|ref|XP_318245.2| AGAP010321-PA [Anopheles gambiae str. PEST]
gi|55236782|gb|EAA13388.2| AGAP010321-PA [Anopheles gambiae str. PEST]
Length = 273
Score = 313 bits (803), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 148/182 (81%), Positives = 169/182 (92%), Gaps = 1/182 (0%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSV I++LTDENVKF VEDTELSVANSLRRVFIAETPT+AIDWVQLE+N+TVL+
Sbjct: 1 MPYANQPSVTISELTDENVKFIVEDTELSVANSLRRVFIAETPTLAIDWVQLESNTTVLA 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A R+GLIPL SDEVVDR+ YSRDC C+DFC+ECSVEFTLDVKC ++ TRHVTTADL
Sbjct: 61 DEFLAHRVGLIPLISDEVVDRMQYSRDCPCLDFCNECSVEFTLDVKCNEEHTRHVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGE-TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
KS+D RV+PVTSR+RD + NEYGE TD+ILI+KLRKGQEL+L+AYAKKGFGKEHAKWNPT
Sbjct: 121 KSSDPRVLPVTSRHRDDEDNEYGEGTDEILIIKLRKGQELKLKAYAKKGFGKEHAKWNPT 180
Query: 180 AG 181
G
Sbjct: 181 CG 182
>gi|312378871|gb|EFR25321.1| hypothetical protein AND_09454 [Anopheles darlingi]
Length = 273
Score = 311 bits (798), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 147/182 (80%), Positives = 169/182 (92%), Gaps = 1/182 (0%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSV I++LTDENVKF VEDTELSVANSLRRVFIAETPT+AIDWVQLE+N+TVL+
Sbjct: 1 MPYANQPSVTISELTDENVKFVVEDTELSVANSLRRVFIAETPTLAIDWVQLESNTTVLA 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A R+GLIPL SDEVVDR+ YSRDC C+DFC++CSVEFTLDVKC ++ TRHVTTADL
Sbjct: 61 DEFLAHRVGLIPLISDEVVDRMQYSRDCPCLDFCNDCSVEFTLDVKCNEEHTRHVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGE-TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
KS+D RV+PVTSR+RD + NEYGE TD+ILI+KLRKGQEL+L+AYAKKGFGKEHAKWNPT
Sbjct: 121 KSSDPRVLPVTSRHRDDEDNEYGEGTDEILIIKLRKGQELKLKAYAKKGFGKEHAKWNPT 180
Query: 180 AG 181
G
Sbjct: 181 CG 182
>gi|125984946|ref|XP_001356237.1| GA20659 [Drosophila pseudoobscura pseudoobscura]
gi|195164762|ref|XP_002023215.1| GL21238 [Drosophila persimilis]
gi|54644558|gb|EAL33299.1| GA20659 [Drosophila pseudoobscura pseudoobscura]
gi|194105300|gb|EDW27343.1| GL21238 [Drosophila persimilis]
Length = 275
Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 145/182 (79%), Positives = 169/182 (92%), Gaps = 1/182 (0%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTD+NVKF +EDTELSVANSLRRVFIAETPT+AIDWVQLEANSTVLS
Sbjct: 1 MPYANQPNVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A RIGLIPL SD+VV+R+ Y+RDC C+DFC ECSVEFTLDVKC ++QTRHVTTADL
Sbjct: 61 DEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTRHVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGE-TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
K+++ +V+PVTSRN+ + NEYGE +D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPT
Sbjct: 121 KTSNPKVLPVTSRNQGEEDNEYGESSDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPT 180
Query: 180 AG 181
AG
Sbjct: 181 AG 182
>gi|340719719|ref|XP_003398295.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Bombus
terrestris]
Length = 273
Score = 309 bits (792), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 144/169 (85%), Positives = 159/169 (94%)
Query: 13 DLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIP 72
DLT+ENVKFQVEDTELSVANS+RRVFIAETPTMAIDWVQLEANSTVLSDEF+A RIG+IP
Sbjct: 10 DLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGMIP 69
Query: 73 LTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTS 132
L SD+VVDRI Y+RDC C+DFC ECSVEFTLDVKC +DQTRHVTTAD KS+D RV+PVTS
Sbjct: 70 LISDDVVDRIQYTRDCQCMDFCPECSVEFTLDVKCTEDQTRHVTTADFKSSDPRVLPVTS 129
Query: 133 RNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
R+R+ D +EYGETD+ILIVKLRKGQEL+LRAYAKKGFGKEHAKWNPTAG
Sbjct: 130 RHREDDASEYGETDEILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTAG 178
>gi|444725635|gb|ELW66196.1| DNA-directed RNA polymerase II subunit RPB3 [Tupaia chinensis]
Length = 707
Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 140/181 (77%), Positives = 162/181 (89%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 433 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 492
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 493 DEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 552
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 553 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 612
Query: 181 G 181
G
Sbjct: 613 G 613
>gi|427778021|gb|JAA54462.1| Putative rna polymerase ii subunit polr2c/rpb3 [Rhipicephalus
pulchellus]
Length = 324
Score = 303 bits (776), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 154/231 (66%), Positives = 171/231 (74%), Gaps = 51/231 (22%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSVHI++LTDENVKF VEDT+LSVANSLRRVFIAETPT+AIDWVQLEANSTVL
Sbjct: 1 MPYANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAETPTLAIDWVQLEANSTVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCT------------------------------- 89
DEFIA R+GLIPLTSDE+VD++ YSRDCT
Sbjct: 61 DEFIAHRLGLIPLTSDEIVDKMQYSRDCTCADXXXXIDWVQLEANSTVLHDEFIAHRLGL 120
Query: 90 -------------------CVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPV 130
C DFC+ECSVEFTLDVKC+D+QTRHVTTADLKS+D RVVPV
Sbjct: 121 IPLTSDEIVDKMQYSRDCTCADFCTECSVEFTLDVKCLDEQTRHVTTADLKSSDPRVVPV 180
Query: 131 TSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
TSR++D D NEYGET+DILIVKLRKGQE++ RAYAKKGFGKEHAKWNPT G
Sbjct: 181 TSRHKD-DTNEYGETEDILIVKLRKGQEVKARAYAKKGFGKEHAKWNPTCG 230
>gi|221043080|dbj|BAH13217.1| unnamed protein product [Homo sapiens]
Length = 424
Score = 303 bits (775), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 139/181 (76%), Positives = 161/181 (88%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPL SD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|148234336|ref|NP_001084998.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Xenopus
laevis]
gi|47682270|gb|AAH70601.1| MGC81245 protein [Xenopus laevis]
Length = 275
Score = 302 bits (774), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 139/181 (76%), Positives = 164/181 (90%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V +T+LTDENVKF VE+T+L++ANS+RRVFIAE PT+AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRLTELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRVGLIPLTSDDIVDKLQYSRDCTCDEFCPECSVEFTLDVRCTEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S + RV+PVTSR+RD D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 VSNNLRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|45360897|ref|NP_989124.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Xenopus
(Silurana) tropicalis]
gi|38511942|gb|AAH61444.1| polymerase (RNA) II (DNA directed) polypeptide C [Xenopus
(Silurana) tropicalis]
gi|89266865|emb|CAJ83921.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Xenopus
(Silurana) tropicalis]
gi|111598412|gb|AAH80362.1| polymerase (RNA) II (DNA directed) polypeptide C [Xenopus
(Silurana) tropicalis]
Length = 275
Score = 302 bits (774), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 140/181 (77%), Positives = 164/181 (90%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF VE+T+L++ANS+RRVFIAE PT+AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRVGLIPLTSDDIVDKLQYSRDCTCDEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S + RV+PVTSR+RD D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 VSNNLRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|77735375|ref|NP_001029384.1| DNA-directed RNA polymerase II subunit RPB3 [Bos taurus]
gi|73949776|ref|XP_535283.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 1
[Canis lupus familiaris]
gi|149699174|ref|XP_001494261.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like isoform
1 [Equus caballus]
gi|301752940|ref|XP_002912312.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Ailuropoda melanoleuca]
gi|348572668|ref|XP_003472114.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Cavia
porcellus]
gi|426242429|ref|XP_004015075.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Ovis aries]
gi|122146160|sp|Q3T0Q3.1|RPB3_BOVIN RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II subunit C
gi|74268238|gb|AAI02302.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Bos
taurus]
gi|152941118|gb|ABS44996.1| DNA directed RNA polymerase II polypeptide C [Bos taurus]
gi|281346645|gb|EFB22229.1| hypothetical protein PANDA_000038 [Ailuropoda melanoleuca]
gi|296477912|tpg|DAA20027.1| TPA: DNA-directed RNA polymerase II subunit RPB3 [Bos taurus]
gi|351697739|gb|EHB00658.1| DNA-directed RNA polymerase II subunit RPB3 [Heterocephalus glaber]
gi|417398216|gb|JAA46141.1| Putative rna polymerase ii subunit polr2c/rpb3 [Desmodus rotundus]
gi|440902632|gb|ELR53402.1| DNA-directed RNA polymerase II subunit RPB3 [Bos grunniens mutus]
Length = 275
Score = 302 bits (773), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 140/181 (77%), Positives = 162/181 (89%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|12837765|dbj|BAB23943.1| unnamed protein product [Mus musculus]
Length = 275
Score = 301 bits (770), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 139/181 (76%), Positives = 162/181 (89%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LT+ENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|410907303|ref|XP_003967131.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Takifugu rubripes]
Length = 275
Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 136/181 (75%), Positives = 164/181 (90%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVF++E PT+AIDW+Q++ANS+VL
Sbjct: 1 MPYANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A R+GLIPLTSD++VD++ YSRDCTC DFCSECSVE TLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFVAHRVGLIPLTSDDIVDKLQYSRDCTCDDFCSECSVELTLDVRCTEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S + RV+PVTSR+RD D N+Y E DDIL+VKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 LSNNPRVIPVTSRSRDNDPNDYVEQDDILVVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|29336059|ref|NP_033116.2| DNA-directed RNA polymerase II subunit RPB3 [Mus musculus]
gi|60223073|ref|NP_001012491.1| DNA-directed RNA polymerase II subunit RPB3 [Rattus norvegicus]
gi|354495470|ref|XP_003509853.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Cricetulus griseus]
gi|12805131|gb|AAH02023.1| Polymerase (RNA) II (DNA directed) polypeptide C [Mus musculus]
gi|59808391|gb|AAH89905.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Rattus
norvegicus]
gi|68534485|gb|AAH99548.1| Polymerase (RNA) II (DNA directed) polypeptide C [Mus musculus]
gi|74145092|dbj|BAE27415.1| unnamed protein product [Mus musculus]
gi|74191349|dbj|BAE30257.1| unnamed protein product [Mus musculus]
gi|74213568|dbj|BAE35592.1| unnamed protein product [Mus musculus]
gi|149032426|gb|EDL87317.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_b
[Rattus norvegicus]
gi|344256627|gb|EGW12731.1| DNA-directed RNA polymerase II subunit RPB3 [Cricetulus griseus]
Length = 275
Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 139/181 (76%), Positives = 162/181 (89%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LT+ENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|432119373|gb|ELK38451.1| DNA-directed RNA polymerase II subunit RPB3 [Myotis davidii]
Length = 275
Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 140/181 (77%), Positives = 161/181 (88%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF VE+T+L+VANSLRRVFI E P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIVENTDLAVANSLRRVFIGEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSRNRD D N+Y + DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVDQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|427778091|gb|JAA54497.1| Putative rna polymerase ii subunit polr2c/rpb3 [Rhipicephalus
pulchellus]
Length = 268
Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 146/181 (80%), Positives = 162/181 (89%), Gaps = 7/181 (3%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSVHI++LTDENVKF VEDT+LSVANSLRRVFIAETPT+AIDWVQLEANSTVL
Sbjct: 1 MPYANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAETPTLAIDWVQLEANSTVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSDE+VD++ YSRDCTC D TLDVKC+D+QTRHVTTADL
Sbjct: 61 DEFIAHRLGLIPLTSDEIVDKMQYSRDCTCAD------XXXTLDVKCLDEQTRHVTTADL 114
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
KS+D RVVPVTSR++D D NEYGET+DILIVKLRKGQE++ RAYAKKGFGKEHAKWNPT
Sbjct: 115 KSSDPRVVPVTSRHKD-DTNEYGETEDILIVKLRKGQEVKARAYAKKGFGKEHAKWNPTC 173
Query: 181 G 181
G
Sbjct: 174 G 174
>gi|149032425|gb|EDL87316.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_a
[Rattus norvegicus]
Length = 241
Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 139/181 (76%), Positives = 162/181 (89%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LT+ENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|344289201|ref|XP_003416333.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Loxodonta africana]
Length = 275
Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 139/181 (76%), Positives = 161/181 (88%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPL SD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|432862447|ref|XP_004069860.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Oryzias latipes]
Length = 275
Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 136/181 (75%), Positives = 163/181 (90%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVF++E PT+AIDW+Q++ANS+VL
Sbjct: 1 MPYANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC DFC ECSVE TLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRVGLIPLTSDDIVDKMQYSRDCTCEDFCPECSVELTLDVRCTEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S + RV+PVTSR+RD D N+Y E DDIL+VKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 LSNNPRVIPVTSRSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|348503818|ref|XP_003439459.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Oreochromis niloticus]
Length = 275
Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 137/181 (75%), Positives = 163/181 (90%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANSLRRVF++E PT+AIDW+Q++ANS+VL
Sbjct: 1 MPYANQPTVKITELTDENVKFVIENTDLAVANSLRRVFMSEVPTIAIDWIQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC DFC ECSVE TLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRVGLIPLTSDDIVDKMQYSRDCTCEDFCQECSVELTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S + RV+PVTSR+RD D N+Y E DDIL+VKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 LSNNPRVIPVTSRSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|337497|gb|AAA36586.1| RNA polymerase subunit hRPB 33 [Homo sapiens]
gi|2920709|emb|CAA11842.1| RNA polymerase II subunit [Homo sapiens]
gi|2920711|emb|CAA11843.1| RNA polymerase subunit [Homo sapiens]
Length = 275
Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 139/181 (76%), Positives = 161/181 (88%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPL SD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|14702171|ref|NP_116558.1| DNA-directed RNA polymerase II subunit RPB3 [Homo sapiens]
gi|384475805|ref|NP_001245048.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|114662810|ref|XP_001148305.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 1
[Pan troglodytes]
gi|296231192|ref|XP_002761051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Callithrix
jacchus]
gi|297698834|ref|XP_002826511.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Pongo
abelii]
gi|397506549|ref|XP_003823789.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Pan
paniscus]
gi|402908526|ref|XP_003916990.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Papio
anubis]
gi|403306002|ref|XP_003943535.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Saimiri
boliviensis boliviensis]
gi|426382315|ref|XP_004057753.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Gorilla
gorilla gorilla]
gi|3915850|sp|P19387.2|RPB3_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II 33 kDa polypeptide; Short=RPB33; AltName:
Full=DNA-directed RNA polymerase II subunit C; AltName:
Full=RPB31
gi|2266931|gb|AAC14355.1| RNA polymerase II subunit hRPB33 [Homo sapiens]
gi|3252823|gb|AAC24309.1| RNA polymerase II subunit hRPB33 [Homo sapiens]
gi|12653281|gb|AAH00409.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Homo
sapiens]
gi|13111973|gb|AAH03159.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Homo
sapiens]
gi|20380436|gb|AAH28157.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Homo
sapiens]
gi|49457035|emb|CAG46838.1| POLR2C [Homo sapiens]
gi|60823189|gb|AAX36635.1| polymerase II polypeptide C [synthetic construct]
gi|90079489|dbj|BAE89424.1| unnamed protein product [Macaca fascicularis]
gi|119603332|gb|EAW82926.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|119603333|gb|EAW82927.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|119603335|gb|EAW82929.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|119603336|gb|EAW82930.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|123981016|gb|ABM82337.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [synthetic
construct]
gi|123995821|gb|ABM85512.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [synthetic
construct]
gi|157928942|gb|ABW03756.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [synthetic
construct]
gi|158259685|dbj|BAF85801.1| unnamed protein product [Homo sapiens]
gi|208967078|dbj|BAG73553.1| polymerase (RNA) II (DNA directed) polypeptide C [synthetic
construct]
gi|355710235|gb|EHH31699.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|355756811|gb|EHH60419.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca fascicularis]
gi|383419311|gb|AFH32869.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|384947770|gb|AFI37490.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|410206970|gb|JAA00704.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
gi|410264222|gb|JAA20077.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
gi|410307460|gb|JAA32330.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
gi|410331907|gb|JAA34900.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
Length = 275
Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 139/181 (76%), Positives = 161/181 (88%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPL SD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|335289326|ref|XP_003355849.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Sus
scrofa]
Length = 275
Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 139/181 (76%), Positives = 162/181 (89%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSRNRD D ++Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPSDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|350539355|ref|NP_001232142.1| putative DNA directed RNA polymerase II polypeptide C [Taeniopygia
guttata]
gi|197127827|gb|ACH44325.1| putative DNA directed RNA polymerase II polypeptide C [Taeniopygia
guttata]
Length = 275
Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 139/181 (76%), Positives = 163/181 (90%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLTSDDIVDKMQYSRDCTCDEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S + RV+PVTSR+RD D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNNPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|327287828|ref|XP_003228630.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Anolis
carolinensis]
Length = 275
Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 140/181 (77%), Positives = 163/181 (90%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+L+DENVKF VE+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELSDENVKFIVENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD+VVD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLTSDDVVDKLQYSRDCTCDEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S + RV+PVTSR+RD D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNNPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|260799989|ref|XP_002594919.1| hypothetical protein BRAFLDRAFT_277672 [Branchiostoma floridae]
gi|229280157|gb|EEN50930.1| hypothetical protein BRAFLDRAFT_277672 [Branchiostoma floridae]
Length = 275
Score = 299 bits (766), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 135/181 (74%), Positives = 161/181 (88%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP VH+T+L+DENVKF +EDT+LS+AN++RR+FIAE PT+AIDWVQLEANS+VL
Sbjct: 1 MPYANQPQVHLTELSDENVKFVIEDTDLSMANAVRRIFIAEVPTLAIDWVQLEANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VDR+ YSRDCTC +FC++C++E TLDVKC DDQTRHVTT DL
Sbjct: 61 DEFIAHRVGLIPLTSDDIVDRMQYSRDCTCAEFCADCAIELTLDVKCTDDQTRHVTTRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S++ RVVPVTSR + + YGE DDILIVKLRKGQEL+LRA+AKKGF KEHAKWNPTA
Sbjct: 121 ISSNPRVVPVTSRRAEDETAGYGEADDILIVKLRKGQELKLRAFAKKGFAKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|355712722|gb|AES04444.1| polymerase II polypeptide C, 33kDa [Mustela putorius furo]
Length = 273
Score = 299 bits (766), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 139/180 (77%), Positives = 161/180 (89%)
Query: 2 PYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSD 61
PYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL D
Sbjct: 1 PYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHD 60
Query: 62 EFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK 121
EFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 EFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLI 120
Query: 122 STDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG
Sbjct: 121 SNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 180
>gi|47221930|emb|CAF98942.1| unnamed protein product [Tetraodon nigroviridis]
Length = 275
Score = 299 bits (765), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 135/181 (74%), Positives = 163/181 (90%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVF++E PT+AIDW+Q++ANS+VL
Sbjct: 1 MPYANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A R+GLIPLTSD++VD++ YSRDCTC DFC ECSVE TLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFVAHRVGLIPLTSDDIVDKLQYSRDCTCDDFCPECSVELTLDVRCTEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S + RV+PVTSR+RD D N+Y E DDIL+VKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 LSNNPRVIPVTSRSRDNDPNDYVEQDDILVVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|50753469|ref|XP_414001.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Gallus
gallus]
Length = 275
Score = 299 bits (765), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 138/181 (76%), Positives = 163/181 (90%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLTSDDIVDKMQYSRDCTCDEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S + RV+PVTSR+RD D N+Y E DDILIVKLRKGQEL+LRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNNPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|291390190|ref|XP_002711589.1| PREDICTED: DNA directed RNA polymerase II polypeptide C
[Oryctolagus cuniculus]
Length = 275
Score = 298 bits (763), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 139/181 (76%), Positives = 161/181 (88%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ SRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLTSDDIVDKLQNSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|269784633|ref|NP_001161428.1| DNA-directed RNA polymerase II subunit RPB3 [Danio rerio]
gi|28278474|gb|AAH46047.1| Polymerase (RNA) II (DNA directed) polypeptide C [Danio rerio]
Length = 275
Score = 298 bits (763), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 135/181 (74%), Positives = 163/181 (90%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+L+DENVKF +E+T+L+VANS+RRVF++E PT+AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A R+GLIPLTSD++VD++ YSRDCTC DFC ECSVE TLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFVAHRVGLIPLTSDDIVDKMQYSRDCTCDDFCPECSVELTLDVRCTEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S + RV+PVTSR+RD D N+Y E DDIL+VKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 LSNNPRVIPVTSRSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|395839490|ref|XP_003792622.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Otolemur
garnettii]
Length = 275
Score = 298 bits (762), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 138/181 (76%), Positives = 161/181 (88%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPL SD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSR+RD D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 VSNHHRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|74202237|dbj|BAE23500.1| unnamed protein product [Mus musculus]
Length = 332
Score = 298 bits (762), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 138/180 (76%), Positives = 161/180 (89%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LT+ENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
>gi|126296213|ref|XP_001365715.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Monodelphis domestica]
Length = 275
Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 138/181 (76%), Positives = 162/181 (89%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSR+RD D ++Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNTPRVIPVTSRSRDNDPSDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|67970900|dbj|BAE01792.1| unnamed protein product [Macaca fascicularis]
Length = 251
Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 138/181 (76%), Positives = 160/181 (88%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPL SD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 IPNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|395506007|ref|XP_003757327.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 1
[Sarcophilus harrisii]
Length = 275
Score = 297 bits (760), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 138/181 (76%), Positives = 161/181 (88%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSR+RD D N+Y E DDILIVKLRKGQELRLRAYAKKG GKEHAKWNPTA
Sbjct: 121 ISNTPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGIGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|225714130|gb|ACO12911.1| DNA-directed RNA polymerase II subunit RPB3 [Lepeophtheirus
salmonis]
Length = 279
Score = 295 bits (756), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 137/182 (75%), Positives = 164/182 (90%), Gaps = 1/182 (0%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPS++IT+LT++ VKF +EDT+LSVAN++RRV IAETP MAIDWVQLE+NSTVLS
Sbjct: 1 MPYANQPSINITELTEDLVKFTLEDTDLSVANAIRRVMIAETPIMAIDWVQLESNSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+G+IPLTSD+ VD + YSRDCTC DFC EC+VEFTLDVKC ++ TR+VT+ADL
Sbjct: 61 DEFIAHRLGMIPLTSDDAVDSMQYSRDCTCTDFCRECAVEFTLDVKCHEETTRNVTSADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYG-ETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
KS+D +V+PVTSRN++ D +EYG E DDILIVKLRKGQEL++RAYAKKGF KEHAKWNPT
Sbjct: 121 KSSDPKVIPVTSRNQEEDGHEYGNENDDILIVKLRKGQELKVRAYAKKGFAKEHAKWNPT 180
Query: 180 AG 181
AG
Sbjct: 181 AG 182
>gi|291242309|ref|XP_002741050.1| PREDICTED: DNA directed RNA polymerase II polypeptide C-like
[Saccoglossus kowalevskii]
Length = 275
Score = 295 bits (754), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 134/181 (74%), Positives = 161/181 (88%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSV +++L+D+NVKF VEDT+LSVAN+LRRVFIAE T+AIDW+Q+EANS+VL
Sbjct: 1 MPYANQPSVRLSELSDDNVKFSVEDTDLSVANALRRVFIAEVATIAIDWIQIEANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFI+ R+GLIPLTSDEVVDR+ YSRDCTC +FC ECSV+F LDVKC DDQTRHVT+ DL
Sbjct: 61 DEFISHRVGLIPLTSDEVVDRMQYSRDCTCDEFCPECSVDFMLDVKCTDDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+++ RVVPVTSR+RD + +YG+ DDILIVKLRKGQEL+L+AY +KGF KEHAKWNPTA
Sbjct: 121 MTSNPRVVPVTSRHRDDEAGDYGDNDDILIVKLRKGQELKLKAYGRKGFAKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|156371210|ref|XP_001628658.1| predicted protein [Nematostella vectensis]
gi|156215640|gb|EDO36595.1| predicted protein [Nematostella vectensis]
Length = 274
Score = 294 bits (752), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 137/181 (75%), Positives = 157/181 (86%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSV I +LTDENVKF +E T +S+AN LRR+FIAETPT+AIDWVQ+E N++VL
Sbjct: 1 MPYANQPSVKILELTDENVKFIIEKTGMSMANGLRRIFIAETPTIAIDWVQIENNTSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GL+PLTSDEVVDR+ +SRDCTC +FC +CS+EFTLDVKC DD TRHVTT DL
Sbjct: 61 DEFIAHRLGLVPLTSDEVVDRMTFSRDCTCDEFCDDCSIEFTLDVKCTDDSTRHVTTQDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
ST+ R VPVTSRNR+ D EY E DDILIVKLRKGQEL+LRA+AKKGF KEHAKWNPTA
Sbjct: 121 ISTNPRCVPVTSRNREDDSREYMEQDDILIVKLRKGQELKLRAFAKKGFAKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|225707818|gb|ACO09755.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Osmerus mordax]
Length = 275
Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 133/181 (73%), Positives = 162/181 (89%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+L+DENVKF +E+T+L+VANS+RRVF++E T+AIDW+Q++ANS+VL
Sbjct: 1 MPYANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVATIAIDWIQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC DFC ECSVE TLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRVGLIPLTSDDIVDKMQYSRDCTCDDFCPECSVELTLDVRCTEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S + RV+PVTSR+RD D N+Y E DDI++VKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 LSNNPRVIPVTSRSRDNDPNDYVEQDDIILVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|218931178|ref|NP_001135345.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
gi|209734758|gb|ACI68248.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
gi|223647266|gb|ACN10391.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
gi|223673145|gb|ACN12754.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
Length = 275
Score = 293 bits (749), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 135/181 (74%), Positives = 160/181 (88%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP V IT+LTDENVKF +E+T+LSVANS+RRVF++E T+AIDW+Q++ANS+V+
Sbjct: 1 MPYANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD+VVD++ YSRDCTC DFC ECSVE TLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRVGLIPLTSDDVVDKMQYSRDCTCDDFCPECSVELTLDVRCTEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTS++RD D N+Y E DDIL+VKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 LSNHPRVIPVTSKSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|225716034|gb|ACO13863.1| DNA-directed RNA polymerase II subunit RPB3 [Esox lucius]
Length = 275
Score = 292 bits (748), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 135/181 (74%), Positives = 160/181 (88%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP V IT+LTDENVKF +E+T+LSVANS+RRVF++E T+AIDW+Q++ANS+V+
Sbjct: 1 MPYANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD+VVD++ YSRDCTC DFC ECSVE TLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRVGLIPLTSDDVVDKMQYSRDCTCDDFCPECSVELTLDVRCTEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTS++RD D N+Y E DDIL+VKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 LSNHPRVIPVTSKSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|209730678|gb|ACI66208.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
Length = 275
Score = 291 bits (744), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 134/181 (74%), Positives = 159/181 (87%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP V IT+LTDENVKF +E+T+LSVANS+RRVF++E T+AIDW+Q++ANS+V+
Sbjct: 1 MPYANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD+VVD++ YSRDCTC DFC ECSVE TLD +C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRVGLIPLTSDDVVDKMQYSRDCTCDDFCPECSVELTLDARCTEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTS++RD D N+Y E DDIL+VKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 LSNHPRVIPVTSKSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|2829844|sp|P97760.1|RPB3_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II 33 kDa polypeptide; Short=RPB33; AltName:
Full=DNA-directed RNA polymerase II subunit C; AltName:
Full=RPB31
gi|1850789|dbj|BAA12205.1| the third largest RNA polymerase II subunit [Mus musculus]
Length = 275
Score = 291 bits (744), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 135/181 (74%), Positives = 158/181 (87%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LT+ENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ NS+VL
Sbjct: 1 MPYANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDGNSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAY KK GKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYVKKRSGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|332017912|gb|EGI58566.1| DNA-directed RNA polymerase II subunit RPB3 [Acromyrmex echinatior]
Length = 256
Score = 290 bits (743), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 138/181 (76%), Positives = 153/181 (84%), Gaps = 20/181 (11%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSVHI+DLT+ENVKFQVEDTELSVANS+RRVFIAETPTMAIDW+QLEANSTV
Sbjct: 1 MPYANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTV-- 58
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
VDRI Y+RDC C+DFC ECSVEFTLDVKC ++QTRHVTTAD
Sbjct: 59 ------------------VDRIQYTRDCQCMDFCPECSVEFTLDVKCTEEQTRHVTTADF 100
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
KS+D RV+PVTSR+R+ D +EYGETD+ILIVKLRKGQEL+LRAYAKKGFGKEHAKWNPTA
Sbjct: 101 KSSDPRVLPVTSRHREDDASEYGETDEILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTA 160
Query: 181 G 181
G
Sbjct: 161 G 161
>gi|391329125|ref|XP_003739027.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Metaseiulus occidentalis]
Length = 277
Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/181 (75%), Positives = 158/181 (87%), Gaps = 1/181 (0%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP V ITDL++ENVKF +EDT+LSVANS+RRV IAETPTMAIDWVQLEANS+VL
Sbjct: 1 MPYANQPRVTITDLSNENVKFVLEDTDLSVANSIRRVMIAETPTMAIDWVQLEANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTS+E+V+ + Y+RDC+CVDFC++CSVEF LDVKC DD TRHVTTADL
Sbjct: 61 DEFIAHRLGLIPLTSEEIVEHMQYNRDCSCVDFCTDCSVEFILDVKCTDDATRHVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
KS D R VPVTS+ RD D EYG+ +DILIVKLRKGQE++ YA+KGFGKEHAKWNPT
Sbjct: 121 KSADIRCVPVTSKRRD-DTAEYGQEEDILIVKLRKGQEVKAICYARKGFGKEHAKWNPTC 179
Query: 181 G 181
G
Sbjct: 180 G 180
>gi|387018210|gb|AFJ51223.1| DNA-directed RNA polymerase II subunit RPB3-like [Crotalus
adamanteus]
Length = 275
Score = 288 bits (738), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 133/181 (73%), Positives = 160/181 (88%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+L+D+NVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELSDDNVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD VVD++ YSRDC C +FC +CSVEF+LDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLTSDGVVDKLQYSRDCNCDEFCPDCSVEFSLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S +++V+PVTSR RD D N+Y E DDILIVKLRKGQELRLRAYA KGFGKEHAKWNPTA
Sbjct: 121 ISNNSQVIPVTSRRRDNDPNDYVEPDDILIVKLRKGQELRLRAYATKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|321475674|gb|EFX86636.1| hypothetical protein DAPPUDRAFT_313021 [Daphnia pulex]
Length = 274
Score = 285 bits (729), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 137/181 (75%), Positives = 161/181 (88%), Gaps = 2/181 (1%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP++ +T+LT+ENVKFQ+ DT+LSVANSLRRVFIAETPT+AIDWVQ EANSTVL
Sbjct: 1 MPYANQPNLKLTELTEENVKFQISDTDLSVANSLRRVFIAETPTLAIDWVQFEANSTVLF 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A R+GLIPLTSDE V+++ YSRDCTC DFC +CSVEFTLDVKC +D TR+VTTADL
Sbjct: 61 DEFLAHRVGLIPLTSDESVEKMQYSRDCTCPDFCVDCSVEFTLDVKCSEDVTRNVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
KSTD RVVP TS+ RD + + + ++ILIVKLRKGQEL++RAYAKKGFGKEHAKWNPTA
Sbjct: 121 KSTDPRVVPATSK-RDEEPPDDND-NEILIVKLRKGQELKMRAYAKKGFGKEHAKWNPTA 178
Query: 181 G 181
G
Sbjct: 179 G 179
>gi|221114057|ref|XP_002158521.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Hydra
magnipapillata]
Length = 273
Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 130/181 (71%), Positives = 155/181 (85%), Gaps = 1/181 (0%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYA+QP V I + TD+N+KF +E+T+LSVANSLRR+FIAE PT+AIDWVQ+E N++VL
Sbjct: 1 MPYASQPRVKILEWTDDNLKFILENTDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA RIGLIPLTSDE VD++ YSRDCTC +FC ECSV+FTLDVKC + TRHVT+ DL
Sbjct: 61 DEFIAHRIGLIPLTSDEKVDKMCYSRDCTCSEFCDECSVKFTLDVKCTGETTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S D +V+PVTSR +D D YGETD+I+IVKLRKGQEL+L A+AKKGFGKEHAKWNPTA
Sbjct: 121 ISEDPKVIPVTSRIKDDDTG-YGETDEIVIVKLRKGQELKLHAFAKKGFGKEHAKWNPTA 179
Query: 181 G 181
G
Sbjct: 180 G 180
>gi|410983639|ref|XP_003998146.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3, partial
[Felis catus]
Length = 260
Score = 275 bits (704), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 128/166 (77%), Positives = 148/166 (89%)
Query: 16 DENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTS 75
DENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL DEFIA R+GLIPLTS
Sbjct: 1 DENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTS 60
Query: 76 DEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNR 135
D++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL S RV+PVTSRNR
Sbjct: 61 DDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNR 120
Query: 136 DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
D D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG
Sbjct: 121 DNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 166
>gi|441597761|ref|XP_004093284.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB3 [Nomascus leucogenys]
Length = 258
Score = 272 bits (695), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 128/182 (70%), Positives = 154/182 (84%), Gaps = 1/182 (0%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSV-ANSLRRVFIAETPTMAIDWVQLEANSTVL 59
MPYANQP+V IT+LTDENVKF +E+T+L++ N + ++ + +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLALXVNLMAKLHVCFFHFLAIDWVQIDANSSVL 60
Query: 60 SDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTAD 119
DEFIA R+GLIPL SD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ D
Sbjct: 61 HDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRD 120
Query: 120 LKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
L S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT
Sbjct: 121 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 180
Query: 180 AG 181
AG
Sbjct: 181 AG 182
>gi|196004242|ref|XP_002111988.1| hypothetical protein TRIADDRAFT_24132 [Trichoplax adhaerens]
gi|190585887|gb|EDV25955.1| hypothetical protein TRIADDRAFT_24132 [Trichoplax adhaerens]
Length = 274
Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 126/181 (69%), Positives = 150/181 (82%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYA+QP V I DLT+ENVKF +E+T+LSVANSLRR+FIA PT+AIDWVQ N++VLS
Sbjct: 1 MPYASQPRVTIPDLTNENVKFILENTDLSVANSLRRIFIANVPTLAIDWVQFVNNTSVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLT DEV+DR+ YSRDC CV+ C ECSVEFTLDV+C DDQTRHVTT DL
Sbjct: 61 DEFIAHRLGLIPLTCDEVIDRLQYSRDCNCVEHCPECSVEFTLDVRCNDDQTRHVTTRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S+D+RVVPVT+R + D + DDILI KLR+GQE++++AYAKKG G EHAKWNPTA
Sbjct: 121 ISSDSRVVPVTTRYGEDDTVYGDQEDDILIAKLRRGQEIKIKAYAKKGLGTEHAKWNPTA 180
Query: 181 G 181
Sbjct: 181 S 181
>gi|340372125|ref|XP_003384595.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Amphimedon queenslandica]
Length = 274
Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 122/181 (67%), Positives = 151/181 (83%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYA P V ++++TDENVKF +E T+LS+AN+LRR+FIAE PT+AIDW+ L ANSTVL
Sbjct: 1 MPYAKNPLVKVSEITDENVKFIIERTDLSMANALRRIFIAEVPTLAIDWIHLIANSTVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA RIGL+PLTSD VD++ YSR+CTC DFC C++E+TLDVKC D+ TR VTT DL
Sbjct: 61 DEFIAHRIGLVPLTSDGTVDKMQYSRECTCNDFCPMCAIEYTLDVKCNDESTRAVTTRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S++ V+PVTS R++D ++YG TDDILIVKLRKGQEL+L+AYA KGFGKEHAKW+P A
Sbjct: 121 LSSNQSVIPVTSMVRESDTSDYGLTDDILIVKLRKGQELKLKAYATKGFGKEHAKWSPAA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|427778887|gb|JAA54895.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 250
Score = 266 bits (680), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 132/181 (72%), Positives = 146/181 (80%), Gaps = 25/181 (13%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSVHI++LTDENVKF VEDT+LSVANSLRRVFIAETPT+AIDWVQLEANSTVL
Sbjct: 1 MPYANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAETPTLAIDWVQLEANSTVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSDE+VD++ YSRDCTC DF DL
Sbjct: 61 DEFIAHRLGLIPLTSDEIVDKMQYSRDCTCADF------------------------XDL 96
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
KS+D RVVPVTSR++D D NEYGET+DILIVKLRKGQE++ RAYAKKGFGKEHAKWNPT
Sbjct: 97 KSSDPRVVPVTSRHKD-DTNEYGETEDILIVKLRKGQEVKARAYAKKGFGKEHAKWNPTC 155
Query: 181 G 181
G
Sbjct: 156 G 156
>gi|443691223|gb|ELT93136.1| hypothetical protein CAPTEDRAFT_155833 [Capitella teleta]
Length = 270
Score = 264 bits (674), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 125/181 (69%), Positives = 153/181 (84%), Gaps = 5/181 (2%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYAN+P+V IT+ T EN+KF +EDT+LSVAN+LRRVFIAETP +AIDWVQ+ AN+TVL
Sbjct: 1 MPYANKPTVRITESTSENLKFILEDTDLSVANALRRVFIAETPIIAIDWVQINANTTVLC 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A R+GLIPL SD+V+D++ YSRDCTC +FC ECSVEFTLDVKC DDQTR VT+ADL
Sbjct: 61 DEFLAQRVGLIPLASDDVIDKMQYSRDCTCEEFCQECSVEFTLDVKCSDDQTRSVTSADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S ++ VVPVTS+ +D+ + G ILIVKLRKGQ+L+L+AYA+KGF KEHAKWNPT
Sbjct: 121 ISNNSEVVPVTSK-QDSTQEQKG----ILIVKLRKGQDLKLKAYARKGFAKEHAKWNPTC 175
Query: 181 G 181
G
Sbjct: 176 G 176
>gi|198422271|ref|XP_002119444.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 2 [Ciona intestinalis]
gi|198422273|ref|XP_002119542.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 3 [Ciona intestinalis]
gi|198422275|ref|XP_002119306.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 1 [Ciona intestinalis]
Length = 277
Score = 263 bits (672), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 121/176 (68%), Positives = 147/176 (83%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MP+ANQP+V IT+LT++NVKF VEDT+LS ANS+RRVFIAE PT+AIDW+Q+E NS+VL+
Sbjct: 1 MPFANQPTVSITELTEDNVKFVVEDTDLSTANSVRRVFIAEVPTLAIDWIQIEENSSVLN 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF++ RIGLIPLTSD+VVD+I YSRDC C DFC +CSVEF LDVKC + TR VTT DL
Sbjct: 61 DEFLSHRIGLIPLTSDDVVDKIQYSRDCMCDDFCQDCSVEFYLDVKCTGEGTRQVTTRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
S + +VVP+TSR+R +GE DDILI KLRKGQ L+ +A+AKKGFGKEHAKW
Sbjct: 121 ISMNPKVVPITSRSRGDSSKSFGEQDDILIAKLRKGQSLKFKAFAKKGFGKEHAKW 176
>gi|326927174|ref|XP_003209769.1| PREDICTED: ubiquinone biosynthesis protein COQ9, mitochondrial-like
[Meleagris gallopavo]
Length = 549
Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/174 (70%), Positives = 144/174 (82%), Gaps = 3/174 (1%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
+V IT+LT N Q ANS+RRVFIAE P +AIDWVQ++ANS+VL DEFIA R
Sbjct: 285 AVTITNLTGLN---QXXXXXXXXANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHR 341
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL S + RV
Sbjct: 342 LGLIPLTSDDIVDKMQYSRDCTCDEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNNPRV 401
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
+PVTSR+RD D N+Y E DDILIVKLRKGQEL+LRAYAKKGFGKEHAKWNPTAG
Sbjct: 402 IPVTSRSRDNDPNDYVEQDDILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTAG 455
>gi|324521335|gb|ADY47834.1| DNA-directed RNA polymerase II subunit RPB3 [Ascaris suum]
Length = 275
Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 122/181 (67%), Positives = 145/181 (80%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP V I+ L DE VKF +EDT+LSVANSLRR+FIAE PTMAIDWVQ+EAN++VL
Sbjct: 1 MPYANQPRVTISMLNDEMVKFVLEDTDLSVANSLRRIFIAEVPTMAIDWVQIEANTSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTS+ VVD+ YSRDC C DFC EC+VE L V+ D+ TR VTTADL
Sbjct: 61 DEFIAHRMGLIPLTSNNVVDKFQYSRDCQCNDFCPECAVEMRLSVRWDDEGTRSVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+S++A VVP R+ E G ++DILIVKLR+GQE+R++ YAKKGFGKEHAKWNPT
Sbjct: 121 ESSNAAVVPACGRHLQGRNAEDGTSEDILIVKLRRGQEIRMKCYAKKGFGKEHAKWNPTC 180
Query: 181 G 181
G
Sbjct: 181 G 181
>gi|449268851|gb|EMC79688.1| DNA-directed RNA polymerase II subunit RPB3, partial [Columba
livia]
Length = 248
Score = 256 bits (654), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 119/154 (77%), Positives = 137/154 (88%)
Query: 28 LSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRD 87
L VANS+RRVFIAE P +AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRD
Sbjct: 1 LRVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKMQYSRD 60
Query: 88 CTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDD 147
CTC +FC ECSVEFTLDV+C +DQTRHVT+ DL S + RV+PVTSR+RD D N+Y E DD
Sbjct: 61 CTCDEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNNPRVIPVTSRSRDNDPNDYVEQDD 120
Query: 148 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG
Sbjct: 121 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 154
>gi|395506009|ref|XP_003757328.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 2
[Sarcophilus harrisii]
Length = 252
Score = 249 bits (635), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 122/181 (67%), Positives = 140/181 (77%), Gaps = 23/181 (12%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVFIAE P
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPI---------------- 44
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
IGLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 45 -------IGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 97
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSR+RD D N+Y E DDILIVKLRKGQELRLRAYAKKG GKEHAKWNPTA
Sbjct: 98 ISNTPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGIGKEHAKWNPTA 157
Query: 181 G 181
G
Sbjct: 158 G 158
>gi|226490156|emb|CAX69320.1| DNA-directed RNA polymerase II subunit C [Schistosoma japonicum]
Length = 266
Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 117/181 (64%), Positives = 142/181 (78%), Gaps = 2/181 (1%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP V +T +EN+KF +E+T+LSVAN++RRV IAE PT+AIDWVQ+E N+T+L+
Sbjct: 1 MPYANQPIVTLTSFNNENIKFVLEETDLSVANAIRRVCIAEVPTLAIDWVQIEENNTMLN 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLT D VVD++ Y R+C C +FC +CSVE TLDV C D RHVT ADL
Sbjct: 61 DEFIAQRVGLIPLTCDNVVDKMTYFRECPCREFCEQCSVELTLDVCCTTDAPRHVTGADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S++ V PV S RDAD + Y + ILIVK+RKGQ L+LRA AKKGFGKEHAKWNPTA
Sbjct: 121 ISSNRDVQPVPS--RDADESSYVGQESILIVKMRKGQRLKLRAIAKKGFGKEHAKWNPTA 178
Query: 181 G 181
G
Sbjct: 179 G 179
>gi|256089309|ref|XP_002580754.1| DNA-directed rna polymerase II subunit [Schistosoma mansoni]
gi|350646602|emb|CCD58722.1| DNA-directed rna polymerase II subunit,putative [Schistosoma
mansoni]
Length = 266
Score = 243 bits (620), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/181 (64%), Positives = 142/181 (78%), Gaps = 2/181 (1%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP V +T +EN+KF +E+T+LSVAN++RRV IAE PT+AIDWVQ+E N+T+L+
Sbjct: 1 MPYANQPIVTLTSFNNENIKFVLEETDLSVANAIRRVCIAEVPTLAIDWVQIEDNNTMLN 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLT D VVD++ Y R+C C +FC +CSVE TLDV C D RHVT ADL
Sbjct: 61 DEFIAQRVGLIPLTCDNVVDKMTYFRECPCREFCEQCSVELTLDVCCTTDAPRHVTGADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S++ V PV S RDAD + Y + ILIVK+RKGQ L+LRA AKKGFGKEHAKWNPTA
Sbjct: 121 ISSNRDVQPVPS--RDADESSYVGQESILIVKMRKGQRLKLRAIAKKGFGKEHAKWNPTA 178
Query: 181 G 181
G
Sbjct: 179 G 179
>gi|358341556|dbj|GAA27309.2| DNA-directed RNA polymerase II subunit RPB3 [Clonorchis sinensis]
Length = 266
Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 117/181 (64%), Positives = 140/181 (77%), Gaps = 2/181 (1%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP V +T +EN KF +E+T+LSVAN++RRV IAE PT+AIDWVQ+E N+T+L+
Sbjct: 1 MPYANQPIVTLTSYNNENCKFIIEETDLSVANAIRRVCIAEVPTLAIDWVQIEENNTMLN 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD VVD++ Y R+C C +FC +CSVE TLDV C D RHVT ADL
Sbjct: 61 DEFIAQRVGLIPLTSDSVVDKMAYFRECPCREFCEQCSVELTLDVCCTTDAPRHVTGADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S++ V PV S RD D Y + ILIVK+RKGQ L+LRA AKKGFGKEHAKWNPTA
Sbjct: 121 LSSNRDVQPVPS--RDPDDAAYVGQESILIVKMRKGQRLKLRAIAKKGFGKEHAKWNPTA 178
Query: 181 G 181
G
Sbjct: 179 G 179
>gi|170581298|ref|XP_001895623.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Brugia malayi]
gi|158597360|gb|EDP35528.1| DNA-directed RNA polymerase II 33 kDa polypeptide, putative [Brugia
malayi]
Length = 275
Score = 238 bits (606), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 117/182 (64%), Positives = 144/182 (79%), Gaps = 6/182 (3%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP V IT L DE V+F +EDT+LSVANSLRR+F+AE PTMAIDWVQ+E+NS+VL
Sbjct: 1 MPYANQPHVAITALNDEIVRFVLEDTDLSVANSLRRIFMAEVPTMAIDWVQIESNSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD VVD++ +SRDC C +FC C+VE L V+C D+ R VTTADL
Sbjct: 61 DEFIAHRLGLIPLTSDSVVDQMQFSRDCQCTEFCQFCAVEMRLRVRCDDEGIRAVTTADL 120
Query: 121 KSTDARVVP---VTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
++++ V P V RNR+A+ N +DDILIVKLRKGQ++ ++ AKKGFGKEHAKWN
Sbjct: 121 ETSNPDVAPACGVHIRNRNAEEN---ASDDILIVKLRKGQDIDIKCIAKKGFGKEHAKWN 177
Query: 178 PT 179
PT
Sbjct: 178 PT 179
>gi|402590881|gb|EJW84811.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Wuchereria bancrofti]
Length = 275
Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/182 (63%), Positives = 144/182 (79%), Gaps = 6/182 (3%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP V IT L DE V+F +EDT+LSVANSLRR+F+AE PTMA+DWVQ+E+NS+VL
Sbjct: 1 MPYANQPHVAITALNDEIVRFVLEDTDLSVANSLRRIFMAEVPTMAVDWVQIESNSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD VVD++ +SRDC C +FC C+VE L V+C D+ R VTTADL
Sbjct: 61 DEFIAHRLGLIPLTSDSVVDQMQFSRDCQCTEFCQFCAVEMRLRVRCDDEGIRAVTTADL 120
Query: 121 KSTDARVVP---VTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
++++ V P V RNR+A+ N +DDILIVKLRKGQ++ ++ AKKGFGKEHAKWN
Sbjct: 121 ETSNPDVAPACGVHIRNRNAEEN---ASDDILIVKLRKGQDIDIKCIAKKGFGKEHAKWN 177
Query: 178 PT 179
PT
Sbjct: 178 PT 179
>gi|312083749|ref|XP_003143992.1| DNA-directed RNA polymerase II polypeptide [Loa loa]
gi|307760845|gb|EFO20079.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Loa loa]
Length = 275
Score = 235 bits (600), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 116/182 (63%), Positives = 143/182 (78%), Gaps = 6/182 (3%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP V IT L DE V+F +EDT+LSVANSLRR+F+AE PTMAIDWVQ+E+N++VL
Sbjct: 1 MPYANQPHVAITALNDEIVRFVLEDTDLSVANSLRRIFMAEVPTMAIDWVQIESNTSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD VVD++ +SRDC C +FC C+VE L V+C D+ R VTTADL
Sbjct: 61 DEFIAHRLGLIPLTSDSVVDQMQFSRDCQCTEFCQFCAVEMRLRVRCDDEGIRAVTTADL 120
Query: 121 KSTDARVVP---VTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
++++ V P V RNR+A E +DDILIVKLRKGQ++ ++ AKKGFGKEHAKWN
Sbjct: 121 ETSNPDVAPACGVHIRNRNA---EESASDDILIVKLRKGQDVDIKCIAKKGFGKEHAKWN 177
Query: 178 PT 179
PT
Sbjct: 178 PT 179
>gi|390367669|ref|XP_003731306.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like,
partial [Strongylocentrotus purpuratus]
Length = 262
Score = 234 bits (598), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 108/153 (70%), Positives = 134/153 (87%), Gaps = 2/153 (1%)
Query: 29 SVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC 88
SVANS+RR +AE PT+AIDWV+++ANS+VL DEFI+ R+GLIPLTSDEVVD++ ++RDC
Sbjct: 16 SVANSIRRTILAEVPTIAIDWVEIQANSSVLHDEFISHRVGLIPLTSDEVVDKLNFNRDC 75
Query: 89 TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDI 148
C +FCS+CSVE +LDVKC DDQTRHVT+ DL S++ +VVPV SRN+++ ++YGE DDI
Sbjct: 76 GCEEFCSDCSVELSLDVKCTDDQTRHVTSRDLLSSNQKVVPVPSRNQES--SDYGEVDDI 133
Query: 149 LIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
LIVKLRKGQELRLRAYAKKGFGK+HAKW PTA
Sbjct: 134 LIVKLRKGQELRLRAYAKKGFGKDHAKWVPTAA 166
>gi|390368205|ref|XP_781436.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like isoform
1, partial [Strongylocentrotus purpuratus]
Length = 388
Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 107/152 (70%), Positives = 133/152 (87%), Gaps = 2/152 (1%)
Query: 30 VANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCT 89
VANS+RR +AE PT+AIDWV+++ANS+VL DEFI+ R+GLIPLTSDEVVD++ ++RDC
Sbjct: 143 VANSIRRTILAEVPTIAIDWVEIQANSSVLHDEFISHRVGLIPLTSDEVVDKLNFNRDCG 202
Query: 90 CVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDIL 149
C +FCS+CSVE +LDVKC DDQTRHVT+ DL S++ +VVPV SRN+++ ++YGE DDIL
Sbjct: 203 CEEFCSDCSVELSLDVKCTDDQTRHVTSRDLLSSNQKVVPVPSRNQES--SDYGEVDDIL 260
Query: 150 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
IVKLRKGQELRLRAYAKKGFGK+HAKW PTA
Sbjct: 261 IVKLRKGQELRLRAYAKKGFGKDHAKWVPTAA 292
>gi|345328382|ref|XP_001511558.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Ornithorhynchus anatinus]
Length = 234
Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 104/135 (77%), Positives = 119/135 (88%)
Query: 47 IDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVK 106
IDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+
Sbjct: 6 IDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVR 65
Query: 107 CVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAK 166
C +DQTRHVT+ DL S RV+PVTSR+RD D N+Y E DDILIVKLRKGQELRLRAYAK
Sbjct: 66 CNEDQTRHVTSRDLISNSPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAK 125
Query: 167 KGFGKEHAKWNPTAG 181
KGFGKEH KWNPTAG
Sbjct: 126 KGFGKEHTKWNPTAG 140
>gi|268566109|ref|XP_002639637.1| C. briggsae CBR-RPB-3 protein [Caenorhabditis briggsae]
Length = 280
Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 110/186 (59%), Positives = 139/186 (74%), Gaps = 6/186 (3%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP++ +T+LT++ +KF + DT+LSVANSLRRVF+AE PT+AIDWVQ+E N++VL
Sbjct: 1 MPYANQPNIEVTELTNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIP SD V+++ Y+R C C +FC ECS+ F L KC D+ T VTTADL
Sbjct: 61 DEFIAHRMGLIPFLSDYHVEKMQYTR-CECAEFCDECSIPFILQTKCTDEATLAVTTADL 119
Query: 121 K--STDARVVPVTS---RNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
+ + V P R R A +E+ ++ILIVKLRKGQEL L+AYAKKGFGKEHAK
Sbjct: 120 RPLGVETTVRPACGEALRERGAVRDEFHAREEILIVKLRKGQELNLKAYAKKGFGKEHAK 179
Query: 176 WNPTAG 181
WNPT G
Sbjct: 180 WNPTCG 185
>gi|86560996|ref|NP_492361.2| Protein RPB-3 [Caenorhabditis elegans]
gi|74834695|emb|CAB02268.2| Protein RPB-3 [Caenorhabditis elegans]
Length = 282
Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 108/187 (57%), Positives = 138/187 (73%), Gaps = 6/187 (3%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP++ +T+LT++ +KF + DT+LSVANSLRRVF+AE PT+AIDWVQ+E N++VL
Sbjct: 1 MPYANQPNIEVTELTNDIIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIP SD V+++ Y+RDC C +FC ECS+ F L +KC D+ T VTT L
Sbjct: 61 DEFIAHRMGLIPFISDYHVEKMQYTRDCECAEFCDECSIPFILQMKCKDEATLAVTTEHL 120
Query: 121 ---KSTDARVVPVTS---RNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
+ D V P R R + +E+ ++ILIVKLRKGQEL L+AY KKGFGKEHA
Sbjct: 121 MPMHNLDTTVRPACGKALRERGSTRDEFHNREEILIVKLRKGQELNLKAYVKKGFGKEHA 180
Query: 175 KWNPTAG 181
KWNPT G
Sbjct: 181 KWNPTCG 187
>gi|341882009|gb|EGT37944.1| hypothetical protein CAEBREN_16087 [Caenorhabditis brenneri]
gi|341882040|gb|EGT37975.1| hypothetical protein CAEBREN_14407 [Caenorhabditis brenneri]
Length = 281
Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/186 (58%), Positives = 137/186 (73%), Gaps = 5/186 (2%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V +T+L+++ +KF + DT+LSVANSLRRVF+AE PT+AIDWVQ+E N++VL
Sbjct: 1 MPYANQPNVEVTELSNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIP SD V+++ Y+R+C C +FC ECS+ F L +KC D+ T VTT L
Sbjct: 61 DEFIAHRMGLIPFISDYHVEKMQYTRECECAEFCDECSIPFILQMKCKDEATLAVTTEHL 120
Query: 121 KST--DARVVPVTS---RNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
D V P R R + E+ ++ILIVKLRKGQEL L+AYAKKGFGKEHAK
Sbjct: 121 IPLKDDTTVRPACGKALRERGSAREEFHNREEILIVKLRKGQELNLKAYAKKGFGKEHAK 180
Query: 176 WNPTAG 181
WNPT G
Sbjct: 181 WNPTTG 186
>gi|149032428|gb|EDL87319.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_d
[Rattus norvegicus]
Length = 165
Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 104/146 (71%), Positives = 127/146 (86%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LT+ENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETD 146
S RV+PVTSRNRD D N+Y E D
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQD 146
>gi|308499659|ref|XP_003112015.1| CRE-RPB-3 protein [Caenorhabditis remanei]
gi|308268496|gb|EFP12449.1| CRE-RPB-3 protein [Caenorhabditis remanei]
Length = 297
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/202 (53%), Positives = 140/202 (69%), Gaps = 21/202 (10%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP++ +T+L+++ +KF + DT+LSVANSLRRVF+AE PT+AIDWVQ+E N++VL
Sbjct: 1 MPYANQPNIEVTELSNDLMKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIP SD V+++ Y+R+C C +FC ECS+ F L +KC D+ T VTTADL
Sbjct: 61 DEFIAHRMGLIPFLSDYHVEKMQYTRECECAEFCDECSIPFILQMKCKDEATLAVTTADL 120
Query: 121 KSTDARVVPVTS---------------------RNRDADMNEYGETDDILIVKLRKGQEL 159
+ + V V S R R ++ ++ILIVKLRKGQEL
Sbjct: 121 RCMNNDTVIVCSKKVVTILACFQTVRPACGKALRERGTGREDFHNREEILIVKLRKGQEL 180
Query: 160 RLRAYAKKGFGKEHAKWNPTAG 181
L+AYAKKGFGKEHAKWNPT G
Sbjct: 181 NLKAYAKKGFGKEHAKWNPTCG 202
>gi|432098388|gb|ELK28188.1| DNA-directed RNA polymerase II subunit RPB3 [Myotis davidii]
Length = 303
Score = 205 bits (521), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 105/178 (58%), Positives = 121/178 (67%), Gaps = 40/178 (22%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
+NQP+V IT+LTDENVKF VE+T+L+VANSLRRVFI E
Sbjct: 72 SNQPTVRITELTDENVKFIVENTDLAVANSLRRVFIGE---------------------- 109
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
+ YSRDCTC + C ECSVEFTLDV+C +DQTRH+T+ DL S
Sbjct: 110 ------------------LQYSRDCTCEELCPECSVEFTLDVRCNEDQTRHITSRDLISN 151
Query: 124 DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
RV+PVTSRNRD D N+Y + DDILIVKLRKGQELRLRAYA+KGFGKEHAKWNPTAG
Sbjct: 152 SPRVIPVTSRNRDNDPNDYVDQDDILIVKLRKGQELRLRAYAEKGFGKEHAKWNPTAG 209
>gi|302803341|ref|XP_002983424.1| hypothetical protein SELMODRAFT_180179 [Selaginella moellendorffii]
gi|300149109|gb|EFJ15766.1| hypothetical protein SELMODRAFT_180179 [Selaginella moellendorffii]
Length = 320
Score = 204 bits (520), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 102/181 (56%), Positives = 135/181 (74%), Gaps = 4/181 (2%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y P+V I DL D+ +KF++ DT+ S+AN+LRRV IAE PT+AID V++EANS+VL+DE
Sbjct: 5 YQRFPTVRIRDLKDDFLKFELRDTDASIANALRRVIIAEVPTLAIDLVEIEANSSVLNDE 64
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEFTLDVKCVDDQTRHVTTAD 119
FIA R+GLIPLTSD+ ++ + YSRDC D C CS+EFTL VKC ++T VT+ D
Sbjct: 65 FIAHRLGLIPLTSDKAME-MRYSRDCDECDGDGRCDYCSIEFTLSVKCTSEETLDVTSHD 123
Query: 120 LKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
L+S+D++VVPV S D D+ + + ILIVKLRKGQEL+LRA A+KG K+HAKW+P
Sbjct: 124 LQSSDSQVVPVDSIGHDPDIENFNQKKGILIVKLRKGQELKLRAIARKGIAKDHAKWSPA 183
Query: 180 A 180
A
Sbjct: 184 A 184
>gi|302754380|ref|XP_002960614.1| hypothetical protein SELMODRAFT_75337 [Selaginella moellendorffii]
gi|300171553|gb|EFJ38153.1| hypothetical protein SELMODRAFT_75337 [Selaginella moellendorffii]
Length = 320
Score = 204 bits (520), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 102/181 (56%), Positives = 135/181 (74%), Gaps = 4/181 (2%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y P+V I DL D+ +KF++ DT+ S+AN+LRRV IAE PT+AID V++EANS+VL+DE
Sbjct: 5 YQRFPTVRIRDLKDDFLKFELRDTDASIANALRRVIIAEVPTLAIDLVEIEANSSVLNDE 64
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEFTLDVKCVDDQTRHVTTAD 119
FIA R+GLIPLTSD+ ++ + YSRDC D C CS+EFTL VKC ++T VT+ D
Sbjct: 65 FIAHRLGLIPLTSDKAME-MRYSRDCDECDGDGRCDYCSIEFTLSVKCTSEETLDVTSHD 123
Query: 120 LKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
L+S+D++VVPV S D D+ + + ILIVKLRKGQEL+LRA A+KG K+HAKW+P
Sbjct: 124 LQSSDSQVVPVDSIGHDPDIENFNQKKGILIVKLRKGQELKLRAIARKGIAKDHAKWSPA 183
Query: 180 A 180
A
Sbjct: 184 A 184
>gi|221040824|dbj|BAH12113.1| unnamed protein product [Homo sapiens]
Length = 155
Score = 198 bits (504), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 92/132 (69%), Positives = 115/132 (87%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPL SD++VD++ YSRDCT +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTFEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTS 132
S RV+PV++
Sbjct: 121 ISNSPRVIPVSA 132
>gi|168026615|ref|XP_001765827.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683004|gb|EDQ69418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 324
Score = 196 bits (497), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 99/183 (54%), Positives = 131/183 (71%), Gaps = 6/183 (3%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y P+V I D+ D+ +KF++ DT+ S+AN+LRR+ IAE PT+AID V++E+NS+VL+DE
Sbjct: 6 YQRFPTVRIRDIKDDVLKFELRDTDASIANALRRIMIAEVPTLAIDLVEIESNSSVLNDE 65
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEFTLDVKCVDDQTRHVTTAD 119
F+A R+GLIP+ SD ++ L SRDC D C CS+EF L VKC DQT VT+ D
Sbjct: 66 FLAHRLGLIPIVSDRAMEMRL-SRDCDACDGDGRCEYCSIEFHLSVKCTGDQTLDVTSLD 124
Query: 120 LKSTDARVVPVTSRNRDADMN--EYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
L S+D ++PV + R ADM E +T ILIVKLRKGQEL+LRA A+KG GK+HAKW+
Sbjct: 125 LVSSDPSIIPVDAAGRAADMGGFESNDTRGILIVKLRKGQELKLRAIARKGIGKDHAKWS 184
Query: 178 PTA 180
P A
Sbjct: 185 PAA 187
>gi|449692874|ref|XP_004213207.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like,
partial [Hydra magnipapillata]
Length = 131
Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 91/131 (69%), Positives = 111/131 (84%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYA+QP V I + TD+N+KF +E+T+LSVANSLRR+FIAE PT+AIDWVQ+E N++VL
Sbjct: 1 MPYASQPRVKILEWTDDNLKFILENTDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA RIGLIPLTSDE VD++ YSRDCTC +FC ECSV+FTLDVKC + TRHVT+ DL
Sbjct: 61 DEFIAHRIGLIPLTSDEKVDKMCYSRDCTCSEFCDECSVKFTLDVKCTGETTRHVTSRDL 120
Query: 121 KSTDARVVPVT 131
S D +V+PVT
Sbjct: 121 ISEDPKVIPVT 131
>gi|384498629|gb|EIE89120.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Rhizopus delemar RA 99-880]
Length = 201
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 95/175 (54%), Positives = 126/175 (72%), Gaps = 10/175 (5%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
PS+ I +LT + + F + DT+LSVAN+LRRV IAE PT+AID V++E N+TVL+DEFIA
Sbjct: 12 PSITIRELTKDRINFILSDTDLSVANALRRVMIAEVPTVAIDMVEIETNTTVLADEFIAH 71
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+G++P+ S E V+++ Y+RDCTC +CSECSVE TL VKC DD+T+ VTT DL ST+
Sbjct: 72 RLGMVPIDSRE-VEKLRYTRDCTCSQYCSECSVELTLHVKCTDDRTKDVTTRDLMSTNPS 130
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
PV D+ +L+VKLRKG EL+L+ AKKG KEHAKW+P +G
Sbjct: 131 FTPVLQDKDDS---------GVLLVKLRKGHELKLKCIAKKGVAKEHAKWSPVSG 176
>gi|313232341|emb|CBY09450.1| unnamed protein product [Oikopleura dioica]
Length = 164
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 96/166 (57%), Positives = 127/166 (76%), Gaps = 3/166 (1%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP V I ++ DEN KF +E+T+LSVAN+LRRV++AE P +AIDW+++E N+TVL
Sbjct: 1 MPYANQPIVRIEEIKDENCKFSIENTDLSVANALRRVWLAEVPVLAIDWIRIEENTTVLI 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A R+ LIPL +EVVD++ Y RDC+C +FC++C+VEFTLDV C D TR VTTADL
Sbjct: 61 DEFLAHRLALIPLHCEEVVDKMQYIRDCSCDNFCNDCTVEFTLDVTCDTDATRTVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAK 166
S + V P ++ D D N +++ ILIVKLRKGQ L+L A+AK
Sbjct: 121 ISGNPSVQPALGKSDD-DYNR--DSNQILIVKLRKGQTLKLTAHAK 163
>gi|294464103|gb|ADE77570.1| unknown [Picea sitchensis]
Length = 330
Score = 191 bits (486), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 98/183 (53%), Positives = 133/183 (72%), Gaps = 6/183 (3%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y P+V I ++ D+ +KF++++T+ S+AN+LRRV I E PT+AID V++E+NS+VL+DE
Sbjct: 11 YQRFPTVKIREMKDDYMKFELKNTDPSIANALRRVMIGEVPTIAIDLVEIESNSSVLNDE 70
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEFTLDVKCVDDQTRHVTTAD 119
F+A R+GLIPL S+ +D + +SRDC D C CSVEF L+VKC DQT VT+ D
Sbjct: 71 FLAHRLGLIPLISERAMD-MRFSRDCDTCDGDAQCHYCSVEFKLNVKCDGDQTLDVTSLD 129
Query: 120 LKSTDARVVPVTSRNRDADMNEY--GETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
L S+D R PV + +R ADMN + E I+IVKLR+GQELRLRA A+KG GK+HAKW+
Sbjct: 130 LVSSDMRENPVVAVDRAADMNVFDASEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 189
Query: 178 PTA 180
P A
Sbjct: 190 PAA 192
>gi|357475219|ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
gi|85719360|gb|ABC75365.1| RNA polymerase, dimerisation [Medicago truncatula]
gi|355508950|gb|AES90092.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
Length = 318
Score = 189 bits (480), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 99/181 (54%), Positives = 127/181 (70%), Gaps = 6/181 (3%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
YA P V I +L D+ +KF++ DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 6 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 65
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEFTLDVKCVDDQTRHVTTAD 119
FIA R+GLIPLTS+ + + +SRDC D C CSVEF L VKC+ DQT V++ D
Sbjct: 66 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDVSSKD 124
Query: 120 LKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
L S+D V PV DA + G I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 125 LISSDHTVTPVDVPGGDASIESDGRG--IIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 182
Query: 180 A 180
A
Sbjct: 183 A 183
>gi|66801649|ref|XP_629750.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|74851108|sp|Q54DH7.1|RPB3_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II subunit C
gi|60463138|gb|EAL61332.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 302
Score = 189 bits (480), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 131/175 (74%), Gaps = 6/175 (3%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
QP + I ++ ++++ F + +T++SVAN+LRRV IAE PTM ID V+ E+N++VL DEFIA
Sbjct: 11 QPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFIA 70
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+GLIPL SD +D+ Y+RDC+C D C +CSVE L+VKC +++ R VT++DL S ++
Sbjct: 71 HRLGLIPLVSDN-IDKFCYTRDCSCSDRCDQCSVELRLNVKCTENRPRDVTSSDLLSQNS 129
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V+PV+S+ ++ + +I IVKLR+GQE++LRA AKKG GKEHAKW+P+
Sbjct: 130 AVIPVSSQVTSSNSEQ-----EIPIVKLRRGQEIKLRAIAKKGVGKEHAKWSPSC 179
>gi|330805244|ref|XP_003290595.1| RNA polymerase II core subunit [Dictyostelium purpureum]
gi|325079268|gb|EGC32876.1| RNA polymerase II core subunit [Dictyostelium purpureum]
Length = 303
Score = 188 bits (478), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 94/177 (53%), Positives = 130/177 (73%), Gaps = 11/177 (6%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
QP + I ++ +E++ F + +T++SVAN+LRRV IAE PTM+ID V+ EAN++VL DEFIA
Sbjct: 11 QPELDILEIKNESIVFTLSNTDISVANALRRVMIAEVPTMSIDLVEFEANNSVLCDEFIA 70
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL---KS 122
R+GLIPL SD VD+ Y+RDC+C + C +CSVEF L+VKC + + VT++DL +
Sbjct: 71 HRLGLIPLVSDN-VDKFNYTRDCSCSERCDQCSVEFKLNVKCSNQRPIDVTSSDLIVVSN 129
Query: 123 TDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
+ V+PV+S+ + TD+I IVKLR+GQELRLRA AKKG GKEHAKW+P+
Sbjct: 130 NNNSVIPVSSQTTE-------RTDEIPIVKLRQGQELRLRAIAKKGVGKEHAKWSPS 179
>gi|71535027|gb|AAZ32911.1| DNA-directed RNA polymerase II third largest subunit [Medicago
sativa]
Length = 184
Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 99/181 (54%), Positives = 127/181 (70%), Gaps = 6/181 (3%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
YA P V I +L D+ +KF++ DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 1 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 60
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEFTLDVKCVDDQTRHVTTAD 119
FIA R+GLIPLTS+ + + +SRDC D C CSVEF L VKC+ DQT V++ D
Sbjct: 61 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDVSSKD 119
Query: 120 LKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
L S+D V PV DA + G I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LISSDHTVTPVDVPGGDASVESDGRG--IIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 177
Query: 180 A 180
A
Sbjct: 178 A 178
>gi|449442251|ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Cucumis sativus]
Length = 320
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/181 (54%), Positives = 125/181 (69%), Gaps = 4/181 (2%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y P V I +L D+ KF++ DT+ S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 6 YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEFTLDVKCVDDQTRHVTTAD 119
FIA R+GLIPLTS+ + + +SRDC D C CSVEF L KC DQT VT+ D
Sbjct: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
Query: 120 LKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
L S+D VVPV + A E +T I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 125 LYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 184
Query: 180 A 180
A
Sbjct: 185 A 185
>gi|388505946|gb|AFK41039.1| unknown [Medicago truncatula]
Length = 318
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 98/181 (54%), Positives = 126/181 (69%), Gaps = 6/181 (3%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
YA P V I +L D+ +KF++ DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 6 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 65
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEFTLDVKCVDDQTRHVTTAD 119
FIA R+GLIPLTS+ + + +SRDC D C CSVEF L VK + DQT V++ D
Sbjct: 66 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEYCSVEFHLRVKRITDQTLDVSSKD 124
Query: 120 LKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
L S+D V PV DA + G I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 125 LISSDHTVTPVDVPGGDASIESDGRG--IIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 182
Query: 180 A 180
A
Sbjct: 183 A 183
>gi|356521566|ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Glycine max]
Length = 319
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/186 (53%), Positives = 127/186 (68%), Gaps = 16/186 (8%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
YA P V I +L D+ KF++ DT+ S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 7 YARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVLNDE 66
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEFTLDVKCVDDQTRHVTTAD 119
FIA R+GLIPLTS+ + + +SRDC D C CSVEF L VKC+ DQT VT+ D
Sbjct: 67 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTSKD 125
Query: 120 LKSTDARVVPVTSRNRDADMNEYGETDD-----ILIVKLRKGQELRLRAYAKKGFGKEHA 174
L S+D V PV D ++ TD I+IVKLR+GQEL+LRA A+KG GK+HA
Sbjct: 126 LYSSDPTVSPV-------DFSDPSATDSDNNRGIIIVKLRRGQELKLRAIARKGIGKDHA 178
Query: 175 KWNPTA 180
KW+P A
Sbjct: 179 KWSPAA 184
>gi|255555327|ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
Length = 318
Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/181 (53%), Positives = 125/181 (69%), Gaps = 6/181 (3%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y P + I +L D+ KF++ DT+ S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 6 YQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDE 65
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEFTLDVKCVDDQTRHVTTAD 119
FIA R+GLIPLTS+ + + +SRDC D C CSVEF L KC+ DQT VT+ D
Sbjct: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDVTSKD 124
Query: 120 LKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
L S+D VVPV D+ + E I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 125 LYSSDHTVVPVDF--SDSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 182
Query: 180 A 180
A
Sbjct: 183 A 183
>gi|356576253|ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Glycine max]
Length = 320
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/187 (52%), Positives = 127/187 (67%), Gaps = 17/187 (9%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
YA P V I +L D+ KF++ DT+ S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 7 YARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVLNDE 66
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEFTLDVKCVDDQTRHVTTAD 119
FIA R+GLIPLTS+ + + +SRDC D C CSVEF L VKC+ DQT VT+ D
Sbjct: 67 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTSKD 125
Query: 120 LKSTDARVVPVTSRNRDADMNEYGETDD------ILIVKLRKGQELRLRAYAKKGFGKEH 173
L S+D V PV D ++ TD I+IVKLR+GQEL+LRA A+KG GK+H
Sbjct: 126 LYSSDPTVSPV-------DFSDPSATDSPDNNRGIIIVKLRRGQELKLRAIARKGIGKDH 178
Query: 174 AKWNPTA 180
AKW+P A
Sbjct: 179 AKWSPAA 185
>gi|328868426|gb|EGG16804.1| RNA polymerase II core subunit [Dictyostelium fasciculatum]
Length = 296
Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 130/174 (74%), Gaps = 8/174 (4%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P++ I +L ++++ F + +T++SVAN+LRR+ IAE PTMAID V+ + N++VL DEFIA
Sbjct: 9 PNLEILELKNDSITFVLSNTDISVANALRRIMIAEVPTMAIDLVEFQTNTSVLCDEFIAH 68
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPLTS + V+ Y+R+C+C + C+ECSVEF L+VKC+ D+ VT++DL+S +
Sbjct: 69 RLGLIPLTSHK-VESFNYTRECSCTERCTECSVEFNLNVKCL-DRALEVTSSDLQSQNDN 126
Query: 127 VVPVTSRNRDADMNEYGETDD-ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
V PV++ + N YG T I IV+LRKGQE++L+A AKKG GKEHAKW PT
Sbjct: 127 VFPVSASD-----NVYGNTSGAIPIVRLRKGQEVKLKAIAKKGVGKEHAKWIPT 175
>gi|15226523|ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis
thaliana]
gi|11134646|sp|Q39211.1|RPB3A_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB3-A;
Short=RNA polymerase II subunit 3-A; Short=RNA
polymerase II subunit B3-A; AltName: Full=DNA-directed
RNA polymerase II 36 kDa polypeptide A
gi|514318|gb|AAB03741.1| RNA polymerase II third largest subunit [Arabidopsis thaliana]
gi|4544370|gb|AAD22281.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
gi|17381018|gb|AAL36321.1| putative DNA-directed RNA polymerase II third largest subunit
[Arabidopsis thaliana]
gi|20465883|gb|AAM20046.1| putative DNA-directed RNA polymerase II [Arabidopsis thaliana]
gi|330251306|gb|AEC06400.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis
thaliana]
Length = 319
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/181 (51%), Positives = 126/181 (69%), Gaps = 5/181 (2%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y P + I +L D+ KF++ +T++S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 6 YQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 65
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEFTLDVKCVDDQTRHVTTAD 119
FIA R+GLIPLTS+ + + +SRDC D C CSVEF L KCV DQT VT+ D
Sbjct: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVTSRD 124
Query: 120 LKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
L S D V PV D+ +++ E I+IVKLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 125 LYSADPTVTPV-DFTIDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPA 183
Query: 180 A 180
A
Sbjct: 184 A 184
>gi|297832026|ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
gi|297329735|gb|EFH60154.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
Length = 319
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/181 (51%), Positives = 125/181 (69%), Gaps = 5/181 (2%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y P + I +L D+ KF++ +T++S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 6 YQRFPKITIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 65
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEFTLDVKCVDDQTRHVTTAD 119
FIA R+GLIPLTS+ + + +SRDC D C CSVEF L KCV DQT VT+ D
Sbjct: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFRLSAKCVTDQTLDVTSRD 124
Query: 120 LKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
L S D V PV D+ ++ E I+IVKLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 125 LYSADPTVTPV-DFTIDSSASDSSEQKGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPA 183
Query: 180 A 180
A
Sbjct: 184 A 184
>gi|224105591|ref|XP_002313865.1| predicted protein [Populus trichocarpa]
gi|222850273|gb|EEE87820.1| predicted protein [Populus trichocarpa]
Length = 346
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/184 (53%), Positives = 130/184 (70%), Gaps = 7/184 (3%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y P + I ++ D+ +KF++ +T+ S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 6 YQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEFTLDVKCVDDQTRHVTTAD 119
FIA R+GLIPLTS+ + + +SRDC D C CSVEF L KC+ DQT VT+ D
Sbjct: 66 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDVTSKD 124
Query: 120 LKSTDARVVPVT-SRNRDA-DMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
L S+D V+PV S DA D ++ ET I+IVKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 125 LYSSDHAVIPVDFSDPSDANDPFDHTETQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 184
Query: 177 NPTA 180
+P A
Sbjct: 185 SPAA 188
>gi|147838054|emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
Length = 318
Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/183 (51%), Positives = 126/183 (68%), Gaps = 10/183 (5%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y P + I ++ D+ KF++ +T+ S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 6 YQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDE 65
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEFTLDVKCVDDQTRHVTTAD 119
FIA R+GLIPLTS+ + + +SRDC D C CSVEF L KC+ D+T VT+ D
Sbjct: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDVTSKD 124
Query: 120 LKSTDARVVPVTSRNRDADMNEYGETD--DILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
L S+D VVPV +D + Y D I+IVKLR+GQELRLRA A+KG GK+HAKW+
Sbjct: 125 LISSDHTVVPVDF----SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180
Query: 178 PTA 180
P A
Sbjct: 181 PAA 183
>gi|225428887|ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
vinifera]
Length = 318
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/183 (51%), Positives = 126/183 (68%), Gaps = 10/183 (5%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y P + I ++ D+ KF++ +T+ S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 6 YQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDE 65
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEFTLDVKCVDDQTRHVTTAD 119
FIA R+GLIPLTS+ + + +SRDC D C CSVEF L KC+ D+T VT+ D
Sbjct: 66 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDVTSKD 124
Query: 120 LKSTDARVVPVTSRNRDADMNEYGETD--DILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
L S+D VVPV +D + Y D I+IVKLR+GQELRLRA A+KG GK+HAKW+
Sbjct: 125 LISSDHTVVPVDF----SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180
Query: 178 PTA 180
P A
Sbjct: 181 PAA 183
>gi|21593370|gb|AAM65319.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
Length = 319
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/181 (51%), Positives = 125/181 (69%), Gaps = 5/181 (2%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y P + I +L D+ KF++ +T++S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 6 YQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 65
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEFTLDVKCVDDQTRHVTTAD 119
FIA R+GLI LTS+ + + +SRDC D C CSVEF L KCV DQT VT+ D
Sbjct: 66 FIAHRLGLISLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVTSRD 124
Query: 120 LKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
L S D V PV D+ +++ E I+IVKLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 125 LYSADPTVTPV-DFTIDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPA 183
Query: 180 A 180
A
Sbjct: 184 A 184
>gi|242048618|ref|XP_002462055.1| hypothetical protein SORBIDRAFT_02g014460 [Sorghum bicolor]
gi|241925432|gb|EER98576.1| hypothetical protein SORBIDRAFT_02g014460 [Sorghum bicolor]
Length = 328
Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/191 (51%), Positives = 125/191 (65%), Gaps = 14/191 (7%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y P V I DL D+ KF++ DT+ S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 9 YQRFPRVRIRDLKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDE 68
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEFTLDVKCVD-DQTRHVTTA 118
FIA R+GLIPLTS + ++ +SRDC D C CSVEF L + D DQT VT+
Sbjct: 69 FIAHRLGLIPLTSAAAM-QMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVTSN 127
Query: 119 DLKSTDARVVPV-TSRNRDADM--------NEYGETDDILIVKLRKGQELRLRAYAKKGF 169
DL+S D +V PV +R + N E ILIVKLR+GQELRLRA A+KG
Sbjct: 128 DLRSMDPKVCPVDQARAYQQALGGTDPFGANTSNENRGILIVKLRRGQELRLRAIARKGI 187
Query: 170 GKEHAKWNPTA 180
GK+HAKW+P A
Sbjct: 188 GKDHAKWSPAA 198
>gi|226529628|ref|NP_001149261.1| LOC100282883 [Zea mays]
gi|195625852|gb|ACG34756.1| DNA-directed RNA polymerase II 36 kDa polypeptide A [Zea mays]
gi|223974247|gb|ACN31311.1| unknown [Zea mays]
gi|414588991|tpg|DAA39562.1| TPA: DNA-directed RNA polymerase II polypeptide A [Zea mays]
Length = 328
Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 100/193 (51%), Positives = 125/193 (64%), Gaps = 18/193 (9%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y P V I +L D+ KF++ DT+ S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 9 YQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDE 68
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEFTLDVKCVD-DQTRHVTTA 118
FIA R+GLIPLTS + ++ +SRDC D C CSVEF L V D DQT VT+
Sbjct: 69 FIAHRLGLIPLTSAAAM-QMRFSRDCDACDGDGSCEYCSVEFHLSVHATDSDQTLEVTSN 127
Query: 119 DLKSTDARVVPVTSRNRDADMNEYGETD-----------DILIVKLRKGQELRLRAYAKK 167
DL+S D +V PV A + G TD ILIVKLR+GQELRLRA A+K
Sbjct: 128 DLRSMDPKVCPVDQAR--AYQHALGGTDPFGANASNENRGILIVKLRRGQELRLRAIARK 185
Query: 168 GFGKEHAKWNPTA 180
G GK+HAKW+P A
Sbjct: 186 GIGKDHAKWSPAA 198
>gi|414588990|tpg|DAA39561.1| TPA: hypothetical protein ZEAMMB73_135001 [Zea mays]
Length = 260
Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 99/191 (51%), Positives = 125/191 (65%), Gaps = 14/191 (7%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y P V I +L D+ KF++ DT+ S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 9 YQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDE 68
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEFTLDVKCVD-DQTRHVTTA 118
FIA R+GLIPLTS + ++ +SRDC D C CSVEF L V D DQT VT+
Sbjct: 69 FIAHRLGLIPLTSAAAM-QMRFSRDCDACDGDGSCEYCSVEFHLSVHATDSDQTLEVTSN 127
Query: 119 DLKSTDARVVPV-TSRNRDADM--------NEYGETDDILIVKLRKGQELRLRAYAKKGF 169
DL+S D +V PV +R + N E ILIVKLR+GQELRLRA A+KG
Sbjct: 128 DLRSMDPKVCPVDQARAYQHALGGTDPFGANASNENRGILIVKLRRGQELRLRAIARKGI 187
Query: 170 GKEHAKWNPTA 180
GK+HAKW+P A
Sbjct: 188 GKDHAKWSPAA 198
>gi|328768461|gb|EGF78507.1| hypothetical protein BATDEDRAFT_20338 [Batrachochytrium
dendrobatidis JAM81]
Length = 285
Score = 175 bits (443), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 124/179 (69%), Gaps = 14/179 (7%)
Query: 7 PSVHITDLTD----ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
P V +T + D ++V F + +T+LSVAN+LRR IAE PT+AID V+ E+NS+VL+DE
Sbjct: 11 PIVQVTSIIDTQNTKSVSFILGNTDLSVANALRRTMIAEVPTVAIDLVEFESNSSVLTDE 70
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS 122
F+A R+GLIPL S++ V I Y+RDC+C +C +CSVE L+V+C ++ TR VT+ DL S
Sbjct: 71 FLAHRLGLIPLNSEQ-VGTITYTRDCSCTQYCPQCSVELHLNVRCDEEFTREVTSRDLIS 129
Query: 123 TDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
+ + ++P+ + D+ I+I KLRKGQE+ LR AKKG KEHAKW+P AG
Sbjct: 130 SHSSIMPIIHGDDDS---------GIMIAKLRKGQEINLRCIAKKGTAKEHAKWSPCAG 179
>gi|115477954|ref|NP_001062572.1| Os09g0110400 [Oryza sativa Japonica Group]
gi|46806365|dbj|BAD17541.1| putative DNA-directed RNA polymerase II [Oryza sativa Japonica
Group]
gi|113630805|dbj|BAF24486.1| Os09g0110400 [Oryza sativa Japonica Group]
gi|215692481|dbj|BAG87901.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215697124|dbj|BAG91118.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768432|dbj|BAH00661.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201657|gb|EEC84084.1| hypothetical protein OsI_30378 [Oryza sativa Indica Group]
gi|222641056|gb|EEE69188.1| hypothetical protein OsJ_28369 [Oryza sativa Japonica Group]
Length = 330
Score = 175 bits (443), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 99/193 (51%), Positives = 125/193 (64%), Gaps = 18/193 (9%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y P V I +L D+ KF++ DT+ S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 10 YQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDE 69
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEFTLDVKCVD-DQTRHVTTA 118
FIA R+GLIPLTS + + +SRDC D C CSVEF L + D DQT VT+
Sbjct: 70 FIAHRLGLIPLTSAAAM-AMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVTSN 128
Query: 119 DLKSTDARVVPVTSRNRDADMNEYGETD-----------DILIVKLRKGQELRLRAYAKK 167
DL+STD +V PV A + G T+ ILIVKLR+GQELRLRA A+K
Sbjct: 129 DLRSTDPKVCPVDQAR--AYQHALGGTEPFDTAAAADQRGILIVKLRRGQELRLRAIARK 186
Query: 168 GFGKEHAKWNPTA 180
G GK+HAKW+P A
Sbjct: 187 GIGKDHAKWSPAA 199
>gi|297832024|ref|XP_002883894.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
gi|297329734|gb|EFH60153.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
Length = 319
Score = 174 bits (442), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 91/181 (50%), Positives = 123/181 (67%), Gaps = 5/181 (2%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y P ++I +L D+ KF++ +T++S+AN+LRRV I+E PT+AID V +E NS+VL+DE
Sbjct: 6 YQRFPKINIRELKDDYAKFELRETDVSMANALRRVMISEVPTIAIDLVNIEVNSSVLNDE 65
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEFTLDVKCVDDQTRHVTTAD 119
FIA R+GLIPLTS+ + + + +DC D C CSVEF L KCV DQT VT+ D
Sbjct: 66 FIAQRLGLIPLTSERAM-SMRFCQDCDACDGEGQCEFCSVEFPLSAKCVTDQTLDVTSRD 124
Query: 120 LKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
L S D V PV D+ ++ E I IVKLR+GQEL+L+A A+KG GK+HAKW+P
Sbjct: 125 LYSADPTVTPV-DFTIDSSASDSSEQKGITIVKLRRGQELKLKAIARKGIGKDHAKWSPA 183
Query: 180 A 180
A
Sbjct: 184 A 184
>gi|281211628|gb|EFA85790.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 295
Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 124/174 (71%), Gaps = 11/174 (6%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
P++ I ++ ++++ F + +T++SVAN+LRRV IAE PTM ID V+ EAN++VL DEFIA
Sbjct: 8 HPNLEILEIKNDSITFILSNTDISVANALRRVMIAEVPTMCIDLVEFEANNSVLVDEFIA 67
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+GLIPLTS + VD+ Y+RDC+C + C CSVEF L+ +C +D + VT+ DL S +
Sbjct: 68 HRLGLIPLTSHK-VDQFNYTRDCSCAERCDNCSVEFKLNARC-NDHSYSVTSLDLLSQND 125
Query: 126 RVVPVTSRNRDADMNEYGETDDIL-IVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
V+PV S + G D ++ IVKL +GQE++LRA AKKG GKEHAKW+P
Sbjct: 126 HVIPVGSSD--------GRPDTVIPIVKLHRGQEVKLRAIAKKGVGKEHAKWSP 171
>gi|320166369|gb|EFW43268.1| polymerase II polypeptide C [Capsaspora owczarzaki ATCC 30864]
Length = 270
Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/181 (50%), Positives = 117/181 (64%), Gaps = 10/181 (5%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MP+A+QP V I +LT +NV+F + TELSVANSLRRV IAE PTMAID VQ + NS+VL
Sbjct: 1 MPFASQPVVQILELTPDNVRFVLSKTELSVANSLRRVCIAEVPTMAIDLVQFDENSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A R+GL+PL S E Y +C C C+ C+V TL+ + V DL
Sbjct: 61 DEFVAHRLGLLPLAS-ETAGEFDYLAECDCDGGCNRCTVSLTLEA----EGPCSVVARDL 115
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+S+D VVP++ R+ E D+++VKL GQ ++L A AKKG GKEHAKWNPT
Sbjct: 116 RSSDESVVPISQRDASG-----SEQHDVVLVKLGAGQRIKLTAIAKKGIGKEHAKWNPTC 170
Query: 181 G 181
G
Sbjct: 171 G 171
>gi|357154558|ref|XP_003576823.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Brachypodium distachyon]
Length = 330
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 94/191 (49%), Positives = 123/191 (64%), Gaps = 14/191 (7%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y P V I +L D+ KF++ DT+ S+AN+LRRV IAE PT+AID V++E+NS+VL+DE
Sbjct: 10 YQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDE 69
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEFTLDVKCVD-DQTRHVTTA 118
FIA R+GLIPLTS + + +SRDC D C CSVEF L + D ++T VT+
Sbjct: 70 FIAHRLGLIPLTSSGAMG-MRFSRDCDACDGDGSCEHCSVEFHLAARATDANKTLEVTSN 128
Query: 119 DLKSTDARVVPV---------TSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGF 169
DL+STD +V PV D + + ILIVKLR+GQELRLRA A+KG
Sbjct: 129 DLRSTDPKVCPVDQAMAYQQAIGTADPYDTSTASDHRGILIVKLRRGQELRLRAIARKGI 188
Query: 170 GKEHAKWNPTA 180
K+HAKW+P A
Sbjct: 189 AKDHAKWSPAA 199
>gi|340976001|gb|EGS23116.1| RNA polymerase II subunit 3-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 344
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/177 (49%), Positives = 117/177 (66%), Gaps = 11/177 (6%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P+V I+ VKF++ + +LS ANSLRRV +AE PT+AID V++E N++VL+DEFIA
Sbjct: 17 PAVKISQADSTRVKFELSNADLSFANSLRRVMLAEIPTIAIDLVEIEVNTSVLADEFIAH 76
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL + E VD++LYSRDC C +C +CSV +L KC D+ HV + DL
Sbjct: 77 RLGLIPLNA-EGVDQLLYSRDCDCDGYCEQCSVRLSLHAKCTGDENMHVFSRDL------ 129
Query: 127 VVPVTSR-NRDADMNEYGETDDI--LIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
VPV R N++ + D + LI+KLR GQE++L AKKG KEHAKW P+A
Sbjct: 130 -VPVGERVNQNLGTPIINDPDGLGPLILKLRPGQEIKLECIAKKGIAKEHAKWAPSA 185
>gi|290972439|ref|XP_002668960.1| predicted protein [Naegleria gruberi]
gi|284082499|gb|EFC36216.1| predicted protein [Naegleria gruberi]
Length = 324
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 116/176 (65%), Gaps = 4/176 (2%)
Query: 5 NQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFI 64
N+ + I LTDE KF++ + + S+AN+LRR+ IAE PT+AID V+ E NS+VL DEFI
Sbjct: 9 NKAQLSILALTDEYCKFKLSNVDTSIANALRRIMIAEVPTLAIDLVEFEMNSSVLHDEFI 68
Query: 65 ASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTD 124
A R+GLIPLT ++ Y+ DC+C C +CSVE TL VKC + R VT+ DL S +
Sbjct: 69 AHRLGLIPLTCLN-INSFSYTSDCSCTGHCEKCSVELTLHVKCTESH-RDVTSNDLISNN 126
Query: 125 ARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
P T D NE E + I IVKL++GQE++L+A AKKG GK HAKW+P A
Sbjct: 127 PSCAPCTLSATSRD-NE-NEHNGITIVKLKRGQEIKLKAIAKKGVGKGHAKWSPVA 180
>gi|514320|gb|AAB03740.1| RNA polymerase II third largest subunit [Arabidopsis thaliana]
Length = 319
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/180 (48%), Positives = 119/180 (66%), Gaps = 3/180 (1%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y P+V I +L D+ KF++ +T++S+AN+LRRV I+E PTMAI V++E NS+VL+DE
Sbjct: 6 YQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVLNDE 65
Query: 63 FIASRIGLIPLTSDEVVDRILYS--RDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
FIA R+ LIPLTS+ + DC + C CSVEF L KCV DQT VT+ DL
Sbjct: 66 FIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDVTSRDL 125
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S D V PV ++ ++ E I+I KLR+GQEL+L+A A+KG GK+HAKW+P A
Sbjct: 126 YSADPTVTPV-DFTSNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAKWSPAA 184
>gi|15226509|ref|NP_179142.1| DNA-directed RNA polymerase II subunit RPB3-B [Arabidopsis
thaliana]
gi|12643753|sp|Q39212.2|RPB3B_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB3-B;
Short=RNA polymerase II subunit 3-B; Short=RNA
polymerase II subunit B3-B; AltName: Full=DNA-directed
RNA polymerase II 36 kDa polypeptide B
gi|4544373|gb|AAD22284.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
gi|28973621|gb|AAO64135.1| putative DNA-directed RNA polymerase II, third largest subunit
[Arabidopsis thaliana]
gi|29824193|gb|AAP04057.1| putative DNA-directed RNA polymerase II, third largest subunit
[Arabidopsis thaliana]
gi|110736768|dbj|BAF00345.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
gi|330251303|gb|AEC06397.1| DNA-directed RNA polymerase II subunit RPB3-B [Arabidopsis
thaliana]
Length = 319
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/180 (48%), Positives = 119/180 (66%), Gaps = 3/180 (1%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y P+V I +L D+ KF++ +T++S+AN+LRRV I+E PTMAI V++E NS+VL+DE
Sbjct: 6 YQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVLNDE 65
Query: 63 FIASRIGLIPLTSDEVVDRILYS--RDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
FIA R+ LIPLTS+ + DC + C CSVEF L KCV DQT VT+ DL
Sbjct: 66 FIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDVTSRDL 125
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S D V PV ++ ++ E I+I KLR+GQEL+L+A A+KG GK+HAKW+P A
Sbjct: 126 YSADPTVTPV-DFTSNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAKWSPAA 184
>gi|145328718|ref|NP_001077894.1| DNA-directed RNA polymerase II subunit RPB3-B [Arabidopsis
thaliana]
gi|330251304|gb|AEC06398.1| DNA-directed RNA polymerase II subunit RPB3-B [Arabidopsis
thaliana]
Length = 235
Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 88/180 (48%), Positives = 119/180 (66%), Gaps = 3/180 (1%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y P+V I +L D+ KF++ +T++S+AN+LRRV I+E PTMAI V++E NS+VL+DE
Sbjct: 6 YQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVLNDE 65
Query: 63 FIASRIGLIPLTSDEVVDRILYS--RDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
FIA R+ LIPLTS+ + DC + C CSVEF L KCV DQT VT+ DL
Sbjct: 66 FIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDVTSRDL 125
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S D V PV ++ ++ E I+I KLR+GQEL+L+A A+KG GK+HAKW+P A
Sbjct: 126 YSADPTVTPV-DFTSNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAKWSPAA 184
>gi|298705011|emb|CBJ28486.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 262
Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 90/190 (47%), Positives = 119/190 (62%), Gaps = 11/190 (5%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MP P V I DL ++ V+F + +T+ SVAN+LRRV IAE PTMAID V + NS+VL
Sbjct: 1 MPNLRAPQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQ 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDV----------KCVDD 110
DEF++ R+GLIPL +D V + Y+ DC C D+C +CS FTLDV + + D
Sbjct: 61 DEFLSHRLGLIPLAADPGV-QYEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQD 119
Query: 111 QTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFG 170
Q HVT+ADL S+D R+ V D ++ + I+I KL KGQ ++L A AKKG
Sbjct: 120 QPVHVTSADLVSSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIA 179
Query: 171 KEHAKWNPTA 180
KEHAKW+P A
Sbjct: 180 KEHAKWSPVA 189
>gi|326433417|gb|EGD78987.1| DNA-directed RNA polymerase II subunit RPB3 [Salpingoeca sp. ATCC
50818]
Length = 271
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/179 (49%), Positives = 110/179 (61%), Gaps = 7/179 (3%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I LTD +K Q+ + + ++ANS RR IAE PT+AID V +E N+TVL DEFIA
Sbjct: 8 PQVRIMSLTDSEIKLQLSNADTALANSFRRSMIAEVPTLAIDDVHIEINTTVLHDEFIAH 67
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST--- 123
R+GLIPLTS+ Y RDCTC C C V+ L V C D VTT L+ST
Sbjct: 68 RLGLIPLTSERAA-HFNYMRDCTCDAGCPNCVVKLELHVACRDAHQMEVTTEHLRSTLDG 126
Query: 124 -DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
D VVPV + D + G + I+I K+R+GQEL+L YA+KG GKEHAKW PTA
Sbjct: 127 PDTSVVPVATAAERRDQSIQG--NHIVICKIRQGQELKLTCYARKGVGKEHAKWIPTAA 183
>gi|85082680|ref|XP_956964.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Neurospora
crassa OR74A]
gi|7801032|emb|CAB91428.1| probable DNA-directed RNA polymerase II chain RPB3 [Neurospora
crassa]
gi|28918046|gb|EAA27728.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Neurospora
crassa OR74A]
gi|336468167|gb|EGO56330.1| hypothetical protein NEUTE1DRAFT_83471 [Neurospora tetrasperma FGSC
2508]
gi|350289588|gb|EGZ70813.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Neurospora
tetrasperma FGSC 2509]
Length = 337
Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 111/174 (63%), Gaps = 5/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I+ + VKF++ +TELS ANSLRRV +AE PT+AID V++EANS+VL+DEFIA
Sbjct: 16 PVVKISQADNTRVKFELSNTELSFANSLRRVMLAEIPTIAIDLVEIEANSSVLADEFIAH 75
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL + E ++++LYSRDC C ++C CSV L KC D V DL R
Sbjct: 76 RLGLIPLNA-EGIEQLLYSRDCDCDEYCEHCSVTLNLHAKCTGDDIMQVCARDLVPVGDR 134
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V V D E LI+KLR GQE++L+ AKKG KEH+KW P+A
Sbjct: 135 VNQVLGSPIINDP----EGQGPLILKLRHGQEIKLQCIAKKGIAKEHSKWAPSA 184
>gi|325182041|emb|CCA16494.1| DNAdirected RNA polymerase II 36 kDa polypeptide A putative [Albugo
laibachii Nc14]
Length = 319
Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/186 (46%), Positives = 118/186 (63%), Gaps = 11/186 (5%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MP P V I DL D+ +KF++ +T+ SVAN+LRRV IAE PT+AID V +E N++V++
Sbjct: 1 MPNPQFPKVEILDLRDDFIKFELFETDASVANALRRVMIAEVPTLAIDLVTIEVNTSVMT 60
Query: 61 DEFIASRIGLIPLTSDEVVD----RILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVT 116
DEF+A R+G+IPL D ++ R +YS+DC C + C CSVEF LDV+ + VT
Sbjct: 61 DEFLAHRLGMIPLLFDGGLEAFRQRFVYSQDCDCEEHCPNCSVEFQLDVR-AEQGMLSVT 119
Query: 117 TADLKSTDARVVPVTSRNRDADMNEYGETDD--ILIVKLRKGQELRLRAYAKKGFGKEHA 174
+ LKS D + PV + + E+ T D ++I KL GQ +RL A AK G GKEHA
Sbjct: 120 SDSLKSVDPYIRPVNFSSEE----EFNNTQDTGVIIAKLGPGQHIRLSAIAKLGIGKEHA 175
Query: 175 KWNPTA 180
KW P A
Sbjct: 176 KWAPVA 181
>gi|336261545|ref|XP_003345560.1| hypothetical protein SMAC_06213 [Sordaria macrospora k-hell]
gi|380094769|emb|CCC07270.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 311
Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 109/174 (62%), Gaps = 5/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I+ VKF++ +TEL ANSLRRV +AE PT+AID V++EANS+VL+DEFIA
Sbjct: 16 PVVKISQADSTRVKFELSNTELCFANSLRRVMLAEIPTIAIDLVEIEANSSVLADEFIAH 75
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL + E +D++LYSRDC C ++C CSV L KC D V DL R
Sbjct: 76 RLGLIPLNA-EGIDQLLYSRDCDCDEYCEHCSVTLNLHAKCTGDDIMQVCARDLVPVGDR 134
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V V D G LI+KLR GQE++L+ AKKG KEH+KW P+A
Sbjct: 135 VNQVLGSPIINDPEGQGP----LILKLRHGQEIKLQCIAKKGIAKEHSKWAPSA 184
>gi|367035840|ref|XP_003667202.1| hypothetical protein MYCTH_2312782 [Myceliophthora thermophila ATCC
42464]
gi|347014475|gb|AEO61957.1| hypothetical protein MYCTH_2312782 [Myceliophthora thermophila ATCC
42464]
Length = 337
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 109/174 (62%), Gaps = 5/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I+ VKF++++ +LS ANSLRRV +AE PT+AID V++E NS+VL+DEFI+
Sbjct: 16 PVVKISQADSVRVKFELQNADLSFANSLRRVMLAEIPTIAIDLVEIEENSSVLADEFISH 75
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL + E VD +LY+RDC C C CSV TL KC ++ HV DL T R
Sbjct: 76 RLGLIPLNA-EGVDNLLYARDCDCDGCCEHCSVRLTLHAKCTGEENMHVFARDLVPTGDR 134
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ V D G LI+KLR GQE++L AKKG KEHAKW P+A
Sbjct: 135 INQVLGTPIVNDAEGLGP----LILKLRPGQEIKLECIAKKGIAKEHAKWAPSA 184
>gi|167517689|ref|XP_001743185.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778284|gb|EDQ91899.1| predicted protein [Monosiga brevicollis MX1]
Length = 276
Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/184 (47%), Positives = 115/184 (62%), Gaps = 12/184 (6%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ + P + +T+ + + F ++ +L++ANS RRV IAE PTMAID V + N++VL DE
Sbjct: 7 FNSSPRIEVTEHNHDEITFVLKSCDLALANSFRRVMIAEVPTMAIDAVHIAKNTSVLHDE 66
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCT-CVDFCSECSVEFTLDVKCVDDQTRHVTTADLK 121
F+A R+GLIPLTS E D+ Y RDCT C C C V TLDV+ ++ HVTT DL
Sbjct: 67 FLAHRLGLIPLTS-EAADKFYYPRDCTLCEMGCDHCQVMLTLDVEGHTEEPTHVTTDDLI 125
Query: 122 STDA----RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
S A V P+++R N I+I KL KGQ ++L A+AKKGFGKEHAKW
Sbjct: 126 SQAAGDFMAVKPISAREESNIRN------PIVICKLAKGQRIQLTAFAKKGFGKEHAKWC 179
Query: 178 PTAG 181
PTAG
Sbjct: 180 PTAG 183
>gi|301093788|ref|XP_002997739.1| DNA-directed RNA polymerase II 36 kDa polypeptide A [Phytophthora
infestans T30-4]
gi|262109988|gb|EEY68040.1| DNA-directed RNA polymerase II 36 kDa polypeptide A [Phytophthora
infestans T30-4]
Length = 241
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 120/186 (64%), Gaps = 11/186 (5%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MP+ P + + +L D+ ++F++ +T+ SVAN++RRV I+E PT+AID V +E N++V++
Sbjct: 1 MPHPRFPKIDVQELRDDFIRFELSETDASVANAIRRVMISEVPTLAIDLVSIEINTSVMT 60
Query: 61 DEFIASRIGLIPLTSDEVVD----RILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVT 116
DEF+A R+G+IPL D ++ R +YS+DC C + C CSVEFTLDV D VT
Sbjct: 61 DEFLAHRLGMIPLNFDGGLENFRQRFVYSQDCDCDENCPNCSVEFTLDVT-ADSGVLSVT 119
Query: 117 TADLKSTDARVVPVTSRNRDADMNEYGETDD--ILIVKLRKGQELRLRAYAKKGFGKEHA 174
+ LKS+D + PV + + E T D ++I KL GQ LRL A AK G GKEHA
Sbjct: 120 SEALKSSDPYIRPVNFSSEE----ELNNTQDSGVIIAKLGPGQRLRLSAIAKLGIGKEHA 175
Query: 175 KWNPTA 180
KW+P A
Sbjct: 176 KWSPVA 181
>gi|348687896|gb|EGZ27710.1| hypothetical protein PHYSODRAFT_554134 [Phytophthora sojae]
Length = 242
Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 120/186 (64%), Gaps = 11/186 (5%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MP+ P + I +L D+ ++F++ +T+ SVAN++RRV I+E PT+AID V +E N++V++
Sbjct: 1 MPHPRFPKIEIQELRDDFIRFELSETDASVANAIRRVMISEVPTLAIDLVSIEINTSVMT 60
Query: 61 DEFIASRIGLIPLTSDEVVD----RILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVT 116
DEF+A R+G+IPL D ++ R +YS DC C + C CSVEF+LDV D+ VT
Sbjct: 61 DEFLAHRLGMIPLNFDGGLENFRQRFVYSADCDCDENCPNCSVEFSLDVT-ADNGVLSVT 119
Query: 117 TADLKSTDARVVPVTSRNRDADMNEYGETDD--ILIVKLRKGQELRLRAYAKKGFGKEHA 174
+ LKS+D + PV + + E T D ++I KL GQ LRL A AK G GKEHA
Sbjct: 120 SEALKSSDPYIRPVNFSSEE----ELNNTQDSGVIIAKLGPGQRLRLSAIAKLGIGKEHA 175
Query: 175 KWNPTA 180
KW+P A
Sbjct: 176 KWSPVA 181
>gi|242214615|ref|XP_002473129.1| predicted protein [Postia placenta Mad-698-R]
gi|220727790|gb|EED81699.1| predicted protein [Postia placenta Mad-698-R]
Length = 265
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 115/177 (64%), Gaps = 3/177 (1%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
+P V I +L ++V F VE+ +L++ANSLRRV +A+ PT+AID V++E N+TVL DEFIA
Sbjct: 3 EPIVRIRELQKDHVNFVVENVDLALANSLRRVMMADIPTVAIDMVEIETNTTVLPDEFIA 62
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+G+IPL S + + Y+RDCTC+ +C C+VE TL V C D VT+ L +D
Sbjct: 63 HRLGMIPLVSSNCDEGMRYTRDCTCLSWCQFCAVELTLHVACHDGVAMDVTSMHLDVSDE 122
Query: 126 RVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
+ N + ++ + +LI K+RKGQELRLR AKKG KEHAKW+P +
Sbjct: 123 --LAKRPENFGHPVGKFDPSVSPVLIAKIRKGQELRLRCIAKKGVAKEHAKWSPCSA 177
>gi|50307587|ref|XP_453773.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642907|emb|CAH00869.1| KLLA0D16170p [Kluyveromyces lactis]
Length = 307
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 115/175 (65%), Gaps = 5/175 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + T +NV F + + +L++ANSLRRV I+E PT+AID V++E N+TVL+DEFIA
Sbjct: 6 PQVKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAH 65
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + +D+++Y RDC C D C CSVE L + T +V DL+ T
Sbjct: 66 RLGLIPLQSAD-IDQVVYCRDCYCEDHCDRCSVELILHAIGESESTTNVYAKDLQITSD- 123
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
+ RN + + E + +LI KLRKGQE+R++ AKKG KEHAKW+P+A
Sbjct: 124 ---LKGRNIGHPIIQDREANGVLICKLRKGQEIRVKCIAKKGISKEHAKWSPSAA 175
>gi|172213|gb|AAA34889.1| RNA polymerase II (EC 2.7.7.6) [Saccharomyces cerevisiae]
Length = 318
Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 114/175 (65%), Gaps = 5/175 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + + +NV F + + +L++ANSLRRV IAE PT+AID V++E N+TVL+DEFIA
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + ++++ YSRDC C D C +CSV TL + T +V + DL
Sbjct: 66 RLGLIPLQSMD-IEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDL----VI 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
V + RN + + E + +LI KLRKGQEL+L AKKG KEHAKW P AG
Sbjct: 121 VSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAG 175
>gi|363752075|ref|XP_003646254.1| hypothetical protein Ecym_4382 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889889|gb|AET39437.1| hypothetical protein Ecym_4382 [Eremothecium cymbalariae
DBVPG#7215]
Length = 311
Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 114/175 (65%), Gaps = 5/175 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + T +NV F + + +LS+ANSLRR+ IAE PT+AID V++E N++VL+DEFI+
Sbjct: 6 PQVKIREATKDNVDFILSNVDLSLANSLRRIMIAEIPTLAIDSVEIETNTSVLADEFISH 65
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + +D+++Y RDC C D C CSV TL + T +V DL+
Sbjct: 66 RLGLIPLQSKD-IDQLVYCRDCYCEDHCDRCSVVLTLQAVGESESTTNVYAKDLQI---- 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
V + +N + + E + IL+ KLRKGQELRL+ AKKG KEHAKW+P A
Sbjct: 121 VSDLGGKNIGHPIIQDKEANGILVCKLRKGQELRLKCVAKKGISKEHAKWSPAAA 175
>gi|429857950|gb|ELA32787.1| RNA polymerase ii subunit 3 [Colletotrichum gloeosporioides Nara
gc5]
Length = 340
Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/177 (48%), Positives = 109/177 (61%), Gaps = 5/177 (2%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
+ P + I+ + +V F + + +LS ANSLRRV AE PT+AID V++EAN++VL+DEF
Sbjct: 12 SGGPQIKISGADNIHVNFDLSNCDLSFANSLRRVIQAEVPTIAIDLVEIEANTSVLADEF 71
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
IA R+GLIPL S + V+ +LYSRDC C +C CSV+ TL +C D+T V +DL
Sbjct: 72 IAHRLGLIPLHSKD-VNSLLYSRDCDCEQYCDNCSVKLTLHARCSSDETMKVYASDLIVD 130
Query: 124 DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
R D G LI KLRKGQEL+L AKKG KEHAKW PTA
Sbjct: 131 SFRQNGTVGNPVIMDPEGQGS----LIAKLRKGQELKLSCIAKKGIAKEHAKWMPTA 183
>gi|45187753|ref|NP_983976.1| ADL120Cp [Ashbya gossypii ATCC 10895]
gi|44982514|gb|AAS51800.1| ADL120Cp [Ashbya gossypii ATCC 10895]
gi|374107190|gb|AEY96098.1| FADL120Cp [Ashbya gossypii FDAG1]
Length = 311
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/175 (46%), Positives = 115/175 (65%), Gaps = 5/175 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + T +NV F + + +LS+ANSLRR+ IAE PT+AID V++E+N++VL+DEFI+
Sbjct: 6 PQVKIREATKDNVDFILSNVDLSLANSLRRIMIAEIPTLAIDSVEIESNTSVLADEFISH 65
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GL+PL S + +D+++Y RDC C D C CSV TL + T +V DL+
Sbjct: 66 RLGLVPLQSKD-IDQLVYCRDCFCEDHCDRCSVLLTLHAVGESESTTNVYAKDLQI---- 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
V + +N + + E + +LI KLRKGQELRL+ AKKG KEHAKW+P A
Sbjct: 121 VSDLGGKNIGHPIIQDKEANGVLICKLRKGQELRLKCVAKKGIAKEHAKWSPAAA 175
>gi|365992198|ref|XP_003672927.1| hypothetical protein NDAI_0L02000 [Naumovozyma dairenensis CBS 421]
gi|410730081|ref|XP_003671218.2| hypothetical protein NDAI_0G02000 [Naumovozyma dairenensis CBS 421]
gi|401780038|emb|CCD25975.2| hypothetical protein NDAI_0G02000 [Naumovozyma dairenensis CBS 421]
Length = 311
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 111/175 (63%), Gaps = 5/175 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + T +NV F + + +L++ANS RRV IAE PT+AID VQ+E N+TVL+DEFIA
Sbjct: 6 PQVKIREATKDNVDFILSNIDLALANSFRRVMIAEIPTLAIDSVQIETNTTVLADEFIAH 65
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + ++++ YSRDC C D C +CSV TL + T +V DL
Sbjct: 66 RLGLIPLQSTD-IEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYAKDL----VI 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
V + RN + + E + +LI KLRKGQEL+L AKKG KEHAKW P A
Sbjct: 121 VSNLLGRNIGHPIIQDKENNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAA 175
>gi|116205067|ref|XP_001228344.1| hypothetical protein CHGG_10417 [Chaetomium globosum CBS 148.51]
gi|88176545|gb|EAQ84013.1| hypothetical protein CHGG_10417 [Chaetomium globosum CBS 148.51]
Length = 338
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 108/174 (62%), Gaps = 5/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I+ VKF++ + +++ ANSLRRV + E PT+AID V++E NS+VL+DEFIA
Sbjct: 16 PVVKISQADPIRVKFELSNADIAFANSLRRVMLGEIPTIAIDLVEIEENSSVLADEFIAH 75
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL +D V+ +L++RDC C C CSV TL KC D+ HV DL T R
Sbjct: 76 RLGLIPLNADG-VEGLLFARDCDCDGCCEHCSVRLTLHAKCTGDENMHVFARDLVPTGER 134
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ V +D G LI+KLR GQE++L AKKG KEHAKW P+A
Sbjct: 135 INQVLGTPVVSDSEGLG----ALILKLRPGQEIKLECIAKKGIAKEHAKWAPSA 184
>gi|430812471|emb|CCJ30120.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 289
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 111/175 (63%), Gaps = 13/175 (7%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I ++ ++ F + + +L+ ANSLRRV +AE PT+AID V++E N++VL+DEFI
Sbjct: 7 PQVTIRNIEKNSIDFVLSNVDLAFANSLRRVILAEVPTVAIDLVEIEINTSVLADEFITH 66
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+G+IPL S V D+++Y+RDC C +C++CSV+ TL KC D T V + DL
Sbjct: 67 RLGMIPLDSANVDDKLVYTRDCDCDQYCTKCSVQLTLYAKCTSDGTMDVYSKDL------ 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
+ N D + G ILI KLRK QELRL+ AKKG KEHAKW+P +
Sbjct: 121 ---IVEHNSTIDPDGKG----ILICKLRKAQELRLKCIAKKGIAKEHAKWSPVSA 168
>gi|336371374|gb|EGN99713.1| hypothetical protein SERLA73DRAFT_88301 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384130|gb|EGO25278.1| DNA-directed RNA polymerase II, subunit 3 [Serpula lacrymans var.
lacrymans S7.9]
Length = 400
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 116/192 (60%), Gaps = 27/192 (14%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
+P+V I ++ + V F +E+ +L+ ANS+RR +A+ PT+AID V++EAN+TVL DEFIA
Sbjct: 8 EPTVRIREVKKDRVNFVLENVDLAFANSVRRAVMADIPTIAIDIVEIEANTTVLPDEFIA 67
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+G++PL S + I Y+RDCTC+ C CS+E LDV C +++T VT+ L D+
Sbjct: 68 HRLGMVPLVSANCEEGIRYTRDCTCLSGCQYCSIELRLDVACHENRTMEVTSNHLDVVDS 127
Query: 126 RVVPVTSRNRDADMNEYGE--------------TDD-----ILIVKLRKGQELRLRAYAK 166
AD E GE DD +LI K+RKGQEL+LR AK
Sbjct: 128 HTY--------ADEGEAGEELTKRGENFGHPVGKDDVSLPPVLICKMRKGQELKLRCIAK 179
Query: 167 KGFGKEHAKWNP 178
KG KEHAKW+P
Sbjct: 180 KGIAKEHAKWSP 191
>gi|452821367|gb|EME28398.1| DNA-directed RNA polymerase II subunit C [Galdieria sulphuraria]
Length = 257
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/187 (45%), Positives = 116/187 (62%), Gaps = 11/187 (5%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MP+A P++HI T + F + DT+ SVAN++RRV IA+ PTMAID + ++ N++ L
Sbjct: 1 MPFAKTPTIHINRQTFNEMDFIITDTDTSVANAIRRVAIAQVPTMAIDLIHMQVNTSSLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCT-CVDFCSECSVEFTLDVKCVDDQTRHVTTAD 119
DE +A R+GLIPLTS VD Y+RDC C D C CSV F LDV+C ++ VT+ D
Sbjct: 61 DELLAHRLGLIPLTSHR-VDEFEYTRDCPYCSDHCLHCSVTFELDVQCTEEAMT-VTSQD 118
Query: 120 LKSTDAR-------VVPVT-SRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGK 171
L + A V PV S + ++E + I++ KL KGQ ++L A AKKG GK
Sbjct: 119 LVNKSAHESQLAASVQPVHFSGEYNPTLSEENGLNGIVLAKLAKGQRIQLTAIAKKGVGK 178
Query: 172 EHAKWNP 178
EHAKW+P
Sbjct: 179 EHAKWSP 185
>gi|403217190|emb|CCK71685.1| hypothetical protein KNAG_0H02700 [Kazachstania naganishii CBS
8797]
Length = 326
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 111/174 (63%), Gaps = 5/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + +NV F + + EL++ANSLRRV +AE PT+AID VQ+E N+TVL+DEFIA
Sbjct: 6 PQVKIREANRDNVDFILSNVELAMANSLRRVMVAEIPTLAIDSVQVETNTTVLADEFIAH 65
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + ++R+ Y RDC C D C +CSV TL + T +V DL
Sbjct: 66 RLGLIPLQSMD-IERLEYCRDCFCEDHCDKCSVVLTLQAVGESESTTNVYAKDL----TI 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V + RN + + E + +LI KLRKGQEL++ AKKG KEHAKW PT+
Sbjct: 121 VSNLMGRNIGHPIIQDKENNGVLICKLRKGQELKMTCIAKKGIAKEHAKWGPTS 174
>gi|254582264|ref|XP_002497117.1| ZYRO0D15796p [Zygosaccharomyces rouxii]
gi|238940009|emb|CAR28184.1| ZYRO0D15796p [Zygosaccharomyces rouxii]
Length = 308
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 111/174 (63%), Gaps = 5/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + T ENV F + EL++ANSLRRV IAE PT+AID V++E N++VL+DEFIA
Sbjct: 6 PQVKIREATRENVDFILSHVELAMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEFIAH 65
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + ++++ Y RDC C D C +CSV TL + T +V DL
Sbjct: 66 RLGLIPLQSTD-IEQLEYCRDCFCEDHCDKCSVVLTLQAIGESESTTNVYAKDL----VI 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V + RN + + E + +LI KLRKGQEL L+ AKKG KEHAKW P+A
Sbjct: 121 VSNLMGRNLGHPIIQDKEGNGVLICKLRKGQELTLKCVAKKGIAKEHAKWGPSA 174
>gi|398364469|ref|NP_012243.3| Rpb3p [Saccharomyces cerevisiae S288c]
gi|730603|sp|P16370.2|RPB3_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=B44.5; AltName:
Full=DNA-directed RNA polymerase II 45 kDa polypeptide
gi|14278326|pdb|1I3Q|C Chain C, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278337|pdb|1I50|C Chain C, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278367|pdb|1I6H|C Chain C, Rna Polymerase Ii Elongation Complex
gi|20150715|pdb|1K83|C Chain C, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749618|pdb|1NIK|C Chain C, Wild Type Rna Polymerase Ii
gi|30749739|pdb|1NT9|C Chain C, Complete 12-Subunit Rna Polymerase Ii
gi|34810555|pdb|1PQV|C Chain C, Rna Polymerase Ii-Tfiis Complex
gi|46015417|pdb|1R5U|C Chain C, Rna Polymerase Ii Tfiib Complex
gi|46015782|pdb|1SFO|C Chain C, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965913|pdb|1R9S|C Chain C, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965925|pdb|1R9T|C Chain C, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966109|pdb|1TWA|C Chain C, Rna Polymerase Ii Complexed With Atp
gi|56966123|pdb|1TWC|C Chain C, Rna Polymerase Ii Complexed With Gtp
gi|56966133|pdb|1TWF|C Chain C, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966143|pdb|1TWG|C Chain C, Rna Polymerase Ii Complexed With Ctp
gi|56966153|pdb|1TWH|C Chain C, Rna Polymerase Ii Complexed With 2'datp
gi|58177166|pdb|1WCM|C Chain C, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679446|pdb|1Y1W|C Chain C, Complete Rna Polymerase Ii Elongation Complex
gi|61679463|pdb|1Y77|C Chain C, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679504|pdb|1Y1V|C Chain C, Refined Rna Polymerase Ii-tfiis Complex
gi|61679517|pdb|1Y1Y|C Chain C, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754245|pdb|2B63|C Chain C, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590856|pdb|2B8K|C Chain C, 12-Subunit Rna Polymerase Ii
gi|122920063|pdb|2E2H|C Chain C, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920078|pdb|2E2I|C Chain C, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920093|pdb|2E2J|C Chain C, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921032|pdb|2NVQ|C Chain C, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921068|pdb|2NVT|C Chain C, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921084|pdb|2NVX|C Chain C, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921099|pdb|2NVY|C Chain C, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921111|pdb|2NVZ|C Chain C, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104676|pdb|2JA5|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104691|pdb|2JA6|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104712|pdb|2JA7|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104724|pdb|2JA7|O Chain O, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104736|pdb|2JA8|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387186|pdb|2YU9|C Chain C, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877775|pdb|2R7Z|C Chain C, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172229|pdb|2R92|C Chain C, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172242|pdb|2R93|C Chain C, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613464|pdb|2VUM|C Chain C, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368736|pdb|3CQZ|C Chain C, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983592|pdb|3FKI|C Chain C, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781918|pdb|3GTG|C Chain C, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781931|pdb|3GTJ|C Chain C, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781944|pdb|3GTK|C Chain C, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781957|pdb|3GTL|C Chain C, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781970|pdb|3GTM|C Chain C, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781984|pdb|3GTO|C Chain C, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781997|pdb|3GTP|C Chain C, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782010|pdb|3GTQ|C Chain C, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104513|pdb|3H3V|D Chain D, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839443|pdb|3HOU|C Chain C, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839458|pdb|3HOU|O Chain O, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839473|pdb|3HOV|C Chain C, Complete Rna Polymerase Ii Elongation Complex Ii
gi|266618767|pdb|3K1F|C Chain C, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914554|pdb|3K7A|C Chain C, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982477|pdb|3M3Y|C Chain C, Rna Polymerase Ii Elongation Complex C
gi|295982490|pdb|3M4O|C Chain C, Rna Polymerase Ii Elongation Complex B
gi|325053965|pdb|3PO2|C Chain C, Arrested Rna Polymerase Ii Elongation Complex
gi|325053980|pdb|3PO3|C Chain C, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634540|pdb|3QT1|C Chain C, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197458|pdb|3RZD|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197470|pdb|3RZO|C Chain C, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197482|pdb|3S14|C Chain C, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197494|pdb|3S15|C Chain C, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197506|pdb|3S16|C Chain C, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197518|pdb|3S17|C Chain C, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197530|pdb|3S1M|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197542|pdb|3S1N|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197554|pdb|3S1Q|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197566|pdb|3S1R|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197578|pdb|3S2D|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781199|pdb|3S2H|C Chain C, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|357380838|pdb|4A3C|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546292|pdb|4A3B|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546310|pdb|4A3D|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546327|pdb|4A3E|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546344|pdb|4A3F|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546361|pdb|4A3J|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546378|pdb|4A3K|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546394|pdb|4A3L|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546411|pdb|4A3M|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977881|pdb|4A3G|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977896|pdb|4A3I|C Chain C, Rna Polymerase Ii Binary Complex With Dna
gi|380764981|pdb|4A93|C Chain C, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145448|pdb|4BBR|C Chain C, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145461|pdb|4BBS|C Chain C, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|599978|emb|CAA86971.1| RNA polymerase II [Saccharomyces cerevisiae]
gi|151943136|gb|EDN61471.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
gi|190406243|gb|EDV09510.1| RNA polymerase II 45 kDa subunit [Saccharomyces cerevisiae RM11-1a]
gi|207344276|gb|EDZ71474.1| YIL021Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272154|gb|EEU07153.1| Rpb3p [Saccharomyces cerevisiae JAY291]
gi|259147237|emb|CAY80490.1| Rpb3p [Saccharomyces cerevisiae EC1118]
gi|285812625|tpg|DAA08524.1| TPA: Rpb3p [Saccharomyces cerevisiae S288c]
gi|323333059|gb|EGA74460.1| Rpb3p [Saccharomyces cerevisiae AWRI796]
gi|323354620|gb|EGA86456.1| Rpb3p [Saccharomyces cerevisiae VL3]
gi|349578928|dbj|GAA24092.1| K7_Rpb3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765154|gb|EHN06668.1| Rpb3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298697|gb|EIW09793.1| Rpb3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 318
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 5/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + + +NV F + + +L++ANSLRRV IAE PT+AID V++E N+TVL+DEFIA
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + ++++ YSRDC C D C +CSV TL + T +V + DL
Sbjct: 66 RLGLIPLQSMD-IEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDL----VI 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V + RN + + E + +LI KLRKGQEL+L AKKG KEHAKW P A
Sbjct: 121 VSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAA 174
>gi|257471948|pdb|3I4M|C Chain C, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471963|pdb|3I4N|C Chain C, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
Length = 324
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 5/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + + +NV F + + +L++ANSLRRV IAE PT+AID V++E N+TVL+DEFIA
Sbjct: 12 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 71
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + ++++ YSRDC C D C +CSV TL + T +V + DL
Sbjct: 72 RLGLIPLQSMD-IEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDL----VI 126
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V + RN + + E + +LI KLRKGQEL+L AKKG KEHAKW P A
Sbjct: 127 VSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAA 180
>gi|168029877|ref|XP_001767451.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681347|gb|EDQ67775.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 385
Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 87/186 (46%), Positives = 121/186 (65%), Gaps = 13/186 (6%)
Query: 3 YANQPSVHITD-LTDENV-KFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
Y P+V I + ++ NV +F++E+T++S+ANSLRR + E PT+A D V++E NS+VL+
Sbjct: 20 YHRLPTVSIMESMSSRNVLRFKLENTDVSMANSLRRCMMVEVPTLAFDLVEIEMNSSVLT 79
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSR--DCTCVDFCSECSVEFTLDVKCVDDQTRHVTTA 118
DEFIA R+GLIPLTSD ++ + S C C C+VEF L VK +D+ + VT
Sbjct: 80 DEFIAHRLGLIPLTSDRAMEMVFPSECDSCPGDRSCQNCTVEFLLSVKATEDRIKDVTQR 139
Query: 119 DLKSTDARVVPVTSRNRDADMNEYGETD----DILIVKLRKGQELRLRAYAKKGFGKEHA 174
DLKS++ VVPV + D+++ G + DI I KL KGQE+ LRA AKKG G HA
Sbjct: 140 DLKSSNDAVVPV-----EIDVDKQGVLEECKMDICIAKLYKGQEITLRALAKKGMGSLHA 194
Query: 175 KWNPTA 180
KW+P A
Sbjct: 195 KWSPVA 200
>gi|353251635|pdb|3J0K|C Chain C, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 268
Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 113/175 (64%), Gaps = 5/175 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + + +NV F + + +L++ANSLRRV IAE PT+AID V++E N+TVL+DEFIA
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + ++++ YSRDC C D C +CSV TL + T +V + DL
Sbjct: 66 RLGLIPLQSMD-IEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDL----VI 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
V + RN + + E + +LI KLRKGQEL+L AKKG KEHAKW P A
Sbjct: 121 VSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAA 175
>gi|254839488|pdb|3HOW|C Chain C, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839503|pdb|3HOX|C Chain C, Complete Rna Polymerase Ii Elongation Complex V
gi|254839518|pdb|3HOY|C Chain C, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839533|pdb|3HOZ|C Chain C, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
Length = 347
Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 5/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + + +NV F + + +L++ANSLRRV IAE PT+AID V++E N+TVL+DEFIA
Sbjct: 35 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 94
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + ++++ YSRDC C D C +CSV TL + T +V + DL
Sbjct: 95 RLGLIPLQSMD-IEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDL----VI 149
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V + RN + + E + +LI KLRKGQEL+L AKKG KEHAKW P A
Sbjct: 150 VSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAA 203
>gi|367055384|ref|XP_003658070.1| hypothetical protein THITE_2124530 [Thielavia terrestris NRRL 8126]
gi|347005336|gb|AEO71734.1| hypothetical protein THITE_2124530 [Thielavia terrestris NRRL 8126]
Length = 337
Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 108/174 (62%), Gaps = 5/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I+ VK+++ + +L+ ANSLRRV +AE PT+AID V++E NS+VL+DEFIA
Sbjct: 15 PMVKISQADSVRVKYELSNVDLAFANSLRRVMLAEIPTIAIDLVEIEENSSVLADEFIAH 74
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S+ V D +L SR+C C C CSV TL KC ++ HV DL T R
Sbjct: 75 RLGLIPLNSEGVKD-MLTSRECDCDGRCENCSVTLTLHAKCTGEENMHVFARDLVPTGER 133
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ V +D G LI+KLR GQE++L AKKG KEHAKW P+A
Sbjct: 134 INQVIGTPVLSDAEGLGP----LILKLRPGQEIKLECIAKKGIAKEHAKWAPSA 183
>gi|401625294|gb|EJS43310.1| rpb3p [Saccharomyces arboricola H-6]
Length = 318
Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 112/174 (64%), Gaps = 5/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + + +NV F + + +L++ANSLRRV IAE PT+AID V++E N+TVL+DEFIA
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + ++++ YSRDC C D C +CSV TL + T +V DL
Sbjct: 66 RLGLIPLQSMD-IEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYGKDL----VI 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V + RN + + E + +LI KLRKGQEL+L AKKG KEHAKW P A
Sbjct: 121 VSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAA 174
>gi|410074507|ref|XP_003954836.1| hypothetical protein KAFR_0A02650 [Kazachstania africana CBS 2517]
gi|372461418|emb|CCF55701.1| hypothetical protein KAFR_0A02650 [Kazachstania africana CBS 2517]
Length = 312
Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 112/175 (64%), Gaps = 5/175 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + T +NV F + + +L++ANSLRRV IAE PT+AID V++E N+TVL+DEFIA
Sbjct: 6 PQVKIREATKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + ++++ YSRDC C D C +CSV TL + T +V DL
Sbjct: 66 RLGLIPLQSTD-IEQLEYSRDCFCEDHCDKCSVVLTLQAVGESESTTNVYAKDL----TI 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
V + RN + + E + +LI KLRKGQEL+L AKKG KEHAKW P A
Sbjct: 121 VSNLLGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCIAKKGISKEHAKWCPAAA 175
>gi|323348153|gb|EGA82407.1| Rpb3p [Saccharomyces cerevisiae Lalvin QA23]
Length = 240
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 113/175 (64%), Gaps = 5/175 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + + +NV F + + +L++ANSLRRV IAE PT+AID V++E N+TVL+DEFIA
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + ++++ YSRDC C D C +CSV TL + T +V + DL
Sbjct: 66 RLGLIPLQSMD-IEQLEYSRDCFCEDHCDKCSVVLTLQAFXESESTTNVYSKDL----VI 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
V + RN + + E + +LI KLRKGQEL+L AKKG KEHAKW P A
Sbjct: 121 VSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAA 175
>gi|366993697|ref|XP_003676613.1| hypothetical protein NCAS_0E01830 [Naumovozyma castellii CBS 4309]
gi|342302480|emb|CCC70253.1| hypothetical protein NCAS_0E01830 [Naumovozyma castellii CBS 4309]
Length = 318
Score = 155 bits (391), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 111/174 (63%), Gaps = 5/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + T +NV F + + +L++ANS RRV IAE PT+AID VQ+E N+TVL+DEFIA
Sbjct: 6 PQVKIREATKDNVDFILSNVDLALANSFRRVMIAEIPTLAIDSVQIETNTTVLADEFIAH 65
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + ++++ YSRDC C D C +CSV TL + T +V DL
Sbjct: 66 RLGLIPLQSLD-IEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYAKDL----VI 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V + RN + + E + +LI KLRKGQEL++ AKKG KEHAKW P A
Sbjct: 121 VSNLLGRNIGHPIIQDREGNGVLICKLRKGQELKITCIAKKGIAKEHAKWGPAA 174
>gi|323337216|gb|EGA78470.1| Rpb3p [Saccharomyces cerevisiae Vin13]
Length = 240
Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 113/175 (64%), Gaps = 5/175 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + + +NV F + + +L++ANSLRRV IAE PT+AID V++E N+TVL+DEFIA
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + ++++ YSRDC C D C +CSV TL + T +V + DL
Sbjct: 66 RLGLIPLQSMD-IEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDL----VI 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
V + RN + + E + +LI KLRKGQEL+L AKKG KEHAKW P A
Sbjct: 121 VSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAA 175
>gi|171689616|ref|XP_001909748.1| hypothetical protein [Podospora anserina S mat+]
gi|170944770|emb|CAP70881.1| unnamed protein product [Podospora anserina S mat+]
Length = 334
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/177 (47%), Positives = 113/177 (63%), Gaps = 11/177 (6%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I+ VKF++++ ++S ANSLRRV +AE PT+AID V++E+NS+VL+DEFIA
Sbjct: 16 PVVKISQADSVRVKFELQNADISFANSLRRVMLAEIPTIAIDLVEIESNSSVLADEFIAH 75
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL + E V+ +LYSRDC C ++C CSV+ TL KC + V+ DL
Sbjct: 76 RLGLIPLNA-EGVEHLLYSRDCDCEEYCENCSVKLTLHAKCTGYENMSVSARDL------ 128
Query: 127 VVPVTSR-NRDADMNEYGETDDI--LIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
VPV R N+ + D LI+KLR QE++L AKKG KEHAKW P+A
Sbjct: 129 -VPVGERINQSLGTPVINDKDGTGPLILKLRPEQEIKLECIAKKGIAKEHAKWAPSA 184
>gi|50290755|ref|XP_447810.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527121|emb|CAG60759.1| unnamed protein product [Candida glabrata]
Length = 312
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 112/174 (64%), Gaps = 5/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + T +NV F + + +L++ANSLRRV IAE PT+AID V++E N+TVL+DEF+A
Sbjct: 6 PQVKIREATRDNVDFILSNVDLALANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFLAH 65
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + ++++ YSRDC C D C +CSV TL + T +V DL
Sbjct: 66 RLGLIPLQSTD-IEQLEYSRDCFCEDHCDKCSVVLTLQAVGESESTTNVYAKDL----LI 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V + RN + + E + +LI KLRKGQEL+L AKKG KEHAKW P A
Sbjct: 121 VSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCIAKKGIAKEHAKWGPAA 174
>gi|440635232|gb|ELR05151.1| DNA-directed RNA polymerase II subunit C [Geomyces destructans
20631-21]
Length = 342
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 106/174 (60%), Gaps = 5/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I+D + V F++ + +LS ANSLRRV +AE PTMAID V++EAN++VL+DEF+A
Sbjct: 14 PQVKISDADNLRVDFELSNVDLSFANSLRRVILAEVPTMAIDLVEVEANTSVLADEFLAH 73
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S D + YSRDC C +C +CSV L+ KC D+ V DL +
Sbjct: 74 RLGLIPLNSKNAAD-VNYSRDCECEQYCEQCSVTLFLNAKCDSDEIMKVYARDLVVDSLK 132
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D G +I KLRKGQEL+++ AKKG KEHAKW PTA
Sbjct: 133 ANAWVGNPIFTDEGGNGP----VICKLRKGQELKMKCIAKKGIAKEHAKWAPTA 182
>gi|320586301|gb|EFW98980.1| RNA polymerase 2 subunit 3 [Grosmannia clavigera kw1407]
Length = 362
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 109/174 (62%), Gaps = 5/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P+V I+ E VKF++ + +L++ANSLRRV IAE PT+AID V++E N++VL+DEFIA
Sbjct: 16 PAVKISQADVERVKFELTNVDLAIANSLRRVIIAEVPTIAIDIVEVEDNTSVLADEFIAH 75
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GL+PL S D ++YSRDC C +C CS++ L KC D+ V DL AR
Sbjct: 76 RLGLVPLNSKN-ADDVVYSRDCDCEQYCELCSIKLRLQAKCTSDEVMKVYARDLVVDPAR 134
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D + G ++I KLR+GQEL + AKKG KEHAKW+PTA
Sbjct: 135 PNQWVGTPVIRDPDGLG----VMIAKLRRGQELNMTCIAKKGIAKEHAKWSPTA 184
>gi|342882719|gb|EGU83319.1| hypothetical protein FOXB_06170 [Fusarium oxysporum Fo5176]
Length = 340
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 107/175 (61%), Gaps = 6/175 (3%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
QP V I+ +V F++ T L+ AN++RR+ AE PT+AID V++E NS+VL+DEFIA
Sbjct: 17 QPQVKISAADHTHVDFELSKTNLAFANAVRRIIQAEVPTIAIDLVEIETNSSVLADEFIA 76
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+GLIPL S + VD + YSRDC C +C +CSV TL KC D+ V DL D
Sbjct: 77 HRLGLIPLDS-KGVDELNYSRDCDCEQYCEQCSVTLTLHAKCTSDEIMKVYARDL-VVDG 134
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
R + D YG LI KLRKGQEL++ AKKG KEHAKW PT+
Sbjct: 135 RHMNGVGSPVITDPEGYG----CLIAKLRKGQELKISCIAKKGIAKEHAKWMPTS 185
>gi|389741508|gb|EIM82696.1| insert subdomain of RNA polymerase alpha subunit [Stereum hirsutum
FP-91666 SS1]
Length = 411
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/190 (45%), Positives = 116/190 (61%), Gaps = 22/190 (11%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
+P+V I L + V F +E+ EL+ ANSLRRV +A+ PT+AID V++E N+TVL DEFIA
Sbjct: 8 EPTVRIRTLKRDRVNFVLENAELAFANSLRRVMMADLPTIAIDMVEIETNTTVLPDEFIA 67
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+G+IPL S + + Y+RDCTC CS CSV+ L+V C D++T +T+ L
Sbjct: 68 HRLGMIPLVSANCDEAMRYNRDCTCATNCSACSVKLHLNVACHDNRTMDITSNHLD---- 123
Query: 126 RVVP--VTSRNRDADMNEY-----------GETD----DILIVKLRKGQELRLRAYAKKG 168
VVP T D E+ G+ D +LI K+RKGQEL++R AKKG
Sbjct: 124 -VVPHDYTDYAADEQQEEFHKRIDTFGHPVGKNDPNVQPVLICKIRKGQELKVRCIAKKG 182
Query: 169 FGKEHAKWNP 178
KEHAKW+P
Sbjct: 183 IAKEHAKWSP 192
>gi|323308700|gb|EGA61941.1| Rpb3p [Saccharomyces cerevisiae FostersO]
Length = 318
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 112/174 (64%), Gaps = 5/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + + +NV F + + +L++ANSLRRV I E PT+AID V++E N+TVL+DEFIA
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIXEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + ++++ YSRDC C D C +CSV TL + T +V + DL
Sbjct: 66 RLGLIPLQSMD-IEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDL----VI 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V + RN + + E + +LI KLRKGQEL+L AKKG KEHAKW P A
Sbjct: 121 VSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAA 174
>gi|365760141|gb|EHN01882.1| Rpb3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401839643|gb|EJT42771.1| RPB3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 318
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 112/174 (64%), Gaps = 5/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + + + V F + + +L++ANSLRRV IAE PT+AID V++E N+TVL+DEFIA
Sbjct: 6 PQVKIREASKDGVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + ++++ YSRDC C D C +CSV TL + T +V + DL
Sbjct: 66 RLGLIPLQSMD-IEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDL----VI 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V + RN + + E + +LI KLRKGQEL+L AKKG KEHAKW P A
Sbjct: 121 VSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAA 174
>gi|380478665|emb|CCF43467.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Colletotrichum higginsianum]
Length = 339
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 109/177 (61%), Gaps = 5/177 (2%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
+ PS+ I+ + +V F + + +LS ANSLRRV AE P +AID V++EAN++VL+DEF
Sbjct: 12 SGGPSIKISGADNIHVNFDLSNCDLSFANSLRRVIQAEVPVIAIDLVEIEANTSVLADEF 71
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
IA R+GLIPL S + V+ +LY+RDC C +C CSV+ TL +C D+T V +DL
Sbjct: 72 IAHRLGLIPLQSKD-VNSLLYTRDCDCEQYCDNCSVKLTLHARCSSDETMKVYASDLIVD 130
Query: 124 DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
R D G LI KLRKGQEL++ AKKG KEHAKW PT+
Sbjct: 131 SFRQNGTVGNPVILDPEGQGS----LICKLRKGQELKISCIAKKGIAKEHAKWMPTS 183
>gi|406859740|gb|EKD12803.1| RNA polymerase II subunit 3 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 334
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 110/177 (62%), Gaps = 5/177 (2%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
A+ PSV IT+ +V F++E+ +L+ ANSLRRV +AE PTMAID V++EAN++VL+DEF
Sbjct: 12 ASGPSVKITEAGANHVDFELENVDLAFANSLRRVIMAEVPTMAIDTVEIEANTSVLADEF 71
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
+A R+GL+PL S + D + Y+RDC C +C CSV +L +C ++ V DL
Sbjct: 72 LAHRLGLVPLVSKNIED-VNYTRDCECESYCELCSVVLSLQARCTSEEIMKVYARDLVVD 130
Query: 124 DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
R D + G +I KLR+GQELR+R AKKG KEHAKW P +
Sbjct: 131 PNRANQYVGNPVITDEDGLG----TVICKLRQGQELRMRCIAKKGIAKEHAKWAPVS 183
>gi|406606315|emb|CCH42306.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 321
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 116/178 (65%), Gaps = 13/178 (7%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
PS++I + V F + + +LS+ANS+RRV I+E PT+AID V++E N++VL+DEFIA
Sbjct: 4 PSINIRKTASDEVDFVLSNVDLSLANSIRRVMISEIPTLAIDSVEIETNTSVLADEFIAH 63
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + VD++ YSRDCTC D+C++CSVE L V+ D T +V + DL
Sbjct: 64 RLGLIPLQSLD-VDKLSYSRDCTCDDYCNKCSVELELKVRADQDSTLNVYSKDLF----- 117
Query: 127 VVPVTSRNRDADMNEY----GETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ S+N ++ E + +LI KLR QEL +R AKKG KEHAKW+P A
Sbjct: 118 ---IVSQNTHLNIGSAIITDPEENGVLICKLRNEQELFIRCIAKKGIAKEHAKWSPCA 172
>gi|194860382|ref|XP_001969570.1| GG23887 [Drosophila erecta]
gi|190661437|gb|EDV58629.1| GG23887 [Drosophila erecta]
Length = 117
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/88 (82%), Positives = 82/88 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSV IT+LTD+NVKF +EDTELSVANSLRRVFIAETPT+AIDWVQLEANSTVLS
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDC 88
DEF+A RIGLIPL SD+VV+R+ Y+RD
Sbjct: 61 DEFLAHRIGLIPLISDDVVERLQYTRDL 88
>gi|339250374|ref|XP_003374172.1| DNA-directed RNA polymerase II subunit RPB3 [Trichinella spiralis]
gi|316969579|gb|EFV53647.1| DNA-directed RNA polymerase II subunit RPB3 [Trichinella spiralis]
Length = 213
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 108/182 (59%), Gaps = 29/182 (15%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I L DE +KF + +T LS AN LRR+FIAETP + R+
Sbjct: 29 IDIIQLNDEVIKFSLANTRLSFANCLRRIFIAETPCLV-------------------HRL 69
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLTSDE V R+ ++R+C C D CSEC+V+ TL+ +C D+ T V+TADLKS D RV+
Sbjct: 70 GLLPLTSDETVSRMRFARECQCSDHCSECAVQLTLEKQCRDESTHVVSTADLKSQDPRVI 129
Query: 129 PV---------TSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
P+ T R AD N T I+I KL +GQEL + A+KG GKEHAKWNPT
Sbjct: 130 PLHQFKTDQKNTMHFRLADRNGKLST-KIIIAKLCRGQELNVVCLARKGIGKEHAKWNPT 188
Query: 180 AG 181
A
Sbjct: 189 AS 190
>gi|367017650|ref|XP_003683323.1| hypothetical protein TDEL_0H02530 [Torulaspora delbrueckii]
gi|359750987|emb|CCE94112.1| hypothetical protein TDEL_0H02530 [Torulaspora delbrueckii]
Length = 311
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 110/174 (63%), Gaps = 5/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + T +NV F + +L++ANSLRR+ +AE PT+AID V++E N+TVL+DEFIA
Sbjct: 6 PQVKIREATKDNVDFILSQVDLAMANSLRRIMMAEIPTLAIDSVEIETNTTVLADEFIAH 65
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + ++++ Y RDC C D C +CSV TL + T +V DL
Sbjct: 66 RLGLIPLQSTD-IEQLEYCRDCFCEDHCDKCSVVLTLQAIGESESTTNVYAKDL----VI 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V + RN + + E + +LI KLRKGQEL ++ AKKG KEHAKW P A
Sbjct: 121 VSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELSMKCVAKKGISKEHAKWGPAA 174
>gi|310794498|gb|EFQ29959.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Glomerella graminicola M1.001]
Length = 339
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 108/177 (61%), Gaps = 5/177 (2%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
+ PS+ I+ + +V F + + +LS ANSLRRV AE P +AID V++EAN++VL+DEF
Sbjct: 12 SGGPSIKISGADNIHVNFDLSNCDLSFANSLRRVIQAEVPVIAIDLVEIEANTSVLADEF 71
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
IA R+GLIPL S + V+ +LY+RDC C +C CSV+ TL +C D T V +DL
Sbjct: 72 IAHRLGLIPLQSKD-VNSLLYTRDCDCEQYCDNCSVKLTLHARCSSDDTMKVYASDLIVD 130
Query: 124 DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
R D G LI KLRKGQEL++ AKKG KEHAKW PT+
Sbjct: 131 SFRQNGTVGNPVILDPEGQGS----LICKLRKGQELKISCIAKKGIAKEHAKWMPTS 183
>gi|255714803|ref|XP_002553683.1| KLTH0E04598p [Lachancea thermotolerans]
gi|238935065|emb|CAR23246.1| KLTH0E04598p [Lachancea thermotolerans CBS 6340]
Length = 328
Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 112/174 (64%), Gaps = 5/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + T +NV F + + ++++ANSLRRV IAE PT+AID V++E N++VL+DEFI+
Sbjct: 6 PQVKIREATKDNVDFILSNVDITMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEFISH 65
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S ++ D ++Y RDC C D C CSV TL + T +V DL
Sbjct: 66 RLGLIPLQSSDIND-LIYCRDCYCEDHCDRCSVVLTLQAVGESESTTNVYAKDL----VI 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V + RN + + + + +LI KLRKGQEL+L+ AKKG KEHAKW+P A
Sbjct: 121 VSNLMGRNIGHPIIQDKDGNGVLICKLRKGQELKLKCVAKKGISKEHAKWSPAA 174
>gi|149237498|ref|XP_001524626.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146452161|gb|EDK46417.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 336
Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 114/178 (64%), Gaps = 12/178 (6%)
Query: 5 NQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFI 64
N PSV + D + V F ++ +LS+ANSLRR +AE PT+AID V+++ N++VL+DEF+
Sbjct: 5 NGPSVIMRDAEKDRVSFVLQGVDLSMANSLRRTMLAEVPTLAIDLVEIDVNTSVLADEFL 64
Query: 65 ASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTD 124
A R+GLIPL S + ++ +LYSRDC C ++CS+CSV L KC D T +V +DL +
Sbjct: 65 AHRLGLIPLDS-QGIENLLYSRDCACDNYCSKCSVTLELTAKCDSDSTMNVCASDLLKLN 123
Query: 125 ARVV--PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
++ P+ RD + LI KLR+ QE+RL AKKG KEHAKW+P A
Sbjct: 124 TELLGKPII---RDP------QNRGPLICKLRRHQEIRLTCIAKKGIAKEHAKWSPCA 172
>gi|449546952|gb|EMD37921.1| hypothetical protein CERSUDRAFT_50160 [Ceriporiopsis subvermispora
B]
Length = 283
Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 117/201 (58%), Gaps = 25/201 (12%)
Query: 2 PYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSD 61
P +P+V I D + V F +E+ +L+VANS RRV +A+ PT+AID V++E N+TVL D
Sbjct: 4 PQTLEPTVRIRDQKSDRVNFVLENVDLAVANSFRRVMMADLPTIAIDLVEIETNTTVLPD 63
Query: 62 EFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK 121
EFIA R+G++PL S + + Y+RDCTC C CSV +L+V C +D TT D+
Sbjct: 64 EFIAHRLGMVPLASKNCDEAMRYTRDCTCTSNCEYCSVTLSLNVACGED----ATTMDIT 119
Query: 122 STDARVVPVTSRNR--DADMNEYGE--------------TDD-----ILIVKLRKGQELR 160
S V+P + DA E GE DD +L+ K+RKGQEL+
Sbjct: 120 SNHLEVIPGGGQGGYWDAGDAEGGEELSKRPKNFGHPVGKDDPNVPPVLLCKIRKGQELK 179
Query: 161 LRAYAKKGFGKEHAKWNPTAG 181
L+ AKKG KEHAKW+P +
Sbjct: 180 LKCIAKKGTAKEHAKWSPCSA 200
>gi|444324054|ref|XP_004182667.1| hypothetical protein TBLA_0J01520 [Tetrapisispora blattae CBS 6284]
gi|387515715|emb|CCH63148.1| hypothetical protein TBLA_0J01520 [Tetrapisispora blattae CBS 6284]
Length = 335
Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 111/174 (63%), Gaps = 5/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P + I + T +NV F + + ++++ANSLRRV IAE PT+AID V++E N+TVL+DEFI+
Sbjct: 6 PQIKIREATKDNVDFILSNIDMALANSLRRVMIAEIPTLAIDSVEVEMNTTVLADEFISH 65
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + +D++ Y RDC C D C +CSV TL + T +V DL
Sbjct: 66 RLGLIPLQSAD-IDQLEYCRDCFCEDHCDKCSVVLTLQAVGESESTTNVYAKDL----VI 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V + RN + + E + +LI KLRKGQEL++ AKKG KEHAKW TA
Sbjct: 121 VSNLLGRNIGHPIIQDKEGNGVLICKLRKGQELKMTCVAKKGIAKEHAKWGATA 174
>gi|170092317|ref|XP_001877380.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647239|gb|EDR11483.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 304
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 117/193 (60%), Gaps = 22/193 (11%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
+P+V I +L + V F + + +L+ ANSLRRV +A+ PT+AID V++E N+TVL DEFIA
Sbjct: 8 EPTVRIRELKKDRVNFVLGNVDLAFANSLRRVMMADIPTVAIDMVEIEINTTVLPDEFIA 67
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+G++PL S + I +RDCTC+ CS C++ L+V C DD T VT+A L
Sbjct: 68 HRLGMVPLLSSNCDEAIRSTRDCTCLAGCSFCAIMLVLNVGCHDDTTMEVTSAHLD---- 123
Query: 126 RVVPVTSRNRDA-----DMNEYGE------------TDDILIVKLRKGQELRLRAYAKKG 168
V+P N D ++++ GE ILI K+RKGQEL+++ AKKG
Sbjct: 124 -VIPYPEENLDTSDSGEELSKRGEYFGHPVGKNEPGVAPILICKIRKGQELKVKCVAKKG 182
Query: 169 FGKEHAKWNPTAG 181
KEHAKW+P +
Sbjct: 183 IAKEHAKWSPCSA 195
>gi|302679472|ref|XP_003029418.1| hypothetical protein SCHCODRAFT_39441 [Schizophyllum commune H4-8]
gi|300103108|gb|EFI94515.1| hypothetical protein SCHCODRAFT_39441, partial [Schizophyllum
commune H4-8]
Length = 257
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 114/195 (58%), Gaps = 28/195 (14%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P+V I L + V F +E+ +LS ANS RRV +A+ PT+AID V+ E N+TVL DEFIA
Sbjct: 1 PNVIIRALEKDRVDFVLENVDLSFANSFRRVMMADIPTVAIDLVEFETNTTVLPDEFIAH 60
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQ------TRHVTTADL 120
R+G++PL SD + + Y+RDCTC+ +C C++E LDVKC +D ++H+ ++
Sbjct: 61 RLGMVPLISDNCEEGMRYTRDCTCLSWCQYCAIELVLDVKCTEDNMSMDVTSKHLDVQNV 120
Query: 121 KSTDARVV--------------PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAK 166
+ PVT R DA + ILI ++RKGQ L++R AK
Sbjct: 121 QPGQPSGAEGDEMASRPPQFGWPVTYREPDA--------EPILIARIRKGQALKVRCIAK 172
Query: 167 KGFGKEHAKWNPTAG 181
KG KEH+KW+P +
Sbjct: 173 KGIAKEHSKWSPCSA 187
>gi|367000601|ref|XP_003685036.1| hypothetical protein TPHA_0C04510 [Tetrapisispora phaffii CBS 4417]
gi|357523333|emb|CCE62602.1| hypothetical protein TPHA_0C04510 [Tetrapisispora phaffii CBS 4417]
Length = 310
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 111/175 (63%), Gaps = 5/175 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + T +NV F V + +L++AN+ RRV IAE PT+AID V++ +N+TVL+DEFIA
Sbjct: 6 PQVKIREATKDNVDFIVSNVDLAMANAFRRVMIAEIPTLAIDSVEVISNTTVLADEFIAH 65
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GL+PL S + ++++ YSRDC C D C +CSV TL + T +V + DL
Sbjct: 66 RLGLVPLQSAD-IEQLEYSRDCFCEDHCDKCSVVLTLQALGESESTTNVYSKDL----VI 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
V + RN + + E + +LI KLRKGQEL+ AKKG KEHAKW P A
Sbjct: 121 VSDLLGRNIGHPIIQDKEGNGVLICKLRKGQELKFTCIAKKGIAKEHAKWGPAAA 175
>gi|25012925|gb|AAN71549.1| RH25219p [Drosophila melanogaster]
Length = 117
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/86 (83%), Positives = 81/86 (94%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSV IT+LTD+NVKF +EDTELSVANSLRRVFIAETPT+AIDWVQLEANSTVLS
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSR 86
DEF+A RIGLIPL SD+VV+R+ Y+R
Sbjct: 61 DEFLAHRIGLIPLISDDVVERLQYTR 86
>gi|156055988|ref|XP_001593918.1| hypothetical protein SS1G_05346 [Sclerotinia sclerotiorum 1980]
gi|154703130|gb|EDO02869.1| hypothetical protein SS1G_05346 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 335
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 104/174 (59%), Gaps = 5/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V IT+ +V F++ + +LS ANSLRR ++E PT+AID VQ+EAN++VL+DEFIA
Sbjct: 15 PQVKITEAGSHHVDFELSNVDLSFANSLRRTILSEVPTIAIDRVQIEANTSVLADEFIAH 74
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S D ++Y+RDC C C CSV TL +C D+ V DL R
Sbjct: 75 RLGLIPLNSKN-CDDVIYTRDCDCDGNCELCSVTLTLHARCTGDEIMKVYARDLVVDPQR 133
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D + G +I KLRKGQELR++ A KG KEHAKW PTA
Sbjct: 134 ANKWVGNPVITDPDGLGP----VIAKLRKGQELRMKCIALKGIAKEHAKWAPTA 183
>gi|154310335|ref|XP_001554499.1| RNA polymerase II subunit 3 [Botryotinia fuckeliana B05.10]
gi|347828820|emb|CCD44517.1| similar to DNA-directed RNA polymerase II subunit RPB3 [Botryotinia
fuckeliana]
Length = 336
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 104/174 (59%), Gaps = 5/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V IT+ +V F++ + +LS ANSLRR ++E PT+AID VQ+EAN++VL+DEFIA
Sbjct: 15 PQVKITEAGSHHVDFELSNVDLSFANSLRRTVLSEVPTIAIDRVQIEANTSVLADEFIAH 74
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S D ++Y+RDC C C CSV TL +C D+ V DL R
Sbjct: 75 RLGLIPLNSKN-CDDVIYTRDCDCEGNCELCSVTLTLHARCTGDEIMKVYARDLVVDPQR 133
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D + G +I KLRKGQELR++ A KG KEHAKW PTA
Sbjct: 134 ANKWVGNPVITDPDGLGP----VIAKLRKGQELRMKCIALKGIAKEHAKWAPTA 183
>gi|194761112|ref|XP_001962776.1| GF19666 [Drosophila ananassae]
gi|190616473|gb|EDV31997.1| GF19666 [Drosophila ananassae]
Length = 125
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/85 (83%), Positives = 80/85 (94%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSV IT+LTD+NVKF +EDTELSVANSLRRVFIAETPT+AIDWVQLEANSTVLS
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYS 85
DEF+A RIGLIPL SD+VV+R+ Y+
Sbjct: 61 DEFLAHRIGLIPLISDDVVERLQYT 85
>gi|388581049|gb|EIM21360.1| DNA-directed RNA polymerase II subunit RPB3 [Wallemia sebi CBS
633.66]
Length = 316
Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/184 (44%), Positives = 112/184 (60%), Gaps = 11/184 (5%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + L E + F +ED +L++AN+LRR+ IA+ PTMAID V +E NS+VL DEFIA R+
Sbjct: 3 VRVRSLESERINFVLEDVDLALANALRRILIADLPTMAIDIVNIEENSSVLVDEFIAHRL 62
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK------- 121
G++PL S I Y+RDC C+D C +CSVE L++KC +T VT+ L+
Sbjct: 63 GMVPLISTACDKLINYNRDCVCLDHCPKCSVELELNIKCTTPETVLVTSNHLQIKGQVAN 122
Query: 122 STDARVV--PVT-SRNRDADMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
T ++ P+ N +N + E I + KLR+GQELR+ AKKG KEHAKW
Sbjct: 123 DTSGNLIDPPIGLPDNFGLPINYHQEGAYPITLCKLRQGQELRINCIAKKGINKEHAKWG 182
Query: 178 PTAG 181
PT+
Sbjct: 183 PTSA 186
>gi|412990464|emb|CCO19782.1| DNA-directed RNA polymerase II subunit RPB3 [Bathycoccus prasinos]
Length = 298
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 112/181 (61%), Gaps = 11/181 (6%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
N P + I D T + VKF + +T LSVAN++RRV IAE PT+AID V++ NS+VL DEF
Sbjct: 2 GNTPKIIIRDATSDFVKFTLSNTCLSVANAVRRVAIAEVPTVAIDLVEIVENSSVLCDEF 61
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSE----CSVEFTLDVKCVDDQTRHVTTAD 119
IA R+GL+PL SD D +L S ++ E +V L VKC D T VTT
Sbjct: 62 IAHRLGLVPLVSDSASDYMLPS------EYVGEDEAKINVHLNLAVKCSSDHTLDVTTNH 115
Query: 120 LKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
L DA+ +PV D+D N+ E +LIVKLRK QEL ++ A+KG GK+HAKW+P
Sbjct: 116 LICADAKFLPVNFHPIDSDSNKQ-EPPGVLIVKLRKNQELVVKCIARKGIGKDHAKWSPV 174
Query: 180 A 180
A
Sbjct: 175 A 175
>gi|408391899|gb|EKJ71265.1| hypothetical protein FPSE_08504 [Fusarium pseudograminearum CS3096]
Length = 340
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 104/175 (59%), Gaps = 6/175 (3%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
QP V I+ +V F++ T LS AN++RRV AE PT+AID V++E NS+VL+DEFIA
Sbjct: 17 QPQVKISAADHMHVDFELSKTNLSFANAVRRVIQAEVPTIAIDLVEIETNSSVLADEFIA 76
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+GLIPL S V + + YSRDC C +C +CSV TL KC D+ V DL D
Sbjct: 77 HRLGLIPLDSKGVAE-LNYSRDCDCEQYCEQCSVTLTLHAKCTSDEIMKVYARDL-VVDG 134
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
R D YG LI KLRK QEL++ AKKG KEHAKW PT+
Sbjct: 135 RHGNSVGSPMIMDPEGYG----CLIAKLRKHQELKISCIAKKGIAKEHAKWMPTS 185
>gi|46109130|ref|XP_381623.1| hypothetical protein FG01447.1 [Gibberella zeae PH-1]
Length = 337
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 104/175 (59%), Gaps = 6/175 (3%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
QP V I+ +V F++ T LS AN++RRV AE PT+AID V++E NS+VL+DEFIA
Sbjct: 14 QPQVKISAADHMHVDFELSKTNLSFANAVRRVIQAEVPTIAIDLVEIETNSSVLADEFIA 73
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+GLIPL S V + + YSRDC C +C +CSV TL KC D+ V DL D
Sbjct: 74 HRLGLIPLDSKGVAE-LNYSRDCDCEQYCEQCSVTLTLHAKCTSDEIMKVYARDL-VVDG 131
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
R D YG LI KLRK QEL++ AKKG KEHAKW PT+
Sbjct: 132 RHGNSVGSPMIMDPEGYG----CLIAKLRKHQELKISCIAKKGIAKEHAKWMPTS 182
>gi|68478788|ref|XP_716556.1| hypothetical protein CaO19.1248 [Candida albicans SC5314]
gi|68478891|ref|XP_716500.1| hypothetical protein CaO19.8832 [Candida albicans SC5314]
gi|46438170|gb|EAK97505.1| hypothetical protein CaO19.8832 [Candida albicans SC5314]
gi|46438227|gb|EAK97561.1| hypothetical protein CaO19.1248 [Candida albicans SC5314]
gi|238881321|gb|EEQ44959.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Candida albicans
WO-1]
Length = 318
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 115/174 (66%), Gaps = 6/174 (3%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
PSV I + ++V F +++ +L+VANS+RR IAE PT+AID V+++ N++VL+DEF++
Sbjct: 9 PSVTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S E +D + YSRDCTC ++CS+CSV L C + T +V +DL+ +
Sbjct: 69 RLGLIPLVS-EGIDNLTYSRDCTCDNYCSKCSVTLQLIANCATESTMNVYASDLQ----K 123
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ S+ D + + + LI KLRK QEL L AKKG KEHAKW+PTA
Sbjct: 124 MSHNGSKLGDPVIRD-PQARGPLICKLRKHQELSLTCIAKKGIAKEHAKWSPTA 176
>gi|241954894|ref|XP_002420168.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
gi|223643509|emb|CAX42390.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
Length = 313
Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 113/174 (64%), Gaps = 6/174 (3%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
PSV I + ++V F +++ +L+VANS+RR IAE PT+AID V+++ N++VL+DEF++
Sbjct: 9 PSVTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S E +D + YSRDCTC ++CS+CSV L C + T +V +DL+
Sbjct: 69 RLGLIPLVS-EGIDNLTYSRDCTCDNYCSKCSVTLQLVANCATESTMNVYASDLQKMSHN 127
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S+ D + + + LI KLRK QEL L AKKG KEHAKW+PTA
Sbjct: 128 ----GSKLGDPVIRD-PQARGPLICKLRKHQELSLTCIAKKGIAKEHAKWSPTA 176
>gi|358397037|gb|EHK46412.1| hypothetical protein TRIATDRAFT_153717, partial [Trichoderma
atroviride IMI 206040]
Length = 377
Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 102/175 (58%), Gaps = 6/175 (3%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
QP V I+ V F++ T L AN+LRR+ AE PT+AID V++E NS+VL+DEFIA
Sbjct: 17 QPQVKISAADSTRVDFELSRTNLPFANALRRIIQAEVPTIAIDLVEIEVNSSVLADEFIA 76
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+GLIPL S + V+ + YSRDC C +C CSV TL KC D+ V DL D
Sbjct: 77 HRLGLIPLDS-KGVNELNYSRDCDCEQYCEHCSVSLTLHAKCTSDEIMKVYARDL-VVDG 134
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
R D G LI KLRKGQEL++ AKKG KEHAKW PT+
Sbjct: 135 RHAGSVGNAVITDPEGLG----CLIAKLRKGQELKITCIAKKGIAKEHAKWMPTS 185
>gi|400600522|gb|EJP68196.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Beauveria bassiana ARSEF 2860]
Length = 350
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/177 (47%), Positives = 106/177 (59%), Gaps = 6/177 (3%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
A QP V + V+F++ T LS ANSLRRV AE PT+AID V++E N++VL+DEF
Sbjct: 15 AEQPHVTVLAADTTKVEFELSRTNLSFANSLRRVIQAEVPTVAIDLVEIEINTSVLADEF 74
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
IA R+GLIPL S + VD + YSRDC C +C +CS+ TL KC D+ V DL
Sbjct: 75 IAHRLGLIPLDSKD-VDELNYSRDCDCEQYCEQCSITLTLHAKCTSDENMKVYARDL-IV 132
Query: 124 DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D R D + G L+ KLR+ QELRL+ AKKG KEHAKW PT+
Sbjct: 133 DGRHATSIGTPIITDPDGVG----CLLAKLRRDQELRLKCVAKKGIAKEHAKWMPTS 185
>gi|319411912|emb|CBQ73955.1| related to RPB3-DNA-directed RNA polymerase II chain [Sporisorium
reilianum SRZ2]
Length = 350
Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 111/188 (59%), Gaps = 13/188 (6%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
+++P + + L ++ F +E+ +LS ANSLRR+ IA+ PT+AID V++ N+TVL DEF
Sbjct: 9 SSRPKITVRQLNRDHANFILENVDLSFANSLRRIMIADIPTVAIDMVEVRNNTTVLPDEF 68
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
+A R+G+IPL S + ++ RDC C D C CSVE TL +C VT+ DL +
Sbjct: 69 LAHRLGMIPLLSMDCAKALVDHRDCACEDGCDRCSVELTLRARCTTRGNLEVTSRDLIRS 128
Query: 124 -----------DARVVPVTSRNRDAD--MNEYGETDDILIVKLRKGQELRLRAYAKKGFG 170
DA P ++ D + G T I++VK+ KGQEL LR A+KGF
Sbjct: 129 DTIESATIYDDDAMAEPAAPKHPDFGRPVGHDGSTPPIMLVKMSKGQELDLRCIARKGFA 188
Query: 171 KEHAKWNP 178
KEHAKW+P
Sbjct: 189 KEHAKWSP 196
>gi|213405883|ref|XP_002173713.1| DNA-directed RNA polymerase II subunit RPB3 [Schizosaccharomyces
japonicus yFS275]
gi|212001760|gb|EEB07420.1| DNA-directed RNA polymerase II subunit RPB3 [Schizosaccharomyces
japonicus yFS275]
Length = 308
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 80/181 (44%), Positives = 115/181 (63%), Gaps = 15/181 (8%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
+P+V I ++ +V+F + +T+LS+ANSLRRV + E PT+AID V++ N++V+ DEF+A
Sbjct: 4 EPNVTIKNIGKNSVEFVLSNTDLSLANSLRRVVLGEIPTVAIDLVEISVNTSVMPDEFLA 63
Query: 66 SRIGLIPLTSDEVVD----RILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL- 120
R+G+IPL S+ + + + Y+R+C C +C++CSVE +L+ KC D T V DL
Sbjct: 64 HRLGMIPLNSNNIDEPPPVGLEYTRNCDCDQYCNKCSVELSLNAKCTGDGTMEVYARDLV 123
Query: 121 -KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
S PV AD +G LI+KLRK QE+ LR AKKG KEHAKW+PT
Sbjct: 124 VDSNSTLGQPVL-----ADARSHGP----LILKLRKEQEVSLRCIAKKGIAKEHAKWSPT 174
Query: 180 A 180
A
Sbjct: 175 A 175
>gi|50418977|ref|XP_458009.1| DEHA2C07546p [Debaryomyces hansenii CBS767]
gi|49653675|emb|CAG86069.1| DEHA2C07546p [Debaryomyces hansenii CBS767]
Length = 311
Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 111/176 (63%), Gaps = 11/176 (6%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I E+V F ++D +L++ANS+RR +AE PT+AID V++E N++VL+DEFI+
Sbjct: 11 PRVTIRHTDKEHVDFILKDVDLAMANSMRRTMLAEVPTLAIDLVEIEVNTSVLADEFISH 70
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS--TD 124
R+GLIPL S E +D + YSRDCTC +C+ CSV+ L KC D T V ++DL
Sbjct: 71 RLGLIPLNS-EGIDNLSYSRDCTCDQYCANCSVKLELTAKCDTDSTMSVYSSDLAKFHNG 129
Query: 125 ARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+++ +R D + G LI KLRK QELR+ AKKG KEHAKW+P
Sbjct: 130 SKLGDPVAR----DNHRKGP----LICKLRKHQELRITCIAKKGIAKEHAKWSPCG 177
>gi|346972452|gb|EGY15904.1| DNA-directed RNA polymerase II subunit RPB3 [Verticillium dahliae
VdLs.17]
Length = 342
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 103/174 (59%), Gaps = 5/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
PSV I++ + V F + + LS ANSLRRV AE P +AID V++EAN++VL+DEFIA
Sbjct: 15 PSVKISNTEADRVVFNLSNCHLSFANSLRRVIQAEVPIVAIDLVEIEANTSVLADEFIAH 74
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S E + YSRDC C +C CSV+ TL +C D V +DL R
Sbjct: 75 RLGLIPLHSKEAA-SLHYSRDCDCEQYCDNCSVKLTLHARCTSDDIMKVYASDLVVDSFR 133
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D + G LI KLR+GQEL++ AKKG KEHAKW PT+
Sbjct: 134 QNNTVGNPVITDPDGLGS----LIAKLRRGQELKVTCIAKKGIAKEHAKWMPTS 183
>gi|344232873|gb|EGV64746.1| insert subdomain of RNA polymerase alpha subunit [Candida tenuis
ATCC 10573]
Length = 305
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 110/175 (62%), Gaps = 7/175 (4%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P++ I ++V F +++ +L+VANS+RR +AE PT+AID V+++ N++VL+DEFIA
Sbjct: 11 PAITIRSSERDHVNFVLKNVDLAVANSVRRTMMAEVPTLAIDLVEIDVNTSVLADEFIAH 70
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL SD +D + YSRDCTC +C++CSV+ L KC D T ++ +DL
Sbjct: 71 RLGLIPLVSDS-IDELSYSRDCTCDQYCNKCSVKLELAAKCDTDSTMNIYASDLAKFQNG 129
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
RDA + LI KLRK QELR+ AKKG KEHAKW+P +
Sbjct: 130 STLGDPVIRDA------QGKGSLICKLRKHQELRITCIAKKGIAKEHAKWSPCSA 178
>gi|344305493|gb|EGW35725.1| hypothetical protein SPAPADRAFT_58923 [Spathaspora passalidarum
NRRL Y-27907]
Length = 302
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 113/178 (63%), Gaps = 13/178 (7%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
PSV I + ++V F +++ L+ ANS+RR +AE PT+AID V+++ N++VL+DEFIA
Sbjct: 10 PSVTIREAERDHVNFILKNVSLASANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFIAH 69
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS--TD 124
R+GLIPL S E ++ + YSRDCTC ++CS+CSV L KC D T V +DL
Sbjct: 70 RLGLIPLVS-EGIENLTYSRDCTCDNYCSKCSVRLELTAKCDSDSTMSVYASDLAKFHNG 128
Query: 125 ARVV-PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
+R+ PV RDA + LI KLRK QELR+ AKKG KEHAKW+P A
Sbjct: 129 SRLGDPVI---RDA------QGRGSLICKLRKHQELRIVCIAKKGIAKEHAKWSPCAA 177
>gi|121715950|ref|XP_001275584.1| RNA polymerase II subunit 3 [Aspergillus clavatus NRRL 1]
gi|119403741|gb|EAW14158.1| RNA polymerase II subunit 3 [Aspergillus clavatus NRRL 1]
Length = 333
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 101/174 (58%), Gaps = 4/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + +V F++ +L+ ANSLRRV +AE PTMAID V++E N++VL DEF+A
Sbjct: 12 PQVTVREAEPYHVDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVERNTSVLPDEFLAH 71
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + Y+RDC C D C+ CSV TL +C D+ V DL T R
Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCDCEDRCARCSVTLTLHARCTGDEIMPVYARDLVVTGER 131
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D G LI KLR+GQEL++ AKKG KEHAKW PTA
Sbjct: 132 ANEWVGTPVLTDPEGKGS----LICKLRRGQELKMTCIAKKGMAKEHAKWAPTA 181
>gi|392593588|gb|EIW82913.1| insert subdomain of RNA polymerase alpha subunit [Coniophora
puteana RWD-64-598 SS2]
Length = 418
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 121/192 (63%), Gaps = 24/192 (12%)
Query: 5 NQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFI 64
++P + I ++ ++V F +E+ +L++ANS+RRV +A+ PT+AID V+++AN+TVL DEFI
Sbjct: 7 SEPILKIREVKKDSVNFTLENVDLALANSIRRVVMADIPTVAIDMVEVQANTTVLPDEFI 66
Query: 65 ASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTD 124
A R+G++PL S + + RDCTC + C CS+E LD+ C D++T VT+ L+
Sbjct: 67 AHRLGMVPLVSTNCDEAMRLLRDCTCEEGCQFCSIELRLDISCHDNRTLEVTSNHLE--- 123
Query: 125 ARVVP--------------VTSRNRDADMNEYGETD----DILIVKLRKGQELRLRAYAK 166
VVP ++ R+ D + G+ D +LI K+RKGQELR++ AK
Sbjct: 124 --VVPFPFQDTAESLSGDELSKRSEDFG-HPVGKNDPSAQPVLICKMRKGQELRIKCIAK 180
Query: 167 KGFGKEHAKWNP 178
KG KEHAKW+P
Sbjct: 181 KGIAKEHAKWSP 192
>gi|409080609|gb|EKM80969.1| hypothetical protein AGABI1DRAFT_112673 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426197524|gb|EKV47451.1| hypothetical protein AGABI2DRAFT_192637 [Agaricus bisporus var.
bisporus H97]
Length = 380
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 112/185 (60%), Gaps = 12/185 (6%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
+P V I +L + V F +E+ +L+ ANS RRV +A+ PT+AID V++E N+TVL DEFIA
Sbjct: 8 EPIVRIRELAKDKVNFVLENVDLAFANSFRRVMMADLPTVAIDMVEIEINTTVLPDEFIA 67
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL----- 120
R+G IPL S + I Y+RDCTC+ C CS+ L V C DD T +VT+ L
Sbjct: 68 HRLGQIPLLSSNCDEAIRYTRDCTCLAGCPFCSIMLNLHVSCNDDNTMNVTSNHLDIMPF 127
Query: 121 -KSTDARVVPVTSRNRDADM--NEYGETD----DILIVKLRKGQELRLRAYAKKGFGKEH 173
+ + + P ++ + + G+ D ILI K+RKGQEL+ + AKKG KEH
Sbjct: 128 PEDQEQQTDPGEELSKRGEYFGHPVGKNDPNASPILICKIRKGQELKAKCTAKKGIAKEH 187
Query: 174 AKWNP 178
AKW+P
Sbjct: 188 AKWSP 192
>gi|340517857|gb|EGR48100.1| predicted protein [Trichoderma reesei QM6a]
Length = 375
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 103/175 (58%), Gaps = 6/175 (3%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
QP V I+ V F++ T L AN+LRRV AE PT+AID V++E NS+VL+DEFIA
Sbjct: 17 QPQVKISAADSTRVDFELSRTNLPFANALRRVIQAEVPTIAIDLVEMEVNSSVLADEFIA 76
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+GLIPL S + V+ + YSRDC C +C +CSV TL KC D+ V DL D
Sbjct: 77 HRLGLIPLDS-KGVNELNYSRDCDCEQYCEQCSVSLTLHAKCTSDEIMKVYARDL-VVDG 134
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
R D + G LI KLRK QEL++ AKKG KEHAKW PT+
Sbjct: 135 RHANSVGSPIITDPDGLG----CLIAKLRKDQELKITCIAKKGIAKEHAKWMPTS 185
>gi|395332694|gb|EJF65072.1| RBP11-like subunits of RNA polymerase [Dichomitus squalens LYAD-421
SS1]
Length = 410
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 114/199 (57%), Gaps = 35/199 (17%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
+P V I DL +V F +E+ +LS ANS RRV IA+ PT+AID V++E N+TVL DEFIA
Sbjct: 7 EPIVRIRDLKKNSVNFVLENVDLSFANSFRRVMIADIPTVAIDMVEIETNTTVLPDEFIA 66
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVD-DQTRHVTTADLKSTD 124
R+G+IPL S + + Y+RDCTC C C++E L+V C + + T H+T+ L+
Sbjct: 67 HRLGMIPLVSTMCDEAMRYTRDCTCEVRCQYCAIELQLNVACHEANTTMHITSNMLE--- 123
Query: 125 ARVVPVTSRNRDADMNEYGETDD-------------------------ILIVKLRKGQEL 159
VVP N+ Y +TDD ILI K+R GQEL
Sbjct: 124 --VVPT---NKPGSYGSY-DTDDGGEELAKRVENFGHPIGKDDPDVPPILICKIRMGQEL 177
Query: 160 RLRAYAKKGFGKEHAKWNP 178
R+R AKKG KEHAKW+P
Sbjct: 178 RVRCIAKKGIAKEHAKWSP 196
>gi|119481479|ref|XP_001260768.1| RNA polymerase II subunit 3 [Neosartorya fischeri NRRL 181]
gi|119408922|gb|EAW18871.1| RNA polymerase II subunit 3 [Neosartorya fischeri NRRL 181]
Length = 336
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 100/174 (57%), Gaps = 4/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + V F++ +L+ ANSLRRV +AE PTMAID V++E N++VL DEF+A
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAH 71
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + Y+RDC C D C+ CSV TL +C D+ V DL + R
Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCECEDHCARCSVTLTLHARCTGDEIMPVYARDLVVSGER 131
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D G LI KLR+GQEL++ AKKG KEHAKW PTA
Sbjct: 132 ANEWVGDPVITDPEGKGP----LICKLRRGQELKMTCVAKKGIAKEHAKWAPTA 181
>gi|354547085|emb|CCE43818.1| hypothetical protein CPAR2_500440 [Candida parapsilosis]
Length = 317
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 110/174 (63%), Gaps = 7/174 (4%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
PS+ I + + V F + + +LSVAN+LRR +AE PT+AID V+++ N++VL+DEF+A
Sbjct: 7 PSITIRERELDRVDFVLGNVDLSVANALRRTMLAEVPTLAIDLVEIDVNTSVLADEFLAH 66
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S E ++ + YSRDCTC ++C +CSV L KC D T +V +DL +
Sbjct: 67 RLGLIPLVS-ENIENLKYSRDCTCDNYCPQCSVTLELTAKCDTDSTMNVYASDLFKPPSP 125
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
T R D E G +I KLRK QELRL AKKG KEHAKW+P A
Sbjct: 126 YSLGTPVYR--DHMERGP----IICKLRKHQELRLTCIAKKGIAKEHAKWSPCA 173
>gi|443895704|dbj|GAC73049.1| RNA polymerase II, subunit POLR2C/RPB3 [Pseudozyma antarctica T-34]
Length = 346
Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 108/188 (57%), Gaps = 13/188 (6%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
A +P + + L + F +E+ +LS ANSLRR+ IA+ PT+AID V++ N+TVL DEF
Sbjct: 12 AQRPKITVRQLNRDRANFILENVDLSFANSLRRIMIADIPTVAIDMVEIRNNTTVLPDEF 71
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
+A R+GLIPL S + ++ RDC C D C CSVE TL +C VT+ DL +
Sbjct: 72 LAHRLGLIPLLSMDCAKALVDHRDCACEDGCDRCSVELTLRARCTTRGNLEVTSRDLIRS 131
Query: 124 -----------DARVVPVTSRNRDAD--MNEYGETDDILIVKLRKGQELRLRAYAKKGFG 170
DA P ++ D + G I++VK+ KGQEL +R A+KGF
Sbjct: 132 DSIEGAQMFDDDAMNEPAAPKHPDFGRPVGHDGSMAPIMLVKMSKGQELDIRCIARKGFA 191
Query: 171 KEHAKWNP 178
KEHAKW+P
Sbjct: 192 KEHAKWSP 199
>gi|126273908|ref|XP_001387335.1| 45 kDa subunit of RNA polymerase II [Scheffersomyces stipitis CBS
6054]
gi|126213205|gb|EAZ63312.1| 45 kDa subunit of RNA polymerase II [Scheffersomyces stipitis CBS
6054]
Length = 315
Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 115/179 (64%), Gaps = 11/179 (6%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
++ PSV I + ++V F + D ++++ANS+RRV +AE PT+AID V+++ N++VL+DEF
Sbjct: 6 SDGPSVTIRESERDHVNFILRDVDMAMANSVRRVMLAEVPTLAIDLVEIDVNTSVLADEF 65
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS- 122
++ R+GL+PL S E ++ + YSRDCTC ++C +CSV L KC D T +V DL
Sbjct: 66 LSHRLGLVPLVS-EGIENLTYSRDCTCDNYCPKCSVRLELTAKCDTDSTMNVYATDLAKF 124
Query: 123 -TDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+R+ R D+ + G LI KLRK QELRL AKKG KEHAKW+P +
Sbjct: 125 HNGSRLGDPVVR----DVQKRGP----LICKLRKHQELRLTCIAKKGIAKEHAKWSPCS 175
>gi|358378283|gb|EHK15965.1| hypothetical protein TRIVIDRAFT_195864 [Trichoderma virens Gv29-8]
Length = 338
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 82/175 (46%), Positives = 103/175 (58%), Gaps = 6/175 (3%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
QP V I+ V F++ T L AN+LRR+ AE PT+AID V++E NS+VL+DEFIA
Sbjct: 17 QPQVKISAADSTRVDFELSRTNLPFANALRRIIQAEVPTIAIDLVEIEVNSSVLADEFIA 76
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+GLIPL S + V+ + YSRDC C +C +CSV TL KC D+ V DL + D
Sbjct: 77 HRLGLIPLDS-KGVNELNYSRDCDCEQYCEQCSVSLTLHAKCTSDEIMKVYARDLVA-DG 134
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
R D G LI KLRK QEL++ AKKG KEHAKW PT+
Sbjct: 135 RHANSVGTPIITDPEGLG----CLIAKLRKDQELKITCIAKKGIAKEHAKWMPTS 185
>gi|448514979|ref|XP_003867217.1| RNA polymerase II subunit B44 [Candida orthopsilosis Co 90-125]
gi|380351556|emb|CCG21779.1| RNA polymerase II subunit B44 [Candida orthopsilosis]
Length = 317
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 110/176 (62%), Gaps = 9/176 (5%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
PS+ I + ++ V F + + +LSVAN+LRR +AE PT+AID V+++ N++VL+DEF+A
Sbjct: 7 PSITIREQEEDRVDFVLGNVDLSVANALRRTMLAEVPTLAIDLVEIDVNTSVLADEFLAH 66
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL-KSTDA 125
R+GLIPL S E ++ + YSRDCTC ++C +CSV L KC D T +V +DL K +
Sbjct: 67 RLGLIPLNS-ENIETLKYSRDCTCDNYCPKCSVTLELTAKCDTDSTMNVYASDLFKLANG 125
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
+ AD +I KLRK QELRL AKKG KEHAKW+P A
Sbjct: 126 SSLGNPVVRDQADRGS-------IICKLRKHQELRLTCIAKKGIAKEHAKWSPCAA 174
>gi|320583437|gb|EFW97650.1| DNA-directed RNA polymerase II subunit, putative [Ogataea
parapolymorpha DL-1]
Length = 311
Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 111/177 (62%), Gaps = 5/177 (2%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
+ +P V I + V F + D +LS+ANSLRR +AE PT+AID V++ N++VL+DEF
Sbjct: 2 SEEPQVTIRKAGRDEVDFILGDVDLSLANSLRRTMLAEVPTLAIDLVEILVNTSVLADEF 61
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
++ R+GL+PL S++ +D++ Y+RDCTC D C +CSV L C D+T +V ++ L
Sbjct: 62 LSHRLGLVPLESED-IDQLKYTRDCTCEDHCEKCSVTLELRAHCDSDETMNVYSSHL--- 117
Query: 124 DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V P T N + E +L+ KL+K Q+L +R AKKG KEHAKW+P A
Sbjct: 118 -TIVSPNTGLNLGTPVVRDPERKGVLLCKLKKHQQLHVRCVAKKGIAKEHAKWSPCA 173
>gi|384245015|gb|EIE18511.1| DNA-directed RNA polymerase II, 36 kDa polypeptide [Coccomyxa
subellipsoidea C-169]
Length = 303
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 106/178 (59%), Gaps = 13/178 (7%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I DL D+ +F + DT+ SVAN+LRR+ + E PT+AID V++E N+TVL+DEFIA
Sbjct: 11 PQVQIRDLRDDFCEFVLSDTDPSVANALRRIMLVEVPTIAIDLVEIEENTTVLNDEFIAH 70
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK----S 122
R+GLIPL S V D DF VE TL+VKC + T VT+ DL+
Sbjct: 71 RLGLIPLVSSAVGGMKGVFEDAGEADF---LDVEMTLNVKCTSEDTMEVTSNDLQLDANH 127
Query: 123 TDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D R V D E IL+VK+RK QELRL+A A+KG GK+HAKW P A
Sbjct: 128 PDVRPVGYVPGGYDP------ENRGILLVKMRKNQELRLKAIARKGIGKDHAKWIPVA 179
>gi|448089925|ref|XP_004196939.1| Piso0_004170 [Millerozyma farinosa CBS 7064]
gi|448094289|ref|XP_004197970.1| Piso0_004170 [Millerozyma farinosa CBS 7064]
gi|359378361|emb|CCE84620.1| Piso0_004170 [Millerozyma farinosa CBS 7064]
gi|359379392|emb|CCE83589.1| Piso0_004170 [Millerozyma farinosa CBS 7064]
Length = 308
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 107/174 (61%), Gaps = 7/174 (4%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I ++V F ++D +L+ AN+LRRV +AE PT+AID V ++ N++VL+DEF++
Sbjct: 11 PQVTIRQTDKDHVDFILKDADLATANALRRVMLAEVPTLAIDLVDIDVNTSVLADEFLSH 70
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S E ++ + YSRDCTC +C+ CSV+ L KC D T +V +DL
Sbjct: 71 RLGLIPLNS-EGIENLSYSRDCTCDQYCANCSVKLELTAKCDTDSTMNVYASDLAKFHNG 129
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
RD+ + LI KLRK QELRL AKKG KEHAKW+P A
Sbjct: 130 SKLGDPVIRDS------QQRGPLICKLRKHQELRLTCIAKKGIAKEHAKWSPCA 177
>gi|302908578|ref|XP_003049900.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730836|gb|EEU44187.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 335
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/175 (46%), Positives = 102/175 (58%), Gaps = 6/175 (3%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
QP V I+ +V F++ T L+ AN+LRRV AE PT+AID V++E NS+VL+DEFIA
Sbjct: 14 QPQVKISAADHTHVDFELSKTNLAFANALRRVIQAEVPTIAIDLVEIEINSSVLADEFIA 73
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+GLIPL S + V + SRDC C +C +CSV L KC D+ V DL D
Sbjct: 74 HRLGLIPLDS-KGVGELNNSRDCDCEQYCEQCSVTLNLHAKCTSDEIMKVYARDL-VVDG 131
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
R D YG LI KLRK QEL++ AKKG KEHAKW PT+
Sbjct: 132 RHANSVGSPVITDPEGYG----CLIAKLRKDQELKITCIAKKGIAKEHAKWMPTS 182
>gi|71001920|ref|XP_755641.1| RNA polymerase II subunit 3 [Aspergillus fumigatus Af293]
gi|66853279|gb|EAL93603.1| RNA polymerase II subunit 3 [Aspergillus fumigatus Af293]
gi|159129698|gb|EDP54812.1| RNA polymerase II subunit 3 [Aspergillus fumigatus A1163]
Length = 392
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 96/162 (59%), Gaps = 4/162 (2%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
V F++ +L+ ANSLRRV +AE PTMAID V++E N++VL DEF+A R+GLIPL S
Sbjct: 80 VDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNC 139
Query: 79 VDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDAD 138
+ Y+RDC C D C+ CSV TL +C D+ V DL + R D
Sbjct: 140 DQDVEYTRDCDCEDHCARCSVTLTLHARCTGDEIMPVYARDLVVSGERANEWVGDPVITD 199
Query: 139 MNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
G LI KLR+GQEL++ AKKG KEHAKW PTA
Sbjct: 200 PEGKGP----LICKLRRGQELKMTCVAKKGIAKEHAKWAPTA 237
>gi|67540164|ref|XP_663856.1| hypothetical protein AN6252.2 [Aspergillus nidulans FGSC A4]
gi|40739446|gb|EAA58636.1| hypothetical protein AN6252.2 [Aspergillus nidulans FGSC A4]
gi|259479538|tpe|CBF69852.1| TPA: RNA polymerase II subunit 3 (AFU_orthologue; AFUA_2G13090)
[Aspergillus nidulans FGSC A4]
Length = 333
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 100/174 (57%), Gaps = 4/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + V F++ +L+ ANSLRRV +AE PTMAID V++E NS+VL DE +A
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRVMLAEIPTMAIDIVEVEKNSSVLPDEMLAH 71
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + Y+RDC C D C+ CSV +L +C D+ V DL T R
Sbjct: 72 RLGLIPLDSKNCDQDVEYTRDCECEDHCARCSVTLSLHARCTSDEIMRVYARDLVITGER 131
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D + G LI KLR+GQEL++ AKKG KEH+KW PTA
Sbjct: 132 ANEWVGNPVITDPDGNGP----LICKLRRGQELKMTCIAKKGIAKEHSKWAPTA 181
>gi|83769667|dbj|BAE59802.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391869849|gb|EIT79042.1| RNA polymerase [Aspergillus oryzae 3.042]
Length = 342
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 99/174 (56%), Gaps = 4/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + V F++ +L+ ANSLRR +AE PT+AID V++E N++VL DEF+A
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRAMLAEVPTIAIDLVEVEKNTSVLPDEFLAH 71
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + Y+RDC C D C+ CSV TL +C D V DL + R
Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCECEDHCARCSVTLTLHARCTGDDIMRVYARDLVVSGER 131
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D E + LI KLR+GQEL++ AKKG KEHAKW PTA
Sbjct: 132 ANEWVGNPVITDP----EGNGPLICKLRRGQELKMTCIAKKGIAKEHAKWMPTA 181
>gi|238496743|ref|XP_002379607.1| RNA polymerase II subunit 3 [Aspergillus flavus NRRL3357]
gi|317146984|ref|XP_001821804.2| DNA-directed RNA polymerase II subunit RPB3 [Aspergillus oryzae
RIB40]
gi|220694487|gb|EED50831.1| RNA polymerase II subunit 3 [Aspergillus flavus NRRL3357]
Length = 338
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 99/174 (56%), Gaps = 4/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + V F++ +L+ ANSLRR +AE PT+AID V++E N++VL DEF+A
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRAMLAEVPTIAIDLVEVEKNTSVLPDEFLAH 71
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + Y+RDC C D C+ CSV TL +C D V DL + R
Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCECEDHCARCSVTLTLHARCTGDDIMRVYARDLVVSGER 131
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D E + LI KLR+GQEL++ AKKG KEHAKW PTA
Sbjct: 132 ANEWVGNPVITDP----EGNGPLICKLRRGQELKMTCIAKKGIAKEHAKWMPTA 181
>gi|358365833|dbj|GAA82455.1| RNA polymerase II subunit 3 [Aspergillus kawachii IFO 4308]
Length = 338
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 100/174 (57%), Gaps = 4/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + V F++ +L+ ANSLRRV +AE PTMAID V++E N++VL DEF+A
Sbjct: 12 PQVTVREAEPTRVDFKLTSVDLAFANSLRRVMLAEIPTMAIDLVEVEKNTSVLPDEFLAH 71
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + Y+RDC C D C+ CSV +L +C D V DL + R
Sbjct: 72 RLGLIPLVSKNCDQDVEYTRDCECEDHCARCSVTLSLHARCTGDDIMRVYARDLVVSGER 131
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D E + LI KLR+GQEL++ AKKG KEHAKW PT+
Sbjct: 132 ANEWVGNPVILDP----EGNGPLICKLRRGQELKMTCIAKKGIAKEHAKWMPTS 181
>gi|388854978|emb|CCF51481.1| related to RPB3-DNA-directed RNA polymerase II chain [Ustilago
hordei]
Length = 346
Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 109/188 (57%), Gaps = 13/188 (6%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
A +P + + L ++ F +E+ +LS ANSLRR+ IA+ PT+AID V++ N+TVL DEF
Sbjct: 9 ALRPKITVRQLNRDHANFILENVDLSFANSLRRIMIADIPTVAIDMVEIRNNTTVLPDEF 68
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
+A R+G++PL S + ++ RDC C D C CSVE TL +C VT+ DL +
Sbjct: 69 LAHRLGMVPLLSMDCSKALVDHRDCACEDGCDRCSVELTLRARCTTRGNLEVTSRDLIRS 128
Query: 124 -----------DARVVPVTSRNRDAD--MNEYGETDDILIVKLRKGQELRLRAYAKKGFG 170
DA P ++ D + G I++VK+ KGQEL +R A+KGF
Sbjct: 129 DTIENATIYDDDAMNEPAAPKHPDFGRPVGHDGSIPPIMLVKMSKGQELDIRCIARKGFA 188
Query: 171 KEHAKWNP 178
KEHAKW+P
Sbjct: 189 KEHAKWSP 196
>gi|323508505|dbj|BAJ77146.1| cgd1_2710 [Cryptosporidium parvum]
Length = 252
Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 110/176 (62%), Gaps = 4/176 (2%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
P IT+LT +++F + +T+LS+AN+LRR+ +AE PT+AID V + N++VL DEFI
Sbjct: 9 SPKAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFIV 68
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS-TD 124
R+GLIPL S + D R C C + C++CSVE+ LDV C TR+VT D++
Sbjct: 69 HRMGLIPLDSTNIRDFNFKDR-CECQERCNKCSVEYLLDVTCEGGATRNVTHYDIQPVAT 127
Query: 125 ARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ +VP+ +D ++ G + ILI KL GQ + +R A KG GK HAKW P +
Sbjct: 128 STLVPMPVPKKDDSVD--GMNNGILIAKLGPGQRIAMRMTACKGIGKFHAKWIPVS 181
>gi|67624207|ref|XP_668386.1| conjugation stage-specific protein [Cryptosporidium hominis TU502]
gi|54659581|gb|EAL38151.1| conjugation stage-specific protein [Cryptosporidium hominis]
Length = 355
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 110/176 (62%), Gaps = 4/176 (2%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
P IT+LT +++F + +T+LS+AN+LRR+ +AE PT+AID V + N++VL DEFI
Sbjct: 9 SPKAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFIV 68
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS-TD 124
R+GLIPL S + D R C C + C++CSVE+ LDV C TR+VT D++
Sbjct: 69 HRMGLIPLDSTNIRDFNFKDR-CECQERCNKCSVEYLLDVTCEGGATRNVTHYDIQPVAT 127
Query: 125 ARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ +VP+ +D ++ G + ILI KL GQ + +R A KG GK HAKW P +
Sbjct: 128 STLVPMPVPKKDDSVD--GMNNGILIAKLGPGQRIAMRMTACKGIGKFHAKWIPVS 181
>gi|66362260|ref|XP_628094.1| RNA polymerase II B3 subunit [Cryptosporidium parvum Iowa II]
gi|46227424|gb|EAK88359.1| RNA polymerase II B3 subunit [Cryptosporidium parvum Iowa II]
Length = 355
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 110/176 (62%), Gaps = 4/176 (2%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
P IT+LT +++F + +T+LS+AN+LRR+ +AE PT+AID V + N++VL DEFI
Sbjct: 9 SPKAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFIV 68
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS-TD 124
R+GLIPL S + D R C C + C++CSVE+ LDV C TR+VT D++
Sbjct: 69 HRMGLIPLDSTNIRDFNFKDR-CECQERCNKCSVEYLLDVTCEGGATRNVTHYDIQPVAT 127
Query: 125 ARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ +VP+ +D ++ G + ILI KL GQ + +R A KG GK HAKW P +
Sbjct: 128 STLVPMPVPKKDDSVD--GMNNGILIAKLGPGQRIAMRMTACKGIGKFHAKWIPVS 181
>gi|453089708|gb|EMF17748.1| insert subdomain of RNA polymerase alpha subunit [Mycosphaerella
populorum SO2202]
Length = 362
Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 120/191 (62%), Gaps = 20/191 (10%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P + I + TD++++F++ +T L++ANS+RRV +AE PT+AID ++EAN++VL+DEF+A
Sbjct: 16 PKITIRETTDKSIRFRLSNTSLALANSVRRVMLAEVPTIAIDLCEIEANTSVLADEFLAH 75
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVD-DQTRHVTTADLKSTDA 125
R+GLIPL++ + VD ++ RDCTC ++C CSV L+ + DQ V DL ++
Sbjct: 76 RLGLIPLST-KGVDEMVDFRDCTCDEYCDNCSVVLRLNAANRNSDQNLKVFARDL-FVES 133
Query: 126 RVVPVTSRNRDADMNEYGETDDI----------------LIVKLRKGQELRLRAYAKKGF 169
V + NR +N +DD+ LI +LR+GQELR++ AKKG
Sbjct: 134 GAPGVATYNRSNGVNGT-SSDDLPPRGAPIIGDPAGQGPLICQLRRGQELRIKCIAKKGI 192
Query: 170 GKEHAKWNPTA 180
KEHAKW PTA
Sbjct: 193 AKEHAKWAPTA 203
>gi|190348772|gb|EDK41297.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 305
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 106/166 (63%), Gaps = 11/166 (6%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
++V F ++D +LS+ANS+RR +AE PT+AID V+++ N++VL+DEF++ R+G+IPL S
Sbjct: 18 DHVDFILKDVDLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHRLGMIPLNS- 76
Query: 77 EVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS--TDARVVPVTSRN 134
E +D + YSRDCTC +C CSV+ L KC D T V DL +++ R
Sbjct: 77 EGIDNLSYSRDCTCDQYCPNCSVKLELTAKCDSDSTMSVYATDLAKFHNGSKLGDPVVR- 135
Query: 135 RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D ++ G LI KLRK QELRL AKKG KEHAKW+P A
Sbjct: 136 ---DHHQRGP----LICKLRKHQELRLTCIAKKGIAKEHAKWSPCA 174
>gi|71018933|ref|XP_759697.1| hypothetical protein UM03550.1 [Ustilago maydis 521]
gi|46099249|gb|EAK84482.1| hypothetical protein UM03550.1 [Ustilago maydis 521]
Length = 329
Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 109/188 (57%), Gaps = 13/188 (6%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
+++P + + L ++ F +E+ +LS ANSLRR+ IA+ PT+AID V++ N+TVL DE
Sbjct: 9 SSRPKITVRQLDRDHANFILENVDLSFANSLRRIMIADIPTVAIDMVEIRNNTTVLPDEM 68
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
+A R+G++PL S + ++ RDC C D C CSVE TL +C VT+ DL +
Sbjct: 69 LAHRLGMVPLLSMDCAKALVDHRDCACEDGCDRCSVELTLRARCTTRGNLEVTSRDLIRS 128
Query: 124 -----------DARVVPVTSRNRDAD--MNEYGETDDILIVKLRKGQELRLRAYAKKGFG 170
DA P ++ D + G I++VK+ KGQEL +R A+KGF
Sbjct: 129 DTIENATIYDDDAMAEPAAPKHPDFGRPVGHDGSIAPIMLVKMSKGQELDIRCIARKGFA 188
Query: 171 KEHAKWNP 178
KEHAKW+P
Sbjct: 189 KEHAKWSP 196
>gi|254573314|ref|XP_002493766.1| RNA polymerase II third largest subunit B44, part of central core
[Komagataella pastoris GS115]
gi|238033565|emb|CAY71587.1| RNA polymerase II third largest subunit B44, part of central core
[Komagataella pastoris GS115]
gi|328354411|emb|CCA40808.1| DNA-directed RNA polymerase II subunit RPB3 .5 [Komagataella
pastoris CBS 7435]
Length = 304
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 108/175 (61%), Gaps = 4/175 (2%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
+ +P V+I + D+ V+ + D LS+ANSLRR +AE PT+AID V+++ N++VL+DEF
Sbjct: 2 SKEPKVNIINAQDDEVELMLSDVNLSLANSLRRTMLAEVPTLAIDLVEIKMNTSVLADEF 61
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
I+ R+GLIPL S++ V+ + YSRDCTC D+C ECSV L + + TT S+
Sbjct: 62 ISHRLGLIPLVSED-VEEMKYSRDCTCEDYCDECSVVLELSAR---HEGEEGTTDVYSSS 117
Query: 124 DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+V + N + IL+ KLR QEL +R AKKG KEHAKW+P
Sbjct: 118 LIKVSGPGNLNVGEPVRRDDYDQGILLCKLRNHQELNIRCIAKKGIAKEHAKWSP 172
>gi|145231693|ref|XP_001399321.1| DNA-directed RNA polymerase II subunit RPB3 [Aspergillus niger CBS
513.88]
gi|134056224|emb|CAK37482.1| unnamed protein product [Aspergillus niger]
gi|350634315|gb|EHA22677.1| hypothetical protein ASPNIDRAFT_52135 [Aspergillus niger ATCC 1015]
Length = 338
Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 100/174 (57%), Gaps = 4/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + V F++ +L+ ANSLRRV ++E PTMAID V++E N++VL DEF+A
Sbjct: 12 PQVTVREAEPTRVDFKLTSVDLAFANSLRRVMLSEIPTMAIDLVEVEKNTSVLPDEFLAH 71
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + Y+RDC C D C+ CSV +L +C D V DL + R
Sbjct: 72 RLGLIPLISKNCDQDVEYTRDCECEDHCARCSVTLSLHARCTGDDIMRVYARDLVVSGER 131
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D E + LI KLR+GQEL++ AKKG KEHAKW PT+
Sbjct: 132 ANEWVGNPVILDP----EGNGPLICKLRRGQELKMTCIAKKGIAKEHAKWMPTS 181
>gi|403157658|ref|XP_003307056.2| hypothetical protein PGTG_00006 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163504|gb|EFP74050.2| hypothetical protein PGTG_00006 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 365
Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 112/189 (59%), Gaps = 20/189 (10%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
+Q V +T+L D++ F +E EL +ANSLRR IA+ T+AI V+ E N++VL DE
Sbjct: 16 GSQLQVKVTELDDQHAAFILEGIELGLANSLRRTMIADLTTIAIHSVEFEENTSVLPDEM 75
Query: 64 IASRIGLIPLTSDEVVDRIL--YSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK 121
IA R+GLIPL S++ +D+ L + RDCTC+ +C +CS+E L KC D+
Sbjct: 76 IAHRLGLIPLISED-LDKYLKNWQRDCTCLSYCDDCSIELVLSTKC-------TLVGDVL 127
Query: 122 STDARVVPVTSRNRDADMNEY----------GETDDILIVKLRKGQELRLRAYAKKGFGK 171
+ ++ + +T R A + GE +LI KLRKGQE+RL+ A KG G+
Sbjct: 128 AVNSHDLVITPREDGAHRGDVGKPYQFTMPGGEQPGVLITKLRKGQEVRLKCRAIKGIGQ 187
Query: 172 EHAKWNPTA 180
EHAKW+P +
Sbjct: 188 EHAKWSPVS 196
>gi|219121575|ref|XP_002181139.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407125|gb|EEC47062.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 320
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 111/194 (57%), Gaps = 16/194 (8%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPY P V I + + +KF + +++ SVAN+LRR+ IAE PT+AID V+ NSTVL+
Sbjct: 1 MPYQRFPRVEILSIQPQEIKFILSESDTSVANTLRRIMIAEVPTLAIDLVEFHENSTVLN 60
Query: 61 DEFIASRIGLIP--------LTSDEVVDRILYSRDCTCVDFCSECSVEFTLDV--KCVDD 110
DE+IA R+GLIP L + D L R+C C + C CSVEF LD+ K +
Sbjct: 61 DEYIAHRMGLIPVRYQPAESLKGSDCSDAFLPHRECVCYEHCMRCSVEFELDITYKVTGE 120
Query: 111 Q----TRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAK 166
+ VT+ DL S + V P ++D + + + + IVKL GQ L+L+A A+
Sbjct: 121 EDVLAPLTVTSKDLVSNNELVQPAHFLSQDE--QDEAQDEGVAIVKLGPGQRLKLKAIAR 178
Query: 167 KGFGKEHAKWNPTA 180
G KEHAKW P A
Sbjct: 179 MGISKEHAKWCPVA 192
>gi|393217477|gb|EJD02966.1| insert subdomain of RNA polymerase alpha subunit [Fomitiporia
mediterranea MF3/22]
Length = 284
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 107/188 (56%), Gaps = 12/188 (6%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
+P+V I + + V F +E+ +LS ANS+RRV +A+ PT+AID V+LE N++VL DEFIA
Sbjct: 5 EPTVRIRENKKDRVNFVLENVDLSFANSIRRVMMADVPTLAIDIVELEMNTSVLPDEFIA 64
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+G++PL S + I Y+RDCTC C C+V LDV C +D VT+ L
Sbjct: 65 HRLGMVPLISTNCEEAIRYNRDCTCEVHCDFCTVSLMLDVTCGEDGNLDVTSNHLDVIPV 124
Query: 126 RVVPVTSRNRDADMNEYGE------------TDDILIVKLRKGQELRLRAYAKKGFGKEH 173
+ ++N+ E +LI K+R GQ+++ R AKKG KEH
Sbjct: 125 NYTLLNDGEGGEEINKRPEKFGCPVGQGEPGVHPVLICKMRPGQQIKARCIAKKGIAKEH 184
Query: 174 AKWNPTAG 181
AKW+P +
Sbjct: 185 AKWSPCSA 192
>gi|403338254|gb|EJY68358.1| RNA polymerase II core subunit [Oxytricha trifallax]
Length = 329
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 110/177 (62%), Gaps = 7/177 (3%)
Query: 5 NQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFI 64
N+P + I +L+ +KF++ +T+LSVANSLRR+ IAE PTMAID V++ N++ L DEFI
Sbjct: 34 NEPEIKILELSKYVIKFELLNTDLSVANSLRRIIIAEVPTMAIDLVEVVENTSALHDEFI 93
Query: 65 ASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS-T 123
A R+GLIP+ S + VD+ +S C C C CSV+F L C D V T + +
Sbjct: 94 AHRLGLIPMQSFD-VDKFQFSDKCACSSKCVNCSVQFKLHAVCSDRDQMEVNTRHINPLS 152
Query: 124 DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
++ ++PV + ++ E D ILI+KL K Q+L + A+KG GK HAKW+ A
Sbjct: 153 ESSIMPVHYVD-----SQGKEEDPILIMKLSKNQQLDMNLIARKGTGKLHAKWSSVA 204
>gi|449298899|gb|EMC94913.1| hypothetical protein BAUCODRAFT_123413 [Baudoinia compniacensis
UAMH 10762]
Length = 389
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 110/196 (56%), Gaps = 23/196 (11%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I D + F ++ T L++ANSLRR +AE PT+AID V++E+N++VL DEF+A
Sbjct: 17 PRVTIRSANDTTISFVLQHTSLALANSLRRTILAEIPTIAIDLVEIESNTSVLPDEFLAH 76
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVD-DQTRHVTTADLKSTDA 125
R+GLIPL++ +V D + Y+RDC C +FC CSV L+V + D V DL T
Sbjct: 77 RMGLIPLSTRDVED-MFYTRDCACDEFCDNCSVVLQLNVANRNLDHNLKVFARDLTVTRV 135
Query: 126 RVVPVTS-------RNRDADMNEYG--------------ETDDILIVKLRKGQELRLRAY 164
P+T N A ++ + E L+ LRKGQ+L+LR
Sbjct: 136 DGTPITDPRSTAHLTNGAAGLHSHAEELPPRGFPILMDPEQKGPLLCSLRKGQDLKLRCI 195
Query: 165 AKKGFGKEHAKWNPTA 180
AKKG KEHAKW PTA
Sbjct: 196 AKKGIAKEHAKWAPTA 211
>gi|346323448|gb|EGX93046.1| RNA polymerase II subunit 3 [Cordyceps militaris CM01]
Length = 364
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 106/186 (56%), Gaps = 14/186 (7%)
Query: 4 ANQPSVHITDLTDENVK--------FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEAN 55
A QP V I + VK F + T L+ ANSLRRV AE PT+AI+ V++E N
Sbjct: 15 AEQPRVTILAVGKARVKAADSTKVEFVLAKTSLAFANSLRRVIQAEVPTVAIELVEIEVN 74
Query: 56 STVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHV 115
++VL+DEFIA R+GLIPL S + VD + YSRDC C +C +CS+ TL KC D+ V
Sbjct: 75 TSVLADEFIAHRLGLIPLDSKD-VDELNYSRDCDCDHYCEQCSITLTLHAKCTTDENMKV 133
Query: 116 TTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
DL D R D + G L+ KLR+ QELRL+ AKKG KEHAK
Sbjct: 134 YARDL-IVDGRHATSIGTPVINDPDGVG----CLLAKLRRDQELRLKCVAKKGIAKEHAK 188
Query: 176 WNPTAG 181
W PT+
Sbjct: 189 WMPTSA 194
>gi|115384192|ref|XP_001208643.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Aspergillus
terreus NIH2624]
gi|114196335|gb|EAU38035.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Aspergillus
terreus NIH2624]
Length = 331
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 100/179 (55%), Gaps = 14/179 (7%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + V F++ +L+ ANSLRR +AE PT+AID V++E N++VL DEF+A
Sbjct: 13 PQVTVREAEPYRVDFKLSSVDLAFANSLRRTMLAEVPTVAIDLVEVEKNTSVLPDEFLAH 72
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL-----K 121
R+GLIPL S + Y+RDC C D C+ CSV L +C D V DL +
Sbjct: 73 RLGLIPLNSKNCDQDLEYTRDCECEDHCARCSVTLQLHARCTGDDIMRVYARDLAVAGER 132
Query: 122 STDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ D PV + E LI KLR+GQEL++ AKKG KEHAKW PTA
Sbjct: 133 ANDWVGTPVITDP---------EGKGPLICKLRRGQELKMTCIAKKGIAKEHAKWAPTA 182
>gi|146412808|ref|XP_001482375.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 305
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 105/166 (63%), Gaps = 11/166 (6%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
++V F ++D +LS+ANS+RR +AE PT+AID V+++ N++VL+DEF++ R+G+IPL S
Sbjct: 18 DHVDFILKDVDLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHRLGMIPLNS- 76
Query: 77 EVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS--TDARVVPVTSRN 134
E +D + YSRDCTC +C C V+ L KC D T V DL +++ R
Sbjct: 77 EGIDNLSYSRDCTCDQYCPNCLVKLELTAKCDSDSTMSVYATDLAKFHNGSKLGDPVVR- 135
Query: 135 RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D ++ G LI KLRK QELRL AKKG KEHAKW+P A
Sbjct: 136 ---DHHQRGP----LICKLRKHQELRLTCIAKKGIAKEHAKWSPCA 174
>gi|260950839|ref|XP_002619716.1| hypothetical protein CLUG_00875 [Clavispora lusitaniae ATCC 42720]
gi|238847288|gb|EEQ36752.1| hypothetical protein CLUG_00875 [Clavispora lusitaniae ATCC 42720]
Length = 307
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 106/174 (60%), Gaps = 7/174 (4%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I ++V F + +LSVANSLRR ++E PT+AID V+++ N++VL+DE ++
Sbjct: 10 PRVTIRQTERDHVDFILRGVDLSVANSLRRTMLSEVPTLAIDLVEIDVNTSVLADELLSH 69
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S E ++ + YSRDCTC +C CSV+ L KC D T +V ++DL
Sbjct: 70 RLGLIPLNS-EGIENLSYSRDCTCDQYCPNCSVKLELTAKCDSDSTMNVYSSDLAKFHN- 127
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S+ D + + LI KLRK QELRL AKKG KEHAKW+P A
Sbjct: 128 ----GSKLGDPVIRDPAHRGP-LICKLRKHQELRLTCIAKKGIAKEHAKWSPCA 176
>gi|212533885|ref|XP_002147099.1| RNA polymerase II subunit 3 [Talaromyces marneffei ATCC 18224]
gi|210072463|gb|EEA26552.1| RNA polymerase II subunit 3 [Talaromyces marneffei ATCC 18224]
Length = 352
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 103/175 (58%), Gaps = 5/175 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + V F++ + +L++AN+LRR IAE PT+AID V++E N++VL DEF+A
Sbjct: 12 PQVTVRETEPYRVDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVLPDEFLAH 71
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVD-DQTRHVTTADLKSTDA 125
R+GLIPL S + + Y+RDCTC +CS CSV TL +C D V + DL T
Sbjct: 72 RLGLIPLNSKHCDNDMEYNRDCTCESWCSRCSVRLTLHARCNQADDVMKVYSRDLVVTGD 131
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
R D G LI KL KGQEL+L A+KG KEHAKW+PT+
Sbjct: 132 RANEWVGNPVITDPEGKGP----LIAKLIKGQELKLTCIARKGIAKEHAKWSPTS 182
>gi|255729262|ref|XP_002549556.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240132625|gb|EER32182.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 327
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 111/180 (61%), Gaps = 18/180 (10%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I ++V F + + +LSVANS+RR +AE PT++ID V++E N++VL+DEF++
Sbjct: 9 PGVTIRTAEKDHVDFILRNVDLSVANSIRRTMLAEVPTLSIDLVEIEKNTSVLADEFLSH 68
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL---KST 123
R+GLIPL S+ + D + YSRDCTC ++C++CSV L C + T +V +DL T
Sbjct: 69 RLGLIPLVSEGIKD-LTYSRDCTCDNYCTKCSVTLQLLASCTAETTMNVYASDLLKTTHT 127
Query: 124 DARVV-PV--TSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+++ PV RNR +I KLRK QEL L AKKG KEHAKW+P A
Sbjct: 128 GSKLGDPVFRDPRNRGP-----------IICKLRKDQELALTCIAKKGIAKEHAKWSPCA 176
>gi|296412916|ref|XP_002836165.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629972|emb|CAZ80356.1| unnamed protein product [Tuber melanosporum]
Length = 340
Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 106/174 (60%), Gaps = 7/174 (4%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P + I + + + + + +L+ AN+LRR+ +AE PT+AID V+++ N++V+ DEF+
Sbjct: 14 PQITIKEADSRHAQIVLSNCDLAFANALRRIMLAEIPTIAIDIVEIQTNTSVIPDEFLCH 73
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+G++PL S + D+++Y+RDC C +C CSV +L +C + V DL
Sbjct: 74 RLGMVPLDSTNIDDKLIYTRDCFCDQYCERCSVTLSLHARCTGEDNVTVYARDL------ 127
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V+ ++ +N+ E +I KLRKGQELRL+ AKKG KEHAKW PTA
Sbjct: 128 VIAEGAQLGSPVIND-PEGQGTVICKLRKGQELRLKCIAKKGIAKEHAKWAPTA 180
>gi|399949868|gb|AFP65525.1| DNA-directed RNA polymerase II [Chroomonas mesostigmatica CCMP1168]
Length = 304
Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 110/183 (60%), Gaps = 13/183 (7%)
Query: 5 NQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFI 64
N + I +++ K +++ ++S+ NSLRRV I E PTMAID + +E NS++ DEF+
Sbjct: 2 NSSRLTIDSISNFETKISLKEIDISLINSLRRVMINEIPTMAIDLIFVEINSSIFHDEFL 61
Query: 65 ASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTD 124
A R+GLIPL S E ++ Y+R+C C FCS+CSV F+LDV D+ R V + DL +
Sbjct: 62 AHRLGLIPLFS-ESANQFRYTRECECEKFCSKCSVAFSLDV-IAKDKYRDVFSTDLIVLN 119
Query: 125 AR-------VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
+ V P+ D+ ++ + ILI KL +GQ L+L AKKG G EHAKW+
Sbjct: 120 PKESFFAKHVSPI----HDSGTADFPRLEPILISKLSQGQRLKLIGVAKKGIGLEHAKWS 175
Query: 178 PTA 180
P +
Sbjct: 176 PIS 178
>gi|242779067|ref|XP_002479367.1| RNA polymerase II subunit 3 [Talaromyces stipitatus ATCC 10500]
gi|218722986|gb|EED22404.1| RNA polymerase II subunit 3 [Talaromyces stipitatus ATCC 10500]
Length = 353
Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 103/175 (58%), Gaps = 5/175 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + V F++ + +L++AN+LRR IAE PT+AID V++E N++V+ DEF+A
Sbjct: 12 PQVTVREAEPYRVDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVIPDEFLAH 71
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVD-DQTRHVTTADLKSTDA 125
R+GLIPL S + + Y+RDCTC +CS CSV TL +C D V + DL T
Sbjct: 72 RLGLIPLNSKHCDNDMEYNRDCTCESWCSRCSVRLTLHARCNQADDVMKVYSRDLVVTGD 131
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
R D G LI KL KGQEL+L A+KG KEHAKW+PT+
Sbjct: 132 RANEWVGNPVITDPEGKGP----LIAKLIKGQELKLTCIARKGIAKEHAKWSPTS 182
>gi|50555259|ref|XP_505038.1| YALI0F05566p [Yarrowia lipolytica]
gi|49650908|emb|CAG77845.1| YALI0F05566p [Yarrowia lipolytica CLIB122]
Length = 314
Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 97/153 (63%), Gaps = 5/153 (3%)
Query: 28 LSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRD 87
+++ANSLRRV +AE PT+AID V++ N++VL+DEFI+ R+GLIPL S +V D + YSRD
Sbjct: 20 ITLANSLRRVMLAEIPTLAIDLVEISTNTSVLADEFISHRLGLIPLDSQDVND-LEYSRD 78
Query: 88 CTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDD 147
C C ++C +CSV LD C D T + + DL P + D + G
Sbjct: 79 CVCDEYCDKCSVVLMLDATCTGDDTMDIYSRDLMVHTTPERPELGKPIYTDPAKKG---- 134
Query: 148 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
ILI KLRK Q LR++ AKKG KEHAKW+P A
Sbjct: 135 ILICKLRKNQSLRIKCIAKKGIAKEHAKWSPCA 167
>gi|322701809|gb|EFY93557.1| RNA polymerase II subunit 3 [Metarhizium acridum CQMa 102]
Length = 362
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 97/162 (59%), Gaps = 6/162 (3%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
V F + T LS ANS+RR+ AE PT+AID V++E N++VL+DEFIA R+GLIPL + +
Sbjct: 38 VDFALSRTNLSFANSIRRIIQAEVPTIAIDLVEVEVNTSVLADEFIAHRLGLIPLNA-KG 96
Query: 79 VDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDAD 138
V+ + YSRDC C +C +CSV TL +C D+ V DL D R D
Sbjct: 97 VNELNYSRDCDCEQYCEQCSVTLTLHARCTSDEIMKVYARDL-IVDGRHASQVGTPVIND 155
Query: 139 MNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
G LI KLRK QEL+L AKKG KEHAKW PT+
Sbjct: 156 PEGMG----CLIAKLRKDQELKLTCIAKKGIAKEHAKWMPTS 193
>gi|322710646|gb|EFZ02220.1| RNA polymerase II subunit 3 [Metarhizium anisopliae ARSEF 23]
Length = 362
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 97/162 (59%), Gaps = 6/162 (3%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
V F + T LS ANS+RR+ AE PT+AID V++E N++VL+DEFIA R+GLIPL + +
Sbjct: 38 VDFALSRTNLSFANSIRRIIQAEVPTIAIDLVEVEVNTSVLADEFIAHRLGLIPLNA-KG 96
Query: 79 VDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDAD 138
V+ + YSRDC C +C +CSV TL +C D+ V DL D R D
Sbjct: 97 VNELNYSRDCDCEQYCEQCSVTLTLHARCTSDEIMKVYARDL-IVDGRHASQVGTPVIND 155
Query: 139 MNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
G LI KLRK QEL+L AKKG KEHAKW PT+
Sbjct: 156 PEGMG----CLIAKLRKDQELKLTCIAKKGIAKEHAKWMPTS 193
>gi|149032427|gb|EDL87318.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_c
[Rattus norvegicus]
Length = 92
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 79/86 (91%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LT+ENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSR 86
DEFIA R+GLIPLTSD++VD++ YSR
Sbjct: 61 DEFIAHRLGLIPLTSDDIVDKLQYSR 86
>gi|212533887|ref|XP_002147100.1| RNA polymerase II subunit 3 [Talaromyces marneffei ATCC 18224]
gi|210072464|gb|EEA26553.1| RNA polymerase II subunit 3 [Talaromyces marneffei ATCC 18224]
Length = 370
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 99/163 (60%), Gaps = 5/163 (3%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
V F++ + +L++AN+LRR IAE PT+AID V++E N++VL DEF+A R+GLIPL S
Sbjct: 42 VDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVLPDEFLAHRLGLIPLNSKHC 101
Query: 79 VDRILYSRDCTCVDFCSECSVEFTLDVKCVD-DQTRHVTTADLKSTDARVVPVTSRNRDA 137
+ + Y+RDCTC +CS CSV TL +C D V + DL T R
Sbjct: 102 DNDMEYNRDCTCESWCSRCSVRLTLHARCNQADDVMKVYSRDLVVTGDRANEWVGNPVIT 161
Query: 138 DMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D G LI KL KGQEL+L A+KG KEHAKW+PT+
Sbjct: 162 DPEGKGP----LIAKLIKGQELKLTCIARKGIAKEHAKWSPTS 200
>gi|396463947|ref|XP_003836584.1| hypothetical protein LEMA_P041200.1 [Leptosphaeria maculans JN3]
gi|312213137|emb|CBX93219.1| hypothetical protein LEMA_P041200.1 [Leptosphaeria maculans JN3]
Length = 336
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 102/179 (56%), Gaps = 5/179 (2%)
Query: 2 PYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSD 61
P +V ++ F V++ L ANSLRRV ++E PT+AID V++ N++VL+D
Sbjct: 5 PEGGAINVRFLQADNQRAHFIVQNFNLETANSLRRVMLSEIPTLAIDVVEVLDNTSVLAD 64
Query: 62 EFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK 121
EF+ R+GLIPL S + VD +LYSRDC C +CS CSV TL+ KC ++ V DL
Sbjct: 65 EFVCHRLGLIPLCS-KGVDDLLYSRDCDCEGYCSNCSVVLTLNAKCTGNEIMKVYARDLV 123
Query: 122 STDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
R D + G IVKLR+GQ + +R AKKG KEHAKW P+A
Sbjct: 124 VESMTPNDEVGRPVITDADGTGSC----IVKLRRGQAIHMRCIAKKGIAKEHAKWAPSA 178
>gi|209881574|ref|XP_002142225.1| DNA-directed RNA polymerase II subunit RPB3 [Cryptosporidium muris
RN66]
gi|209557831|gb|EEA07876.1| DNA-directed RNA polymerase II subunit RPB3, putative
[Cryptosporidium muris RN66]
Length = 348
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 107/177 (60%), Gaps = 8/177 (4%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P + IT+ + +KF + +T++S+AN+LRR+ +AE PT+AID V + N++VL DEFI
Sbjct: 9 PHIEITEFSPSVIKFILSNTDVSMANALRRIMLAEIPTLAIDLVTIIDNTSVLHDEFIVH 68
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST--- 123
R+GL+P+ S ++ D R C C + C++CSV++TLD+KC R+VT D+ ST
Sbjct: 69 RLGLLPIDSRQIRDFNFKDR-CGCQERCNKCSVDYTLDLKCEGPTVRNVTHLDIYSTLPV 127
Query: 124 DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+PV + D N G ILI KL GQ L R A KG GK HAKW P A
Sbjct: 128 PNIPLPVPRKEDVTDPNNEG----ILIAKLGPGQSLTARMTATKGIGKFHAKWIPVA 180
>gi|294892119|ref|XP_002773904.1| conjugation stage-specific protein, putative [Perkinsus marinus
ATCC 50983]
gi|239879108|gb|EER05720.1| conjugation stage-specific protein, putative [Perkinsus marinus
ATCC 50983]
Length = 336
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 106/182 (58%), Gaps = 10/182 (5%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P + +T LT + +KF + + ++AN+LRR+ IAE PT+AID V +E NS+ L DEF+A
Sbjct: 13 PVIEVTMLTADLIKFTIFNANQAIANALRRIMIAEVPTLAIDTVTIEENSSPLFDEFVAH 72
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA- 125
R+GL+P+ S E VD +DC C C C+V++TLDV D VT D++ D
Sbjct: 73 RLGLLPINSKE-VDSYSDPKDCQCYSSCPNCTVKYTLDVIAEDHGVTDVTHLDIQPVDQG 131
Query: 126 -------RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
R +PV +R E + I+I KLR+ Q+L + A+KG GK HAKWNP
Sbjct: 132 TSIPESRRPLPVPLWDR-TKTEEENRRNGIVIAKLRRNQQLTMHMEARKGVGKMHAKWNP 190
Query: 179 TA 180
T
Sbjct: 191 TG 192
>gi|19075824|ref|NP_588324.1| RNA polymerase II subunit 3 [Schizosaccharomyces pombe 972h-]
gi|13124820|sp|P37382.2|RPB3_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II 33 kDa polypeptide
gi|256599717|pdb|3H0G|C Chain C, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599729|pdb|3H0G|O Chain O, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|2465184|dbj|BAA22566.1| polymerase II third largest subunit (subunit 3)
[Schizosaccharomyces pombe]
gi|3790255|emb|CAA21444.1| RNA polymerase II subunit 3 [Schizosaccharomyces pombe]
Length = 297
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/180 (42%), Positives = 109/180 (60%), Gaps = 17/180 (9%)
Query: 10 HIT--DLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
HIT +++ +V F + +T L+VANSLRRV +AE PT+AID V++ N++V+ DEF+A R
Sbjct: 6 HITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHR 65
Query: 68 IGLIPLTSDEVVDR----ILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL--K 121
+G+IPL S + + + Y+R+C C +C +CSVE L+ KC + T + DL
Sbjct: 66 LGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARDLVVS 125
Query: 122 STDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
S + P+ AD G LI KLRK QE+ LR AKKG KEHAKW+PT+
Sbjct: 126 SNSSLGHPIL-----ADPKSRGP----LICKLRKEQEISLRCIAKKGIAKEHAKWSPTSA 176
>gi|299751420|ref|XP_001830255.2| DNA-directed RNA polymerase II polypeptide [Coprinopsis cinerea
okayama7#130]
gi|298409367|gb|EAU91402.2| DNA-directed RNA polymerase II polypeptide [Coprinopsis cinerea
okayama7#130]
Length = 360
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 113/195 (57%), Gaps = 30/195 (15%)
Query: 5 NQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFI 64
++P V + ++ + V F +E+ +L+ RV +A+ PT+AID V+ EAN++VL DE+I
Sbjct: 6 SEPIVRVREVKKDKVNFVLENVDLA------RVVMADIPTVAIDLVEFEANTSVLPDEYI 59
Query: 65 ASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTD 124
A R+G IPL S + I Y+RDCTC+ CS C+V+ LDV C DD T VT+ L+
Sbjct: 60 AHRLGQIPLISTNCDEAIRYTRDCTCLSQCSYCAVQLRLDVACNDDTTMEVTSNHLE--- 116
Query: 125 ARVVPVTSRNRD------------------ADMNEYGETDDILIVKLRKGQELRLRAYAK 166
VVP+ ++ NE G T +LI K+RKGQELR++ AK
Sbjct: 117 --VVPLDDYMQEEIQHGEEKAKRTQWFGHPVGKNEPG-TPPVLICKIRKGQELRVKCIAK 173
Query: 167 KGFGKEHAKWNPTAG 181
KG KEHAKW+P +
Sbjct: 174 KGIAKEHAKWSPCSA 188
>gi|261199520|ref|XP_002626161.1| RNA polymerase II subunit 3 [Ajellomyces dermatitidis SLH14081]
gi|239594369|gb|EEQ76950.1| RNA polymerase II subunit 3 [Ajellomyces dermatitidis SLH14081]
gi|239615533|gb|EEQ92520.1| RNA polymerase II subunit 3 [Ajellomyces dermatitidis ER-3]
gi|327354685|gb|EGE83542.1| RNA polymerase II subunit 3 [Ajellomyces dermatitidis ATCC 18188]
Length = 346
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 96/174 (55%), Gaps = 4/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + V F++ +L+ ANSLRR +AE PT+AID V++E+N++VL DEFIA
Sbjct: 13 PQVTVREAEPHRVDFRLSSVDLAFANSLRRTLLAEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + YSRDC C C+ C V +L +C + V DL R
Sbjct: 73 RLGLIPLNSKNCDADMYYSRDCDCEGGCARCVVTLSLQARCTGEDIMKVYARDLVVVGDR 132
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D G LI KLR+GQE+++ AKKG KEHAKW PTA
Sbjct: 133 ANEWVGNPVITDAEGKGP----LICKLRRGQEIKMTCVAKKGIAKEHAKWAPTA 182
>gi|397615411|gb|EJK63419.1| hypothetical protein THAOC_15929 [Thalassiosira oceanica]
Length = 323
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 108/198 (54%), Gaps = 20/198 (10%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MP P + I + + F + +T+ S+AN+LRR+ IAE PT+AID V+ NS+VL+
Sbjct: 1 MPQQRFPKIEIKHIAPHEITFVLSETDTSMANTLRRIMIAEVPTLAIDLVEYHENSSVLN 60
Query: 61 DEFIASRIGLIP--------LTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVK------ 106
DE+IA R+GLIP L + + R+C C D C CSVEF LDV
Sbjct: 61 DEYIAHRLGLIPIRYSPDGTLKGGDCHQAFVPHRECVCYDRCPRCSVEFDLDVNFDKVNM 120
Query: 107 CVDDQTRH----VTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 162
+Q R VT+ DL + + +V P N + N + E I IVKL +GQ LRL+
Sbjct: 121 SRPEQERDLPLTVTSRDLIANNVQVSPAHFLNEEEQDNAHDEG--ISIVKLGQGQHLRLK 178
Query: 163 AYAKKGFGKEHAKWNPTA 180
A A+ G KEHAKW P A
Sbjct: 179 AIARMGISKEHAKWCPVA 196
>gi|452003608|gb|EMD96065.1| hypothetical protein COCHEDRAFT_1088202 [Cochliobolus
heterostrophus C5]
Length = 332
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 104/184 (56%), Gaps = 15/184 (8%)
Query: 2 PYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSD 61
P Q +V ++ F V++ L AN+LRRV +AE PT+AID V++ N++VL+D
Sbjct: 5 PDGGQINVRFLQADNQRAHFIVQNFNLETANALRRVMLAEIPTLAIDVVEVFDNTSVLAD 64
Query: 62 EFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL- 120
EF+ R+GLIPL+S + VD +LYSRDC C +C CSV TL+ KC + V DL
Sbjct: 65 EFVCHRLGLIPLSS-KGVDDLLYSRDCDCEGYCDNCSVVLTLNAKCTGSEVMKVYARDLV 123
Query: 121 ----KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
D PV + + E IVKLR+GQ + ++ AKKG KEHAKW
Sbjct: 124 IESRPPNDELGRPVITDS---------EGTGSCIVKLRRGQAINMKCIAKKGIAKEHAKW 174
Query: 177 NPTA 180
P+A
Sbjct: 175 APSA 178
>gi|451855909|gb|EMD69200.1| hypothetical protein COCSADRAFT_75709 [Cochliobolus sativus ND90Pr]
Length = 332
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 104/184 (56%), Gaps = 15/184 (8%)
Query: 2 PYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSD 61
P Q +V ++ F V++ L AN+LRRV +AE PT+AID V++ N++VL+D
Sbjct: 5 PDGGQINVRFLQADNQRAHFIVQNFNLETANALRRVMLAEIPTLAIDVVEVFDNTSVLAD 64
Query: 62 EFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL- 120
EF+ R+GLIPL+S + VD +LYSRDC C +C CSV TL+ KC + V DL
Sbjct: 65 EFVCHRLGLIPLSS-KGVDDLLYSRDCDCEGYCDNCSVVLTLNAKCTGSEVMKVYARDLV 123
Query: 121 ----KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
D PV + + E IVKLR+GQ + ++ AKKG KEHAKW
Sbjct: 124 IESRPPNDELGRPVITDS---------EGTGSCIVKLRRGQAINMKCIAKKGIAKEHAKW 174
Query: 177 NPTA 180
P+A
Sbjct: 175 APSA 178
>gi|345565094|gb|EGX48049.1| hypothetical protein AOL_s00081g153 [Arthrobotrys oligospora ATCC
24927]
Length = 345
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 102/176 (57%), Gaps = 11/176 (6%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P+V I F + + +L+ ANS+RR+ +AE PT+AID V++ NS+VL DE ++
Sbjct: 14 PTVTIRKADSTRADFVLSNVDLAFANSIRRIILAEVPTLAIDLVEVINNSSVLPDELLSH 73
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GL+PL S + +++LY+RDC C +C CSV TL KC D+ V DL
Sbjct: 74 RLGLVPLESSNIDEKMLYTRDCDCDGYCERCSVVLTLVAKCTGDRNVTVYARDLAVAAGA 133
Query: 127 VV--PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ PV + D + G +I KLRKGQEL L+ AKKG KEHAKW P A
Sbjct: 134 QLGSPVIT-----DEAQKGS----IICKLRKGQELNLKCIAKKGIAKEHAKWQPCA 180
>gi|1834323|dbj|BAA09316.1| RNA polymerase II subunit 3 [Schizosaccharomyces pombe]
Length = 296
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 107/177 (60%), Gaps = 15/177 (8%)
Query: 11 ITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGL 70
I +++ +V F + +T L+VANSLRRV +AE PT+AID V++ N++V+ DEF+A R+G+
Sbjct: 9 IRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRLGM 68
Query: 71 IPLTSDEVVDR----ILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL--KSTD 124
IPL S + + + Y+R+C C +C +CSVE L+ KC + T + DL S
Sbjct: 69 IPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARDLVVSSNS 128
Query: 125 ARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
+ P+ AD G LI KLRK QE+ LR AKKG KEHAKW+PT+
Sbjct: 129 SLGHPIL-----ADPKSRGP----LICKLRKEQEISLRCIAKKGIAKEHAKWSPTSA 176
>gi|237834427|ref|XP_002366511.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii ME49]
gi|211964175|gb|EEA99370.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii ME49]
gi|221501508|gb|EEE27282.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii VEG]
Length = 484
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 112/188 (59%), Gaps = 14/188 (7%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
A +PS+ + +++ VKF +E+ ++S+AN LRRV I+E P++AID V + N++VL DE+
Sbjct: 148 AYEPSIVVKEVSQNKVKFLLENCDVSIANGLRRVMISEVPSLAIDLVTVYENTSVLHDEY 207
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
I+ R+GL+P+ S V + + DC C D CS CSV++ LDV C D + VT D+ +
Sbjct: 208 ISHRLGLLPIDSTRVAE-FVNRDDCDCADHCSRCSVQYALDVVCERD-SLLVTHRDIVAD 265
Query: 124 DARVVPVTSRN-----------RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKE 172
+AR + S +M E E D I IVKLRK Q + +R A KG GK
Sbjct: 266 NARGASLASAGFLDLGCPMPVPLLREMQEK-EMDGIPIVKLRKNQSVNMRMTATKGIGKV 324
Query: 173 HAKWNPTA 180
HAKW+P A
Sbjct: 325 HAKWSPVA 332
>gi|221486200|gb|EEE24470.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii GT1]
Length = 484
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 112/188 (59%), Gaps = 14/188 (7%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
A +PS+ + +++ VKF +E+ ++S+AN LRRV I+E P++AID V + N++VL DE+
Sbjct: 148 AYEPSIVVKEVSQNKVKFLLENCDVSIANGLRRVMISEVPSLAIDLVTVYENTSVLHDEY 207
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
I+ R+GL+P+ S V + + DC C D CS CSV++ LDV C D + VT D+ +
Sbjct: 208 ISHRLGLLPIDSTRVAE-FVNRDDCDCADHCSRCSVQYALDVVCERD-SLLVTHRDIVAD 265
Query: 124 DARVVPVTSRN-----------RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKE 172
+AR + S +M E E D I IVKLRK Q + +R A KG GK
Sbjct: 266 NARGASLASAGFLDLGCPMPVPLLREMQEK-EMDGIPIVKLRKNQSVNMRMTATKGIGKV 324
Query: 173 HAKWNPTA 180
HAKW+P A
Sbjct: 325 HAKWSPVA 332
>gi|308800116|ref|XP_003074839.1| Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) [Ostreococcus
tauri]
gi|119358805|emb|CAL52099.2| Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) [Ostreococcus
tauri]
Length = 301
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 112/172 (65%), Gaps = 5/172 (2%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V +T L D+++ F ++ ++S+AN+LRRV IA+ PT+AID V++ NS+VL DEF+A R+
Sbjct: 11 VSVTRLEDQSITFSLKGVDVSLANALRRVMIADVPTLAIDLVEVVENSSVLCDEFLAHRL 70
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIPL+S +V + L+ + S V L+V+C+ +Q VT+ D+ S D RV
Sbjct: 71 GLIPLSSKKVSE--LFKPYEYMGEDDSATDVHLELNVRCLTEQAMDVTSEDMVSYDERVK 128
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
P+T + +D + G ILIVKLR Q+L L+ A+KG GK+HAKW+P A
Sbjct: 129 PITFQGTVSDAAKPG---GILIVKLRNKQQLLLKCIARKGTGKDHAKWSPVA 177
>gi|160331749|ref|XP_001712581.1| rpb3 [Hemiselmis andersenii]
gi|159766030|gb|ABW98256.1| rpb3 [Hemiselmis andersenii]
Length = 307
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 108/177 (61%), Gaps = 5/177 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
PS+ I +L++ K +++T +S+ NSLRRV I E PT AID + +E NS+V+ DEF++
Sbjct: 4 PSLEILNLSNYESKIILKETNISILNSLRRVMINEVPTFAIDLLFIEINSSVMHDEFLSH 63
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GL+PL S+ Y+R+C C +CS+CS +F+LD+ + + + + DL + D +
Sbjct: 64 RLGLLPLFSN-FAHEFRYTRECDCEQYCSKCSFKFSLDI-YAEKFPQSIFSTDLNTIDKK 121
Query: 127 VVPVTSRNRDADMNEYGETDD---ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ + ET D ILI KL GQ ++L A AKKG GKEHAKW+P +
Sbjct: 122 ENFFYQQINPIHYSSLKETLDQKPILIGKLGIGQRIKLVAIAKKGIGKEHAKWSPIS 178
>gi|169608898|ref|XP_001797868.1| hypothetical protein SNOG_07533 [Phaeosphaeria nodorum SN15]
gi|111063879|gb|EAT84999.1| hypothetical protein SNOG_07533 [Phaeosphaeria nodorum SN15]
Length = 335
Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
Query: 2 PYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSD 61
P +V + + F V++ L ANSLRRV +AE PT+AID V++ N++VL+D
Sbjct: 5 PEGGAINVRFLEANSQRANFIVQNFNLETANSLRRVMLAEIPTLAIDVVEVLDNTSVLAD 64
Query: 62 EFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK 121
EF+ R+GLIPL+S VD +LY+RDC C +C C+V +L+ KC + V DL
Sbjct: 65 EFVCHRLGLIPLSS-RGVDDLLYARDCDCEGYCDNCAVVLSLNAKCTGSEIMKVFARDLV 123
Query: 122 STDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
R R D G IVKLR+GQ + +R AKKG KEHAKW P+A
Sbjct: 124 IESNRPNDEVGRPVITDSEGTGSC----IVKLRRGQAINMRCIAKKGIAKEHAKWAPSA 178
>gi|409044983|gb|EKM54464.1| hypothetical protein PHACADRAFT_258319 [Phanerochaete carnosa
HHB-10118-sp]
Length = 399
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 110/181 (60%), Gaps = 10/181 (5%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
SV I DL + V F +E+ ++++ANS RR+ +A+ PT+AID V++++N++VL DEFI+ R
Sbjct: 8 SVRIRDLKKDRVNFVLENVDMALANSFRRIMMADIPTVAIDIVEIDSNTSVLPDEFISHR 67
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKC------VDDQTRHVTTADLK 121
+G+IPL S + + Y+R+CTC FC C+V L+++C +D + H+ +L
Sbjct: 68 LGMIPLVSTNCDEAMRYTRECTCESFCQFCAVVLQLNIRCETAGEHLDVTSNHLEFVNLS 127
Query: 122 STDARVVPVTSRNRDADMNEYGETD----DILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
+ S+ + G+ D +LI ++ KGQE+R R AKKG KEHAKW+
Sbjct: 128 NNYDDPGEEISKRPENFGYPVGKNDPNVPPVLIARIGKGQEIRARCIAKKGIAKEHAKWS 187
Query: 178 P 178
P
Sbjct: 188 P 188
>gi|452987978|gb|EME87733.1| hypothetical protein MYCFIDRAFT_129897 [Pseudocercospora fijiensis
CIRAD86]
Length = 342
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 106/177 (59%), Gaps = 18/177 (10%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
+KF++ +T L+ ANSLRRV +AE PT+AID V++E N++VL+DEF+A R+GLIPL++ +
Sbjct: 9 IKFRLSNTSLAFANSLRRVMLAEVPTIAIDLVEIENNTSVLADEFLAHRLGLIPLST-KG 67
Query: 79 VDRILYSRDCTCVDFCSECSVEFTLD-VKCVDDQTRHVTTADLKSTDA------------ 125
VD ++ RDCTC ++C CSV L+ V DQ V DL A
Sbjct: 68 VDEMIDFRDCTCDEYCDNCSVVLRLNAVNRSSDQNLKVFARDLFVESAAPGGYNRTNGVN 127
Query: 126 --RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V + R M+ G LI +LR+GQELR++ AKKG KEHAKW PTA
Sbjct: 128 GNSVDELPPRGHPIIMDPAGHGP--LICQLRRGQELRIKCVAKKGIAKEHAKWAPTA 182
>gi|339251862|ref|XP_003371154.1| putative biotin--protein ligase [Trichinella spiralis]
gi|316968644|gb|EFV52901.1| putative biotin--protein ligase [Trichinella spiralis]
Length = 798
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 83/136 (61%), Gaps = 23/136 (16%)
Query: 46 AIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDV 105
+ID V + +N++V DEFIA RIGLIPLTSD VV+R+ YSRDC C+ C+EC++ +D
Sbjct: 38 SIDTVTIHSNTSVFCDEFIAHRIGLIPLTSDNVVERLRYSRDCPCMGGCNECAIHLNIDK 97
Query: 106 KCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYA 165
KC T+ADLKS D+RVVP LR GQEL + A
Sbjct: 98 KCFTHNGDFATSADLKSQDSRVVP-----------------------LRDGQELIVTCVA 134
Query: 166 KKGFGKEHAKWNPTAG 181
+KG GKEHAKWNPTAG
Sbjct: 135 RKGIGKEHAKWNPTAG 150
>gi|145342475|ref|XP_001416207.1| DNA-directed RNA polymerase II subunit 3 [Ostreococcus lucimarinus
CCE9901]
gi|144576432|gb|ABO94500.1| DNA-directed RNA polymerase II subunit 3 [Ostreococcus lucimarinus
CCE9901]
Length = 318
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 109/177 (61%), Gaps = 13/177 (7%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
SV + L DE + F ++ ++S+AN+LRR+ IA+ PT++ID V++ NS+VL DEF+A R
Sbjct: 10 SVTVARLEDETIIFDLKGVDVSLANALRRLMIADVPTVSIDLVEVIENSSVLCDEFLAHR 69
Query: 68 IGLIPLTS---DEVVDRILYSR-DCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
+GLIPL S E+V Y+ D T D V L+V+C DQTR VT+ DL S
Sbjct: 70 LGLIPLDSTKASELVKPYEYTGDDDTATD------VHLELNVRCQSDQTRDVTSDDLISH 123
Query: 124 DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D RV PV+ + G ILI KLRK Q+L L+ A+KG GK+HAKW+P A
Sbjct: 124 DERVKPVSFGGTGGGSAKSG---GILIAKLRKNQQLSLKCIARKGTGKDHAKWSPVA 177
>gi|330947784|ref|XP_003306966.1| hypothetical protein PTT_20284 [Pyrenophora teres f. teres 0-1]
gi|311315237|gb|EFQ84939.1| hypothetical protein PTT_20284 [Pyrenophora teres f. teres 0-1]
Length = 334
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 111/183 (60%), Gaps = 13/183 (7%)
Query: 2 PYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSD 61
P + +V + + + F V++ L ANSLRRV ++E PT+AID V++ N++VL+D
Sbjct: 5 PEGDSINVRFLEASSQRASFIVQNFNLETANSLRRVMLSEIPTLAIDVVEVLDNTSVLAD 64
Query: 62 EFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK 121
EF+ R+GLIPL+S + VD ++YSRDC C +C C+V +L+ KC T +++
Sbjct: 65 EFVCHRLGLIPLSS-KGVDDLVYSRDCDCEGYCDNCAVVLSLNAKC--------TGSEIM 115
Query: 122 STDARVVPVTSRNRDADMNEYGETD----DILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
AR + + SR + ++ + TD IVKLR+GQ + +R AKKG KEHAKW
Sbjct: 116 KVYARDLVIESRTPNDEVGKPVITDSEGTGSCIVKLRRGQAINMRCIAKKGIAKEHAKWA 175
Query: 178 PTA 180
P+A
Sbjct: 176 PSA 178
>gi|401404694|ref|XP_003881797.1| hypothetical protein NCLIV_015560 [Neospora caninum Liverpool]
gi|325116211|emb|CBZ51764.1| hypothetical protein NCLIV_015560 [Neospora caninum Liverpool]
Length = 514
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 113/189 (59%), Gaps = 14/189 (7%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
A +PS+ + +++ V+F +E+ ++S+AN+LRRV IAE PT+AID V + N++VL DE+
Sbjct: 159 AYEPSIVVKEVSPSKVQFLLENCDVSIANALRRVMIAEVPTLAIDLVTVYENTSVLHDEY 218
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
I+ R+GL+P+ S V + + DC C D C CSV++ LDV C +D + VT D+ +
Sbjct: 219 ISHRLGLLPIDSTRVAE-FVNREDCDCADHCPRCSVQYALDVVCQND-SLLVTHRDIVAD 276
Query: 124 DA-RVVPVTSRNRDADMN-----------EYGETDDILIVKLRKGQELRLRAYAKKGFGK 171
+A R + D++ + E D I IVKLR+ Q + +R A KG GK
Sbjct: 277 NAGRGTALAPGGGFLDLSCPMPVPLPREMQQKEMDGIPIVKLRRNQSVNMRMTAIKGMGK 336
Query: 172 EHAKWNPTA 180
HAKW+P A
Sbjct: 337 LHAKWSPVA 345
>gi|189199142|ref|XP_001935908.1| DNA-directed RNA polymerase subunit D [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187983007|gb|EDU48495.1| DNA-directed RNA polymerase subunit D [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 334
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 110/183 (60%), Gaps = 13/183 (7%)
Query: 2 PYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSD 61
P + +V + + F V++ L ANSLRRV ++E PT+AID V++ N++VL+D
Sbjct: 5 PEGDSINVRFLEANSQRASFIVQNFNLETANSLRRVMLSEIPTLAIDVVEVLDNTSVLAD 64
Query: 62 EFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK 121
EF+ R+GL+PL+S + VD ++YSRDC C +C C+V +L+ KC T +++
Sbjct: 65 EFVCHRLGLVPLSS-KGVDDLIYSRDCDCEGYCDNCAVVLSLNAKC--------TGSEIM 115
Query: 122 STDARVVPVTSRNRDADMNEYGETD----DILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
AR + + SR + ++ + TD IVKLR+GQ + +R AKKG KEHAKW
Sbjct: 116 KVYARDLVIESRTPNDEVGKPVITDSEGTGSCIVKLRRGQAINMRCIAKKGIAKEHAKWA 175
Query: 178 PTA 180
P+A
Sbjct: 176 PSA 178
>gi|452846630|gb|EME48562.1| hypothetical protein DOTSEDRAFT_162154 [Dothistroma septosporum
NZE10]
Length = 364
Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 108/187 (57%), Gaps = 15/187 (8%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I +KF + +T L+ ANS+RRV +AE PT+AID V++E N++VL+DEF+A
Sbjct: 17 PKVTIRSADATTIKFNLTNTSLAFANSIRRVMLAEIPTIAIDLVEIENNTSVLADEFLAH 76
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVD-DQTRHVTTADL----- 120
R+GL+PL++ + VD ++ RDCTC D+C CSV L+V + DQ V DL
Sbjct: 77 RLGLVPLST-KGVDDMVDGRDCTCDDYCDNCSVVLRLNVANRNSDQNLKVFARDLFVESQ 135
Query: 121 KSTDARVVPVTSRNRDADMNEYGET-------DDILIVKLRKGQELRLRAYAKKGFGKEH 173
R + D D+ G L+ +LR+GQEL+L+ AK+G KEH
Sbjct: 136 AGYGGRGNGANGSSSD-DLPPRGSPILSDPAQQGPLLCQLRRGQELKLKCVAKRGIAKEH 194
Query: 174 AKWNPTA 180
AKW PTA
Sbjct: 195 AKWAPTA 201
>gi|1834322|dbj|BAA09315.1| RNA polymerase II subunit 3 [Schizosaccharomyces pombe]
Length = 296
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 109/180 (60%), Gaps = 17/180 (9%)
Query: 10 HIT--DLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
HIT +++ ++V F + ++ L+VANSLRRV +AE PT+AID V++ N++V+ DEF+A R
Sbjct: 6 HITIRNISRDSVDFVLTNSSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHR 65
Query: 68 IGLIPLTSDEVVDR----ILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL--K 121
+ +IPL S + + + Y+R+C C +C +CSVE L+ KC + T + DL
Sbjct: 66 LDMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARDLVVS 125
Query: 122 STDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
S + P+ AD G LI KLRK QE+ LR AKKG KEHAKW+PT+
Sbjct: 126 SNSSLGHPIL-----ADPKSRGP----LICKLRKEQEISLRCIAKKGIAKEHAKWSPTSA 176
>gi|328853564|gb|EGG02702.1| hypothetical protein MELLADRAFT_72730 [Melampsora larici-populina
98AG31]
Length = 359
Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 109/182 (59%), Gaps = 22/182 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V +T+L + + F VE +L++ANSLRR +A+ T+AI V+ E N++VL DE IA R+
Sbjct: 21 VKVTELDERHAAFVVEGVDLALANSLRRTIMADLTTVAIHSVEFEENTSVLPDEMIAHRL 80
Query: 69 GLIPLTSDEVVDRIL--YSRDCTCVDFCSECSVEFTLDVKC-VDDQTRHVTTADLKSTDA 125
GL+PL S++ +D+ L + RDCTC+ FC +CS+E L VK + +T VT+ DL
Sbjct: 81 GLMPLMSED-LDKYLKNWQRDCTCLSFCDDCSIELVLSVKSTLPGETLEVTSKDLV---- 135
Query: 126 RVVPVTSRNRDADMNEY----------GETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
+T R D + GE +LI KLRKGQE++L+ A KG +EHAK
Sbjct: 136 ----ITPREDGGDRGDVGKPVQFTLPNGEQPGVLITKLRKGQEVKLKCRAIKGIAQEHAK 191
Query: 176 WN 177
W+
Sbjct: 192 WS 193
>gi|402224256|gb|EJU04319.1| RBP11-like subunit of RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 401
Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 112/191 (58%), Gaps = 17/191 (8%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P++ I +L + V+F + +LS ANS RRV +A+ T+AID V++E N+TVL DEF++
Sbjct: 4 PAIRIRELAKDRVEFVMTGVDLSFANSFRRVIMADVATVAIDMVEIEVNTTVLVDEFLSH 63
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQ----TRHVTTA---- 118
RIG+IPLTS + + Y RDC C+ C C++ + +DV+C + + + H+T
Sbjct: 64 RIGMIPLTSTNCEEGMRYKRDCPCLGICRYCAIVYDIDVRCTEGEMNVTSDHLTMVPPDQ 123
Query: 119 -DLKSTDARVVP--VTSRNRDADMNEYGETD------DILIVKLRKGQELRLRAYAKKGF 169
D + D+ ++ R ++ + TD I +V++RKGQ L+ R A+KG
Sbjct: 124 WDHEEQDSSAAEDILSKRGKNFGVPAGPATDPDPNRRPISLVRMRKGQALKARCVARKGI 183
Query: 170 GKEHAKWNPTA 180
KEHAKW+P A
Sbjct: 184 AKEHAKWSPCA 194
>gi|323454964|gb|EGB10833.1| hypothetical protein AURANDRAFT_22116 [Aureococcus anophagefferens]
Length = 324
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 105/187 (56%), Gaps = 18/187 (9%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + DL + + F+V DT+ S ANSLRRV + E +MAID V E N++V++DE IA
Sbjct: 14 PQVSVRDLEENTMCFEVRDTDCSTANSLRRVMVGEVVSMAIDLVTFEENTSVVNDEIIAH 73
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRH-----------V 115
R+GL+P+ ++ R ++RDC C C C+ L V DD+ + V
Sbjct: 74 RLGLVPINDRDIRRRFRHTRDCDCDSHCDFCAATLKLHVS-FDDRAKDLPEHEKNNPLTV 132
Query: 116 TTADLKSTDARVVPV--TSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEH 173
TT DL S D V PV S+ ++ E G I +VKL KGQEL+L AK G GKEH
Sbjct: 133 TTLDLVSDDPDVAPVHFVSKREESTSQETG----IALVKLAKGQELKLTCIAKLGCGKEH 188
Query: 174 AKWNPTA 180
AKW P +
Sbjct: 189 AKWIPVS 195
>gi|443917515|gb|ELU38215.1| DNA-directed RNA polymerase II polypeptide [Rhizoctonia solani AG-1
IA]
Length = 381
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 106/195 (54%), Gaps = 32/195 (16%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P + I D+ ++V F +E EL+ ANSLRRV +A+ PT+AID V++E+N+TVL DEF+A
Sbjct: 9 PLLTIRDIKKQSVNFVLEGVELAFANSLRRVCMADLPTIAIDLVEIESNTTVLPDEFLAH 68
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+G++PL S DCTC+ C CSVE L+V + D+ S +
Sbjct: 69 RLGMVPLVSTNC------DEDCTCISRCKYCSVELYLNVSSTNQPV------DITSNNLD 116
Query: 127 VVPVTS---------------RNRDADMNEYGETDD-----ILIVKLRKGQELRLRAYAK 166
VVP + R + DD +L+ ++RKGQELRLR AK
Sbjct: 117 VVPSGGGEFGGEDEGEEGDELQKRPPNFGTPIGKDDPNVPPVLLCRIRKGQELRLRCIAK 176
Query: 167 KGFGKEHAKWNPTAG 181
KG KEHAKW+P G
Sbjct: 177 KGTAKEHAKWSPCTG 191
>gi|225557550|gb|EEH05836.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces capsulatus
G186AR]
Length = 475
Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 95/174 (54%), Gaps = 4/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + V F++ +L+ ANSLRR +AE PT+AID V++E+N++VL DEFI+
Sbjct: 13 PQVTVREAEPHRVDFRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISH 72
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + YSRDC C C+ C V L +C + V DL R
Sbjct: 73 RLGLIPLNSKNCDADMEYSRDCDCEGGCARCVVTLQLQARCTGEDIMKVYARDLVVVGDR 132
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D G +I KLR+GQE+++ AKKG KEHAKW PTA
Sbjct: 133 ANEWVGNPVIMDAEGKGP----VICKLRRGQEIKMTCIAKKGIAKEHAKWAPTA 182
>gi|225684781|gb|EEH23065.1| DNA-directed RNA polymerase II subunit RPB3 [Paracoccidioides
brasiliensis Pb03]
Length = 283
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 97/175 (55%), Gaps = 4/175 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + V F++ +L+ ANSLRR +AE PT+AID V++E+N++VL DEF+A
Sbjct: 14 PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + YSRDC C C+ C V +L+V+C + V DL R
Sbjct: 74 RLGLIPLNSKNCDADMDYSRDCDCEGGCARCVVMLSLNVRCTGEDVMKVYARDLIIVGDR 133
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
D G +I KL +GQEL++ AKKG KEH+KW PTA
Sbjct: 134 ANEWVGSPVITDAEGKGP----VICKLSRGQELKMTCIAKKGIAKEHSKWAPTAA 184
>gi|226286652|gb|EEH42165.1| DNA-directed RNA polymerase II subunit RPB3 [Paracoccidioides
brasiliensis Pb18]
Length = 352
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 97/174 (55%), Gaps = 4/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + V F++ +L+ ANSLRR +AE PT+AID V++E+N++VL DEF+A
Sbjct: 14 PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + YSRDC C C+ C V +L+V+C + V DL R
Sbjct: 74 RLGLIPLNSKNCDADMDYSRDCDCEGGCARCVVMLSLNVRCTGEDVMKVYARDLIIVGDR 133
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D G +I KL +GQEL++ AKKG KEH+KW PTA
Sbjct: 134 ANEWVGSPVITDAEGKGP----VICKLSRGQELKMTCIAKKGIAKEHSKWAPTA 183
>gi|325096255|gb|EGC49565.1| DNA-directed RNA polymerase II [Ajellomyces capsulatus H88]
Length = 475
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 95/174 (54%), Gaps = 4/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + V F++ +L+ ANSLRR +AE PT+AID V++E+N++VL DEFI+
Sbjct: 13 PQVTVREAEPHRVDFRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISH 72
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + YSRDC C C+ C V L +C + V DL R
Sbjct: 73 RLGLIPLNSKNCDADMEYSRDCDCEGGCARCVVTLQLQARCTGEDIMKVYARDLVIVGDR 132
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D G +I KLR+GQE+++ AKKG KEHAKW PTA
Sbjct: 133 ANEWVGNPVIMDAEGKGP----VICKLRRGQEIKMTCIAKKGIAKEHAKWAPTA 182
>gi|402076627|gb|EJT72050.1| DNA-directed RNA polymerase II subunit RPB3 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 340
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 100/164 (60%), Gaps = 8/164 (4%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
V F++ + +LS+AN++RRV +AE PT+AID +++ N++VL+DEFIA R+GL+PL + V
Sbjct: 27 VNFELSNVDLSLANAVRRVMLAEIPTIAIDNCEIKENTSVLADEFIAHRLGLVPLDARGV 86
Query: 79 VDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVT---TADLKSTDARVVPVTSRNR 135
D + YSRDC C +C CSV ++ +C D HV+ DL +
Sbjct: 87 AD-LNYSRDCDCEQYCDNCSVTIEINARCEVDDPGHVSKFYAKDLWVVGNPPNKYVGKPV 145
Query: 136 DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
D +E G I++ KLR GQE+R+R AKKG KEHAKW P
Sbjct: 146 ITDPDENG----IILFKLRYGQEIRIRCIAKKGIAKEHAKWCPA 185
>gi|162606468|ref|XP_001713264.1| DNA-directed RNA polymerase II [Guillardia theta]
gi|12580730|emb|CAC27048.1| DNA-directed RNA polymerase II [Guillardia theta]
Length = 299
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 103/178 (57%), Gaps = 11/178 (6%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ + ++D +K + + ANS+RR+ + E PT+AID V +E N++ DEFIA R+
Sbjct: 1 MKVEKISDFEIKINFNNFPIVYANSIRRIMMNEIPTLAIDKVYIEKNTSSFKDEFIAHRL 60
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ S E D I YSR+C C + C +CS+ FTLDV ++T T+ +
Sbjct: 61 GLIPIFS-ENADLIKYSRECDCENECEKCSILFTLDVHA--NETEKTITSSMVKCSTACY 117
Query: 129 PVTSR---NRDADMNEYGETDD--ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
P+ + N + Y DD I+I KL GQ ++L+AY KKG GKEH+KWNP +
Sbjct: 118 PLKTFFIINNSGNSRNY---DDYAIIIAKLNPGQNIKLKAYVKKGIGKEHSKWNPISS 172
>gi|295662885|ref|XP_002791996.1| DNA-directed RNA polymerase II subunit RPB3 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226279648|gb|EEH35214.1| DNA-directed RNA polymerase II subunit RPB3 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 352
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 97/174 (55%), Gaps = 4/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + V F++ +L+ ANSLRR +AE PT+AID V++E+N++VL DEF+A
Sbjct: 14 PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + YSRDC C C+ C V +L+V+C + V DL R
Sbjct: 74 RLGLIPLNSKNCDADMDYSRDCDCEGGCARCIVMLSLNVRCTGEDVMKVYARDLIIVGDR 133
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D G +I KL +GQEL++ AKKG KEH+KW PTA
Sbjct: 134 ANEWVGSPVITDAEGKGP----VICKLSRGQELKMTCIAKKGIAKEHSKWAPTA 183
>gi|84999910|ref|XP_954676.1| DNA-directed RNA polymerase ii [Theileria annulata]
gi|65305671|emb|CAI73996.1| DNA-directed RNA polymerase ii, putative [Theileria annulata]
Length = 354
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 110/181 (60%), Gaps = 7/181 (3%)
Query: 2 PYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSD 61
P +PS+ + DL + + F + ++++S AN++RRV ++E P++AI+ V + N++VL D
Sbjct: 5 PRQIKPSIEVVDLRKDRMDFILLNSDVSTANAIRRVILSEIPSLAIEIVTVLENTSVLHD 64
Query: 62 EFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK 121
E+I+ R+GL+P+ S + + C C D C++C+V++TLDV C D +R VT D+
Sbjct: 65 EYISHRLGLLPIDS-TLASEFEFRDRCQCTDKCAKCTVDYTLDVSCNDSNSRLVTHFDIV 123
Query: 122 STDARVVPVTSRNRD-----ADMNEY-GETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
D + +N AD+ + G TD I IVKL++GQ + ++ A KG GK HAK
Sbjct: 124 PDDTHSKSIYGKNLPMPIPRADVTNFNGATDGIPIVKLKRGQSINMKLTASKGLGKFHAK 183
Query: 176 W 176
W
Sbjct: 184 W 184
>gi|327303580|ref|XP_003236482.1| RNA polymerase II subunit 3 [Trichophyton rubrum CBS 118892]
gi|326461824|gb|EGD87277.1| RNA polymerase II subunit 3 [Trichophyton rubrum CBS 118892]
Length = 351
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 94/174 (54%), Gaps = 4/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + V F++ +L+ ANS RR +AE PT+AID V++E N++VL DEFI+
Sbjct: 13 PQVTVREAEPYRVDFRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISH 72
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S +LYSRDC C C+ C + +L KC ++ V DL R
Sbjct: 73 RLGLIPLCSKNCDTDMLYSRDCDCEAGCARCVINLSLHAKCTTEEIMKVYARDLVVVGDR 132
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D G +I KLR+GQE++ KKG KEHAKW PTA
Sbjct: 133 ANEWVGNPVVTDPEGKGP----IICKLRRGQEVKFNCIVKKGIAKEHAKWAPTA 182
>gi|302654573|ref|XP_003019090.1| hypothetical protein TRV_06869 [Trichophyton verrucosum HKI 0517]
gi|291182788|gb|EFE38445.1| hypothetical protein TRV_06869 [Trichophyton verrucosum HKI 0517]
Length = 351
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 94/174 (54%), Gaps = 4/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + V F++ +L+ ANS RR +AE PT+AID V++E N++VL DEFI+
Sbjct: 13 PQVTVREAEPYRVDFRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISH 72
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S +LYSRDC C C+ C + +L KC ++ V DL R
Sbjct: 73 RLGLIPLCSKNCDTDMLYSRDCDCEAGCARCVINLSLHAKCTTEEIMKVYARDLVVVGDR 132
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D G +I KLR+GQE++ KKG KEHAKW PTA
Sbjct: 133 ANEWVGNPVVTDPEGKGP----IICKLRRGQEVKFNCIVKKGIAKEHAKWAPTA 182
>gi|378732910|gb|EHY59369.1| DNA-directed RNA polymerase II subunit C [Exophiala dermatitidis
NIH/UT8656]
Length = 335
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 99/175 (56%), Gaps = 6/175 (3%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + ++ + F ++ L++ANSLRR +AE PT+AID V + NS+VL DE++A
Sbjct: 22 PKVTVREVEQDRCDFVLQSCSLALANSLRRAILAEIPTIAIDLVDIITNSSVLPDEYLAH 81
Query: 67 RIGLIPLTSDEVVDRILYSRDC-TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+ LIPL S V + + Y+RDC C D C CSV L +C T V DL D
Sbjct: 82 RLALIPLASKGVGENLNYTRDCDRCDDHCEYCSVVLRLHARCTRPGTMMVYARDLTVADP 141
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
R + + D+N G LI KLR+GQE+ L AKKG KEHAKW PTA
Sbjct: 142 RQDGI-GQPVIRDVNGTGP----LIAKLRQGQEIHLECIAKKGIAKEHAKWAPTA 191
>gi|425774142|gb|EKV12459.1| RNA polymerase II subunit 3 [Penicillium digitatum PHI26]
gi|425778395|gb|EKV16523.1| RNA polymerase II subunit 3 [Penicillium digitatum Pd1]
Length = 335
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 100/179 (55%), Gaps = 15/179 (8%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + V F++ +L+ ANSLRR +AE PT+A+D +++E+N++VL DEF+A
Sbjct: 12 PQVTVREAEPYRVDFRLTAVDLAFANSLRRTILAEVPTLALDLIEIESNTSVLPDEFLAH 71
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+G+IPL S + Y+RDC C D C CSV +L +C V DL R
Sbjct: 72 RLGMIPLNSYNCDQDLDYTRDCDCEDHCVRCSVTLSLHARC-GSGIMSVYARDLIVVGER 130
Query: 127 VV-----PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ PVT+ E LI KLRKGQE+++ AKKG KEHAKW PTA
Sbjct: 131 INDKIGDPVTTDP---------ENKGPLICKLRKGQEIKMTCLAKKGTAKEHAKWAPTA 180
>gi|393246178|gb|EJD53687.1| insert subdomain of RNA polymerase alpha subunit [Auricularia
delicata TFB-10046 SS5]
Length = 380
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 112/194 (57%), Gaps = 24/194 (12%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P+V I DL + VKF +E+ +L+ ANSLRRV +A+ PT+AID V++E+N+ VL DE +A
Sbjct: 5 PNVKIEDLRRDRVKFTLENVDLAFANSLRRVMMADLPTVAIDMVEIESNTGVLVDELLAH 64
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+G+IPL S + + Y+RDC C+ CS C+V+ L V C D T D+ S
Sbjct: 65 RLGMIPLVSTNCDEAMRYTRDCNCLSSCSSCAVQLELKVSCNTDN----RTLDVTSNHLE 120
Query: 127 VVPVTSR-NRDADMNEYGE-------------------TDDILIVKLRKGQELRLRAYAK 166
VVP+ S N D GE +LI KLRKGQEL+LR AK
Sbjct: 121 VVPMDSYDNFDMGGPATGEELSRRVENFGHPVGKHDPSVAPVLIAKLRKGQELKLRCIAK 180
Query: 167 KGFGKEHAKWNPTA 180
KG KEHAKW+P A
Sbjct: 181 KGVAKEHAKWSPCA 194
>gi|255932027|ref|XP_002557570.1| Pc12g07350 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582189|emb|CAP80362.1| Pc12g07350 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 335
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 100/179 (55%), Gaps = 15/179 (8%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + V F++ +L+ ANSLRR +AE PT+A+D +++E+N++VL DEF+A
Sbjct: 12 PQVTVREAEPYRVDFRLTAVDLAFANSLRRTILAEVPTLALDLIEIESNTSVLPDEFLAH 71
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+G+IPL S + Y+RDC C D C CSV +L +C V DL R
Sbjct: 72 RLGMIPLNSYNCDQDLDYTRDCDCEDHCVRCSVTLSLHARC-GSGIMSVYARDLIVVGER 130
Query: 127 VV-----PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ PVT+ E LI KLRKGQE+++ AKKG KEHAKW PTA
Sbjct: 131 INDKIGDPVTTDP---------ENKGPLICKLRKGQEVKMTCLAKKGTAKEHAKWAPTA 180
>gi|326469671|gb|EGD93680.1| RNA polymerase II subunit 3 [Trichophyton tonsurans CBS 112818]
gi|326478798|gb|EGE02808.1| RNA polymerase II subunit 3 [Trichophyton equinum CBS 127.97]
Length = 351
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 93/174 (53%), Gaps = 4/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + V F++ +L+ ANS RR +AE PT+AID V++E N++VL DEFI+
Sbjct: 13 PQVTVREAEPYRVDFRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISH 72
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S +LYSRDC C C+ C + +L KC + V DL R
Sbjct: 73 RLGLIPLCSKNCDTDMLYSRDCDCEAGCARCVINLSLHAKCTTEDIMKVYARDLVVVGDR 132
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D G +I KLR+GQE++ KKG KEHAKW PTA
Sbjct: 133 ANEWVGNPVVTDPEGKGP----IICKLRRGQEVKFNCIVKKGIAKEHAKWAPTA 182
>gi|71031829|ref|XP_765556.1| DNA-directed RNA polymerase II [Theileria parva strain Muguga]
gi|68352513|gb|EAN33273.1| DNA-directed RNA polymerase II, putative [Theileria parva]
Length = 354
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 109/181 (60%), Gaps = 7/181 (3%)
Query: 2 PYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSD 61
P +PS+ I DL + + F + ++++S AN++RRV ++E P++AI+ V + N++VL D
Sbjct: 5 PRQIKPSIEIVDLRKDRMDFILLNSDVSTANAIRRVILSEIPSLAIEIVTVLENTSVLHD 64
Query: 62 EFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK 121
E+I+ R+GL+P+ S + + C C D C++C+V++TLDV C D +R VT D+
Sbjct: 65 EYISHRLGLLPIDS-TLASEFEFRDRCQCTDKCAKCTVDYTLDVSCKDSDSRVVTHFDIV 123
Query: 122 STDARVVPVTSRNRD-----ADMNEY-GETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
D + +N AD+ + G TD I IVKL++G + ++ A KG GK HAK
Sbjct: 124 PDDTHSKSIYGKNLPMPIPRADVTNFNGATDGIPIVKLKRGHSINMKLTASKGLGKFHAK 183
Query: 176 W 176
W
Sbjct: 184 W 184
>gi|302509162|ref|XP_003016541.1| hypothetical protein ARB_04830 [Arthroderma benhamiae CBS 112371]
gi|291180111|gb|EFE35896.1| hypothetical protein ARB_04830 [Arthroderma benhamiae CBS 112371]
Length = 361
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 90/162 (55%), Gaps = 4/162 (2%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
V F++ +L+ ANS RR +AE PT+AID V++E N++VL DEFI+ R+GLIPL S
Sbjct: 35 VDFRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISHRLGLIPLCSKNC 94
Query: 79 VDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDAD 138
+LYSRDC C C+ C + +L KC ++ V DL R D
Sbjct: 95 DTDMLYSRDCDCEAGCARCVINLSLHAKCTTEEIMKVYARDLVVVGDRANEWVGNPVVTD 154
Query: 139 MNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
G +I KLR+GQE++ KKG KEHAKW PTA
Sbjct: 155 PEGKGP----IICKLRRGQEVKFNCIVKKGIAKEHAKWAPTA 192
>gi|296812527|ref|XP_002846601.1| RNA polymerase II subunit 3 [Arthroderma otae CBS 113480]
gi|238841857|gb|EEQ31519.1| RNA polymerase II subunit 3 [Arthroderma otae CBS 113480]
Length = 359
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 89/162 (54%), Gaps = 4/162 (2%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
V F++ +L+ ANS RR +AE PT+AID V++E N++VL DEFI+ R+GLIPL S
Sbjct: 35 VDFRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISHRLGLIPLCSKNC 94
Query: 79 VDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDAD 138
+LYSRDC C C C + +L KC ++ V DL R D
Sbjct: 95 DTDMLYSRDCDCEGGCQRCVINLSLHAKCTSEEIMKVYARDLVVVGDRANEWVGNPVLTD 154
Query: 139 MNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
G +I KLR+GQE++ KKG KEHAKW PTA
Sbjct: 155 PEGKGP----IICKLRRGQEVKFNCIVKKGIAKEHAKWAPTA 192
>gi|429328829|gb|AFZ80589.1| DNA-directed RNA polymerase II, putative [Babesia equi]
Length = 355
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 109/178 (61%), Gaps = 9/178 (5%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
+PS+ I +L + + F + ++++S AN++RR+ ++E P +AI+ V + N++VL DE+I+
Sbjct: 9 KPSIEIVELRQDRMDFVLLNSDVSTANAIRRIILSEIPALAIEIVTVLENTSVLHDEYIS 68
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVT-------TA 118
R+GL+P+ S + + C C D C++C+V++TLDV C D ++ VT A
Sbjct: 69 HRLGLLPIDS-TLASEFEFREKCQCSDKCAKCTVDYTLDVSCDDADSKVVTHFDIIADEA 127
Query: 119 DLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
++ S D R +P+ D N G TD I IVKL++GQ + ++ A KG GK HAKW
Sbjct: 128 EINSNDERKIPMPIPRADIS-NFNGATDGIPIVKLKRGQSISMKLTATKGLGKFHAKW 184
>gi|119190113|ref|XP_001245663.1| hypothetical protein CIMG_05104 [Coccidioides immitis RS]
gi|392868567|gb|EAS34367.2| RNA polymerase II subunit 3 [Coccidioides immitis RS]
Length = 345
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 96/174 (55%), Gaps = 4/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + V F++ +L+ ANSLRRV + E PT+AID V++E+N++VL DEFIA
Sbjct: 13 PQVTVREAEPHRVDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S ++Y+R+C C CS C + L KC + V DL R
Sbjct: 73 RLGLIPLHSKNCDVDMVYARECDCEGGCSRCVITLQLHAKCTGEGVMVVYARDLVVVGDR 132
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D G +I KLR+GQE+++ KKG KEHAKW+PTA
Sbjct: 133 ANEWVGNPVINDPAGKGP----IICKLRRGQEVKMTCTVKKGIAKEHAKWSPTA 182
>gi|320033013|gb|EFW14963.1| DNA-directed RNA polymerase 2 subunit RPB3 [Coccidioides posadasii
str. Silveira]
Length = 345
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 96/174 (55%), Gaps = 4/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + V F++ +L+ ANSLRRV + E PT+AID V++E+N++VL DEFIA
Sbjct: 13 PQVTVREAEPHRVDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S ++Y+R+C C CS C + L KC + V DL R
Sbjct: 73 RLGLIPLHSKNCDVDMVYARECDCEGGCSRCVITLQLHAKCTGEGVMVVYARDLVVVGDR 132
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D G +I KLR+GQE+++ KKG KEHAKW+PTA
Sbjct: 133 ANEWVGNPVINDPAGKGP----IICKLRRGQEVKMTCTVKKGIAKEHAKWSPTA 182
>gi|154274952|ref|XP_001538327.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414767|gb|EDN10129.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 576
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 94/165 (56%), Gaps = 10/165 (6%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
V F++ +L+ ANSLRR +AE PT+AID V++E+N++VL DEFI+ R+GLIPL S
Sbjct: 48 VDFRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISHRLGLIPLNSKNC 107
Query: 79 VDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDAD 138
+ YSRDC C C+ C V L +C + V DL V V R +
Sbjct: 108 DADMEYSRDCDCEGGCARCVVTLQLQARCTGEDIMKVYARDL-------VIVGDRANEWV 160
Query: 139 MNEY---GETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
N E +I KLR+GQE+++ AKKG KEHAKW PTA
Sbjct: 161 GNPVIMDAEGKGPVICKLRRGQEIKMTCIAKKGIAKEHAKWAPTA 205
>gi|315050740|ref|XP_003174744.1| DNA-directed RNA polymerase II subunit RPB3 [Arthroderma gypseum
CBS 118893]
gi|311340059|gb|EFQ99261.1| DNA-directed RNA polymerase II subunit RPB3 [Arthroderma gypseum
CBS 118893]
Length = 369
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 89/162 (54%), Gaps = 4/162 (2%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
V F++ +L+ ANS RR +AE PT+AID V++E N++VL DEFI+ R+GLIPL S
Sbjct: 43 VDFRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISHRLGLIPLCSKNC 102
Query: 79 VDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDAD 138
+LYSRDC C C+ C + +L KC + V DL R D
Sbjct: 103 DTDMLYSRDCDCEAGCARCVINLSLHAKCTSEDIMKVYARDLVVVGDRANEWVGNPVVTD 162
Query: 139 MNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
G +I KLR+GQE++ KKG KEHAKW PTA
Sbjct: 163 PEGKGP----IICKLRRGQEVKFNCIVKKGIAKEHAKWAPTA 200
>gi|303322553|ref|XP_003071268.1| DNA-directed RNA polymerase II 45 kDa polypeptide, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240110970|gb|EER29123.1| DNA-directed RNA polymerase II 45 kDa polypeptide, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 345
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 96/174 (55%), Gaps = 4/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + V F++ +L+ ANSLRRV + E PT+AID V++E+N++VL DEFIA
Sbjct: 13 PQVTVREAEPHRVDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S ++Y+R+C C CS C + L KC + V DL R
Sbjct: 73 RLGLIPLHSKNCDVDMVYARECDCEGGCSRCLITLQLHAKCTGEGVMVVYARDLVVVGDR 132
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D G +I KLR+GQE+++ KKG KEHAKW+PTA
Sbjct: 133 ANEWVGNPVINDPAGKGP----IICKLRRGQEVKMTCTVKKGIAKEHAKWSPTA 182
>gi|255082502|ref|XP_002504237.1| dna-directed RNA polymerase II polypeptide a [Micromonas sp.
RCC299]
gi|226519505|gb|ACO65495.1| dna-directed RNA polymerase II polypeptide a [Micromonas sp.
RCC299]
Length = 331
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 113/200 (56%), Gaps = 26/200 (13%)
Query: 2 PYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSD 61
P +P++ + ++T++ +KF + T+ S+AN+LRRV IAE PT+AID V++ NS+ L D
Sbjct: 8 PRQRRPNIVVQEMTEDTIKFVLTGTDTSIANALRRVIIAEVPTIAIDLVEVIENSSCLCD 67
Query: 62 EFIASRIGLIPLTSDEVVDRIL---YSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTA 118
EFIA R+GLIPL S + D Y+ D V V L VKCV DQT VT+
Sbjct: 68 EFIAHRLGLIPLVSHKAADMEFPYDYAGDDETV-----TDVPIELRVKCVSDQTEDVTSN 122
Query: 119 DL-----KSTDARVVPV------------TSRNRDADMNEY-GETDDILIVKLRKGQELR 160
DL + V PV T+ AD ++ G+ ILI+KLRK QE+
Sbjct: 123 DLLINGDYTQYDTVKPVHYRPSGRAFGDATASGAPADGSQADGDKHPILILKLRKNQEIN 182
Query: 161 LRAYAKKGFGKEHAKWNPTA 180
+R A+KG G++HAKW P A
Sbjct: 183 MRCVARKGVGRDHAKWQPVA 202
>gi|19074310|ref|NP_585816.1| DNA-DIRECTED RNA POLYMERASE II THIRD CHAIN [Encephalitozoon
cuniculi GB-M1]
gi|19068952|emb|CAD25420.1| DNA-DIRECTED RNA POLYMERASE II THIRD CHAIN [Encephalitozoon
cuniculi GB-M1]
gi|449329459|gb|AGE95731.1| DNA-directed RNA polymerase II third chain [Encephalitozoon
cuniculi]
Length = 240
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 102/174 (58%), Gaps = 18/174 (10%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
++ + +LT E+++F + +T + AN+LRR+ I+E PT+AID V++E N+TVL DE +A R
Sbjct: 3 ALTVEELTPEHIRFTLSNTTVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLAHR 62
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
+GLIP+ S + Y +C+C FCSECSV F +DV DD R V+T D+ + V
Sbjct: 63 LGLIPIYSKR---ELKYKEECSCSGFCSECSVVFEIDVVHTDDTLRTVSTRDIVCDEEDV 119
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
+ + +I KL + Q L+ R +KG GK HAKW+P +
Sbjct: 120 IIKSGP---------------VITKLARDQGLKARCIGRKGVGKTHAKWSPVSA 158
>gi|403220422|dbj|BAM38555.1| DNA-directed RNA polymerase II [Theileria orientalis strain
Shintoku]
Length = 354
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 108/181 (59%), Gaps = 7/181 (3%)
Query: 2 PYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSD 61
P +PS+ I DL + + F + ++++S AN++RR+ ++E P++AI+ V + N++VL D
Sbjct: 5 PRQIKPSIEIVDLRKDRMDFILLNSDVSTANAIRRIILSEIPSLAIEIVTVLENTSVLHD 64
Query: 62 EFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK 121
E+I+ R+GL+P+ S + + C C D C+ C+V++TLDV C D +R VT D+
Sbjct: 65 EYISHRLGLLPIDS-TLASEFEFRDKCQCTDKCARCTVDYTLDVSCNDSDSRVVTHFDIV 123
Query: 122 STDARVVPVTSRN------RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
+++ + +N R N G TD I IVKL++G + ++ A KG GK HAK
Sbjct: 124 PDESQSQSIYGKNLPMPIPRADATNFNGGTDGIPIVKLKRGHSINMKLTATKGLGKFHAK 183
Query: 176 W 176
W
Sbjct: 184 W 184
>gi|223998876|ref|XP_002289111.1| RP3A,-like protein to dna-directed RNA polymerase II third largest
subunit [Thalassiosira pseudonana CCMP1335]
gi|220976219|gb|EED94547.1| RP3A,-like protein to dna-directed RNA polymerase II third largest
subunit [Thalassiosira pseudonana CCMP1335]
Length = 297
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 105/187 (56%), Gaps = 22/187 (11%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + +++F + +T+ S+AN+LRR+ IAE PT+AID V+ NS+VL+DE+IA
Sbjct: 4 PKVEILSMAPHHIQFILSETDTSMANTLRRIMIAEVPTLAIDLVEYSENSSVLNDEYIAH 63
Query: 67 RIGLIPLTSDEVVDRILYS---RDCTCVDFCSECSVEFTLDVKCVD-DQTRH-------- 114
R+GL+P+ R + ++C C D C C VEF LDV +QTR
Sbjct: 64 RLGLVPI-------RFMAEGSLKECVCYDRCPRCCVEFELDVNFDKVNQTRPDTERDLAL 116
Query: 115 -VTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEH 173
VT+ DL S + V P N + + E I IVKL GQ L+L+A A+ G KEH
Sbjct: 117 TVTSRDLISNNMLVSPAHFLNEEEQDESHDE--GISIVKLGPGQHLKLKAIARMGISKEH 174
Query: 174 AKWNPTA 180
AKW P A
Sbjct: 175 AKWCPVA 181
>gi|258565481|ref|XP_002583485.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Uncinocarpus
reesii 1704]
gi|237907186|gb|EEP81587.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Uncinocarpus
reesii 1704]
Length = 345
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 95/174 (54%), Gaps = 4/174 (2%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + D+ V F++ +L+ ANSLRRV + E PT+AID V++E+N++VL DEFIA
Sbjct: 13 PQVTVRDVETHRVDFRLMSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S ++Y+RDC C CS C + L KC + V DL R
Sbjct: 73 RLGLIPLHSKNCDVDMVYARDCDCEGGCSRCIITLQLHAKCTGEGVMVVYARDLVVIGDR 132
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D G +I KLR+ QE+++ KKG KEHAKW PTA
Sbjct: 133 ANEWVGNPVINDPAGKGP----IICKLRRDQEVKMTCTVKKGIAKEHAKWAPTA 182
>gi|449018304|dbj|BAM81706.1| RNA polymerase II third large subunit [Cyanidioschyzon merolae
strain 10D]
Length = 533
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 109/207 (52%), Gaps = 35/207 (16%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P + +T L F + DT++SVAN+LRR IA PTM+ID V + N + L DEF+A
Sbjct: 28 PKLRLTRLAATECDFTLSDTDISVANALRRAMIASVPTMSIDLVTIYVNDSPLHDEFVAH 87
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDF--------------CSECSVEFTLDVKCVDD-- 110
R+GL+PL SD + Y+RDC C C +CSVE+ LDV C D
Sbjct: 88 RLGLVPLRSD-TAEYFNYNRDCDCTQSRIAALSGNPMEATNCEKCSVEYILDVTCPPDGE 146
Query: 111 -QTRHVTTADLKSTDAR----------VVPVTSRNR------DADMNEYGETDDILIVKL 153
+ +VT+ L+ D R VVP+ ++ D+ + I+I KL
Sbjct: 147 LEEMNVTSRHLQ-MDPRYFDGPAYVRAVVPIHRPDQPWELAPDSSRDRTSADAGIVICKL 205
Query: 154 RKGQELRLRAYAKKGFGKEHAKWNPTA 180
R+GQ L +R AKKG G+EHAKW+P A
Sbjct: 206 RRGQRLYVRCIAKKGTGREHAKWSPVA 232
>gi|353235564|emb|CCA67575.1| related to RPB3-DNA-directed RNA polymerase II chain
[Piriformospora indica DSM 11827]
Length = 336
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
P+V I +L + F + L ANS RR +A+ PT+AID V E N+TVL DEFIA
Sbjct: 2 NPNVRIRELQRDKCNFVLSGVNLGFANSFRRTMMADIPTVAIDMVVFEVNTTVLPDEFIA 61
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKC-VDDQTRHVTTADLK--- 121
R+G+IPL S + + Y+RDC C C C V TL V+C + T ++T+ L+
Sbjct: 62 HRLGMIPLISTNCDEGMRYTRDCDCELGCPLCMVVLTLHVRCDMPGTTMNITSDHLQIQS 121
Query: 122 STDA-RVVPVTSRNRDADM----NEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
DA +T R D + + ILI LRKGQEL++R AKKG K+HAKW
Sbjct: 122 GGDAWGGEELTKRGEDFGLPVSKSRGFNGHPILIASLRKGQELKIRCEAKKGIAKDHAKW 181
Query: 177 NP 178
+P
Sbjct: 182 SP 183
>gi|303389576|ref|XP_003073020.1| DNA-directed RNA polymerase II subunit Rpb3 [Encephalitozoon
intestinalis ATCC 50506]
gi|303302164|gb|ADM11660.1| DNA-directed RNA polymerase II subunit Rpb3 [Encephalitozoon
intestinalis ATCC 50506]
Length = 240
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 101/174 (58%), Gaps = 18/174 (10%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
++ I +LT E ++F + +T + AN+LRR+ I+E PT+AID V++E N+TVL DE +A R
Sbjct: 3 ALSIEELTPERIRFTLSNTTVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLAHR 62
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
+GLIP+ S + Y +C+C FCSECSV F +DV +D R V+T D+ + V
Sbjct: 63 LGLIPVYSKR---ELKYKDECSCSGFCSECSVVFEIDVVHTEDALRVVSTRDIICDEEDV 119
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
V + +I KL + Q L+ R +KG G+ HAKW+P +
Sbjct: 120 VVKSGP---------------IITKLARDQGLKARCIGRKGIGRTHAKWSPVSA 158
>gi|303281664|ref|XP_003060124.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458779|gb|EEH56076.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 333
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 110/197 (55%), Gaps = 20/197 (10%)
Query: 2 PYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSD 61
P PS+ + +LT E ++F + T+ SVAN+LRRV IAE PT+AID V + N++ L D
Sbjct: 7 PKQRSPSIVVQELTHEKIRFALLHTDTSVANALRRVIIAEVPTLAIDLVDVIENTSCLCD 66
Query: 62 EFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVK-CVDDQTRHVTTADL 120
EFIA R+GLIPL S++ V+ + + D D S V F L+ C +T VT+ DL
Sbjct: 67 EFIAHRLGLIPLLSEKAVE-MEFPYDYAGDDE-SVTDVHFELNTGICASAETVDVTSNDL 124
Query: 121 KSTDARVVPVTSRNRDADMNEYGETD-----------------DILIVKLRKGQELRLRA 163
D RV PV ++ + G + ++IVKLR+GQ++ +R
Sbjct: 125 VCYDPRVAPVNYHPGESIKGKGGAMEFEAQAAARGPDDGPDIPGVVIVKLRRGQQINMRC 184
Query: 164 YAKKGFGKEHAKWNPTA 180
A+KG G++HAKW P A
Sbjct: 185 VARKGVGRDHAKWQPVA 201
>gi|389638262|ref|XP_003716764.1| DNA-directed RNA polymerase II subunit RPB3 [Magnaporthe oryzae
70-15]
gi|351642583|gb|EHA50445.1| DNA-directed RNA polymerase II subunit RPB3 [Magnaporthe oryzae
70-15]
gi|440465143|gb|ELQ34483.1| DNA-directed RNA polymerase II subunit RPB3 [Magnaporthe oryzae
Y34]
gi|440489706|gb|ELQ69335.1| DNA-directed RNA polymerase II subunit RPB3 [Magnaporthe oryzae
P131]
Length = 330
Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 101/166 (60%), Gaps = 10/166 (6%)
Query: 18 NVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDE 77
+V F++ + +LS+ANS+RRV +AE PT+AID +++ N++VL+DEFIA R+GL+PL++
Sbjct: 26 HVNFELSNVDLSLANSIRRVMLAEIPTVAIDNCEIKENTSVLADEFIAHRLGLVPLSA-R 84
Query: 78 VVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDA 137
++Y+RDC C +C CSV T+ KC + +V AR + V R +
Sbjct: 85 GASELVYARDCDCEQYCENCSVIITIHAKCESEDPNYVM-----KVYARDMVVDGRRVNQ 139
Query: 138 DMNEYGETD----DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
+ TD +++ KLR+ QE+ +R AKKG KEHAKW P
Sbjct: 140 SVGTPVITDPDGLGVILFKLRRNQEVHIRCVAKKGIAKEHAKWCPA 185
>gi|390602421|gb|EIN11814.1| hypothetical protein PUNSTDRAFT_61925 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 301
Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 117/195 (60%), Gaps = 27/195 (13%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
+P+V I DL + V F +E+ +L+ ANSLRRV +A+ PT+AID V++E N+TVLSDEF+A
Sbjct: 8 EPTVRIRDLKKDRVNFVLENVDLAFANSLRRVMMADIPTVAIDLVEIETNTTVLSDEFLA 67
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+G++PL S + I YSRDC+C+ CS CS+ L V C +D TT ++ S
Sbjct: 68 HRLGMVPLVSTNCDEAIRYSRDCSCMSSCSYCSIVLQLHVSCTEDD----TTLNVTSDHL 123
Query: 126 RVVPVTSRNRDADMNEYGE-------------------TDDILIVKLRKGQELRLRAYAK 166
VVP + D D + GE D +L+ KLRKGQEL++R AK
Sbjct: 124 DVVPAS----DDDQGDPGEELTKRVENFGSPVGKGVEGVDPVLLCKLRKGQELKVRCIAK 179
Query: 167 KGFGKEHAKWNPTAG 181
KG KEHAK++P A
Sbjct: 180 KGISKEHAKFSPCAA 194
>gi|398411480|ref|XP_003857078.1| hypothetical protein MYCGRDRAFT_67037 [Zymoseptoria tritici IPO323]
gi|339476963|gb|EGP92054.1| hypothetical protein MYCGRDRAFT_67037 [Zymoseptoria tritici IPO323]
Length = 361
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 111/201 (55%), Gaps = 23/201 (11%)
Query: 2 PYAN---------QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQL 52
PY N P V I + +KF + +T L+ ANS+RR +AE PT+AID V++
Sbjct: 3 PYGNYDGMDADDAGPKVTIRETNKTTIKFALSNTSLAFANSIRRTMLAEIPTIAIDLVEV 62
Query: 53 EANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC-TCVDFCSECSVEFTLDVKC-VDD 110
EAN++VL+DEF+A R+GLIPL++ V + + + RDC C + C +CSV L+V D
Sbjct: 63 EANTSVLADEFLAHRLGLIPLSTKGVEEMVDW-RDCDQCDEHCDQCSVILRLNVANRSSD 121
Query: 111 QTRHVTTADL---KSTDARVVPVTSRNRDAD-MNEYG-------ETDDILIVKLRKGQEL 159
Q V DL +A +D + E G + LI +LR+GQE+
Sbjct: 122 QNLKVFARDLFVESGANAGYNRSNGMGNSSDELPERGRPIVMDRDNQGPLICQLRRGQEI 181
Query: 160 RLRAYAKKGFGKEHAKWNPTA 180
+L+ A+KG KEHAKW PTA
Sbjct: 182 KLKCIARKGIAKEHAKWAPTA 202
>gi|396081532|gb|AFN83148.1| DNA-directed RNA polymerase II subunit Rpb3 [Encephalitozoon
romaleae SJ-2008]
Length = 240
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 97/170 (57%), Gaps = 18/170 (10%)
Query: 11 ITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGL 70
+ +LT E +KF + + + AN+LRR+ I+E PT+AID V++E N+TVL DE +A R+GL
Sbjct: 6 VEELTPERIKFTLSNATVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLAHRLGL 65
Query: 71 IPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPV 130
+P+ S + Y +C+C FCSECSV F +D+ +D R V+ D+ + VV
Sbjct: 66 VPIYSKR---ELKYKEECSCSGFCSECSVVFEIDIVHTEDALRVVSARDIVCDEGDVVIK 122
Query: 131 TSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ +I KL + Q L+ R +KG GK HAKW+P +
Sbjct: 123 SGP---------------MITKLARDQGLKARCIGRKGIGKIHAKWSPVS 157
>gi|156097458|ref|XP_001614762.1| DNA-directed RNA polymerase II [Plasmodium vivax Sal-1]
gi|148803636|gb|EDL45035.1| DNA-directed RNA polymerase II, putative [Plasmodium vivax]
Length = 333
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 11/180 (6%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
A + V IT LT + + F + ++ +AN+LRR+ ++E PT+AID V + N++ DEF
Sbjct: 9 AKRHEVEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEF 68
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
+A R+GLIP+ S V + C C + CS+C++++ + VKC + +T D++S
Sbjct: 69 LAHRLGLIPIDSTN-VKNFEFREKCKCKETCSKCTIQYLIQVKCNNVSKIEITHHDIESV 127
Query: 124 DAR-----VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+ VP+ RN N+ E++ I IV L K Q L ++ A KG GK HAKW P
Sbjct: 128 EHEPNVPMPVPLEDRN-----NQMAESNAIPIVTLSKNQTLHMKLIATKGIGKMHAKWIP 182
>gi|401826632|ref|XP_003887409.1| DNA-directed RNA polymerase II subunit RPB3 [Encephalitozoon hellem
ATCC 50504]
gi|395459927|gb|AFM98428.1| DNA-directed RNA polymerase II subunit RPB3 [Encephalitozoon hellem
ATCC 50504]
Length = 240
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 18/170 (10%)
Query: 11 ITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGL 70
+ +LT ++KF + +T + AN+LRR+ I+E PT+AID V++E N+TVL DE +A R+GL
Sbjct: 6 VEELTAGHIKFTLSNTTVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLAHRLGL 65
Query: 71 IPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPV 130
+P+ S + Y +C C FCSECSV F +DV +D R V+T D+ + VV
Sbjct: 66 VPIYSKRSLK---YKEECGCSGFCSECSVVFEIDVVHTEDTLRAVSTRDIICDEEDVVIK 122
Query: 131 TSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ +I KL + Q L+ R +KG GK H+KW+P +
Sbjct: 123 SGP---------------IITKLARDQGLKARCIGRKGIGKTHSKWSPVS 157
>gi|378756240|gb|EHY66265.1| RNA polymerase II subunit 3 [Nematocida sp. 1 ERTm2]
Length = 254
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 95/172 (55%), Gaps = 12/172 (6%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I ++T++N+KF +ED L +AN+LRRV + E PT+AID VQ + N TV+ +E R+
Sbjct: 4 IEIEEVTEDNIKFTLEDCTLGMANALRRVIMTEIPTLAIDIVQFDKNYTVIPEEMTTDRL 63
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ S V++ LY +DC+C FC CS+ LDVK T VT+ L
Sbjct: 64 GLIPIESS-TVEKYLYPKDCSCKSFCKNCSISIVLDVKNDGPTTLTVTSKSL-------- 114
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+N +I +L Q ++ + A KG GK+HAKW+P A
Sbjct: 115 ---FMEGGVSLNIGDPKHPSIITRLGHKQSIKCKCIAVKGVGKKHAKWSPVA 163
>gi|407925105|gb|EKG18126.1| DNA-directed RNA polymerase RBP11-like protein [Macrophomina
phaseolina MS6]
Length = 287
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 82/136 (60%), Gaps = 5/136 (3%)
Query: 45 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 104
MAID V++E N++VL+DEFI R+GLIPL S D + Y+RDC C +C CSV TL+
Sbjct: 1 MAIDLVEVEKNTSVLADEFICHRLGLIPLNSRGCED-VAYTRDCDCEQYCENCSVLLTLN 59
Query: 105 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 164
+C D+ V DL + AR D N +G +I KLRKGQEL++R
Sbjct: 60 ARCTGDEVMTVYARDLLVSAARANEWVGSPVIKDPNGHG----AIICKLRKGQELKMRCI 115
Query: 165 AKKGFGKEHAKWNPTA 180
AKKG KEHAKW PTA
Sbjct: 116 AKKGIAKEHAKWAPTA 131
>gi|302833623|ref|XP_002948375.1| hypothetical protein VOLCADRAFT_88650 [Volvox carteri f.
nagariensis]
gi|300266595|gb|EFJ50782.1| hypothetical protein VOLCADRAFT_88650 [Volvox carteri f.
nagariensis]
Length = 272
Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 99/162 (61%), Gaps = 13/162 (8%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD 80
F++++T++S AN+LRRV IAE PT+AID V++E N+TVL+DEF+A R+GL+PL S E V
Sbjct: 3 FELKNTDVSSANALRRVMIAEVPTIAIDLVEMENNTTVLNDEFLAHRLGLLPLVSTEAV- 61
Query: 81 RILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR--VVPVTSRNRDAD 138
+ R + F+LDV C D VT+ DL + V PV +N D
Sbjct: 62 --AWKRPFEWSNDADMIETAFSLDVTCTVDGVMDVTSNDLVPLNPEHGVFPVNYQNPDE- 118
Query: 139 MNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
I+I K+R+GQ+L+L A A+KG GK+HAK+ P A
Sbjct: 119 -------KPIVICKMRRGQQLKLVARARKGIGKDHAKFIPVA 153
>gi|297527612|ref|YP_003669636.1| RNA polymerase insert [Staphylothermus hellenicus DSM 12710]
gi|297256528|gb|ADI32737.1| RNA polymerase insert [Staphylothermus hellenicus DSM 12710]
Length = 280
Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 100/176 (56%), Gaps = 18/176 (10%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+++ + T +K ++D L V NS+RRV IAE PTMAID V NS+V DE+IA R+
Sbjct: 3 INVLEKTPLRLKLYIKDIPLHVLNSIRRVVIAEVPTMAIDSVVFTMNSSVFYDEYIAHRL 62
Query: 69 GLIPLTSDEVVDRILYSRDCTCVD----FCSECSVEFTLDVKCVDDQTRHVTTADLKSTD 124
GLIPLTS+ +D+ +C F +C V+ L+ K + + + + DLK++D
Sbjct: 63 GLIPLTSEAALDKYKSPEECKEASDRGLFTEDCFVKLDLEGKGEEGKLVTLHSGDLKTSD 122
Query: 125 ARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V PV D+I I+ L K QE+RL AYA+ G GKEHAKW+P +
Sbjct: 123 PDVKPV--------------YDNIPIIVLGKNQEIRLEAYARLGRGKEHAKWSPVS 164
>gi|389583068|dbj|GAB65804.1| DNA-directed RNA polymerase II [Plasmodium cynomolgi strain B]
Length = 334
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 103/178 (57%), Gaps = 7/178 (3%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
A + V IT LT + + F + ++ +AN+LRR+ ++E PT+AID V + N++ DEF
Sbjct: 10 AKRHEVEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEF 69
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
+A R+GLIP+ S V + C C + CS+C++++ + VKC + +T D++S
Sbjct: 70 LAHRLGLIPIDSRN-VKNFEFREKCKCKETCSKCTIQYLIQVKCNNVSKIDITHYDIESV 128
Query: 124 DAR---VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+ +PV +R+ N+ E++ I IV L K Q L ++ A KG GK HAKW P
Sbjct: 129 EHEPNVPMPVPFEDRN---NKMAESNAIPIVTLSKNQTLHMKLIATKGIGKMHAKWIP 183
>gi|221054724|ref|XP_002258501.1| dna-directed rna polymerase II [Plasmodium knowlesi strain H]
gi|193808570|emb|CAQ39273.1| dna-directed rna polymerase II, putative [Plasmodium knowlesi
strain H]
Length = 334
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 103/178 (57%), Gaps = 7/178 (3%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
A + V IT LT + + F + ++ +AN+LRR+ ++E PT+AID V + N++ DEF
Sbjct: 10 AKRHEVEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEF 69
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
+A R+GLIP+ S V + C C + CS+C++++ + VKC + VT D++S
Sbjct: 70 LAHRLGLIPIDSRN-VKNFEFREKCKCKETCSKCTIQYLIQVKCNNVSKIDVTHYDIESV 128
Query: 124 DAR---VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+ +PV +R+ N+ +++ I IV L K Q L ++ A KG GK HAKW P
Sbjct: 129 EHEPNVPMPVPFEDRN---NKMAQSNAIPIVTLSKNQTLHMKLIATKGIGKMHAKWIP 183
>gi|146169387|ref|XP_001471367.1| DNA-directed rna polymerase II subunit [Tetrahymena thermophila]
gi|116575|sp|P16925.1|CNJC_TETTH RecName: Full=Conjugation stage-specific protein
gi|2654270|emb|CAA44194.1| RNA polymerase subunit [Tetrahymena thermophila]
gi|146145111|gb|EDK31657.1| DNA-directed rna polymerase II subunit [Tetrahymena thermophila
SB210]
Length = 310
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 104/179 (58%), Gaps = 14/179 (7%)
Query: 11 ITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGL 70
+T+L + +F +E+ ++S+ANSLRR+ +AE T+AI V++ N++ L DE+IA R+GL
Sbjct: 8 LTNLEEFKCEFTLENCDISLANSLRRILLAEIETIAIHNVKVYENTSSLPDEYIAHRLGL 67
Query: 71 IPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS----TD-- 124
IPL S + VD Y +C C C C++ F L V ++ VT+ DLK TD
Sbjct: 68 IPLNSAK-VDDYNYIWNCNCQGECDRCTIHFDLRVSNFTNEVLEVTSLDLKQRQDHTDED 126
Query: 125 -ARVVPVTSRNRDADMNEYGETDD--ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
R + V S RD EYG + I I+KL KGQ++ A+KG GK H+KWNP
Sbjct: 127 AVRPIKVYSILRD----EYGNKREVGIPIIKLSKGQQIHFECEAQKGIGKMHSKWNPVC 181
>gi|159489602|ref|XP_001702786.1| DNA-directed RNA polymerase II, 36 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158280808|gb|EDP06565.1| DNA-directed RNA polymerase II, 36 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 275
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 106/180 (58%), Gaps = 15/180 (8%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
+ +P++ + L + + F++++T+ S AN+LRR +AE PT+AID V++E N+TVL+DEF
Sbjct: 10 SRKPTISVRTLEPDYMVFELKNTDPSSANALRRAMVAEVPTIAIDLVEMENNTTVLNDEF 69
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL--K 121
+A R+GLIPL S V + R F+LDV C + VT+ DL
Sbjct: 70 LAHRLGLIPLVSRNAV---YWKRPFEWSGDNDIIETAFSLDVMCEQEGVMDVTSNDLVPL 126
Query: 122 STDARVVPVTSRNRDADMNEYGETDD-ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
DA VVPV N + T+ I+I KLR+GQ L+L A A+KG GK+HAK+ P A
Sbjct: 127 EPDAGVVPV---------NYHSATEKPIVICKLRRGQHLKLVARARKGIGKDHAKFIPVA 177
>gi|126465715|ref|YP_001040824.1| DNA-directed RNA polymerase subunit D [Staphylothermus marinus F1]
gi|126014538|gb|ABN69916.1| DNA-directed RNA polymerase, subunit D [Staphylothermus marinus F1]
Length = 280
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 99/176 (56%), Gaps = 18/176 (10%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+++ + T ++ ++D L V NS+RR IAE PTMAID V NS+V DE+IA R+
Sbjct: 3 INVLEKTPLRLRLYIKDIPLHVLNSIRRAIIAEVPTMAIDSVVFTMNSSVFYDEYIAHRL 62
Query: 69 GLIPLTSDEVVDRILYSRDCTCVD----FCSECSVEFTLDVKCVDDQTRHVTTADLKSTD 124
GLIPLTS+ +D+ +C F +C V+ L+ K + + + + DLK++D
Sbjct: 63 GLIPLTSEAALDKYKSPEECREAGDRGLFTEDCFVKLDLEGKGEEGKLVTLHSGDLKTSD 122
Query: 125 ARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V PV D+I I+ L K QE+RL AYA+ G GKEHAKW+P +
Sbjct: 123 PDVKPV--------------YDNIPIIVLGKNQEIRLEAYARLGRGKEHAKWSPVS 164
>gi|156082852|ref|XP_001608910.1| DNA-directed RNA polymerase II [Babesia bovis T2Bo]
gi|154796160|gb|EDO05342.1| DNA-directed RNA polymerase II, putative [Babesia bovis]
Length = 382
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 113/217 (52%), Gaps = 48/217 (22%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
+PS+ I LT + F + + +++ ANSLRR+ ++E P++AI+ V + N++VL DE+IA
Sbjct: 9 RPSIDIVSLTSTKMIFILLNADVATANSLRRIMLSEIPSLAIEVVTVLENTSVLHDEYIA 68
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL----- 120
R+GL+P+ S + Y CTC D CS C+VE++LDVKC+DD TR VT D+
Sbjct: 69 HRLGLLPIESSSARN-FEYRDKCTCSDKCSRCTVEYSLDVKCMDD-TRVVTHYDINLDSW 126
Query: 121 KSTDARV---VPVTSRNRDADMNEYGE--------------------------------- 144
+++ V +PV + DA N G+
Sbjct: 127 ENSRGNVNAPMPVPRPSADALGNAPGDQGSDPQRVNSSGNATARNVQNPDGPHTGAVDRK 186
Query: 145 -----TDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
T I IVKL++GQ L L+ A KG GK HAKW
Sbjct: 187 SGSVPTGGIPIVKLKRGQCLSLKMTATKGLGKFHAKW 223
>gi|124507008|ref|XP_001352101.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
gi|23505130|emb|CAD51912.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
Length = 335
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 102/177 (57%), Gaps = 9/177 (5%)
Query: 5 NQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFI 64
N+ ++IT LT + + F + ++ +AN+LRR+ ++E PT+AID V + N++ DEFI
Sbjct: 9 NKHQINITKLTKDELYFTLYNSNSGIANALRRIMLSEIPTLAIDVVNVYENTSAFHDEFI 68
Query: 65 ASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTD 124
A R+GLIP+ S V+ + C C + CS+C++++ ++VKC V+ D++S +
Sbjct: 69 AHRLGLIPIDSRN-VNNYEFREKCKCKETCSKCTIQYIIEVKCNHSNKIDVSHYDIESLE 127
Query: 125 AR---VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+P+ N+++ + I IV L K Q L ++ A KG GK HAKW P
Sbjct: 128 HEPNVPMPIPHGNKNS-----VSENAIPIVTLSKNQTLHMKLIATKGIGKMHAKWIP 179
>gi|123448560|ref|XP_001313008.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
gi|121894876|gb|EAY00079.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
Length = 322
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 103/187 (55%), Gaps = 16/187 (8%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P + +T T +++F++ + AN+LRRV IAE PT+A+D V+ N++ L DE+IA
Sbjct: 13 PQIFVTAKTSNSIEFRLMNVSRHFANALRRVMIAEVPTLAVDTVEFFQNTSPLPDEYIAH 72
Query: 67 RIGLIPLTSDEVVDRILYSRDCTC----VDFCSECSVEFTLDVKC--VDDQTRHVTTADL 120
R+ LIP S++ D+ Y C C + +C C+V +T+D C D VT+ DL
Sbjct: 73 RLALIPFVSED-ADKFFYHSQCNCDGSQLGYCPNCTVIYTIDAHCEPESDSVVEVTSNDL 131
Query: 121 K-------STDARVVPVTSRNRDADMNEYGETD--DILIVKLRKGQELRLRAYAKKGFGK 171
K + + + + + A + G+++ + I KL GQ LRL AY +KG G+
Sbjct: 132 KLIAPHKWADKSTMGSIHIGVKPATLFANGDSNPQPVTITKLAPGQTLRLAAYIRKGIGR 191
Query: 172 EHAKWNP 178
HAKW+P
Sbjct: 192 NHAKWSP 198
>gi|358055923|dbj|GAA98268.1| hypothetical protein E5Q_04951 [Mixia osmundae IAM 14324]
Length = 368
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 98/179 (54%), Gaps = 14/179 (7%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
++ + ++ + VKF E +LS+AN LRRV +E PT+AI ++ ++ NS+VL DEF+A R
Sbjct: 26 NIAVQEIQHDRVKFAWEGVDLSLANGLRRVLQSEIPTLAIGYISVKHNSSVLPDEFLAHR 85
Query: 68 IGLIPLTSDEVVDRILYSRD-CTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
+ LIPL S + ++ RD C C D C EC+V LDV C R D+ S D
Sbjct: 86 LALIPLQSTGIAHKLEKERDLCGCDDGCDECTVMLQLDVAC-----RSAGKLDVTSKDLV 140
Query: 127 VVPVTSRNRDADMNEYG-----ETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V+P R D +G ++ ILI +L GQ + L A A +G +HAK P +
Sbjct: 141 VLP---RQDGQDRGGFGMPMSEHSNGILIAQLGPGQRITLLATAHRGIALDHAKHCPVS 196
>gi|385305361|gb|EIF49344.1| dna-directed rna polymerase ii 45 kda polypeptide [Dekkera
bruxellensis AWRI1499]
Length = 268
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 90/144 (62%), Gaps = 5/144 (3%)
Query: 38 FIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSEC 97
+AE PT+AID V ++ N++VL+DEF+A R+GL+PL S++ +D++ Y+RDCTC D C +C
Sbjct: 1 MLAEVPTLAIDLVDIKRNTSVLADEFLAHRLGLVPLESED-IDQLKYTRDCTCEDHCEKC 59
Query: 98 SVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQ 157
SV L +C D+T +V ++ L A T N + + +LI KL++ Q
Sbjct: 60 SVTLQLKARCDSDETMNVYSSHLVVISAN----TGLNLGQPVIRDPQKKGVLICKLKRHQ 115
Query: 158 ELRLRAYAKKGFGKEHAKWNPTAG 181
EL + AKKG KEHAKW+P +
Sbjct: 116 ELNIVCIAKKGIAKEHAKWSPCSA 139
>gi|387593833|gb|EIJ88857.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm3]
gi|387595137|gb|EIJ92763.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm1]
Length = 254
Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 12/172 (6%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I ++T+E++KF +E L +AN+LRRV + E PT+AID VQ + N TV+ +E R+
Sbjct: 4 IEIEEVTEESIKFTLEGCTLGMANALRRVIMTEIPTLAIDIVQFDKNYTVIPEEMTTDRL 63
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ S +V++ LY +DC+C FC CS+ LDVK VT+ L +
Sbjct: 64 GLIPIESS-LVEKYLYPKDCSCKSFCKNCSISIVLDVKNDGQTPMTVTSKSLFVEGGDPI 122
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ + +I +L Q ++ + A KG GK+H+KW+P +
Sbjct: 123 NIGDPRYPS-----------IITRLGHKQSIKCKCIAVKGIGKKHSKWSPVS 163
>gi|428184897|gb|EKX53751.1| hypothetical protein GUITHDRAFT_100722 [Guillardia theta CCMP2712]
Length = 319
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 105/193 (54%), Gaps = 17/193 (8%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
M P + + L D N+ F + +T++S+AN+LR+ I+E PT+AID V++E NS+VL+
Sbjct: 1 MASTRTPLIEVNFLDDYNINFVLSNTDVSIANALRKAIISEVPTIAIDLVEIEENSSVLA 60
Query: 61 DEFIASRIGLIPLTSDEVV--DRILYSRDC--TCVDFC--------SECSVEFTLDVKCV 108
DEFIA R+GLIPL S + D + RD F +C ++F L+V+
Sbjct: 61 DEFIAHRLGLIPLVSTRAMHADGPVPFRDVEGNITSFLWHHEASDDKDCEIKFELEVRNT 120
Query: 109 DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKG 168
+D V + R++ V EY ++I KL++ Q ++L A AKKG
Sbjct: 121 EDNPMEVRLILI-----RLLEVLRHGGGVKPVEYDPEYPVVIAKLKRNQAIKLTAIAKKG 175
Query: 169 FGKEHAKWNPTAG 181
GK H+KW+P +G
Sbjct: 176 VGKMHSKWSPASG 188
>gi|320101538|ref|YP_004177130.1| DNA-directed RNA polymerase subunit D [Desulfurococcus mucosus DSM
2162]
gi|319753890|gb|ADV65648.1| DNA-directed RNA polymerase, subunit D [Desulfurococcus mucosus DSM
2162]
Length = 280
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 95/174 (54%), Gaps = 18/174 (10%)
Query: 11 ITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGL 70
I + T +K ++ L V NSLRR I+E PTMA+D+V + NS+V DE+IA R+GL
Sbjct: 5 IIEKTPYTIKLHLKGIPLHVVNSLRRTIISEVPTMAVDYVAITENSSVFYDEYIAHRLGL 64
Query: 71 IPLTSDEVVDRILYSRDCTCVD----FCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
IPL SDE + + +C F +C L+ K +D + + L+S+D
Sbjct: 65 IPLKSDEALHKYKPPEECAEAGEKGVFSQDCFATLRLEAKGPEDGVLTIYSEMLESSDPD 124
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V PV YG+ + +V+L + Q +RL AYA+ G GKEHAKW+P +
Sbjct: 125 VTPV-----------YGK---VPVVRLTRNQSIRLEAYARLGRGKEHAKWSPVS 164
>gi|390939160|ref|YP_006402898.1| DNA-directed RNA polymerase [Desulfurococcus fermentans DSM 16532]
gi|390192267|gb|AFL67323.1| DNA-directed RNA polymerase [Desulfurococcus fermentans DSM 16532]
Length = 284
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 98/179 (54%), Gaps = 20/179 (11%)
Query: 8 SVHITDL--TDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
S+HI L T +K + D L + NSLRR ++E PTMA+D+V + NS+V DE+I+
Sbjct: 4 SLHIDILEKTPSTIKLYLRDVPLHLVNSLRRTILSEVPTMAVDYVAITENSSVFYDEYIS 63
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVD----FCSECSVEFTLDVKCVDDQTRHVTTADLK 121
R+GLIPL S+E +++ +C F +C V L+ + V + DL
Sbjct: 64 HRLGLIPLKSNEALNKYKPPEECAEAGDRGIFSQDCFVTLRLEASGPEKGVLTVYSRDLV 123
Query: 122 STDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S+D VVP+ YGE I I+KL K Q +RL AYA+ G GKEH KW+P +
Sbjct: 124 SSDPDVVPI-----------YGE---IPILKLIKDQSIRLEAYARLGRGKEHIKWSPVS 168
>gi|218884674|ref|YP_002429056.1| DNA-directed RNA polymerase subunit D [Desulfurococcus
kamchatkensis 1221n]
gi|218766290|gb|ACL11689.1| DNA-directed RNA polymerase subunit D [Desulfurococcus
kamchatkensis 1221n]
Length = 280
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 96/176 (54%), Gaps = 18/176 (10%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I + T +K + D L + NSLRR ++E PTMA+D+V + NS+V DE+I+ R+
Sbjct: 3 IDILEKTPSTIKLYLRDVPLHLVNSLRRTILSEVPTMAVDYVAITENSSVFYDEYISHRL 62
Query: 69 GLIPLTSDEVVDRILYSRDCTCVD----FCSECSVEFTLDVKCVDDQTRHVTTADLKSTD 124
GLIPL S+E +++ +C F +C V L+ + V + DL S+D
Sbjct: 63 GLIPLKSNEALNKYKPPEECAEAGDRGIFSQDCFVTLRLEASGPEKDVLTVYSRDLVSSD 122
Query: 125 ARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
VVPV YGE I I+KL K Q +RL AYA+ G GKEH KW+P +
Sbjct: 123 PDVVPV-----------YGE---IPILKLIKDQSIRLEAYARLGRGKEHIKWSPVS 164
>gi|405121028|gb|AFR95798.1| RNA polymerase II subunit 3 [Cryptococcus neoformans var. grubii
H99]
Length = 377
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 104/202 (51%), Gaps = 31/202 (15%)
Query: 5 NQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFI 64
NQP + + +L + + F + EL+ ANSLRRV +A+ PT+AID V N+T L+DE I
Sbjct: 23 NQPRLLLRNLNESDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMI 82
Query: 65 ASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDD---QTRHVTTADLK 121
A R+GLIPL S V + Y+RDC C + C C V L V + Q VT+ L+
Sbjct: 83 AHRLGLIPLISRNVSKGLRYTRDCDCDEGCYYCMVTLRLKVAFSGNDGEQFMRVTSDMLE 142
Query: 122 --------------------STDARVVPVTSRNRDADMNE-YGETD----DILIVKLRKG 156
S + R++ NRD +M + G+ + ILI K+ KG
Sbjct: 143 VVPSPGGPPPPNPYGPPPELSEEDRII---INNRDPEMGQPIGKGNPTVPPILIAKMGKG 199
Query: 157 QELRLRAYAKKGFGKEHAKWNP 178
QE+ + A KG K HAKW+P
Sbjct: 200 QEIDVLCKAYKGIAKHHAKWSP 221
>gi|134112527|ref|XP_775239.1| hypothetical protein CNBE5120 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257891|gb|EAL20592.1| hypothetical protein CNBE5120 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 377
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 104/202 (51%), Gaps = 31/202 (15%)
Query: 5 NQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFI 64
NQP + + +L + + F + EL+ ANSLRRV +A+ PT+AID V N+T L+DE I
Sbjct: 23 NQPRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMI 82
Query: 65 ASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDD---QTRHVTTADLK 121
A R+GLIPL S V + Y+RDC C + C C V L V + Q VT+ L+
Sbjct: 83 AHRLGLIPLISRNVSKGLRYTRDCDCDEGCYYCMVTLRLKVTFSGNDGEQFMRVTSDMLE 142
Query: 122 --------------------STDARVVPVTSRNRDADMNE-YGETD----DILIVKLRKG 156
S + R++ NRD +M + G+ + ILI K+ KG
Sbjct: 143 VVPSPGGPPPPNPYGPPPELSEEDRII---INNRDPEMGQPIGKGNPTVPPILIAKMGKG 199
Query: 157 QELRLRAYAKKGFGKEHAKWNP 178
QE+ + A KG K HAKW+P
Sbjct: 200 QEIDVLCKAYKGIAKHHAKWSP 221
>gi|58267768|ref|XP_571040.1| RNA polymerase II subunit 3 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227274|gb|AAW43733.1| RNA polymerase II subunit 3, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 377
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 105/204 (51%), Gaps = 31/204 (15%)
Query: 5 NQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFI 64
NQP + + +L + + F + EL+ ANSLRRV +A+ PT+AID V N+T L+DE I
Sbjct: 23 NQPRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMI 82
Query: 65 ASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDD---QTRHVTTADLK 121
A R+GLIPL S V + Y+RDC C + C C V L V + Q VT+ L+
Sbjct: 83 AHRLGLIPLISRNVSKGLRYTRDCDCDEGCYYCMVTLRLKVTFSGNDGEQFMRVTSDMLE 142
Query: 122 --------------------STDARVVPVTSRNRDADMNE-YGETD----DILIVKLRKG 156
S + R++ NRD +M + G+ + ILI K+ KG
Sbjct: 143 VVPSPGGPPPPNPYGPPPELSEEDRII---INNRDPEMGQPIGKGNPTVPPILIAKMGKG 199
Query: 157 QELRLRAYAKKGFGKEHAKWNPTA 180
QE+ + A KG K HAKW+P +
Sbjct: 200 QEIDVLCKAYKGIAKHHAKWSPLS 223
>gi|68070451|ref|XP_677137.1| DNA-directed RNA polymerase II [Plasmodium berghei strain ANKA]
gi|56497133|emb|CAH93597.1| DNA-directed RNA polymerase II, putative [Plasmodium berghei]
Length = 331
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 99/172 (57%), Gaps = 2/172 (1%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I ++ ++F + ++ ++AN+LRR+ ++E PT+AID V + N++ DEFIA RI
Sbjct: 11 IEIKSISKNEMEFTLYNSNAALANALRRIMLSEVPTLAIDIVNVYENTSPFHDEFIAHRI 70
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV- 127
GLIP+ S + R C C + CS C+V++ ++VKC + +V+ D+++ D
Sbjct: 71 GLIPIDSRNIKSYEFRER-CKCKETCSRCTVQYIIEVKCNNANKINVSHYDIEALDHEPN 129
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
+P+ N + + N + I IV L K Q + ++ A KG GK HAKW P
Sbjct: 130 IPMPIPNDNKNNNIEKMENAIPIVTLSKNQTIHMKLTATKGIGKMHAKWIPA 181
>gi|410721684|ref|ZP_11361014.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanobacterium sp. Maddingley MBC34]
gi|410598430|gb|EKQ53003.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanobacterium sp. Maddingley MBC34]
Length = 266
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 97/171 (56%), Gaps = 20/171 (11%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I ++ + F VE ++S+ N+LRR+ + E PT+AI+ V++ N + DE +A R+
Sbjct: 3 IEIKTRENDQLIFTVEGVDVSMVNALRRISMVEVPTLAIETVEILKNDARIFDEALAHRL 62
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+D ++ ++ + DC C CS CS+ L K + + + DLKS D +
Sbjct: 63 GLVPLTTD--LESLVPAEDCDCEGHCSRCSISLILKGK----GPKTLYSGDLKSEDPNLK 116
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
PV D I +VKL++G E+ L A A+ GFGKEHAKW PT
Sbjct: 117 PV--------------LDTIPLVKLKEGDEVELEAIAQLGFGKEHAKWQPT 153
>gi|403414765|emb|CCM01465.1| predicted protein [Fibroporia radiculosa]
Length = 387
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 101/188 (53%), Gaps = 32/188 (17%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I +L + V F +E+ +L+ ANS RRV +A+ PT+A+D V+++ N+TVL DEFIA
Sbjct: 7 PIVRIRELKKDQVNFVLENVDLAFANSFRRVMMADIPTVAVDMVEVQTNTTVLPDEFIAH 66
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+G+IPL S + Y+R L V + T VT+A L +
Sbjct: 67 RLGMIPLVSHNCDQGMRYTR----------------LSVMVEEGVTMDVTSAHLDVSGPH 110
Query: 127 VVPVTSRNRDADMNE--------YGET---DD-----ILIVKLRKGQELRLRAYAKKGFG 170
N +A+ NE +G DD +LI K+RKGQEL++R AKKG
Sbjct: 111 RGQEQHWNEEAEGNEEMAKRGSNFGHPVGKDDPNVPPVLICKIRKGQELKVRCIAKKGIA 170
Query: 171 KEHAKWNP 178
KEHAKW+P
Sbjct: 171 KEHAKWSP 178
>gi|307108317|gb|EFN56557.1| hypothetical protein CHLNCDRAFT_144215 [Chlorella variabilis]
Length = 283
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 98/176 (55%), Gaps = 36/176 (20%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
+P V + LTD+ +F ++ T++S+AN+LRR+ + E PT+AI+ V+ EAN+TVL+DEF+A
Sbjct: 9 EPQVELRKLTDDYCEFVLKGTDVSMANALRRIILVEVPTIAIELVEFEANTTVLNDEFLA 68
Query: 66 SRIGLIPLTSDEVVD-RILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTD 124
R+GLIPL S V D + +Y V + RH
Sbjct: 69 HRLGLIPLVSTRVHDMKSIYEAQVGA----------------WVARRRRHY--------- 103
Query: 125 ARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ PV +R E IL+VK+R+ QEL+LRA A+KG GK+HAKW P A
Sbjct: 104 --IHPVGYHDR--------EDKGILLVKMRRNQELKLRAVARKGTGKDHAKWMPVA 149
>gi|399216931|emb|CCF73618.1| unnamed protein product [Babesia microti strain RI]
Length = 324
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 100/171 (58%), Gaps = 12/171 (7%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
+P + IT LT + +KF + ++++++AN+LRR+ ++E P +AI+ V + N T L DE+IA
Sbjct: 9 KPFIDITQLTVDTIKFTLHNSDVTLANALRRIMLSEIPCLAIEIVTVLENDTPLHDEYIA 68
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+GL+P+ S + + Y C+C D CS+C+V++ L V C + R VT D
Sbjct: 69 HRLGLLPIDSTRISE-FEYRDKCSCSDKCSKCTVDYNLQVTCT-EPFRTVTHLD------ 120
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
++P D + D I IVK+R+ Q + L+ A KG GK HAKW
Sbjct: 121 -IIP---DEYDTPLPLPRSGDGIPIVKIRRDQSIHLKLTATKGIGKLHAKW 167
>gi|392569943|gb|EIW63116.1| hypothetical protein TRAVEDRAFT_17573 [Trametes versicolor
FP-101664 SS1]
Length = 454
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 91/157 (57%), Gaps = 27/157 (17%)
Query: 46 AIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDV 105
AID V++E N+TVL DEFIA R+G+IPL S + + Y+RDCTC C C++E L+V
Sbjct: 83 AIDMVEIETNTTVLPDEFIAHRLGMIPLVSTNCDEAMRYTRDCTCEVRCQYCAIELMLNV 142
Query: 106 KCVDDQTRHVTTADLKSTDARVVPVTSR------NRDADMNE--------YGE------- 144
C + H T D+ S VVP TSR + D+D +E +G
Sbjct: 143 SC--HEGGH--TMDITSDMLEVVP-TSRPGFGGFDADSDGSEELAKRVESFGHPIGQGDP 197
Query: 145 -TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
T ILI K+RKGQELR+R AKKG KEH+KW+P A
Sbjct: 198 STPPILICKIRKGQELRIRCIAKKGIAKEHSKWSPCA 234
>gi|294495898|ref|YP_003542391.1| DNA-directed RNA polymerase, subunit D [Methanohalophilus mahii DSM
5219]
gi|292666897|gb|ADE36746.1| DNA-directed RNA polymerase, subunit D [Methanohalophilus mahii DSM
5219]
Length = 266
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 96/168 (57%), Gaps = 16/168 (9%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I +L+D + +F + D + + AN LRR +A+ PT+AID V + N++VL DE IA R+
Sbjct: 3 IDILELSDRSARFILSDVDAAFANGLRRAMLADVPTLAIDEVNIYNNTSVLYDEQIALRL 62
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
L+PL + + + +C+C + C C+V TL V+ D+ + V + DL S D ++
Sbjct: 63 ALVPLVT--IFNEFTPHEECSCEEGCPACTVSLTLSVEAPMDEDKTVYSGDLVSADPKI- 119
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
+ AD N I +VKL+ GQ+L L AK G+G +HAKW
Sbjct: 120 ------KAADSN-------IAVVKLKGGQQLVLEGIAKMGYGHDHAKW 154
>gi|83286741|ref|XP_730293.1| conjugation stage-specific protein [Plasmodium yoelii yoelii 17XNL]
gi|23489977|gb|EAA21858.1| conjugation stage-specific protein, putative [Plasmodium yoelii
yoelii]
Length = 335
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 99/172 (57%), Gaps = 2/172 (1%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I ++ ++F + ++ ++AN+LRR+ ++E PT+AID V + N++ DEFIA RI
Sbjct: 15 IEIKSISKNEMEFTLYNSNSALANALRRIMLSEVPTLAIDIVNVYENTSPFHDEFIAHRI 74
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV- 127
GLIP+ S + + R C C + CS C+V++ ++VKC + V+ D+++ D
Sbjct: 75 GLIPIDSRNIKNYEFRER-CKCKETCSRCTVQYIIEVKCNNANKIDVSHYDIEALDHEPN 133
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
+P+ N + + N + I I+ L K Q + ++ A KG GK HAKW P
Sbjct: 134 IPMPIPNDNKNNNIEKMENAIPILTLSKNQTIHMKLTATKGIGKMHAKWIPA 185
>gi|330040504|ref|XP_003239937.1| DNA-directed RNA polymerase II [Cryptomonas paramecium]
gi|327206863|gb|AEA39039.1| DNA-directed RNA polymerase II [Cryptomonas paramecium]
Length = 301
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 91/163 (55%), Gaps = 4/163 (2%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD 80
F + + NSLRR + + PT+++D V +E NS++L DEFIA R+ L+PL S + +
Sbjct: 13 FFLNKSNFCYLNSLRRTIMGDMPTLSVDLVYIEKNSSLLHDEFIAHRLSLLPLDSQNIKN 72
Query: 81 RILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNR--DAD 138
+ YS DC C +C CS F L++ ++ +HV + L ++ + + +
Sbjct: 73 -LNYSMDCECNSYCQLCSRVFELNI-IANENLKHVFSTHLLEVSSQKYSLERKPNLLNQH 130
Query: 139 MNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
+ + +I+I KL KGQ ++L AKKG GK HAKWNP +
Sbjct: 131 LKKINFDSEIIITKLTKGQSIKLICVAKKGTGKMHAKWNPVSN 173
>gi|321259555|ref|XP_003194498.1| RNA polymerase II subunit 3 [Cryptococcus gattii WM276]
gi|317460969|gb|ADV22711.1| RNA polymerase II subunit 3, putative [Cryptococcus gattii WM276]
Length = 377
Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 103/202 (50%), Gaps = 31/202 (15%)
Query: 5 NQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFI 64
NQP + + +L + + F + EL+ ANSLRRV +A+ PT+AID V N++ L+DE I
Sbjct: 23 NQPRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFTQNTSPLADEMI 82
Query: 65 ASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDD---QTRHVTTADLK 121
A R+GLIPL S V + Y+RDC C + C C V L V + Q VT+ L+
Sbjct: 83 AHRLGLIPLISRNVSKGLRYTRDCDCDEGCYYCMVTLRLKVTFSGNDGEQFMRVTSDMLE 142
Query: 122 --------------------STDARVVPVTSRNRDADMN-EYGETDD----ILIVKLRKG 156
S + R++ NRD +M G+ + ILI K+ KG
Sbjct: 143 VVPSPGGPPPPNPYGPPPELSEEDRII---INNRDPEMGLPCGKGNPSIPPILIAKMGKG 199
Query: 157 QELRLRAYAKKGFGKEHAKWNP 178
QE+ + A KG K HAKW+P
Sbjct: 200 QEIDVLCKAYKGIAKHHAKWSP 221
>gi|340505295|gb|EGR31641.1| hypothetical protein IMG5_105540 [Ichthyophthirius multifiliis]
Length = 307
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 100/183 (54%), Gaps = 11/183 (6%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
+ ITDL ++ V F +E+ E+++ANSLRR+ +AE T+AI V++ N++ L DE+IA R
Sbjct: 5 KITITDLQEQKVDFILENCEVALANSLRRILLAEVETIAIQNVKVYENTSCLPDEYIAHR 64
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVDF-----CSECSVEFTLDVKCVDDQTRHVTTADLK- 121
+GLIPL S VD Y +C C C C+V F L V+ + T VT+ DLK
Sbjct: 65 VGLIPLISAN-VDNFNYIWNCDCKGSSEGQECDRCAVHFVLKVQNQGNTTMEVTSLDLKE 123
Query: 122 ----STDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
S + V PV + D + I IVKL K Q++ A KG GK H+KW+
Sbjct: 124 KFMNSDEDAVRPVKFYSIVPDQMGRQQEVGIPIVKLSKNQQIHFECEAMKGIGKMHSKWS 183
Query: 178 PTA 180
+
Sbjct: 184 AVS 186
>gi|70945964|ref|XP_742745.1| DNA-directed RNA polymerase II [Plasmodium chabaudi chabaudi]
gi|56521898|emb|CAH80621.1| DNA-directed RNA polymerase II, putative [Plasmodium chabaudi
chabaudi]
Length = 331
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I ++ + F + ++ ++AN+LRR+ ++E PT+A+D V + N++ DEFIA RI
Sbjct: 11 IEIKSISKNEMSFILYNSNTALANALRRIMLSEVPTLAVDIVNVYENTSPFHDEFIAHRI 70
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR-- 126
GLIP+ S + R C C + CS C+V++ ++VKC + V+ D+++ D
Sbjct: 71 GLIPIDSRNIKSYEFRER-CKCKETCSRCTVQYIIEVKCNNANKIDVSHYDIEALDHEPN 129
Query: 127 -VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+P+ + N+ ++++ I IV L K Q L ++ A KG GK HAKW P
Sbjct: 130 IPMPIPNDNKHNNIDKMDTA--IPIVTLSKNQTLHMKLTATKGIGKMHAKWIP 180
>gi|401400700|ref|XP_003880837.1| rna polymerase II, related [Neospora caninum Liverpool]
gi|325115249|emb|CBZ50804.1| rna polymerase II, related [Neospora caninum Liverpool]
Length = 346
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 98/173 (56%), Gaps = 7/173 (4%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ ++ E V F+++ + ++ N+LRR+ I+E PT+AI+ VQ+ N+ V+ DE +A R+
Sbjct: 61 IKFLSVSPERVVFELKGVDAAIPNALRRILISEVPTIAIETVQIWQNTGVVQDEVLAHRL 120
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQ-TRHVTTADLKSTDARV 127
GLIP VVD + +F E ++ +L VKC + H T+ + + D +
Sbjct: 121 GLIPF----VVDPTALNYRQPNQEFTDENALRVSLHVKCTEQSLGPHQTSLPVYARDIKW 176
Query: 128 VPVTSRNRDADMNEYGET--DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
P++ ++A DILI KLR GQE+ L+AY +KG GK HAKW+P
Sbjct: 177 EPMSPSQKEAFAANPPRAVHPDILITKLRPGQEIELKAYLEKGVGKTHAKWSP 229
>gi|392574290|gb|EIW67427.1| hypothetical protein TREMEDRAFT_45370 [Tremella mesenterica DSM
1558]
Length = 361
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 97/195 (49%), Gaps = 25/195 (12%)
Query: 5 NQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFI 64
NQP V + LT + V F + EL++ANS+RRV +A+ PT+ ID V N++ + DE +
Sbjct: 23 NQPRVLVRSLTKDEVNFNLSGMELALANSIRRVMMADVPTVCIDQVLFAQNTSPIPDEML 82
Query: 65 ASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQ------------- 111
A R+G++PL S V + + DC C + C C+V L V +
Sbjct: 83 AHRLGMVPLISRNVSKGLRRTSDCDCDEGCYYCTVTLRLKVSYTHGERGKFMPITSNMLE 142
Query: 112 ---TRHVTTADLKSTDARVVPVTSRNRDADMNE-YGETD----DILIVKLRKGQELRLRA 163
+ DL D +V+ NRD ++ + G+ D IL+ KL +GQE+ L
Sbjct: 143 VVPNPYGPPPDLSPDDQQVI----NNRDPELGQPVGKNDPATPPILLAKLSRGQEIDLTC 198
Query: 164 YAKKGFGKEHAKWNP 178
A G K HAKW+P
Sbjct: 199 KAYSGIAKFHAKWSP 213
>gi|167386476|ref|XP_001737769.1| DNA-directed RNA polymerase subunit D [Entamoeba dispar SAW760]
gi|165899221|gb|EDR25860.1| DNA-directed RNA polymerase subunit D, putative [Entamoeba dispar
SAW760]
Length = 283
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 96/179 (53%), Gaps = 22/179 (12%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y QP + + +E + F +E T+ S+ N LRRV +AETPT+AI V++ ANS+ L DE
Sbjct: 6 YNRQPIITNVECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSSYLCDE 65
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS 122
FIA R+GLIP+ S ++ + D ++ E + +Q VT+ DL S
Sbjct: 66 FIAHRLGLIPIDSTQIHN--FEDTDDAILELKKENN----------SNQLVVVTSNDLVS 113
Query: 123 T-DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D RV PV RN + D I+I +L Q + + Y KKG GK HAKWNPT
Sbjct: 114 IGDKRVAPVNYRN---------DVDPIVITQLGPRQNIHMVCYVKKGTGKFHAKWNPTC 163
>gi|407039476|gb|EKE39676.1| DNA-directed RNA polymerase, alpha subunit, N-terminal domain
containing protein [Entamoeba nuttalli P19]
Length = 283
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 96/179 (53%), Gaps = 22/179 (12%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y QP + + +E + F +E T+ S+ N LRRV +AETPT+AI V++ ANS+ L DE
Sbjct: 6 YNRQPIITNVECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSSYLCDE 65
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS 122
FIA R+GLIP+ S ++ + D ++ E + +Q VT+ DL S
Sbjct: 66 FIAHRLGLIPIDSTQIHN--FEDTDDAILELKEENN----------SNQLVVVTSNDLVS 113
Query: 123 T-DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D RV PV RN + D I+I +L Q + + Y KKG GK HAKWNPT
Sbjct: 114 IGDKRVAPVNYRN---------DVDPIVITQLGPRQNIHMVCYVKKGTGKFHAKWNPTC 163
>gi|405978280|gb|EKC42685.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Crassostrea
gigas]
Length = 472
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 103/183 (56%), Gaps = 17/183 (9%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ + + D+ ++F + + ++AN+ RR+ +AE PTMAI+ V + N++++ DE +A R+
Sbjct: 48 IDMIKMNDDELEFDMVGIDAAIANAFRRILLAEVPTMAIEKVHIYNNTSIIQDEVLAHRL 107
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV-DDQTRHVTTADLKSTDARV 127
GLIP+ +D L+ DF E ++ F L VKC + Q + T D D +V
Sbjct: 108 GLIPIKADPR----LFEYKSEGEDFSPEDTIIFQLKVKCTKNSQAKDTTDPDEMYKDHKV 163
Query: 128 -------VPVTSRN---RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
+P+ ++ ++ D+ DDILI KLR GQE+ +R + KG GK+HAK++
Sbjct: 164 TTKHLKWIPMKGQDTIFKEGDLRPVN--DDILIAKLRPGQEIDIRVFCNKGIGKDHAKFS 221
Query: 178 PTA 180
P A
Sbjct: 222 PVA 224
>gi|312137109|ref|YP_004004446.1| RNA polymerase insert [Methanothermus fervidus DSM 2088]
gi|311224828|gb|ADP77684.1| RNA polymerase insert [Methanothermus fervidus DSM 2088]
Length = 264
Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 23/166 (13%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDE- 77
+KF ++ + S N+LRR + E P +AI+++++ N++ + DE +A R+GLIPL S+E
Sbjct: 13 IKFTIDGVDTSFVNALRRASMTEVPKLAIEYIRIVTNTSRMYDEMLAHRLGLIPLRSNEK 72
Query: 78 VVDRILYSRDCTCVDFCSECSVEFTLDVK--CVDDQTRHVTTADLKSTDARVVPVTSRNR 135
+V +L +C C +C++CSV FTL + CV V + DL +D + PV
Sbjct: 73 IVGNLLMPEECDCDKYCAKCSVSFTLKKQGPCV------VYSGDLVPSDPEIKPV----- 121
Query: 136 DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
++I I+KL + +++ L A A+ G GK+HAKW PT
Sbjct: 122 ---------YENIPIIKLEEDEKIELEAIAQLGLGKKHAKWRPTTA 158
>gi|422293779|gb|EKU21079.1| DNA-directed RNA polymerase II subunit RPB3, partial
[Nannochloropsis gaditana CCMP526]
Length = 121
Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 74/111 (66%), Gaps = 6/111 (5%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MP P + I +L D+ +KF + DT+ SVAN+LRRV IAE PT+AID V E NS+VL+
Sbjct: 1 MPNVRAPKLEILELKDDFIKFILSDTDASVANALRRVMIAEVPTLAIDLVSFEVNSSVLN 60
Query: 61 DEFIASRIGLIPLTS-----DEVVDRILYSRDCTCVDFCSECSVEFTLDVK 106
DE++A R+GLIPL S +V D + RDC C CS CSVE +LDV+
Sbjct: 61 DEYLAHRLGLIPLRSVNPRYKKVADLKDF-RDCDCDSHCSRCSVELSLDVR 110
>gi|300122175|emb|CBK22749.2| unnamed protein product [Blastocystis hominis]
Length = 312
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 99/178 (55%), Gaps = 14/178 (7%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ IT+LT++ +KF + + S+AN LRR+ IAE P++AI V ++ N++VL+D++IA R+
Sbjct: 9 IEITELTEDRLKFTLSGVDTSIANGLRRIMIAEVPSVAIRTVTIKENTSVLADDYIAHRL 68
Query: 69 GLIPL------TSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS 122
GLIP+ +S E+VD S + SV L+ C D+ +VT+ LKS
Sbjct: 69 GLIPIRHLGDDSSTEIVDYFEVSAP------GNRSSVRLELNETCTGDRPLNVTSKHLKS 122
Query: 123 TDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ P + ++ + + E I IV L GQ L + A G GKEHAKW+P
Sbjct: 123 LNPYYAPAHATSQAEALAQNNE--GIRIVSLAPGQTLHVECEAILGVGKEHAKWSPVG 178
>gi|164658784|ref|XP_001730517.1| hypothetical protein MGL_2313 [Malassezia globosa CBS 7966]
gi|159104413|gb|EDP43303.1| hypothetical protein MGL_2313 [Malassezia globosa CBS 7966]
Length = 270
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 84/145 (57%), Gaps = 15/145 (10%)
Query: 50 VQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVD 109
V++ N+TVL DEF+A R+G+IPL S + ++ R+C+C D C CSVE +LD C
Sbjct: 2 VEITINTTVLPDEFLAHRLGMIPLLSMDTAKVLIDQRECSCEDGCDRCSVELSLDALCTS 61
Query: 110 DQ----------TRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD----DILIVKLRK 155
D+ R T A++ S ++ PV R+ D G+ D ++IV+LRK
Sbjct: 62 DRGAMLVTSKDLIRSNTIANMYSDESVFGPVAPRHPDFG-KPVGQDDPNANGVVIVQLRK 120
Query: 156 GQELRLRAYAKKGFGKEHAKWNPTA 180
GQ ++ R A+KGF KEHAKW+P +
Sbjct: 121 GQHIKARCIARKGFAKEHAKWSPVS 145
>gi|449709854|gb|EMD49037.1| DNA-directed RNA polymerase II subunit, putative [Entamoeba
histolytica KU27]
Length = 283
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 96/179 (53%), Gaps = 22/179 (12%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y QP + + +E + F +E T+ S+ N LRRV +AETPT+AI V++ ANS+ L DE
Sbjct: 6 YNRQPIITNVECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSSYLCDE 65
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS 122
FIA R+GLIP+ S ++ + D ++ E + +Q VT+ DL S
Sbjct: 66 FIAHRLGLIPIDSTQIHN--FEDTDDAILELKEENN----------SNQLVVVTSNDLVS 113
Query: 123 T-DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D RV PV +N + D I+I +L Q + + Y KKG GK HAKWNPT
Sbjct: 114 IGDKRVAPVNYKN---------DVDPIVITQLGPRQNIHMVCYVKKGTGKFHAKWNPTC 163
>gi|198427484|ref|XP_002120101.1| PREDICTED: similar to RNA polymerase 1-1 [Ciona intestinalis]
Length = 345
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 107/187 (57%), Gaps = 14/187 (7%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+A+ +++ +L ++++F + + ++AN+ RR+ IAE PTMAI+ V + N+TV+ DE
Sbjct: 42 FADNFCINVIELGPDSMQFDMLGVDAAIANAFRRILIAEVPTMAIEKVYIYNNTTVIQDE 101
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK- 121
+A R+GLIPLT+D ++ R D E ++EF L++KC + + T DL
Sbjct: 102 VLAHRLGLIPLTADA---KLFEYRQGDDADGTPEDTLEFELNIKCTKNLSAPKDTTDLDV 158
Query: 122 --------STDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEH 173
S D + +P+ N+ + DDIL+ KLR G L ++ +A KG G++H
Sbjct: 159 LYKHHKVYSKDIKWIPLG--NQKDLLTVKPVYDDILVAKLRPGHILDVKLHAVKGVGQDH 216
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 217 AKFSPVA 223
>gi|145528814|ref|XP_001450201.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417801|emb|CAK82804.1| unnamed protein product [Paramecium tetraurelia]
Length = 308
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 98/175 (56%), Gaps = 3/175 (1%)
Query: 5 NQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFI 64
+Q + I +L+DE KF E +LS+AN++RRV IAE P MAI +V + N++ LSDEF+
Sbjct: 10 SQHRIEILELSDEKCKFSFEG-DLSIANAIRRVMIAEVPVMAIHFVDIIENTSPLSDEFL 68
Query: 65 ASRIGLIPLTSDEVVDRIL-YSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
A R+GLIPL S ++ + D +D + V FTL K ++D +T+ L+
Sbjct: 69 AQRLGLIPLVSYAADSKMYDWEADADSID-DQKTKVVFTLRQKNLNDAPLEITSQHLEPE 127
Query: 124 DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+V + R G+ I I +L K Q + +R +A KGFGK HAKW P
Sbjct: 128 FGQVGEMAIRPVRMFSPINGKEVGIPITRLGKNQSVHVRCHALKGFGKMHAKWTP 182
>gi|67471071|ref|XP_651491.1| DNA-directed RNA polymerase II subunit [Entamoeba histolytica
HM-1:IMSS]
gi|56468232|gb|EAL46103.1| DNA-directed RNA polymerase II subunit, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 283
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 96/179 (53%), Gaps = 22/179 (12%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y QP + + +E + F +E T+ S+ N LRRV +AETPT+AI V++ ANS+ L DE
Sbjct: 6 YNRQPIITNVECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSSYLCDE 65
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS 122
FIA R+GLIP+ S ++ + D ++ E + +Q VT+ DL S
Sbjct: 66 FIAHRLGLIPIDSTQIHN--FEDTDDAILELKEENN----------SNQLVVVTSNDLVS 113
Query: 123 T-DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D RV PV +N + D I+I +L Q + + Y KKG GK HAKWNPT
Sbjct: 114 IGDKRVAPVNYKN---------DVDPIVITQLGPRQNIHMVCYVKKGTGKFHAKWNPTC 163
>gi|336477128|ref|YP_004616269.1| RNA polymerase insert [Methanosalsum zhilinae DSM 4017]
gi|335930509|gb|AEH61050.1| RNA polymerase insert [Methanosalsum zhilinae DSM 4017]
Length = 264
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 91/173 (52%), Gaps = 20/173 (11%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I +L++ F + D ++ AN +RR +A+ PT+AID V + N++VL DE + R+
Sbjct: 5 IDILELSERTASFVLSDASVAFANGIRRAMLADVPTLAIDEVNVYNNTSVLYDEQLGLRL 64
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
LIPLT++ +D + +C C D C C + TL V + + V + D S D V
Sbjct: 65 ALIPLTAN--MDDYIPKDECNCEDVCPACELSLTLSV----EGPKMVYSGDFVSADPEVR 118
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
P S +I I+ L++GQ+L + A A G+GKEHAKW G
Sbjct: 119 PADS--------------NIPIIDLKEGQKLFIEALAHAGYGKEHAKWQAGVG 157
>gi|408381888|ref|ZP_11179435.1| DNA-directed RNA polymerase subunit D [Methanobacterium formicicum
DSM 3637]
gi|407815336|gb|EKF85921.1| DNA-directed RNA polymerase subunit D [Methanobacterium formicicum
DSM 3637]
Length = 266
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 20/171 (11%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I + + ++ F V+ ++S+ N+LRR+ + E PT+AI+ V+ N + DE +A R+
Sbjct: 3 IEIKNRENNHLIFTVDGVDVSMVNALRRISMVEVPTLAIETVEFLKNDARIFDEALAHRL 62
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PL++D + ++ DC C CS CSV L K + + + DLKS D+ +
Sbjct: 63 GLVPLSTD--TESMVMPEDCDCEGRCSRCSVSLILKGK----GPKTLYSGDLKSEDSNIK 116
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
PV D I +VKL++G+E+ L A A+ G G +HAKW PT
Sbjct: 117 PV--------------LDTIPLVKLKEGEEVELEAIAQLGLGSDHAKWQPT 153
>gi|325958565|ref|YP_004290031.1| DNA-directed RNA polymerase subunit D [Methanobacterium sp. AL-21]
gi|325329997|gb|ADZ09059.1| DNA-directed RNA polymerase subunit D [Methanobacterium sp. AL-21]
Length = 262
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 20/159 (12%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD 80
F +E + + N++RR+ E PTMAI+ V++ N + DE +A R+GL+PL +D ++
Sbjct: 15 FAIEGVDDAFINAIRRISTVEVPTMAIETVEILKNDAKIFDEALAHRLGLVPLKTD--LE 72
Query: 81 RILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMN 140
++ + DC C D+C CSV L K + V + DL+S D VVPV
Sbjct: 73 SMVLASDCDCEDYCPTCSVTLLLKEK----GPKTVYSGDLQSQDPDVVPV---------- 118
Query: 141 EYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
D I ++KL++GQE+ L A AK G G EH+KW PT
Sbjct: 119 ----HDTIPLLKLKEGQEVELIAVAKLGIGLEHSKWQPT 153
>gi|84489668|ref|YP_447900.1| DNA-directed RNA polymerase subunit D [Methanosphaera stadtmanae
DSM 3091]
gi|121731854|sp|Q2NFZ6.1|RPOD_METST RecName: Full=DNA-directed RNA polymerase subunit D
gi|84372987|gb|ABC57257.1| RpoD [Methanosphaera stadtmanae DSM 3091]
Length = 270
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 93/173 (53%), Gaps = 17/173 (9%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
++ I + DE F VE + + N++RR+ + E PT+AI+ V + N + DE +A R
Sbjct: 2 NIEIREKDDERAVFVVEGVDDTFINTIRRICLVEIPTLAIEDVNIYKNDAKMFDEVLAHR 61
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVD-DQTRHVTTADLKSTDAR 126
+GLIP+ +D +D + +C C C C V F L KC + + ++ V + DLKS D
Sbjct: 62 LGLIPIVTD--LDSYVMPSECDCESGCQHCRVSFLLKEKCEEGNDSKIVYSKDLKSDDPA 119
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
V PV D I IV+LR+G+E+ L A A+ G G EHAKW T
Sbjct: 120 VKPV--------------YDTIPIVRLREGEEVELEAIAELGLGSEHAKWQAT 158
>gi|67611563|ref|XP_667165.1| DNA-directed RNA polymerase I [Cryptosporidium hominis TU502]
gi|54658273|gb|EAL36936.1| DNA-directed RNA polymerase I [Cryptosporidium hominis]
Length = 344
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 99/179 (55%), Gaps = 17/179 (9%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ + +L + + F + + S+AN+LRR+ + E PT+AI+ VQ+ N+ V+ DE +A R+
Sbjct: 57 IKVNELKSDYINFDISGIDASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRL 116
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRH---VTTADLKSTDA 125
GLIP+ D + I + + D + SV F L+VKC D H +T+ + S D
Sbjct: 117 GLIPMLIDP--NTIEFRNEDE--DLNEKNSVCFKLNVKCTKDDINHEKGITSKAIYSKDL 172
Query: 126 RVVPVTSRNRDADMNEYGE------TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+P++ R ++G+ TDDILI KLR GQ + Y +K G+ HAKW+P
Sbjct: 173 VWIPLSDNQR----KKFGKSPPKVVTDDILITKLRPGQSIEAILYCEKNIGRVHAKWSP 227
>gi|66356630|ref|XP_625493.1| RNA polymerase III C5 subunit [Cryptosporidium parvum Iowa II]
gi|46226487|gb|EAK87481.1| RNA polymerase III C5 subunit [Cryptosporidium parvum Iowa II]
gi|323509937|dbj|BAJ77861.1| cgd8_300 [Cryptosporidium parvum]
Length = 344
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 99/179 (55%), Gaps = 17/179 (9%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ + +L + + F + + S+AN+LRR+ + E PT+AI+ VQ+ N+ V+ DE +A R+
Sbjct: 57 IKVNELKSDYINFDISGIDASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRL 116
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRH---VTTADLKSTDA 125
GLIP+ D + I + + D + SV F L+VKC D H +T+ + S D
Sbjct: 117 GLIPMLIDP--NTIEFRNEDE--DLNEKNSVCFKLNVKCTKDDINHEKGITSKAIYSKDL 172
Query: 126 RVVPVTSRNRDADMNEYGE------TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+P++ R ++G+ TDDILI KLR GQ + Y +K G+ HAKW+P
Sbjct: 173 VWIPLSDNQR----KKFGKTPPKVVTDDILITKLRPGQSIEAILYCEKNIGRVHAKWSP 227
>gi|284162138|ref|YP_003400761.1| RNA polymerase insert [Archaeoglobus profundus DSM 5631]
gi|284012135|gb|ADB58088.1| RNA polymerase insert [Archaeoglobus profundus DSM 5631]
Length = 261
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 94/174 (54%), Gaps = 21/174 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I + +D V+F + + +++ANS RR + PTMA+D+V N++ L DE IA RI
Sbjct: 3 IEILEESDLKVRFILHNAPIALANSFRRAMKSLVPTMAVDYVVFYMNTSFLYDEIIAHRI 62
Query: 69 GLIPLTSDEVVDRILYSRDCTC-VDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
GLIP+ +D ++R C C + C C V F L+V + + V + DL S D +
Sbjct: 63 GLIPIKTD--LERFNMPDKCVCGGEGCPNCQVSFRLNV----EGPKVVYSGDLISEDPEI 116
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
PV D+I IV+L +GQ+L + A A+ G GKEHAK+ P +
Sbjct: 117 KPV--------------YDNIPIVELYEGQQLMIEAVARLGTGKEHAKYQPVSA 156
>gi|124486064|ref|YP_001030680.1| DNA-directed RNA polymerase subunit D [Methanocorpusculum labreanum
Z]
gi|124363605|gb|ABN07413.1| DNA-directed RNA polymerase, subunit D [Methanocorpusculum
labreanum Z]
Length = 275
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 95/167 (56%), Gaps = 21/167 (12%)
Query: 14 LTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPL 73
L D +F + + AN+LRR I E PT+AI+ +++ N++VL DE +A R+GLIP+
Sbjct: 8 LDDSVARFTIHGATPAFANALRRSMIGEVPTLAIEDIRIYDNTSVLFDEMLAHRLGLIPI 67
Query: 74 TSDEVVDRILYSRDCTC-VDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTS 132
+D + + + +C+C + C C+V FTL V + + VT+ DL S D VVPV
Sbjct: 68 KTD--LSQYVPRSECSCGGEGCPHCTVMFTLSV----EGPKMVTSGDLISMDENVVPV-- 119
Query: 133 RNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
++I IVKL + Q++ L A A+ +GKEHAKW PT
Sbjct: 120 ------------HNNIPIVKLWENQKVVLEAVAEVNYGKEHAKWQPT 154
>gi|407832302|gb|EKF98383.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
cruzi]
Length = 365
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 89/166 (53%), Gaps = 14/166 (8%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E ++FQ+ + + S AN LRRV +AE P + I+ V + N++VL DE IA RIGL+PL S
Sbjct: 45 ETLEFQLAEVDNSFANGLRRVMLAEVPVLGIESVTIIQNTSVLPDEMIAHRIGLVPLYSM 104
Query: 77 EVVDRILYSRDCTC-VDFCSECSVEFTLDVKCVDDQ-TRHVTTADLKSTDARVVPVTSRN 134
+ R+ Y+RDC C C EC + L V C ++ + V LK D V PV+S
Sbjct: 105 K-ARRMQYARDCLCGGSGCGECQINGELKVSCPSNKHSLQVFMDSLKIDDEEVYPVSSEE 163
Query: 135 RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
R + ++ L + QEL LR +K K HAK+ P A
Sbjct: 164 R-----------GVWLLTLGRSQELNLRVVIRKNIAKTHAKFMPVA 198
>gi|385805508|ref|YP_005841906.1| RNA polymerase, insert [Fervidicoccus fontis Kam940]
gi|383795371|gb|AFH42454.1| RNA polymerase, insert [Fervidicoccus fontis Kam940]
Length = 281
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 90/168 (53%), Gaps = 14/168 (8%)
Query: 13 DLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIP 72
++ + ++ +ED V SLRR+ I E PTMA+D V + N++VL DE +A R+G+IP
Sbjct: 7 NIKENFLELYIEDAPQEVLTSLRRIIIEEVPTMAVDNVLILENNSVLHDEVLAHRLGMIP 66
Query: 73 LTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTS 132
L SD +++ +C C C L+V+ D+ + V T +LKS D + PV
Sbjct: 67 LYSDRALEKYRAPEECAECTNCENCFDILHLEVENKDEDKKVVYTGELKSEDPDIYPVFK 126
Query: 133 RNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
DI IV L KGQ++ L A A+ G GKEH KW+P +
Sbjct: 127 --------------DIPIVVLGKGQKIVLEAEARLGRGKEHIKWSPVS 160
>gi|389593679|ref|XP_003722088.1| DNA-directed RNA polymerase I-like protein [Leishmania major strain
Friedlin]
gi|321438586|emb|CBZ12345.1| DNA-directed RNA polymerase I-like protein [Leishmania major strain
Friedlin]
Length = 337
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 97/167 (58%), Gaps = 15/167 (8%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E + FQ+ + + S AN+LRRV +AE PT+AI++V + N++VL DE IA R+GL+PL S+
Sbjct: 17 ETLTFQLSEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRLGLVPLFSE 76
Query: 77 EVVDRILYSRDCTC-VDFCSECSVEFTLDVKCVDDQ-TRHVTTAD-LKSTDARVVPVTSR 133
+ R+ + +DC C C +C + +L V+C +Q ++ V D L+ DA V PV++
Sbjct: 77 K-AKRLNFPQDCGCGGSGCPDCQITGSLKVQCPPNQHSKQVFIGDSLQIDDAEVYPVSA- 134
Query: 134 NRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
E+G I +V L + Q L L +K K HAK+ P A
Sbjct: 135 ------EEHG----IWLVTLGRSQVLDLHVVIRKNIAKTHAKFMPVA 171
>gi|146092793|ref|XP_001466520.1| DNA-directed RNA polymerase I-like protein [Leishmania infantum
JPCM5]
gi|398018535|ref|XP_003862432.1| DNA-directed RNA polymerase I-like protein [Leishmania donovani]
gi|134070883|emb|CAM69559.1| DNA-directed RNA polymerase I-like protein [Leishmania infantum
JPCM5]
gi|322500662|emb|CBZ35739.1| DNA-directed RNA polymerase I-like protein [Leishmania donovani]
Length = 337
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 97/167 (58%), Gaps = 15/167 (8%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E + FQ+ + + S AN+LRRV +AE PT+AI++V + N++VL DE IA R+GL+PL S+
Sbjct: 17 ETLTFQLSEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRLGLVPLFSE 76
Query: 77 EVVDRILYSRDCTC-VDFCSECSVEFTLDVKCVDDQ-TRHVTTAD-LKSTDARVVPVTSR 133
+ R+ + +DC C C +C + +L V+C +Q ++ V D L+ DA V PV++
Sbjct: 77 K-AKRLNFPQDCGCGGSGCPDCQITGSLKVQCPPNQHSKQVFIGDSLQIDDAEVYPVSA- 134
Query: 134 NRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
E+G I +V L + Q L L +K K HAK+ P A
Sbjct: 135 ------EEHG----IWLVTLGRSQVLDLHVVIRKNIAKTHAKFMPVA 171
>gi|407410818|gb|EKF33119.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
cruzi marinkellei]
Length = 337
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 89/166 (53%), Gaps = 14/166 (8%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E ++FQ+ + + S AN LRRV +AE P + I+ V + N++VL DE IA RIGL+PL S
Sbjct: 17 ETLEFQLAEVDNSFANGLRRVMLAEVPVLGIESVTIIQNTSVLPDEMIAHRIGLVPLYSM 76
Query: 77 EVVDRILYSRDCTC-VDFCSECSVEFTLDVKCVDDQ-TRHVTTADLKSTDARVVPVTSRN 134
+ R+ Y+RDC C C EC + L V C ++ + V LK D V PV+S
Sbjct: 77 K-ARRMQYARDCLCGGSGCGECQINGELKVSCPSNKHSLQVFMDSLKIDDEEVYPVSSEE 135
Query: 135 RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
R + ++ L + QEL LR +K K HAK+ P A
Sbjct: 136 R-----------GVWLLTLGRSQELNLRVVIRKNIAKTHAKFMPVA 170
>gi|71663692|ref|XP_818836.1| DNA-directed RNA polymerase II subunit 3 [Trypanosoma cruzi strain
CL Brener]
gi|70884108|gb|EAN96985.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
cruzi]
Length = 363
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 89/166 (53%), Gaps = 14/166 (8%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E ++FQ+ + + S AN LRRV +AE P + I+ V + N++VL DE IA RIGL+PL S
Sbjct: 43 ETLEFQLAEVDNSFANGLRRVMLAEVPVLGIESVTIIQNTSVLPDEMIAHRIGLVPLYSM 102
Query: 77 EVVDRILYSRDCTC-VDFCSECSVEFTLDVKCVDDQ-TRHVTTADLKSTDARVVPVTSRN 134
+ R+ Y+RDC C C EC + L V C ++ + V LK D V PV+S
Sbjct: 103 K-ARRMQYARDCLCGGSGCGECQINGELKVSCPSNKHSLQVFMDSLKIDDEEVYPVSS-- 159
Query: 135 RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
E + ++ L + QEL LR +K K HAK+ P A
Sbjct: 160 ---------EEHGVWLLTLGRSQELNLRVVIRKNIAKTHAKFMPVA 196
>gi|237839019|ref|XP_002368807.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative
[Toxoplasma gondii ME49]
gi|211966471|gb|EEB01667.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative
[Toxoplasma gondii ME49]
gi|221502105|gb|EEE27849.1| DNA-directed RNA polymerase I, putative [Toxoplasma gondii VEG]
Length = 346
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 99/179 (55%), Gaps = 7/179 (3%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ + S+ ++ E V F+++ + ++ N+LRR+ I+E PT+AI+ VQ+ N+ V+ DE
Sbjct: 55 FCERTSLKFLSVSPERVVFELKGVDAAIPNALRRILISEVPTVAIETVQIWQNTGVVQDE 114
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQ-TRHVTTADLK 121
+A R+GLIP +VD + + E ++ +L VKC + H T+ +
Sbjct: 115 VLAHRLGLIPF----IVDPTALNYRQPNQEVTDENALRVSLHVKCTEQSLGPHQTSLPVY 170
Query: 122 STDARVVPVTSRNRDADMNEYGET--DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+ + P++ ++A DILI KLR GQE+ L+AY +KG GK HAKW+P
Sbjct: 171 AKHIKWEPMSPSQKEAFAANPPRAVHPDILITKLRPGQEIELKAYLEKGVGKTHAKWSP 229
>gi|449705384|gb|EMD45440.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative,
partial [Entamoeba histolytica KU27]
Length = 249
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 96/176 (54%), Gaps = 3/176 (1%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
QP + + E V+F V ++SVAN LRR+ IAE PTMAI+ V LE NS+ + DE +
Sbjct: 4 QPRIVKISESPEKVEFDVMGIDVSVANGLRRIMIAEVPTMAIEMVVLEDNSSAIPDEMLC 63
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+GLIP+ +D + + +D D E ++ FTLDV C D ++ + S+D
Sbjct: 64 HRLGLIPILADP--RKFKFPKDRHFTDPTEEDTIVFTLDVTCTLDSAKNPVNNKVYSSDL 121
Query: 126 RVVPVTSRNRD-ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
P + AD DDILI +L+ Q ++ + + KG G++HAK++P
Sbjct: 122 IWEPQGEQETTFADCPIKPVFDDILIAELQPHQHIKCKLFCCKGIGQDHAKFSPVC 177
>gi|407038499|gb|EKE39159.1| DNA-directed RNA polymerase, alpha subunit, N-terminal domain
containing protein [Entamoeba nuttalli P19]
Length = 259
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 96/176 (54%), Gaps = 3/176 (1%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
QP + + E V+F V ++SVAN LRR+ IAE PTMAI+ V LE NS+ + DE +
Sbjct: 4 QPRIVKISESPEKVEFDVMGIDVSVANGLRRIMIAEVPTMAIEMVVLEDNSSAIPDEMLC 63
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+GLIP+ +D + + +D D E ++ FTLDV C D ++ + S+D
Sbjct: 64 HRLGLIPILADP--RKFKFPKDRHFTDPTEEDTIVFTLDVTCTLDSAKNPVNNKVYSSDL 121
Query: 126 RVVPVTSRNRD-ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
P + AD DDILI +L+ Q ++ + + KG G++HAK++P
Sbjct: 122 IWEPQGEQETTFADCPIKPVFDDILIAELQPHQHIKCKLFCCKGIGQDHAKFSPVC 177
>gi|124027415|ref|YP_001012735.1| DNA-directed RNA polymerase subunit D [Hyperthermus butylicus DSM
5456]
gi|123978109|gb|ABM80390.1| DNA-directed RNA polymerase subunit D [Hyperthermus butylicus DSM
5456]
Length = 281
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 15/171 (8%)
Query: 11 ITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGL 70
I D ++ VE L + N++RR ++ P MA+D V++ N+TVL DE IA R+GL
Sbjct: 6 ILDKDRLTIRLYVEGFGLPLVNAIRRAAYSDVPVMAVDVVEVFENNTVLYDEIIAHRLGL 65
Query: 71 IPLTSDEVVDRILYSRDCTCVDFC-SECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVP 129
IPLTS E + + +C + C V L+V+ + R V + DL+++D V P
Sbjct: 66 IPLTSKEALQKYKRPEECEKAELGDPSCYVVLRLEVETGPREERIVYSGDLETSDPDVRP 125
Query: 130 VTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V D++ IV + Q LRL+AYA+ G+G+EHAKW P +
Sbjct: 126 V--------------YDNMPIVVMAPDQRLRLQAYARLGYGREHAKWMPVS 162
>gi|401416108|ref|XP_003872549.1| DNA-directed RNA polymerase I-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488773|emb|CBZ24020.1| DNA-directed RNA polymerase I-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 337
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 94/167 (56%), Gaps = 15/167 (8%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E + FQ+ + + S AN+LRRV +AE PT+AI++V + N++VL DE IA R+GL+PL S
Sbjct: 17 ETLTFQLNEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRLGLVPLFSG 76
Query: 77 EVVDRILYSRDCTC-VDFCSECSVEFTLDVKCVDDQ-TRHVTTAD-LKSTDARVVPVTSR 133
+ R+ + +DC C C +C + +L V+C +Q ++ V D L+ DA V PV++
Sbjct: 77 K-AKRLNFPQDCGCGGSGCPDCQITGSLKVQCPPNQHSKQVFIGDSLQIDDAEVYPVSA- 134
Query: 134 NRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
E I +V L + Q L L +K K HAK+ P A
Sbjct: 135 ----------EEHGIWLVTLGRSQVLDLHVVIRKNIAKTHAKFMPVA 171
>gi|383319963|ref|YP_005380804.1| DNA-directed RNA polymerase subunit D [Methanocella conradii HZ254]
gi|379321333|gb|AFD00286.1| DNA-directed RNA polymerase, subunit D [Methanocella conradii
HZ254]
Length = 262
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 95/171 (55%), Gaps = 19/171 (11%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I DL D +F + + +N+LRR +A+ P MAID+V + N++V+ DE +A R+
Sbjct: 3 LEILDLGDRKARFILSGVTPAFSNALRRAMLADIPKMAIDYVDIYDNTSVMFDEMLAHRL 62
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIPL ++ + ++ DC C+ C V FTL + V + DLKS+D V
Sbjct: 63 GLIPLKTNLNMYKLKEECDCKGAG-CALCQVTFTLSA----EGPCMVHSRDLKSSDPETV 117
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
P AD D+I I++L++GQ+L L A A+ G GKEHAK+ P
Sbjct: 118 P-------AD-------DNIPIIELKEGQKLVLTAVARLGHGKEHAKFQPV 154
>gi|347523607|ref|YP_004781177.1| DNA-directed RNA polymerase [Pyrolobus fumarii 1A]
gi|343460489|gb|AEM38925.1| DNA-directed RNA polymerase [Pyrolobus fumarii 1A]
Length = 293
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 88/171 (51%), Gaps = 23/171 (13%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
++ +E L+ N+LRR P MAID+V+ N+TVL DE +A R+GLIPL S E
Sbjct: 9 LRVLIEGAPLAFVNALRRAAYTMVPVMAIDYVEFIDNNTVLYDEILAHRLGLIPLDSREA 68
Query: 79 VDRILYSRDC--TCVDFCS-------ECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVP 129
+ + +C+D C TL+V+ D+ R V + DL+S+D V P
Sbjct: 69 IKSYKKPEEFQESCIDSSGVPKFDEPGCFATLTLEVETGVDEVRMVYSGDLQSSDPTVKP 128
Query: 130 VTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V +I IV + GQ L +RAYA+ G+GKEHAKW P +
Sbjct: 129 VYP--------------NIPIVLMAPGQRLHVRAYARLGYGKEHAKWFPVS 165
>gi|333987645|ref|YP_004520252.1| DNA-directed RNA polymerase subunit D [Methanobacterium sp. SWAN-1]
gi|333825789|gb|AEG18451.1| DNA-directed RNA polymerase subunit D [Methanobacterium sp. SWAN-1]
Length = 278
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 96/181 (53%), Gaps = 25/181 (13%)
Query: 4 ANQPSVHITDLTDEN-----VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTV 58
+N+ V D+T +N + F VE ++ N++RR+ E PT+AI+ V + N
Sbjct: 6 SNKQEVSKMDVTIKNKDDNLLVFTVEGVDVPFINAIRRICTVEVPTLAIEDVDIYKNDAK 65
Query: 59 LSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTA 118
+ DE +A R+GLIPLT+D ++ ++ + +C C D C CSV L K + V +
Sbjct: 66 IFDEALAHRLGLIPLTTD--LESMVLASECDCEDHCPRCSVSLLLKEK----GPKTVYSK 119
Query: 119 DLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
DLKS D ++ P D I I+KL+ G+E+ L A A+ G G EHAKW P
Sbjct: 120 DLKSQDPQLKPT--------------YDTIPIMKLKDGEEVELEAIAQLGIGLEHAKWQP 165
Query: 179 T 179
T
Sbjct: 166 T 166
>gi|167387776|ref|XP_001738304.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Entamoeba
dispar SAW760]
gi|165898594|gb|EDR25427.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative
[Entamoeba dispar SAW760]
Length = 291
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 95/176 (53%), Gaps = 3/176 (1%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
QP + + E V+F ++SVAN LRR+ IAE PTMAI+ V LE NS+ + DE +
Sbjct: 4 QPRIIKISESPEKVEFDAMGIDVSVANGLRRIMIAEVPTMAIEMVVLEDNSSAIPDEMLC 63
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+GLIP+ +D + + +D D E ++ FTLDV C D ++ + S+D
Sbjct: 64 HRLGLIPILADP--RKFKFPKDRHFTDPTEEDTIVFTLDVTCTLDSAKNPVNNKVYSSDL 121
Query: 126 RVVPVTSRNRD-ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
P + AD DDILI +L+ Q ++ + + KG G++HAK++P
Sbjct: 122 IWEPQGEQETTFADCPIKPVFDDILIAELQPHQHIKCKLFCCKGIGQDHAKFSPVC 177
>gi|154340820|ref|XP_001566363.1| DNA-directed RNA polymerase I-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063686|emb|CAM39871.1| DNA-directed RNA polymerase I-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 337
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 15/167 (8%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E + FQ+ + + S AN+LRRV +AE PT+AI++V + N++VL DE IA R+GL+PL S+
Sbjct: 17 ETLTFQLNEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRLGLVPLFSE 76
Query: 77 EVVDRILYSRDCTC-VDFCSECSVEFTLDVKCVDDQ-TRHVTTAD-LKSTDARVVPVTSR 133
+ R+ + +DC C C +C + +L V+C +Q ++ V D L+ A V PV++
Sbjct: 77 K-AKRLNFPQDCGCGGSGCPDCQITGSLKVQCPPNQHSKQVFIGDSLQIDSAEVYPVSA- 134
Query: 134 NRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
E I +V L + Q L L +K K HAK+ P A
Sbjct: 135 ----------EEHGIWLVTLGRSQVLDLNVLIRKNIAKTHAKFMPVA 171
>gi|348665187|gb|EGZ05020.1| hypothetical protein PHYSODRAFT_356217 [Phytophthora sojae]
Length = 343
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 100/182 (54%), Gaps = 12/182 (6%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
Q V I LTDE + F + + ++AN+LRR+ +AE PTMAI+ V + NS+++ DE +A
Sbjct: 35 QVKVKIQSLTDEEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLA 94
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKC------VDDQTRHVTTAD 119
R+GL+PL D D + E ++ F LDV C D T+ + ++
Sbjct: 95 HRLGLVPLNVDP--REFQAFPDNEEAEATDENTIVFKLDVTCKFDPEHPKDPTKAIHSS- 151
Query: 120 LKSTDARVVPVTSR-NRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+ S D VP ++ R + E DILI KLR GQ + L A+ +KG GK+HAK++P
Sbjct: 152 VYSRDLEWVPQGNQEERFGSIRPVHE--DILIAKLRPGQSIALEAHCRKGVGKDHAKFSP 209
Query: 179 TA 180
A
Sbjct: 210 VA 211
>gi|15219773|ref|NP_176261.1| RNA polymerase I subunit 43 [Arabidopsis thaliana]
gi|14423464|gb|AAK62414.1|AF386969_1 RNA polymerase subunit (isoform B) [Arabidopsis thaliana]
gi|514324|gb|AAB00529.1| RNA polymerase subunit [Arabidopsis thaliana]
gi|2462755|gb|AAB71974.1| RNA polymerase subunit (isoform B) [Arabidopsis thaliana]
gi|24899667|gb|AAN65048.1| RNA polymerase subunit (isoform B) [Arabidopsis thaliana]
gi|332195585|gb|AEE33706.1| RNA polymerase I subunit 43 [Arabidopsis thaliana]
gi|1586550|prf||2204246B RNA polymerase
Length = 385
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 100/193 (51%), Gaps = 25/193 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + LT+ ++ F + +AN+ RR+ +AE P+MAI+ V + N++V+ DE +A R+
Sbjct: 83 VDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHRL 142
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV-DDQTRHVTTADLK------ 121
GLIP+ +D + L D + ++ F L VKC+ D R V T++LK
Sbjct: 143 GLIPIAADPRLFEYLSENDQP----NEKNTIVFKLHVKCLKGDPRRKVLTSELKWLPNGS 198
Query: 122 -----STDARVVP--VTSRNRDAD-MNEYGET------DDILIVKLRKGQELRLRAYAKK 167
S + P TS N D E+ E DILI KL GQE+ L A+A K
Sbjct: 199 ELIKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAHAVK 258
Query: 168 GFGKEHAKWNPTA 180
G GK HAKW+P A
Sbjct: 259 GIGKTHAKWSPVA 271
>gi|435852104|ref|YP_007313690.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanomethylovorans hollandica DSM 15978]
gi|433662734|gb|AGB50160.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanomethylovorans hollandica DSM 15978]
Length = 264
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 94/168 (55%), Gaps = 20/168 (11%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I +L+D + KF + +T + AN +RR +A+ PT+AI V + N++VL DE + R+
Sbjct: 5 VDILELSDRSAKFVLSNTSAAFANGIRRASLADVPTIAITEVNIYNNTSVLYDEQLGLRM 64
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
LIPLTS+ ++ + +C+C DFC C V TL + + V + DL S+D +V
Sbjct: 65 ALIPLTSN--MEDFVPKEECSCGDFCPACQVSLTLSA----EGPKIVYSQDLVSSDDKVQ 118
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
P AD N I I LR+GQ++ L A A G+G +H++W
Sbjct: 119 P-------ADPN-------IPIADLREGQKIVLEAIAHMGYGNKHSRW 152
>gi|443702676|gb|ELU00597.1| hypothetical protein CAPTEDRAFT_171865 [Capitella teleta]
Length = 349
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 101/181 (55%), Gaps = 12/181 (6%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+++ LTD +++F + + S+AN+ RR+ ++E PTMAID V++ N++++ DE A R+
Sbjct: 47 INVVSLTDTDIEFDMVGLDCSLANAFRRILLSEVPTMAIDKVKIYNNTSIIQDEVFAHRL 106
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV--DDQTRHVTTAD------- 119
GLIP+ +D R+ R + E ++ F L VKC + T H T D
Sbjct: 107 GLIPIKADP---RMFEYRSEDNEEGTPEDTLVFELKVKCTMNKNATEHATDPDELFINHK 163
Query: 120 LKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
+ + D + +P ++ + DDILI KLR GQE+ + + KG G++HAK++P
Sbjct: 164 VTTRDMKWIPKGNQQELFKDSICPVQDDILIAKLRPGQEIDIEMHCVKGLGQDHAKFSPV 223
Query: 180 A 180
A
Sbjct: 224 A 224
>gi|209876648|ref|XP_002139766.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Cryptosporidium muris RN66]
gi|209555372|gb|EEA05417.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative
[Cryptosporidium muris RN66]
Length = 351
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 15/180 (8%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I +LT + + F + + +VAN+LRR+ + E PT+AI+ VQ+ NS V+ DE +A R+
Sbjct: 66 IKINELTSDYINFDLIGVDAAVANALRRILLVEVPTVAIETVQIYQNSGVIQDEVLAHRL 125
Query: 69 GLIPLTSD------EVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS 122
GLIP D D+ L ++ C C EC+ D+ D +T+ + S
Sbjct: 126 GLIPFNIDLDLIDFRAEDQDLNEKNSVCFKLCVECN---KYDI----DDKNGITSKAIYS 178
Query: 123 TDARVVPVTSRNRDADMNEYGET--DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D VP++ + + DILI KLR GQ + Y +KG GK HAKW+P +
Sbjct: 179 KDLIWVPMSESQKQIFEKKPPSVVYPDILITKLRPGQVIEAILYCEKGIGKTHAKWSPVS 238
>gi|341582027|ref|YP_004762519.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. 4557]
gi|340809685|gb|AEK72842.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. 4557]
Length = 260
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 92/173 (53%), Gaps = 25/173 (14%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
+P I + ++++KF VE ++ AN+LRR +A+ PT A+D V+ N + L DE IA
Sbjct: 2 EPKFQILEKREDSIKFIVEGVDVPFANALRRTILADVPTFAVDEVEFFENDSALFDEIIA 61
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+G+IPLT+ +R +S D +D E+T+ + + V + DLKS+D
Sbjct: 62 HRVGMIPLTTPH--ER--FSLDSLELD-------EYTVTLSLEAEGPGMVYSGDLKSSDE 110
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
V P +I IVKL +GQ L AYAK G GK+HAKW P
Sbjct: 111 GVKPANP--------------NIPIVKLAEGQRLTFNAYAKLGRGKDHAKWQP 149
>gi|91772121|ref|YP_564813.1| DNA-directed RNA polymerase subunit D [Methanococcoides burtonii
DSM 6242]
gi|91711136|gb|ABE51063.1| DNA-directed RNA polymerase subunit D [Methanococcoides burtonii
DSM 6242]
Length = 267
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 93/169 (55%), Gaps = 17/169 (10%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I +L+D + KF + +T + AN +RR +A+ PT+AID V + N++VL DE +A R+
Sbjct: 3 IDILELSDRSAKFILSNTTAAFANGVRRAMLADVPTLAIDDVNIYNNTSVLYDEQLALRL 62
Query: 69 GLIPLTSDEVVDRILYSRDCTC-VDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
GLIPLT+ D + CTC C C+V TL V+ + V + D+ S+D V
Sbjct: 63 GLIPLTTS--FDDFVPQDKCTCDGAGCPACTVSLTLSVETDESGQTIVHSGDIVSSDPNV 120
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
P AD N I I+ LR GQ++ L A A G+G +HAKW
Sbjct: 121 QP-------ADKN-------IPIIDLRVGQKVVLEAIAHMGYGNKHAKW 155
>gi|392560708|gb|EIW53890.1| insert subdomain of RNA polymerase alpha subunit [Trametes
versicolor FP-101664 SS1]
Length = 366
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 94/174 (54%), Gaps = 5/174 (2%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
+V + L+ +++F + + S+AN+ RR+ IAE PT+AI+ V + N++V+ DE +A R
Sbjct: 56 TVSVKRLSQRSIEFDLVGVDASIANAFRRIMIAEVPTIAIEDVFVWNNTSVIHDEILAQR 115
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
+GLIPL VD L+S ++ F LD++C + + S D +
Sbjct: 116 LGLIPLN----VDPALFSPRLPGDIPYDRNTLVFQLDIECSRGAKGAIINEYVTSGDLKW 171
Query: 128 VPVTSRNR-DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
VP + D+ DI+I KLR GQ + + +A KG GKEHAKW+P A
Sbjct: 172 VPQGEQESVFGDLVPTATNKDIVIAKLRPGQVINVELHAIKGVGKEHAKWSPVA 225
>gi|389852940|ref|YP_006355174.1| DNA-directed RNA polymerase subunit D [Pyrococcus sp. ST04]
gi|388250246|gb|AFK23099.1| DNA-directed RNA polymerase subunit D [Pyrococcus sp. ST04]
Length = 259
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 91/170 (53%), Gaps = 25/170 (14%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I + D+++KF ++ ++ AN+LRR +AE PT A+D V+ N + L DE IA R+
Sbjct: 4 IEILEKRDDSIKFILKGVHVAFANALRRTILAEVPTFAVDEVEFYENDSALFDEIIAHRL 63
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
+IPLT+ VDR + D +D ++T+ + + V + DLKS D V
Sbjct: 64 AMIPLTTP--VDR--FELDALELD-------DYTVTLSLEAEGPGIVYSGDLKSDDPDVR 112
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
PVT DI IVKL KGQ L AYAK G GK+HAKW P
Sbjct: 113 PVTP--------------DIPIVKLAKGQRLVFNAYAKLGRGKDHAKWQP 148
>gi|302774338|ref|XP_002970586.1| hypothetical protein SELMODRAFT_231624 [Selaginella moellendorffii]
gi|300162102|gb|EFJ28716.1| hypothetical protein SELMODRAFT_231624 [Selaginella moellendorffii]
Length = 353
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 24/190 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I LT+++++F + + ++AN+ RR+ IAE PTMAI+ V ++ N++V+ DE A R+
Sbjct: 58 VEIKSLTEDDLEFDMIGIDAALANAFRRILIAEVPTMAIEKVLIKDNTSVIQDEVFAHRL 117
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSE-CSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
GL+P+ +D R+ + T D +E ++ F+L+VKC R + A +KS +
Sbjct: 118 GLVPIKADP---RLFNEK--TNEDVATEKNTIVFSLEVKCTRQGDRMI-NASVKSDQLKW 171
Query: 128 VPVTSR----------------NRDADMNEYG-ETDDILIVKLRKGQELRLRAYAKKGFG 170
+P S +D N+ DIL+ KLR GQ + L A+A KG G
Sbjct: 172 LPGGSLYSMTDDSNKTYTSFSCRQDTIQNDIAPRYKDILLAKLRPGQAIELEAHAVKGIG 231
Query: 171 KEHAKWNPTA 180
K HAKW+P A
Sbjct: 232 KTHAKWSPVA 241
>gi|302770012|ref|XP_002968425.1| hypothetical protein SELMODRAFT_409226 [Selaginella moellendorffii]
gi|300164069|gb|EFJ30679.1| hypothetical protein SELMODRAFT_409226 [Selaginella moellendorffii]
Length = 352
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 24/190 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I LT+++++F + + ++AN+ RR+ IAE PTMAI+ V ++ N++V+ DE A R+
Sbjct: 57 VEIKSLTEDDLEFDMIGIDAALANAFRRILIAEVPTMAIEKVLIKDNTSVIQDEVFAHRL 116
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSE-CSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
GL+P+ +D R+ + T D +E ++ F+L+VKC R + A +KS +
Sbjct: 117 GLVPIKADP---RLFNEK--TNEDVATEKNTIVFSLEVKCTRQGDRMI-NASVKSDQLKW 170
Query: 128 VPVTSR----------------NRDADMNEYG-ETDDILIVKLRKGQELRLRAYAKKGFG 170
+P S +D N+ DIL+ KLR GQ + L A+A KG G
Sbjct: 171 LPGGSLYSMTDDSNKTYTSFSCRQDTIQNDIAPRYKDILLAKLRPGQAIELEAHAVKGIG 230
Query: 171 KEHAKWNPTA 180
K HAKW+P A
Sbjct: 231 KTHAKWSPVA 240
>gi|406698967|gb|EKD02188.1| RNA polymerase II subunit 3 [Trichosporon asahii var. asahii CBS
8904]
Length = 378
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 98/198 (49%), Gaps = 24/198 (12%)
Query: 5 NQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFI 64
NQP++ + +L + F + +++ ANSLRR +A+ PT+AID V N++ + DE +
Sbjct: 24 NQPNILVRNLNRDETTFHLSGVDMAYANSLRRTMMADVPTLAIDQVSFYQNTSPIPDEML 83
Query: 65 ASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQ---TRHVTTADLK 121
A R+G++PL S +V + Y+RDC C + C C V L V V+ + VT+ L+
Sbjct: 84 AHRLGMVPLISRDVGKGLRYTRDCDCDEGCYYCMVTLRLKVSAVNREYGSPMAVTSDMLE 143
Query: 122 STDARVVPVTSR-NRDADMNE----------------YGETD----DILIVKLRKGQELR 160
+ P S D+ E G+ D I + ++ +GQE+
Sbjct: 144 VIPSPNTPQQSPYGPPPDIGEEERELIAHHDPELGVPVGKGDPTASPIQLARISRGQEIE 203
Query: 161 LRAYAKKGFGKEHAKWNP 178
+ A KG K HAKW+P
Sbjct: 204 VVCKAYKGIAKHHAKWSP 221
>gi|401889280|gb|EJT53216.1| RNA polymerase II subunit 3 [Trichosporon asahii var. asahii CBS
2479]
Length = 378
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 98/198 (49%), Gaps = 24/198 (12%)
Query: 5 NQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFI 64
NQP++ + +L + F + +++ ANSLRR +A+ PT+AID V N++ + DE +
Sbjct: 24 NQPNILVRNLNRDETTFHLSGVDMAYANSLRRTMMADVPTLAIDQVSFYQNTSPIPDEML 83
Query: 65 ASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQ---TRHVTTADLK 121
A R+G++PL S +V + Y+RDC C + C C V L V V+ + VT+ L+
Sbjct: 84 AHRLGMVPLISRDVGKGLRYTRDCDCDEGCYYCMVTLRLKVSAVNREYGSPMAVTSDMLE 143
Query: 122 STDARVVPVTSR-NRDADMNE----------------YGETD----DILIVKLRKGQELR 160
+ P S D+ E G+ D I + ++ +GQE+
Sbjct: 144 VIPSPNTPQQSPYGPPPDIGEEERELIAHHDPELGVPVGKGDPTASPIQLARISRGQEIE 203
Query: 161 LRAYAKKGFGKEHAKWNP 178
+ A KG K HAKW+P
Sbjct: 204 VICKAYKGIAKHHAKWSP 221
>gi|242021511|ref|XP_002431188.1| DNA-directed RNA polymerase I 40 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212516437|gb|EEB18450.1| DNA-directed RNA polymerase I 40 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 347
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 96/177 (54%), Gaps = 13/177 (7%)
Query: 14 LTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPL 73
L D ++F + +VAN+ RR+ ++E P+MAI+ V + N+T++ DE +A R+GL+PL
Sbjct: 50 LNDTEMEFDLVGINCAVANAFRRILLSEVPSMAIEKVFVSNNTTLIKDEVLAHRLGLVPL 109
Query: 74 TSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK---------STD 124
+D R+ R + + ++EF L +KC ++ H + + S
Sbjct: 110 KAD---SRLFEYRSENSNEPNEQDTLEFELKIKCSVNKEGHKNSYQIDDLYINHSVYSKH 166
Query: 125 ARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ VP+ S+ D G DIL+ KLR GQEL L+ +A KG GK+H K++P A
Sbjct: 167 LKWVPIGSQGTTYDEKNIGPVLPDILLNKLRPGQELDLKLHAVKGLGKDHTKFSPVA 223
>gi|212223251|ref|YP_002306487.1| DNA-directed RNA polymerase subunit D [Thermococcus onnurineus NA1]
gi|212008208|gb|ACJ15590.1| DNA-directed RNA polymerase, subunit D [Thermococcus onnurineus
NA1]
Length = 260
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 92/173 (53%), Gaps = 25/173 (14%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
+P I + ++++KF VE ++ AN+LRR +AE PT A+D V+ N + L DE IA
Sbjct: 2 EPKFRILEKREDSIKFIVEGIDIPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIA 61
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+ +IPLT+ V+R +S D +D ++T+ + + V + DLKS D
Sbjct: 62 HRLAMIPLTTP--VER--FSLDALELD-------DYTVTLSLEAEGPGMVYSGDLKSDDE 110
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
V P +I IVKL +GQ L L AYAK G GK+HAKW P
Sbjct: 111 GVKPANP--------------NIPIVKLAEGQNLTLNAYAKLGRGKDHAKWQP 149
>gi|389860853|ref|YP_006363093.1| DNA-directed RNA polymerase subunit D [Thermogladius cellulolyticus
1633]
gi|388525757|gb|AFK50955.1| DNA-directed RNA polymerase subunit D [Thermogladius cellulolyticus
1633]
Length = 282
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 18/166 (10%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
++ V +L V NS+RR +AE PTMA+D+V NS+V DE+IA R+GLIPLTS+
Sbjct: 13 IRLLVRGVKLHVLNSIRRAILAEVPTMAVDYVVFMENSSVFYDEYIAHRLGLIPLTSENA 72
Query: 79 VDRILYSRDCTCVD----FCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRN 134
+ + +C F +C V+ L + + + DL + D V PV +
Sbjct: 73 LGKYKPPEECREAGEKGVFSEDCFVKLELSGEGTPGGVKTLYAGDLVTGDPDVRPVYEK- 131
Query: 135 RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
I IV+L + Q ++L AYA+ G G+EH KW+P +
Sbjct: 132 -------------IPIVQLLENQRIKLEAYARLGRGREHIKWSPAS 164
>gi|281209634|gb|EFA83802.1| RNA polymerase III subunit [Polysphondylium pallidum PN500]
Length = 358
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 9/164 (5%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD 80
F++ + +AN+LRR+ I+E PTMAI+ V + N+++L DE +A R+GLIP+ VD
Sbjct: 88 FEMIGVDAPIANALRRILISEIPTMAIERVFMINNTSILQDEVLAHRLGLIPIK----VD 143
Query: 81 RILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNR----D 136
+++ ++ +E ++ FTL V+C D + S VP +N +
Sbjct: 144 PKIFNYKEPGKEYTAEDTLIFTLKVRCYKDANGETINGTVLSKHLTWVPTDDQNEMFPNE 203
Query: 137 ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
AD + DDI IVKLR GQ L ++ Y +K G+EH KW+P
Sbjct: 204 AD-HPRPAYDDIPIVKLRPGQALEVQCYCEKNIGREHIKWSPVG 246
>gi|296243119|ref|YP_003650606.1| DNA-directed RNA polymerase subunit D [Thermosphaera aggregans DSM
11486]
gi|296095703|gb|ADG91654.1| DNA-directed RNA polymerase, subunit D [Thermosphaera aggregans DSM
11486]
Length = 277
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 94/165 (56%), Gaps = 19/165 (11%)
Query: 20 KFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVV 79
+ +++ L + NS+RRV I+E PTMAID+V NS+V DE++A R+GLIPLTSD+ +
Sbjct: 14 RLRIKGISLHLLNSIRRVIISEVPTMAIDYVAFMENSSVFYDEYLAHRLGLIPLTSDQAL 73
Query: 80 DRILYSRDCTCVD----FCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNR 135
+ +C F +C V +L+ + D+ + + +L S+D V P
Sbjct: 74 WKYKSPEECREAGEKGLFSEDCFVRLSLEGEG-GDEAVTLYSDNLVSSDPDVKP------ 126
Query: 136 DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+G+ I IVKL K Q+++L AYA+ G GKEH KW+P +
Sbjct: 127 -----SFGK---IPIVKLIKPQKVKLEAYARLGRGKEHIKWSPVS 163
>gi|301092813|ref|XP_002997258.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Phytophthora infestans T30-4]
gi|262111439|gb|EEY69491.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Phytophthora infestans T30-4]
Length = 343
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 100/182 (54%), Gaps = 12/182 (6%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
Q V I LTD+ + F + + ++AN+LRR+ +AE PTMAI+ V + NS+++ DE +A
Sbjct: 35 QVKVKIQSLTDDEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLA 94
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKC------VDDQTRHVTTAD 119
R+GLIPL D D + E ++ F LDV C D T+ + ++
Sbjct: 95 HRLGLIPLNVDP--REFQAFPDNEEAEATDENTIVFKLDVTCKFDPEHPKDPTKAIHSS- 151
Query: 120 LKSTDARVVPVTSR-NRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+ S D VP ++ R + E DIL+ KLR GQ + L A+ +KG GK+HAK++P
Sbjct: 152 VYSRDLEWVPQGNQEERFGSIRPVHE--DILMAKLRPGQSIALEAHCRKGVGKDHAKFSP 209
Query: 179 TA 180
A
Sbjct: 210 VA 211
>gi|119872211|ref|YP_930218.1| RNA polymerase, insert [Pyrobaculum islandicum DSM 4184]
gi|166229321|sp|A1RSE3.1|RPOD_PYRIL RecName: Full=DNA-directed RNA polymerase subunit D
gi|119673619|gb|ABL87875.1| DNA-directed RNA polymerase, subunit D [Pyrobaculum islandicum DSM
4184]
Length = 262
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 92/173 (53%), Gaps = 19/173 (10%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
P I + T +K +E S+ NS+RRV I+E P MAID+V + +N++V+ DE +A
Sbjct: 1 MPKATIVEKTPLFLKAVIEGAYPSLVNSIRRVIISELPVMAIDYVVIVSNTSVMYDEMLA 60
Query: 66 SRIGLIPLTSDEVVDRILYSRDC-TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTD 124
R+GL+PLT+ + + DC T + SEC+V L + D+ V + DL S
Sbjct: 61 HRLGLVPLTTP--LQALPPIEDCETGLVDPSECTVRLMLQINAESDKI--VYSGDLVSER 116
Query: 125 ARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
VVPV DI IVKL KGQ + L AYAK G KEHAKW
Sbjct: 117 PDVVPVYK--------------DIPIVKLVKGQSIILEAYAKLGRAKEHAKWQ 155
>gi|159115523|ref|XP_001707984.1| DNA-directed RNA polymerase RPB3 [Giardia lamblia ATCC 50803]
gi|21842208|gb|AAM77734.1|AF510642_1 RNA polymerase II subunit Rpb3 [Giardia intestinalis]
gi|157436093|gb|EDO80310.1| DNA-directed RNA polymerase RPB3 [Giardia lamblia ATCC 50803]
Length = 326
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 95/180 (52%), Gaps = 8/180 (4%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
PS+ I TD ++ ++ ++S N LRR A+ PT+AID V+ NST L++EFIA
Sbjct: 2 NPSIKILSKTDLKLELEISGVDISYVNGLRRAIYADVPTLAIDIVKFLDNSTTLTEEFIA 61
Query: 66 SRIGLIPLTSDEVVDRILYSRDC-----TCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
R+GLIPL + + I Y C T ++ C EC+ + TL++ + R VT D+
Sbjct: 62 HRLGLIPLRTAGSLSAISYWYTCDEEHSTEIE-CRECTFKGTLNISNDSTKIRVVTDKDI 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
K D + S ++ ET I I+KL G+ + YA+K GK HAKW P A
Sbjct: 121 K-FDHGGISTLSNYLESSFGA-AETPSIPILKLAPGESINALLYARKDRGKIHAKWCPAA 178
>gi|301095581|ref|XP_002896890.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Phytophthora infestans T30-4]
gi|262108537|gb|EEY66589.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Phytophthora infestans T30-4]
Length = 339
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 100/182 (54%), Gaps = 12/182 (6%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
Q V I LTD+ + F + + ++AN+LRR+ +AE PTMAI+ V + NS+++ DE +A
Sbjct: 31 QVKVKIQSLTDDEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLA 90
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKC------VDDQTRHVTTAD 119
R+GLIPL D D + E ++ F LDV C D T+ + ++
Sbjct: 91 HRLGLIPLNVDP--REFQAFPDNEEAEATDENTIVFKLDVTCKFDPEHPKDPTKAIHSS- 147
Query: 120 LKSTDARVVPVTSR-NRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+ S D VP ++ R + E DIL+ KLR GQ + L A+ +KG GK+HAK++P
Sbjct: 148 VYSRDLEWVPQGNQEERFGSIRPVHE--DILMAKLRPGQSIALEAHCRKGVGKDHAKFSP 205
Query: 179 TA 180
A
Sbjct: 206 VA 207
>gi|147919298|ref|YP_686966.1| DNA-directed RNA polymerase subunit D [Methanocella arvoryzae
MRE50]
gi|110622362|emb|CAJ37640.1| DNA-directed RNA polymerase, subunit D [Methanocella arvoryzae
MRE50]
Length = 262
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 94/176 (53%), Gaps = 25/176 (14%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I +L D KF + D + AN LRR IA+ P MAID+V + N++VL DE +A R+
Sbjct: 3 LEIIELKDRKAKFVLTDVTPAFANGLRRAMIADVPKMAIDYVDIYDNTSVLFDEMLALRL 62
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDF-CSECSVEFTLDVK--CVDDQTRHVTTADLKSTDA 125
GLIPL ++ +D +C C CS C V ++ + CV V ++D+KS+D
Sbjct: 63 GLIPLKTN--LDMYQLQSECECKGAGCSLCQVTLSVSAEGPCV------VHSSDMKSSDP 114
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
VPV ++I I++L++GQ++ A+ GF KEHAK+ P
Sbjct: 115 ETVPV--------------DNNIPIIELKQGQKVVASGTARLGFTKEHAKYQPVCA 156
>gi|390348474|ref|XP_795508.3| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Strongylocentrotus purpuratus]
Length = 350
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 102/185 (55%), Gaps = 16/185 (8%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ + LT ++F + + +VAN+ RR+ +AE PTMAI+ V + N++++ DE +A R+
Sbjct: 48 IDVISLTHSELEFDMVGVDPAVANAFRRILLAEVPTMAIEKVSIFNNTSIIQDEILAHRL 107
Query: 69 GLIPLTSDEVVDRIL-YSRDCTCVD--FCSECSVEFTLDVKCVD--DQTRHVTTADLKST 123
GLIP+ +D RI Y + D E ++EF L VKC + ++ T D
Sbjct: 108 GLIPIKADP---RIFEYREEVNTGDETGTGEDTIEFQLKVKCTKNPNASKDATDPDELYK 164
Query: 124 DARV-------VPVTSRNRDADMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHAK 175
+A+V +P+ ++ + + DILI KLR GQE+ L+ + KG GK+HAK
Sbjct: 165 NAKVTTEHFKWIPLENQEETYGPKAFAPVNKDILIAKLRPGQEIDLKMHCVKGIGKDHAK 224
Query: 176 WNPTA 180
++P A
Sbjct: 225 FSPVA 229
>gi|171186411|ref|YP_001795330.1| RNA polymerase insert [Pyrobaculum neutrophilum V24Sta]
gi|229564213|sp|B1YC30.1|RPOD_THENV RecName: Full=DNA-directed RNA polymerase subunit D
gi|170935623|gb|ACB40884.1| RNA polymerase insert [Pyrobaculum neutrophilum V24Sta]
Length = 262
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 93/173 (53%), Gaps = 19/173 (10%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
P+V + + T +K VE S+ NSLRRV I+E P MAID V + N++V+ DE +A
Sbjct: 1 MPAVKVVERTPLFLKAVVEGAYPSLVNSLRRVIISELPVMAIDTVIVVNNTSVMYDEMLA 60
Query: 66 SRIGLIPLTSDEVVDRILYSRDC-TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTD 124
R+GLIPLT+ + + DC + + SEC+V FTL V + T V + DL S
Sbjct: 61 HRLGLIPLTTP--LQSLPPIEDCESGLADPSECTVRFTLQVNADGEVT--VYSGDLVSER 116
Query: 125 ARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
VVPV DI IVKL KGQ + L AYAK G + HAKW
Sbjct: 117 PDVVPVHK--------------DIPIVKLVKGQSIVLEAYAKLGRARGHAKWQ 155
>gi|15678067|ref|NP_275181.1| DNA-directed RNA polymerase subunit D [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3122766|sp|O26144.1|RPOD_METTH RecName: Full=DNA-directed RNA polymerase subunit D
gi|2621073|gb|AAB84545.1| DNA-dependent RNA polymerase, subunit D [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 264
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 87/172 (50%), Gaps = 19/172 (11%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ + + TD + F V + N++RR+ + E P +AI++V + N + DE +A R+
Sbjct: 3 IALKEKTDTEMVFVVSGVTVPFINAIRRICMMEVPKLAIEYVNMYRNDAKMFDEVLAHRL 62
Query: 69 GLIPLTSD-EVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
GL+PL +D E + + +C C ++CSECSV TL K V + DL S V
Sbjct: 63 GLVPLAADPEFAESLKMPEECDCEEYCSECSVSLTLRKK----GPGVVYSGDLVSETPAV 118
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
PV DI +VKL EL L A A+ G G+EHAKW PT
Sbjct: 119 KPVYP--------------DIPLVKLGDDDELELEAVAQLGVGREHAKWEPT 156
>gi|154151761|ref|YP_001405379.1| DNA-directed RNA polymerase subunit D [Methanoregula boonei 6A8]
gi|154000313|gb|ABS56736.1| DNA-directed RNA polymerase [Methanoregula boonei 6A8]
Length = 276
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 89/172 (51%), Gaps = 21/172 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ L D +F + + ANS RR I E PT+AI+ V++ N++ L DE +A R+
Sbjct: 3 IEFASLDDTVARFTLSGAQPGFANSFRRAMIGEVPTLAIEDVRIYDNTSALFDEMLAHRL 62
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDF-CSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
GLIP+ +D + DC+C C C+V +TL V + + VT++DL D +
Sbjct: 63 GLIPIRTD--LTSYSTQGDCSCGGAGCPSCTVTYTLSV----EGPKLVTSSDLIPQDPQA 116
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
PV +D+I IVKL KGQ+L + A A GK HAKW PT
Sbjct: 117 APV--------------SDNIPIVKLIKGQKLVIEARAVLNKGKVHAKWQPT 154
>gi|403361811|gb|EJY80614.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Oxytricha
trifallax]
Length = 405
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 102/198 (51%), Gaps = 20/198 (10%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ ++ I L DE + F + E +AN+LRR+ IAE PTMAI+ V + N++++ DE
Sbjct: 77 FIENSNIEILKLDDEEIIFDLIGVEPPLANALRRILIAEIPTMAIEKVNMWQNTSIIPDE 136
Query: 63 FIASRIGLIPLTSD----EVVDRILYSRDCTCVD--FCSECSVEFTLDVKCVD------- 109
+A R+GLIP+ +D E ++ D + + S+ F L V+C
Sbjct: 137 NLAHRMGLIPIKADPRQFEFHEKSTLENDQGEQQDTYTEDDSLRFKLHVRCTKKDPRAPV 196
Query: 110 ------DQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLR 162
D+ + A++ S + +PV ++ + ++ DDILI KLR GQE+ +
Sbjct: 197 IINNTVDEEKLYNNANVLSGQLKWIPVGNQAQKFGVDGIKPLFDDILIAKLRPGQEIEME 256
Query: 163 AYAKKGFGKEHAKWNPTA 180
+KG GK HAKW+P +
Sbjct: 257 LICEKGIGKTHAKWSPVS 274
>gi|145518624|ref|XP_001445184.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412628|emb|CAK77787.1| unnamed protein product [Paramecium tetraurelia]
Length = 316
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 97/180 (53%), Gaps = 13/180 (7%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
++I TDE + F++ + + +ANSLRR+ IAE PTMAI VQ+ N++V+ DE +A R+
Sbjct: 33 INILSKTDEKIVFEIINIDAPIANSLRRIMIAEIPTMAIHKVQVIQNTSVIPDEVLAHRL 92
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV--------DDQTRHVTTADL 120
GLIP+ +D + + + D ++ S++FTL KC D + T +
Sbjct: 93 GLIPIIADPL--QFIEKDDQE--EYNELNSIDFTLVAKCEKKPNSKHDDPIEQQYTNTTV 148
Query: 121 KSTDARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
S+ P + + N +I+I KLR+ QEL LR +KG GK HAKW+P
Sbjct: 149 HSSSLIWQPKGQQAKLFAANPIRPVHSNIIIAKLRENQELNLRLICEKGVGKRHAKWSPV 208
>gi|253744264|gb|EET00492.1| DNA-directed RNA polymerase RPB3 [Giardia intestinalis ATCC 50581]
Length = 326
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 93/179 (51%), Gaps = 8/179 (4%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
PS+ I TD ++ ++ ++S N LRR A+ PT+AID V+ NST L++EFIA
Sbjct: 3 PSIKILSKTDLKLELEIRGVDISYVNGLRRAIYADVPTLAIDIVKFLDNSTTLTEEFIAH 62
Query: 67 RIGLIPLTSDEVVDRILYSRDC-----TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK 121
R+GLIPL + + I Y C T ++ C EC+ + TL+V + R VT D+K
Sbjct: 63 RLGLIPLRTAGPLSAISYWYTCDEEHSTEIE-CRECTFKGTLNVSNDTTKIRVVTDKDIK 121
Query: 122 STDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ T N + E I I+KL G+ + YA+K GK HAKW P A
Sbjct: 122 FDHGGI--STLSNYMGSLLGVIEAPSIPILKLAPGESINALLYARKDRGKIHAKWCPAA 178
>gi|145517526|ref|XP_001444646.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412068|emb|CAK77249.1| unnamed protein product [Paramecium tetraurelia]
Length = 316
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 95/180 (52%), Gaps = 13/180 (7%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
++I TDE + F++ + + +ANSLRR+ IAE PTMAI VQ+ N++V+ DE +A R+
Sbjct: 33 INILSKTDEKIVFEIINIDAPIANSLRRIMIAEIPTMAIHKVQVIQNTSVIPDEVLAHRL 92
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV--------DDQTRHVTTADL 120
GLIP+ + D + + ++ S++FTL KC D + T +
Sbjct: 93 GLIPI----IADPLQFVEKDDQEEYNELNSIDFTLYAKCEKKPNSKQDDPIEQQYTNTTV 148
Query: 121 KSTDARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
S+ P + + N +I+I KLR+ QEL LR +KG GK HAKW+P
Sbjct: 149 HSSSLIWQPKGQQAKLFAANPIRPVHSNIIIAKLRENQELNLRLICEKGVGKRHAKWSPV 208
>gi|315229895|ref|YP_004070331.1| DNA-directed RNA polymerase subunit D [Thermococcus barophilus MP]
gi|315182923|gb|ADT83108.1| DNA-directed RNA polymerase subunit D [Thermococcus barophilus MP]
Length = 258
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 91/171 (53%), Gaps = 25/171 (14%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
+ + + ++ ++F +E + + AN+LRRV I E PT A+D V+ N + L DE IA R
Sbjct: 2 KIKVLEKREDAIRFILEGVDAAFANALRRVIIGEVPTFAVDEVEFYENDSALFDEIIAHR 61
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
+ +IPLT+ DR + D +D E+T+ + + V + DLKS D V
Sbjct: 62 LAMIPLTTP--YDR--FELDALELD-------EYTVTLSLEAEGPGVVYSGDLKSDDPDV 110
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
PVT +I IVKL +GQ+L L AYAK G GK+HAKW P
Sbjct: 111 KPVTP--------------NIPIVKLAEGQKLTLNAYAKLGRGKDHAKWQP 147
>gi|302845439|ref|XP_002954258.1| hypothetical protein VOLCADRAFT_64591 [Volvox carteri f.
nagariensis]
gi|300260463|gb|EFJ44682.1| hypothetical protein VOLCADRAFT_64591 [Volvox carteri f.
nagariensis]
Length = 354
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 96/188 (51%), Gaps = 29/188 (15%)
Query: 11 ITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGL 70
I L E ++F + + ++AN+LRR+ IAE PTMAI+ V + N++++ DE +A R+G+
Sbjct: 68 INKLDKEVLEFDMIGVDPAIANALRRILIAEVPTMAIEHVFMINNTSIIQDEVLAHRLGM 127
Query: 71 IPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHV--------------- 115
+PL +D + + + + ++ F LDV C + R
Sbjct: 128 VPLLADPQLFEAKVAEEAP----SEKNTLVFKLDVTCKRGENRMFSGQLEWLPGGSELPE 183
Query: 116 -TTADLKSTDARVV--PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKE 172
TT + A + P T + R DDIL+ KLR GQ ++L A+A KG GKE
Sbjct: 184 ETTCRFAAGQAHLFADPATPKPRAVH-------DDILLAKLRPGQTIQLEAHATKGRGKE 236
Query: 173 HAKWNPTA 180
HAKW+P A
Sbjct: 237 HAKWSPVA 244
>gi|288931228|ref|YP_003435288.1| RNA polymerase insert [Ferroglobus placidus DSM 10642]
gi|288893476|gb|ADC65013.1| RNA polymerase insert [Ferroglobus placidus DSM 10642]
Length = 262
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 92/174 (52%), Gaps = 21/174 (12%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
V I + +KF ++D++ AN+ RR + PT+A+D+V N+++L DE IA R
Sbjct: 2 KVEILSEEELKIKFILKDSDYVFANAWRRAMKSLVPTLAVDYVDFYLNTSLLYDEIIAHR 61
Query: 68 IGLIPLTSDEVVDRILYSRDCTC-VDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
IGLIPL +D ++R + C C + C C V L+V + + V + DL D
Sbjct: 62 IGLIPLKTD--LERYNFQDKCVCEGEGCPNCQVSLRLNV----EGPKTVYSGDLIPDDPE 115
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V PV D+I IV+L +GQ+L L A A+ G GKEHAK+ P +
Sbjct: 116 VKPV--------------YDNIPIVELYEGQQLMLEAVARLGTGKEHAKFQPVS 155
>gi|156089735|ref|XP_001612274.1| DNA-directed RNA polymerase, alpha subunit, N terminal domain
containing protein [Babesia bovis]
gi|154799528|gb|EDO08706.1| DNA-directed RNA polymerase, alpha subunit, N terminal domain
containing protein [Babesia bovis]
Length = 319
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 90/159 (56%), Gaps = 7/159 (4%)
Query: 22 QVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDR 81
++E +++AN++RR+ +AE PT+AI+ V + N+ V+ DE +A R+GL+P + D
Sbjct: 49 EIEGLNVAIANAIRRILLAEVPTLAIESVHIYQNTGVIQDEVLAHRLGLVPFDCNP--DL 106
Query: 82 ILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRD--ADM 139
I Y RD D + SV F L V+C + T + + D + VP++ + D
Sbjct: 107 IPY-RDNE--DLSDKNSVCFHLKVECKKESLAGRTNLPVYAGDMKWVPLSDEQAELFKDN 163
Query: 140 NEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
DIL+ KL GQE+ L+AY +KG GK HAKW+P
Sbjct: 164 PPKPIHKDILLTKLSPGQEIDLKAYLEKGIGKTHAKWSP 202
>gi|337283749|ref|YP_004623223.1| DNA-directed RNA polymerase subunit D [Pyrococcus yayanosii CH1]
gi|334899683|gb|AEH23951.1| DNA-directed RNA polymerase subunit D [Pyrococcus yayanosii CH1]
Length = 259
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 89/170 (52%), Gaps = 25/170 (14%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I + + +KF +E ++ AN+LRR + E PT A+D V+ N + L DE IA R+
Sbjct: 4 VEILEKRENAIKFILEGVSIAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHRL 63
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
+IPLT+ VDR ++ D +D ++T+ + + V + DLKS D V
Sbjct: 64 AMIPLTTP--VDR--FALDSLELD-------DYTVTLSLEAEGPGVVYSGDLKSDDPDVK 112
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
PVT DI IVKL +GQ L AYAK G GK+HAKW P
Sbjct: 113 PVTP--------------DIPIVKLAEGQRLVFNAYAKLGRGKDHAKWQP 148
>gi|390960760|ref|YP_006424594.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. CL1]
gi|390519068|gb|AFL94800.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. CL1]
Length = 260
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 25/173 (14%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
+P I + ++++KF VE ++ AN+LRR +AE PT A+D V+ N + L DE IA
Sbjct: 2 EPKFQILEKREDSIKFIVEGIDVPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIA 61
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+ +IPLT+ +R +S D +D ++T+ + + V + DL+S+D
Sbjct: 62 HRLAMIPLTTP--AER--FSLDALELD-------DYTVTLSLEAEGPGMVYSGDLRSSDE 110
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+ P DI IVKL +GQ L AYA+ G GK+HAKW P
Sbjct: 111 AIKPANP--------------DIPIVKLAEGQRLTFNAYARLGRGKDHAKWQP 149
>gi|367001448|ref|XP_003685459.1| hypothetical protein TPHA_0D03920 [Tetrapisispora phaffii CBS 4417]
gi|357523757|emb|CCE63025.1| hypothetical protein TPHA_0D03920 [Tetrapisispora phaffii CBS 4417]
Length = 335
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 102/193 (52%), Gaps = 32/193 (16%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+HI+ LT++ F + + S+AN+ RR+ IAE P++A ++V N++V+ DE +A RI
Sbjct: 42 IHISSLTEKEANFDLVHIDTSIANAFRRIMIAEVPSVAAEYVYFMNNTSVIQDEVLAHRI 101
Query: 69 GLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
GLIPL D D++ + D D F E ++ TLD KC TR+ A +TD
Sbjct: 102 GLIPLRVDP--DKLSWI-DSELPDEEKFTDENTIVITLDAKC----TRN-PDAPKDATDP 153
Query: 126 RVVPVTSRN-----RDADMNEYGET-------------DDILIVKLRKGQELRLRAYAKK 167
+V+ RN RD G+ DILI KLR GQE+ LRA+
Sbjct: 154 KVL---YRNAHVYARDLKFEPQGKQAELFADQPVEAIDPDILIAKLRPGQEISLRAHCIL 210
Query: 168 GFGKEHAKWNPTA 180
G G +HAK++P A
Sbjct: 211 GIGGDHAKFSPVA 223
>gi|375083505|ref|ZP_09730525.1| DNA-directed RNA polymerase subunit D [Thermococcus litoralis DSM
5473]
gi|374741832|gb|EHR78250.1| DNA-directed RNA polymerase subunit D [Thermococcus litoralis DSM
5473]
Length = 258
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 88/171 (51%), Gaps = 25/171 (14%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
+ I + D ++F +E +++ AN+LRR I E PT A+D V+ N + L DE IA R
Sbjct: 2 QIKILEKRDNAIRFILEGVDIAFANALRRTIIGEVPTFAVDEVEFYENDSALFDEIIAHR 61
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
+ LIPLT+ DR + D +D ++T+ + + + + DLKS D V
Sbjct: 62 LALIPLTTPS--DR--FELDALELD-------DYTVTLGLEAEGPAIIYSGDLKSDDPDV 110
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
PVT DI IVKL +GQ L AYAK G GK+HAKW P
Sbjct: 111 KPVTP--------------DIPIVKLAEGQRLVFNAYAKLGRGKDHAKWQP 147
>gi|409050971|gb|EKM60447.1| hypothetical protein PHACADRAFT_179740 [Phanerochaete carnosa
HHB-10118-sp]
Length = 378
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 95/178 (53%), Gaps = 9/178 (5%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + L+ +++F + + S+AN+ RR+ IAE PT+AI+ V + N++V+ DE +A RI
Sbjct: 63 VKVQRLSQRSIEFDLVGVDASIANAFRRIIIAEVPTIAIEHVYVWNNTSVIHDEVLAHRI 122
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCS--ECSVEFTLDVKC---VDDQTRHVTTADLKST 123
GL+PL++D L R T ++ F L C + ++KS
Sbjct: 123 GLVPLSADP---STLDFRTPTGFGATPNDRNTLVFRLQATCERAPKGSGKEYINDEVKSG 179
Query: 124 DARVVPVTSRNRDADMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D VP + N G T+ DI++ KLR GQE+ + +A KG GKEHAKW+P A
Sbjct: 180 DLVWVPQGEQEEVFANNPPGPTNKDIVLAKLRPGQEIDMELHAIKGVGKEHAKWSPVA 237
>gi|304314287|ref|YP_003849434.1| DNA-directed RNA polymerase, subunit D [Methanothermobacter
marburgensis str. Marburg]
gi|302587746|gb|ADL58121.1| DNA-directed RNA polymerase, subunit D [Methanothermobacter
marburgensis str. Marburg]
Length = 264
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 19/172 (11%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ + + TD + F V + N++RR+ + E P +AI++V + N + DE +A R+
Sbjct: 3 IALKEKTDTEMVFVVTGVTVPFINAIRRICMMEVPKLAIEYVNMYRNDARMFDEVLAHRL 62
Query: 69 GLIPLTSD-EVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
GL+PL +D E ++ + +C C ++CSECSV FTL K V + DL S V
Sbjct: 63 GLVPLKADPEFIEGLKMPEECDCEEYCSECSVSFTLKKK----GPGVVYSRDLLSETPAV 118
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
PV DI +VKL E+ L A A+ G G++HAKW PT
Sbjct: 119 EPVYP--------------DIPLVKLGDEDEVELEAVAQLGVGRDHAKWEPT 156
>gi|340053034|emb|CCC47320.1| putative DNA-directed RNA polymerase II subunit 3 [Trypanosoma
vivax Y486]
Length = 337
Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 89/166 (53%), Gaps = 14/166 (8%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E ++FQ+++ + S AN LRRV +AE P + + V + N++VL DE +A RIGL+PL S
Sbjct: 17 ETLEFQLDEVDNSFANGLRRVMLAEVPVLGAESVTIIKNTSVLPDEMLAHRIGLVPLYSM 76
Query: 77 EVVDRILYSRDCTC-VDFCSECSVEFTLDVKCVDDQ-TRHVTTADLKSTDARVVPVTSRN 134
+ ++ + DC C C EC V L V+C DQ + V T LK D V PV+S
Sbjct: 77 K-ARKMPFPTDCLCGGGGCVECQVTGLLTVRCPADQHSLQVFTDSLKIDDEEVYPVSSEE 135
Query: 135 RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
R + ++ L + QEL LR +K K HAK+ P +
Sbjct: 136 R-----------GLWLLTLGRSQELDLRIVIRKSIAKTHAKFMPVS 170
>gi|21592304|gb|AAM64255.1| RNA polymerase subunit [Arabidopsis thaliana]
Length = 375
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 25/193 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + LT +++F + + + AN+ RR+ IAE P+MAI+ V + N++V+ DE +A R+
Sbjct: 76 VDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVFIAYNTSVIIDEVLAHRM 135
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTR-HVTTADLK-STDAR 126
GLIP+ +D + L D + ++ F L VKC ++ R V T+DLK +
Sbjct: 136 GLIPIAADPRLFEYLSEHD----QANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGS 191
Query: 127 VVPVTSRNRDADMNEYGETD-------------------DILIVKLRKGQELRLRAYAKK 167
+ S N+ + + Y DILI KL GQE+ L A+A K
Sbjct: 192 ELLRESENKTSKLKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVK 251
Query: 168 GFGKEHAKWNPTA 180
G GK HAKW+P
Sbjct: 252 GIGKTHAKWSPVG 264
>gi|71031382|ref|XP_765333.1| DNA-directed RNA polymerase I [Theileria parva strain Muguga]
gi|68352289|gb|EAN33050.1| DNA-directed RNA polymerase I, putative [Theileria parva]
Length = 303
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 87/160 (54%), Gaps = 15/160 (9%)
Query: 22 QVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDR 81
++ ++S+AN+LRR+ I+E PT+A++ VQ+ N+ V+ DE +A R+GLIP D +
Sbjct: 48 EIVGLDVSLANALRRILISEVPTLAVETVQIYQNTGVIQDELLAHRLGLIPFAIDPDLFN 107
Query: 82 ILYSRDCTCVDFCSECSVEFTLDVKCVD-DQTRHVTTADLKSTDARVVPVTSRNRDADMN 140
+ C + + SV F L VK DQ+ ++++ L D PV
Sbjct: 108 FKSNFKTNCEEINDKNSVCFKLKVKYNKFDQSDYLSSNSLMFKDNPPKPV---------- 157
Query: 141 EYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
DDILI KL GQE+ L Y +KG GK H+KW+P +
Sbjct: 158 ----YDDILITKLAPGQEIDLNMYLEKGIGKVHSKWSPVS 193
>gi|170291194|ref|YP_001738010.1| DNA-directed RNA polymerase subunit D [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175274|gb|ACB08327.1| DNA-directed RNA polymerase subunit D [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 251
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 87/173 (50%), Gaps = 26/173 (15%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + +L+D+ +E S ANS+RR IAE PT AID V N+T DE+IA R+
Sbjct: 3 VRVIELSDQRTLLVLEGVSPSFANSIRRAIIAEVPTFAIDEVIFFENTTPFFDEYIAHRL 62
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
+IPL + S D VD +E + K D V + +LKS+D +
Sbjct: 63 AMIPLRT---------SLDVLRVDPNRTVVLELSKKAK---DPIEVVYSGELKSSDPLIY 110
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
P D I I+K+RKGQ+LR +A A+ G GK+H+KW+P A
Sbjct: 111 PA--------------NDKIPIIKMRKGQKLRFQAIARIGRGKDHSKWSPAAA 149
>gi|429328059|gb|AFZ79819.1| DNA-directed RNA polymerase I, putative [Babesia equi]
Length = 315
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 90/173 (52%), Gaps = 17/173 (9%)
Query: 17 ENVKF----QVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIP 72
+N KF + E +S+AN+LRR+ IAE PT+AI+ V++ N+ V+ DE +A R+GL+P
Sbjct: 40 KNTKFHSVVEFEGLNVSIANALRRILIAEIPTLAIETVEIRQNTGVVQDELLAHRLGLVP 99
Query: 73 LTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTS 132
D + Y + D S C F L KC+ ++ T L + D P
Sbjct: 100 FNVDP--EDFSYKNHESLGDKNSLC---FKLSAKCLRSDSQGRNTLSLYAKDLVWHPFNE 154
Query: 133 RNR-----DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ D +G DIL+ KL GQEL L AY +KG GK H+KW+P +
Sbjct: 155 AQKLKFQDDPPRPIHG---DILLTKLAGGQELDLTAYLEKGIGKTHSKWSPVS 204
>gi|84994468|ref|XP_951956.1| DNA-directed RNA polymerases I and III, 40 kDa polypeptide
[Theileria annulata strain Ankara]
gi|65302117|emb|CAI74224.1| DNA-directed RNA polymerases I and III, 40 kDa polypeptide,
putative [Theileria annulata]
Length = 329
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 99/171 (57%), Gaps = 19/171 (11%)
Query: 22 QVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVD 80
++ ++S AN+LRR+ I+E PT+A++ VQ+ N+ V+ DE +A R+GLIP + D ++ +
Sbjct: 48 EIAGLDVSFANALRRILISEVPTLAVETVQIYQNTGVVQDELLAHRLGLIPFSIDPDLFN 107
Query: 81 RILYSRDCTCVDFCSEC----SVEFTLDVKCVD-DQTRHVTTADLKSTDARVVPVTSRNR 135
S++ C C E SV F L VK DQ+ +++ + S D + VP+ S N+
Sbjct: 108 FKSSSKNNHCFADCEEINDKNSVCFKLKVKYNKFDQSEYLS---IYSNDLKWVPL-SNNQ 163
Query: 136 DADMNE------YGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ + YG DILI KL GQE+ L Y +KG GK H+KW+P +
Sbjct: 164 EIMFKDNPPKPVYG---DILITKLGPGQEIDLNMYLEKGIGKVHSKWSPVS 211
>gi|340501661|gb|EGR28416.1| polymerase i polypeptide 30kda, putative [Ichthyophthirius
multifiliis]
Length = 330
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 97/188 (51%), Gaps = 20/188 (10%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
+ I + E ++FQ++ + +AN+LRR+ IAE PTMAI V + N++++ DE +A R
Sbjct: 35 KIEILNSKPEQIEFQLQGVDAPIANALRRIMIAEVPTMAIHKVYIYQNTSIIPDEVLAHR 94
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQT--------------- 112
+GL+P+ +D L+ ++ S++F++ VKC QT
Sbjct: 95 LGLLPIQADPR----LFEEKEDDAEYNENNSIKFSIKVKCQKKQTYNNHSQKDLENLDPE 150
Query: 113 RHVTTADLKSTDARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRAYAKKGFGK 171
+++ A + S + P+ ++ N D+I++ KLR+ QE+ +KG GK
Sbjct: 151 KYLENAIVYSGQFKWEPIGNQKERFKENIIKIVHDNIIVAKLRENQEIIAEVICQKGMGK 210
Query: 172 EHAKWNPT 179
HAKW+P
Sbjct: 211 NHAKWSPV 218
>gi|42571933|ref|NP_974057.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|332195617|gb|AEE33738.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 302
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 101/194 (52%), Gaps = 27/194 (13%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + LT +++F + + + AN+ RR+ IAE P+MAI+ V + N++V+ DE +A R+
Sbjct: 76 VDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHRM 135
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTR-HVTTADLK------ 121
GLIP+ +D + L D + ++ F L VKC ++ R V T+DLK
Sbjct: 136 GLIPIAADPRLFEYLSEHDQAN----EKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGS 191
Query: 122 ---------STDARVVPVTSRNRDADMNEYGETD------DILIVKLRKGQELRLRAYAK 166
++ + S ++D+ + E+ DILI KL GQE+ L A+A
Sbjct: 192 ELLRESENKTSKPKTYTSFSCSQDS-LPEFANNPITPCDLDILIAKLAPGQEIELEAHAV 250
Query: 167 KGFGKEHAKWNPTA 180
KG GK HAKW+P
Sbjct: 251 KGIGKTHAKWSPVG 264
>gi|15219820|ref|NP_176282.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|30696474|ref|NP_849833.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|12323800|gb|AAG51868.1|AC079675_3 RNA polymerase subunit; 10595-12672 [Arabidopsis thaliana]
gi|110741863|dbj|BAE98873.1| RNA polymerase subunit [Arabidopsis thaliana]
gi|332195618|gb|AEE33739.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|332195619|gb|AEE33740.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 375
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 102/194 (52%), Gaps = 27/194 (13%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + LT +++F + + + AN+ RR+ IAE P+MAI+ V + N++V+ DE +A R+
Sbjct: 76 VDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHRM 135
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTR-HVTTADLK------ 121
GLIP+ +D + L D + ++ F L VKC ++ R V T+DLK
Sbjct: 136 GLIPIAADPRLFEYLSEHD----QANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGS 191
Query: 122 -----STDARVVPVT----SRNRDADMNEYGETD------DILIVKLRKGQELRLRAYAK 166
S + P T S ++D+ + E+ DILI KL GQE+ L A+A
Sbjct: 192 ELLRESENKTSKPKTYTSFSCSQDS-LPEFANNPITPCDLDILIAKLAPGQEIELEAHAV 250
Query: 167 KGFGKEHAKWNPTA 180
KG GK HAKW+P
Sbjct: 251 KGIGKTHAKWSPVG 264
>gi|514322|gb|AAB00528.1| RNA polymerase subunit [Arabidopsis thaliana]
gi|1586549|prf||2204246A RNA polymerase
Length = 375
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 102/194 (52%), Gaps = 27/194 (13%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + LT +++F + + + AN+ RR+ IAE P+MAI+ V + N++V+ DE +A R+
Sbjct: 76 VDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHRM 135
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTR-HVTTADLK------ 121
GLIP+ +D + L D + ++ F L VKC ++ R V T+DLK
Sbjct: 136 GLIPIAADPRLFEYLSEHD----QANEKNNIVFKLHVKCPKNRPRLKVLTSDLKWLPNGS 191
Query: 122 -----STDARVVPVT----SRNRDADMNEYGETD------DILIVKLRKGQELRLRAYAK 166
S + P T S ++D+ + E+ DILI KL GQE+ L A+A
Sbjct: 192 ELLRESENKTSKPKTYTSFSCSQDS-LPEFANNPITPCDLDILIAKLAPGQEIELEAHAV 250
Query: 167 KGFGKEHAKWNPTA 180
KG GK HAKW+P
Sbjct: 251 KGIGKTHAKWSPVG 264
>gi|403222412|dbj|BAM40544.1| DNA-directed RNA polymerases I and III subunit [Theileria
orientalis strain Shintoku]
Length = 305
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 96/174 (55%), Gaps = 7/174 (4%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V+ T+ + ++E ++S AN+LRR+ ++E PT+A++ VQ+ N+ V+ DE +A R+
Sbjct: 37 VNFLKKTESHSIVEIEGLDVSFANALRRILLSEVPTLAVETVQIYQNTGVIQDELLAHRL 96
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP V+ L++ C + + SV F L VK ++ + S+ + V
Sbjct: 97 GLIPFN----VNPDLFTFK-NCEEINDKNSVCFKLKVKYDRNEPNSGNYLPVYSSFLKWV 151
Query: 129 PVTSRNRDADMNEYGET--DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
P++S N + D+ILI KL GQE+ L Y +KG GK HAKW+P +
Sbjct: 152 PLSSNQEATFKNNPPKPVHDNILITKLAPGQEIDLNVYLEKGTGKVHAKWSPVS 205
>gi|303277947|ref|XP_003058267.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460924|gb|EEH58218.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 410
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 105/215 (48%), Gaps = 47/215 (21%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ +T L DE V+F+++ ++AN+ RR+ IAE PTMAI+ V + N++V+ DE A R+
Sbjct: 81 LEVTHLDDEKVEFEMQGLSPAIANAFRRILIAEVPTMAIEKVFMVNNTSVIQDEVFAHRL 140
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS----TD 124
GLIP+ +D + + D + ++ F + VKC ++T T L + TD
Sbjct: 141 GLIPIRADPRLFDLRGEGDTP----TEKNTIVFKMCVKCTREKTTDGTKGALINDKVYTD 196
Query: 125 ARV-VPVTS---------------------RNRDADMNEYGET----------------- 145
+ V +P S + R+ + E GE
Sbjct: 197 SLVWLPNGSELPPDEETKFTQFSCDQGEYLKKRNKESKELGEKEYFNRNGKDPNVISTVH 256
Query: 146 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
DDIL+VK+ GQE+ L A+ KG GKEHAKW+P
Sbjct: 257 DDILLVKMVAGQEIELEAHCTKGDGKEHAKWSPVG 291
>gi|11499863|ref|NP_071107.1| DNA-directed RNA polymerase subunit D [Archaeoglobus fulgidus DSM
4304]
gi|3122769|sp|O28002.1|RPOD_ARCFU RecName: Full=DNA-directed RNA polymerase subunit D
gi|2648239|gb|AAB88973.1| DNA-directed RNA polymerase, subunit D (rpoD) [Archaeoglobus
fulgidus DSM 4304]
Length = 264
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 21/175 (12%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P + I + D +KF +++ ++ANS RR AE P MA+D+V + NS+ DE IA
Sbjct: 3 PEIEILEEKDFKIKFILKNASPALANSFRRAMKAEVPAMAVDYVDIYLNSSYFYDEVIAH 62
Query: 67 RIGLIPLTSDEVVDRILYSRDCTC-VDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+ ++P+ + +DR +C+C + C C + F L+V + + V + D S D
Sbjct: 63 RLAMLPIKT--YLDRFNMQSECSCGGEGCPNCQISFRLNV----EGPKVVYSGDFISDDP 116
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
VV D+I +++L +GQ+L L A A+ G G+EHAK+ P +
Sbjct: 117 DVV--------------FAIDNIPVLELFEGQQLMLEAVARLGTGREHAKFQPVS 157
>gi|18978019|ref|NP_579376.1| DNA-directed RNA polymerase subunit D [Pyrococcus furiosus DSM
3638]
gi|397652704|ref|YP_006493285.1| DNA-directed RNA polymerase subunit D [Pyrococcus furiosus COM1]
gi|23822102|sp|Q8U0E4.1|RPOD_PYRFU RecName: Full=DNA-directed RNA polymerase subunit D
gi|18893802|gb|AAL81771.1| DNA-directed RNA polymerase subunit d [Pyrococcus furiosus DSM
3638]
gi|393190295|gb|AFN04993.1| DNA-directed RNA polymerase subunit D [Pyrococcus furiosus COM1]
Length = 261
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 25/170 (14%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I + ++++KF ++ +S AN+LRR + E PT A+D V+ N + L DE IA R+
Sbjct: 6 VQILEKKEDSIKFVLKGVHVSFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHRL 65
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
+IPLT+ VDR + D +D ++T+ + + V + DLKS D V
Sbjct: 66 AMIPLTTP--VDR--FELDALELD-------DYTVTLSLEAEGPGIVYSGDLKSDDPDVK 114
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
PV +I IVKL +GQ L AYAK G GK+HAKW P
Sbjct: 115 PVNP--------------NIPIVKLAEGQRLVFNAYAKLGRGKDHAKWQP 150
>gi|327400272|ref|YP_004341111.1| DNA-directed RNA polymerase subunit D [Archaeoglobus veneficus
SNP6]
gi|327315780|gb|AEA46396.1| DNA-directed RNA polymerase subunit D [Archaeoglobus veneficus
SNP6]
Length = 261
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 87/161 (54%), Gaps = 21/161 (13%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD 80
F + D ++ ANS RR + PTMA+D+V + N++ L DE +A RIGLIPL ++ ++
Sbjct: 15 FILRDAPIAFANSFRRAMKSLVPTMAVDYVDVYLNTSYLYDEILAHRIGLIPLKTN--LE 72
Query: 81 RILYSRDCTC-VDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADM 139
+ +C+C + C C V L+V + + V + D S D VPV
Sbjct: 73 KFNMPDECSCGGEGCPNCQVSLRLNV----EGPKLVYSGDFVSDDPETVPV--------- 119
Query: 140 NEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D+I +V+L KGQ+L + A A+ G GKEH+K+ P +
Sbjct: 120 -----YDNIPVVELYKGQQLMIEAVARLGTGKEHSKYQPVS 155
>gi|340375977|ref|XP_003386510.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Amphimedon queenslandica]
Length = 346
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 99/185 (53%), Gaps = 13/185 (7%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I L+ +V+F + + +AN++RR+ + E PTMAI+ V + N++V+ D +A R+
Sbjct: 46 VDIVSLSYSSVEFDMIGLDPPIANAIRRILLVEVPTMAIEKVHVINNTSVIQDGVLAHRM 105
Query: 69 GLIPLTSDEVVDRILYSR--DCTCVD-FCSECSVEFTLDVKC---------VDDQTRHVT 116
GLIPL +D L R D + + +EF L VKC +D
Sbjct: 106 GLIPLFADPRKFSFLPPRTEDAPFPEQLTPQHMLEFKLKVKCSRNVNAPSDSEDPNELYI 165
Query: 117 TADLKSTDARVVPVTSRNRDADMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHAK 175
+ + S D + VP+ +++ +++ D DILI KLR GQE+ LR KG GK+HAK
Sbjct: 166 SHKVTSGDMKWVPIEDQSQLFSVHDIRPVDKDILIAKLRPGQEIDLRLICVKGIGKDHAK 225
Query: 176 WNPTA 180
++P A
Sbjct: 226 FSPVA 230
>gi|342180433|emb|CCC89910.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 392
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 14/166 (8%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E + FQ+++ + S AN LRRV +AE P +A+ V + N++VL DE IA RIGL+PL S
Sbjct: 77 ETLVFQLDEVDNSFANGLRRVLLAEVPVLAVVSVTIVQNTSVLPDEMIAHRIGLVPLYSM 136
Query: 77 EVVDRILYSRDCTCVDF-CSECSVEFTLDVKCVDDQ-TRHVTTADLKSTDARVVPVTSRN 134
+ + L + DC C C +C + + V+C D+ + V T LK D +V PV+S
Sbjct: 137 KAREMQL-AGDCLCGGLGCIKCQITGEMKVRCPSDRHSLQVFTDSLKIDDEQVYPVSSEE 195
Query: 135 RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
R + ++ L + QEL LR +K K HAK+ P +
Sbjct: 196 R-----------GVWLLTLGRSQELDLRILIRKSIAKAHAKFMPVS 230
>gi|325187132|emb|CCA21673.1| DNAdirected RNA polymerase I and III subunit RPAC1 p [Albugo
laibachii Nc14]
Length = 343
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 99/182 (54%), Gaps = 10/182 (5%)
Query: 5 NQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFI 64
Q + I L D+ ++F + + S+AN+LRR+ ++E PTMAI+ V + NS+++ DE +
Sbjct: 39 QQIQIQIKHLDDQEMEFDLIGVDPSIANALRRILLSEVPTMAIEHVYIWNNSSIIQDEVL 98
Query: 65 ASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDD-----QTRHVTTAD 119
A R+GLIPL D + + + E ++ F LDV C D + + +
Sbjct: 99 AHRLGLIPLLVDP--REFQHFPEDEEAEATDENTIVFKLDVTCRSDPNEPENSSKASHSS 156
Query: 120 LKSTDARVVPVTSR-NRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+ S D VP ++ R + E DILI KLR GQ + L A+ +KG G++HAK++P
Sbjct: 157 VYSRDLEWVPQGNQEERFTSIRPVSE--DILIAKLRPGQSIALEAHCRKGIGRDHAKFSP 214
Query: 179 TA 180
+
Sbjct: 215 VS 216
>gi|388522223|gb|AFK49173.1| unknown [Lotus japonicus]
Length = 237
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 68/103 (66%), Gaps = 11/103 (10%)
Query: 84 YSRDCTCVDF---CSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPV---TSRNRDA 137
+SRDC D C CSVEF L VKC+ D+T VT+ DL S+D VVPV + D+
Sbjct: 5 FSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDS 64
Query: 138 DMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+N+ I+IVKLR+GQELRLRA A+KG GK+HAKW+P A
Sbjct: 65 AVNK-----GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 102
>gi|300120859|emb|CBK21101.2| unnamed protein product [Blastocystis hominis]
Length = 366
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 100/185 (54%), Gaps = 20/185 (10%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
++I +DE V F++ + S+AN+LRRV IAE PTMAI V + N++V+ DE + R+
Sbjct: 38 INILSQSDEQVVFELVGVDASIANALRRVLIAEVPTMAISTVFMNNNTSVMQDEVLCHRL 97
Query: 69 GLIPLTSDEV-VDRIL------YSRDCTCVDFCSECSVEFTLDVKCVD----DQTRHVTT 117
GLIP+ +D D I ++R DF + S++F L V C + +
Sbjct: 98 GLIPIKADANDFDYICPPGENGHNRS----DFTDKNSLKFNLRVTCPSLSELQKAANNRN 153
Query: 118 ADLKSTDARVVPVTSRNRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
+ + ++ + + R D+ E G+ DDI++ KL GQ + L YA KG G++H
Sbjct: 154 VEYLTVYSQSLELEKLGRQLDLPE-GQIGLVHDDIILTKLAPGQAIDLECYATKGVGEDH 212
Query: 174 AKWNP 178
AKW+P
Sbjct: 213 AKWSP 217
>gi|300175011|emb|CBK20322.2| unnamed protein product [Blastocystis hominis]
Length = 366
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 100/186 (53%), Gaps = 20/186 (10%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
++I +DE V F++ + S+AN+LRRV IAE PTMAI V + N++V+ DE + R+
Sbjct: 38 INILSQSDEQVVFELVGVDASIANALRRVLIAEVPTMAISTVFMNNNTSVMQDEVLCHRL 97
Query: 69 GLIPLTSDEV-VDRIL------YSRDCTCVDFCSECSVEFTLDVKCVD----DQTRHVTT 117
GLIP+ +D D I ++R DF + S++F L V C + +
Sbjct: 98 GLIPIKADANDFDYICPPGENGHNRS----DFTDKNSLKFNLRVTCPSLSELQKAANNRN 153
Query: 118 ADLKSTDARVVPVTSRNRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
+ + ++ + + R D+ E G+ DDI++ KL GQ + L YA KG G++H
Sbjct: 154 VEYLTVYSQSLELEKLGRQLDLPE-GQIGLVHDDIILTKLAPGQAIDLECYATKGVGEDH 212
Query: 174 AKWNPT 179
AKW+P
Sbjct: 213 AKWSPV 218
>gi|240104023|ref|YP_002960332.1| DNA-directed RNA polymerase subunit D [Thermococcus gammatolerans
EJ3]
gi|239911577|gb|ACS34468.1| DNA-directed RNA polymerase subunit D (rpoD) [Thermococcus
gammatolerans EJ3]
Length = 260
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 90/173 (52%), Gaps = 25/173 (14%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
+P I + ++ +KF + ++ AN+LRR +AE PT A+D V+ N + L DE IA
Sbjct: 2 EPKFEIFERREDAIKFILRGVDVPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIA 61
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+ +IPLT+ V+R +S D +D ++T+ + + V + DLKS D
Sbjct: 62 HRLAMIPLTTP--VER--FSLDALELD-------DYTVTLSLQAEGPGMVYSGDLKSDDE 110
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
V P +I IVKL +GQ+L AYAK G GK+HAKW P
Sbjct: 111 GVKPANP--------------NIPIVKLAEGQKLTFNAYAKLGRGKDHAKWQP 149
>gi|328866801|gb|EGG15184.1| RNA polymerase III subunit [Dictyostelium fasciculatum]
Length = 355
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 92/166 (55%), Gaps = 12/166 (7%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD 80
F++ + +AN+LRR+ IAE PTMAI+ V + N+++L DE +A R+GLIP+ VD
Sbjct: 83 FEMIGVDAPIANALRRILIAEIPTMAIEKVFIINNTSILQDEVLAHRLGLIPIK----VD 138
Query: 81 RILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMN 140
++ ++ +E ++ F L+V+C D+ + S + P + ++++
Sbjct: 139 PRKFNFKQASKEYTAEDTLIFKLNVRCYKDENGETVNGTVTSGQLKWEP--TEDQESMFG 196
Query: 141 EYGE------TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
E E DDI IVKLR GQ + ++ Y +K G+EH KW+P
Sbjct: 197 ENPEDFPRPVHDDIPIVKLRPGQTVDIQLYCEKNIGREHIKWSPVG 242
>gi|386876610|ref|ZP_10118709.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein [Candidatus
Nitrosopumilus salaria BD31]
gi|386805572|gb|EIJ65092.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein [Candidatus
Nitrosopumilus salaria BD31]
Length = 221
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 87/174 (50%), Gaps = 19/174 (10%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
S+ + + + +++ L AN+LRRV + P AID V + NS+VL DE +A R
Sbjct: 12 SLEVISKDNHKISIKLKGVPLQYANALRRVCLNGVPVFAIDTVDIVENSSVLPDEGLAHR 71
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
+GLIPL +D + R C C CS C V LD D TR + + +L S D
Sbjct: 72 LGLIPLKTD--LARFNEPSKCECQSETGCSNCKVMLVLD-SGDSDVTRTILSNELSSEDD 128
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
V PV +D I IV+L GQ +++ YA+ G G EHAKWN T
Sbjct: 129 TVKPV--------------SDKIPIVQLAPGQRIKVECYARLGRGTEHAKWNAT 168
>gi|297837401|ref|XP_002886582.1| ATRPAC42 [Arabidopsis lyrata subsp. lyrata]
gi|297332423|gb|EFH62841.1| ATRPAC42 [Arabidopsis lyrata subsp. lyrata]
Length = 376
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 100/193 (51%), Gaps = 25/193 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + LT +++F + + + AN+ RR+ IAE P+MAI+ V + N++V+ DE +A R+
Sbjct: 76 VDVISLTKTDMEFDMIGIDAAFANAFRRILIAELPSMAIEKVLIAYNTSVIIDEVLAHRM 135
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTR-HVTTADLK------ 121
GLIP+ +D + L D + ++ F L VKC ++ R V T+DLK
Sbjct: 136 GLIPIAADPRLFEYLSEND----QANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGS 191
Query: 122 -------STDARVVPVTSRNRDAD-MNEYGETD------DILIVKLRKGQELRLRAYAKK 167
+ ++ TS + D + E+ DILI KL GQE+ L A+A K
Sbjct: 192 EFLRESGGSTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVK 251
Query: 168 GFGKEHAKWNPTA 180
G GK HAKW+P
Sbjct: 252 GIGKTHAKWSPVG 264
>gi|308806201|ref|XP_003080412.1| RNA polymerase subunit (ISS) [Ostreococcus tauri]
gi|116058872|emb|CAL54579.1| RNA polymerase subunit (ISS) [Ostreococcus tauri]
Length = 382
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 103/196 (52%), Gaps = 28/196 (14%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
++ ITD ++E V F++E + AN+ RR+ I+E PTMAI+ V + N++V+ DE A R
Sbjct: 72 ALTITDASEERVVFEMEGCSAAFANAFRRIIISEVPTMAIEKVYMINNTSVVPDEVFAHR 131
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVDFCSEC-SVEFTLDVKC----VDDQT------RHVT 116
+GL+P+ +D R Y D +E ++ +L +C +DD + R V
Sbjct: 132 LGLVPIKADPA--RFEYRGP---NDLANETNTIVLSLHARCHRERLDDGSLGEVVNRSVY 186
Query: 117 TADLK-STDARVVPVTSRNRDADMNE-----YGET------DDILIVKLRKGQELRLRAY 164
+ L+ D +P R + +D +GE DDIL+VKL GQE+ L +
Sbjct: 187 SNALQWCPDGSQLPEEERAKYSDFKRSQRESFGEEELGCVHDDILLVKLAPGQEIELECH 246
Query: 165 AKKGFGKEHAKWNPTA 180
KG G+EH+KW+P
Sbjct: 247 CVKGIGQEHSKWSPVG 262
>gi|407464315|ref|YP_006775197.1| RNA polymerase insert [Candidatus Nitrosopumilus sp. AR2]
gi|407047503|gb|AFS82255.1| RNA polymerase insert [Candidatus Nitrosopumilus sp. AR2]
Length = 212
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 86/172 (50%), Gaps = 19/172 (11%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
S+ + ++ + ++ L AN+LRRV + P AID V + NS+VL DE +A R
Sbjct: 3 SLEVISKDNQKIAVKLSGIPLQYANALRRVCLNGVPVFAIDTVDIIENSSVLPDEGLAHR 62
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
+GLIPLT+D + R C C CS C V LD D TR V + +L S D
Sbjct: 63 LGLIPLTTD--LSRFNEPSKCECQSETGCSNCRVMLVLD-SGDSDVTRTVLSNELSSEDD 119
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
+ P +D I IV+L GQ +++ YA+ G G EHAKWN
Sbjct: 120 SIKPT--------------SDKIPIVQLAPGQRIKIECYARLGRGTEHAKWN 157
>gi|429216770|ref|YP_007174760.1| DNA-directed RNA polymerase subunit alpha [Caldisphaera lagunensis
DSM 15908]
gi|429133299|gb|AFZ70311.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Caldisphaera lagunensis DSM 15908]
Length = 280
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 17/179 (9%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
+ SV I D + + +E ++ N+LRR+ +++ PTMA+D+V N T + DE IA
Sbjct: 2 EKSVDILDFNNNRITVYLEGFPIAFGNALRRLVLSDVPTMAVDYVYFYDNDTSVYDEIIA 61
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTC-VDFCSECSVEFTLDVKCVDDQTR--HVTTADLKS 122
R+GL+ L SD+ + + +C + + C + L+ + +D +V +DLK
Sbjct: 62 HRLGLLVLKSDDAIHKYGLPENCAGKSETDTNCYTQIVLEKELSNDSGSGIYVKASDLKF 121
Query: 123 TDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
+DA + P D IV L GQ + L AYA+ G GKEH KW+P +
Sbjct: 122 SDASIKPAYP--------------DTPIVYLAPGQRIHLVAYARLGRGKEHGKWSPASA 166
>gi|13124813|sp|O59303.2|RPOD_PYRHO RecName: Full=DNA-directed RNA polymerase subunit D
Length = 259
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 87/171 (50%), Gaps = 25/171 (14%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
+ I T++++ F +E ++ AN+LRR + E PT A+D V+ N + L DE IA R
Sbjct: 3 KIKILKKTEDSITFILEGVSVAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHR 62
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
+ +IPL + DR + D +D ++T+ + + V + DLKS D V
Sbjct: 63 LAMIPLKTP--TDR--FELDALELD-------DYTVTLSLEAEGPGIVYSGDLKSDDPDV 111
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
PVT DI IVKL KGQ L AYAK G GK+HAKW P
Sbjct: 112 KPVTP--------------DIPIVKLAKGQRLVFNAYAKLGRGKDHAKWQP 148
>gi|14591408|ref|NP_143488.1| DNA-directed RNA polymerase subunit D [Pyrococcus horikoshii OT3]
gi|3258066|dbj|BAA30749.1| 261aa long hypothetical DNA-directed RNA polymerase subunit D
[Pyrococcus horikoshii OT3]
Length = 261
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 87/171 (50%), Gaps = 25/171 (14%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
+ I T++++ F +E ++ AN+LRR + E PT A+D V+ N + L DE IA R
Sbjct: 5 KIKILKKTEDSITFILEGVSVAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHR 64
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
+ +IPL + DR + D +D ++T+ + + V + DLKS D V
Sbjct: 65 LAMIPLKTP--TDR--FELDALELD-------DYTVTLSLEAEGPGIVYSGDLKSDDPDV 113
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
PVT DI IVKL KGQ L AYAK G GK+HAKW P
Sbjct: 114 KPVTP--------------DIPIVKLAKGQRLVFNAYAKLGRGKDHAKWQP 150
>gi|332796346|ref|YP_004457846.1| RNA polymerase D subunit [Acidianus hospitalis W1]
gi|332694081|gb|AEE93548.1| Archaeal RNA polymerase D subunit [Acidianus hospitalis W1]
Length = 260
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 85/162 (52%), Gaps = 16/162 (9%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
+ ++ L N++RR + P MA+D V + N++ L DE +A R+GLIP +SDE
Sbjct: 12 ISLSLDGYPLEFVNAIRRACMLYVPVMAVDDVYIIENNSPLYDEILAHRLGLIPFSSDEA 71
Query: 79 VDRILYSRDCT-CVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDA 137
+D S +C C + C C + LDV+ D + V + D+KS D VVP++
Sbjct: 72 IDHYRPSEECANCQENCDGCFSKIYLDVEAKDSEVM-VYSKDIKSDDPAVVPISK----- 125
Query: 138 DMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
DI IV L K Q++ L A + G+G EHAK+NP
Sbjct: 126 ---------DIPIVLLGKNQKVSLEARLRLGYGIEHAKFNPV 158
>gi|161527936|ref|YP_001581762.1| RNA polymerase insert [Nitrosopumilus maritimus SCM1]
gi|160339237|gb|ABX12324.1| RNA polymerase insert [Nitrosopumilus maritimus SCM1]
Length = 221
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 87/172 (50%), Gaps = 19/172 (11%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
S+ + ++ + +++ L AN+LRRV + P A+D V + NS+VL DE +A R
Sbjct: 12 SLEVISKDNQKIALKLKGVPLQYANALRRVCLNGVPVFAVDTVDIIENSSVLPDEGLAHR 71
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
+GLIPL +D + R C C CS C V LD D TR V + +L S D
Sbjct: 72 LGLIPLKTD--LSRFNEPSKCECQSETGCSNCKVMLVLD-SGDSDVTRTVLSNELSSEDD 128
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
+ P+ +D I IV+L GQ +++ YA+ G G EHAKWN
Sbjct: 129 SITPI--------------SDKIPIVELAPGQRIKVECYARLGRGTEHAKWN 166
>gi|72387431|ref|XP_844140.1| DNA-directed RNA polymerase II subunit 3 [Trypanosoma brucei
TREU927]
gi|62360648|gb|AAX81059.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
brucei]
gi|70800672|gb|AAZ10581.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|261327301|emb|CBH10277.1| DNA-directed RNA polymerase II subunit 3,putative [Trypanosoma
brucei gambiense DAL972]
Length = 337
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 86/166 (51%), Gaps = 14/166 (8%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E + F++ + + S AN LRRV +AE P + ++ V + N++VL DE IA RIGL+PL S
Sbjct: 17 ETLVFKLNEVDNSFANGLRRVLLAEVPVLGVESVTIIQNTSVLPDEMIAHRIGLVPLYSK 76
Query: 77 EVVDRILYSRDCTCVD-FCSECSVEFTLDVKCVDDQTRHVTTAD-LKSTDARVVPVTSRN 134
++ + DC C C EC + L V+C +Q AD LK D V PV+S
Sbjct: 77 R-AKQMQFFHDCLCGGTGCIECQITGELKVRCPSNQHSLQVFADSLKIDDEGVYPVSSEE 135
Query: 135 RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
R + ++ L + QE+ LR +K K HAK+ P +
Sbjct: 136 R-----------GVWLLTLGRSQEINLRVLIRKSIAKTHAKFMPVS 170
>gi|427798089|gb|JAA64496.1| Putative rna polymerase i and iii subunit, partial [Rhipicephalus
pulchellus]
Length = 445
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 95/182 (52%), Gaps = 14/182 (7%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I + D ++F + + S+AN++RR+ +AE PTMA D V L N+ ++ DE +A RI
Sbjct: 48 VGIISMDDTTIEFDLVGLDPSIANAIRRILLAEVPTMAPDKVYLYNNTGIIQDEVLAHRI 107
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQ--TRHVTTADLKSTDAR 126
GL+P D R+ R+ D E +VEF L VKC + + TT D D
Sbjct: 108 GLVPFNIDP---RMFEYRESES-DGSPEDTVEFELKVKCTKNPQAPKDATTPDELYKDHM 163
Query: 127 VVP--VTSRNRDADMNEYGET------DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
V +T + +G DDI++ KLR GQE+ L+ + KG G+ HAK++P
Sbjct: 164 VYTKHLTWNPLGSQAEIFGNKPPRPVHDDIILAKLRPGQEIDLKLHCVKGTGQVHAKFSP 223
Query: 179 TA 180
A
Sbjct: 224 VA 225
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 96 ECSVEFTLDVKCVDDQ--TRHVTTADLKSTDARVVP--VTSRNRDADMNEYGET------ 145
E +VEF L VKC + + TT D D V +T + +G
Sbjct: 253 EDTVEFELKVKCTKNPQAPKDATTPDELYKDHMVYTKHLTWNPLGSQAEIFGNKPPRPVH 312
Query: 146 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
DDI++ KLR GQE+ L+ + KG G+ HAK++P A
Sbjct: 313 DDIILAKLRPGQEIDLKLHCVKGTGQVHAKFSPVA 347
>gi|288560165|ref|YP_003423651.1| DNA-directed RNA polymerase subunit D RpoD [Methanobrevibacter
ruminantium M1]
gi|288542875|gb|ADC46759.1| DNA-directed RNA polymerase subunit D RpoD [Methanobrevibacter
ruminantium M1]
Length = 282
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 95/178 (53%), Gaps = 32/178 (17%)
Query: 16 DEN-VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT 74
DEN + F V D E+ N++RR+ + P +AI+ V + N + + DE +A R+GL PL
Sbjct: 9 DENSMVFIVRDAEVPFINAIRRIAMMRVPKLAIEDVFIVKNDSAMFDEVLAHRLGLTPLV 68
Query: 75 SD-EVVDRILYSRDCTC-----------VDFCSECSVEFTLDVKCVDDQTRHVTTADLKS 122
SD E ++ ++ DC C ++C CSV F+L+ + + V + DLKS
Sbjct: 69 SDLESIEGLVMREDCDCNHDENGNYVDKGEYCPRCSVSFSLN----ETGPKVVYSRDLKS 124
Query: 123 T-DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
D+R+ PV D I ++KL++ Q++ L A AK G GKEHAKW PT
Sbjct: 125 CGDSRIKPV--------------YDTIPLLKLKEDQDVELEAVAKLGIGKEHAKWVPT 168
>gi|407461953|ref|YP_006773270.1| RNA polymerase insert [Candidatus Nitrosopumilus koreensis AR1]
gi|407045575|gb|AFS80328.1| RNA polymerase insert [Candidatus Nitrosopumilus koreensis AR1]
Length = 221
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 88/172 (51%), Gaps = 19/172 (11%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
S+ + ++ + +++ L AN+LRRV + P AID V + N++VL DE +A R
Sbjct: 12 SLEVISKDNQKIALKLKGVPLQYANALRRVCLNGVPVFAIDTVDIIENTSVLPDEGLAHR 71
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
+GLIPL +D + R C C CS C V LD D TR V + ++ S D
Sbjct: 72 LGLIPLKTD--LSRFNEPSKCECQSEAGCSNCKVMLVLD-SGDSDVTRTVLSNEISSEDD 128
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
+ P+ +D I IV+L GQ++++ YA+ G G EHAKWN
Sbjct: 129 SITPI--------------SDKIPIVELAPGQKIKIECYARLGRGTEHAKWN 166
>gi|308159629|gb|EFO62154.1| DNA-directed RNA polymerase RPB3 [Giardia lamblia P15]
Length = 326
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 95/180 (52%), Gaps = 8/180 (4%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
PS+ + TD ++ ++ ++S N LRR A+ PT++ID V+ N+T L++EFIA
Sbjct: 2 NPSIKVLSKTDLKLELEISGVDISYVNGLRRAIYADVPTLSIDIVKFLDNNTTLTEEFIA 61
Query: 66 SRIGLIPLTSDEVVDRILYSRDC-----TCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
R+GLIPL + + I Y C T ++ C EC+ + TL++ + R VT D+
Sbjct: 62 HRLGLIPLKTAGPLSAISYWYTCDEEHSTEIE-CRECTFKGTLNISNDSTKIRVVTDKDI 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D + S ++ + ET I I+KL G+ + YA+K GK HAKW P A
Sbjct: 121 H-FDHGGISTLSNYLESSLG-VTETPSIPILKLAPGESINALLYARKDRGKIHAKWCPAA 178
>gi|397779749|ref|YP_006544222.1| DNA-directed RNA polymerase subunit D [Methanoculleus bourgensis
MS2]
gi|396938251|emb|CCJ35506.1| DNA-directed RNA polymerase subunit D [Methanoculleus bourgensis
MS2]
Length = 276
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 89/166 (53%), Gaps = 22/166 (13%)
Query: 16 DENV-KFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT 74
DE V KF + S AN LRR ++E PT+AI+ +++ N++VL DE +A R+GLIPL
Sbjct: 9 DERVAKFTISSVSTSFANMLRRAMMSEVPTLAIEDIRIYDNTSVLFDEMLAHRLGLIPLR 68
Query: 75 SDEVVDRILYSRDCTCVDF-CSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSR 133
+D +DR + +CTC C C+ +TL V + + V ++DL D P
Sbjct: 69 TD--LDRYVTRAECTCEGAGCPVCTATYTLSV----EGPKTVYSSDLIPQDPDAAPA--- 119
Query: 134 NRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
++I I+ L K Q++ L AYA G GKEHAKW T
Sbjct: 120 -----------EEEIPIIDLDKDQKVVLEAYAVIGTGKEHAKWQAT 154
>gi|297840495|ref|XP_002888129.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata]
gi|297333970|gb|EFH64388.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata]
Length = 385
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 96/193 (49%), Gaps = 25/193 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + LT+ + F + +AN+ RR+ +AE P+MAI+ V + N++V+ DE +A R+
Sbjct: 83 VDVISLTETYMVFDMIGVPAGIANAFRRILLAELPSMAIEKVFVANNTSVIQDEVLAHRL 142
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV-DDQTRHVTTADLK------ 121
GLIP+ +D + L D + ++ F L VKC D R V T++LK
Sbjct: 143 GLIPIAADPRLFEYLSENDQP----NEKNTIVFKLHVKCPKGDPRRKVLTSELKWLPNGS 198
Query: 122 ---------STDARVVPVTSRNRD-----ADMNEYGETDDILIVKLRKGQELRLRAYAKK 167
+T + S ++D A DILI KL GQE+ L A+A K
Sbjct: 199 ELVKESGGLTTKPKTYTSFSHSQDSFPGFAKNPITPSFQDILIAKLGPGQEIELEAHAVK 258
Query: 168 GFGKEHAKWNPTA 180
G GK HAKW+P A
Sbjct: 259 GIGKTHAKWSPVA 271
>gi|146164033|ref|XP_001012875.2| DNA-directed RNA polymerase I 40 kDa polypeptide [Tetrahymena
thermophila]
gi|146145882|gb|EAR92630.2| DNA-directed RNA polymerase I 40 kDa polypeptide [Tetrahymena
thermophila SB210]
Length = 336
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 20/182 (10%)
Query: 13 DLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIP 72
D ++ ++F + + +AN+LRR+ IAE PTMAI V + N++++ DE +A R+GLIP
Sbjct: 52 DNKNKELEFDLMGVDAPIANALRRIMIAEVPTMAIHKVYIYQNTSIIPDEVLAHRLGLIP 111
Query: 73 LTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV-DDQTRHVTTADLK---------- 121
+ +D L+ ++ + S++FTL +KC +Q ++ + ADL+
Sbjct: 112 IYADPR----LFEEKQEEDEYNEKNSLKFTLKIKCSKKEQYKNYSEADLENLTPETYLEN 167
Query: 122 ----STDARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
S D + V +N+ + N D+I++ KLR+ QE+ +KG GK HAKW
Sbjct: 168 AIVYSGDFKWVSQGEQNKKFEENPIRMVHDNIIVAKLRENQEIICEVICQKGIGKTHAKW 227
Query: 177 NP 178
+P
Sbjct: 228 SP 229
>gi|393796020|ref|ZP_10379384.1| RNA polymerase insert [Candidatus Nitrosoarchaeum limnia BG20]
Length = 212
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 88/174 (50%), Gaps = 19/174 (10%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
S+ + + ++ + +++ L AN+LRR+ + P AID V + NS+VL DE +A R
Sbjct: 3 SLEVINKDNQKISIKLKGVPLQYANALRRICLNGIPVFAIDTVDIIENSSVLPDEGLAHR 62
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
+GLIPL +D + R C C CS C V LD D TR + + +L S D
Sbjct: 63 LGLIPLQTD--LSRFNEPSKCDCKSETGCSNCKVMLVLD-SGDSDVTRTILSNELTSEDE 119
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
V P +D I IV+L GQ +++ YA+ G G EHAKWN +
Sbjct: 120 SVKPT--------------SDKIPIVQLAAGQRIKVECYARLGRGTEHAKWNSS 159
>gi|329766306|ref|ZP_08257853.1| RNA polymerase insert [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329137208|gb|EGG41497.1| RNA polymerase insert [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 212
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 88/174 (50%), Gaps = 19/174 (10%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
S+ + + ++ + +++ L AN+LRR+ + P AID V + NS+VL DE +A R
Sbjct: 3 SLEVINKDNQKISIKLKGVPLQYANALRRICLNGIPVFAIDTVDIIENSSVLPDEGLAHR 62
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
+GLIPL +D + R C C CS C V LD D TR + + +L S D
Sbjct: 63 LGLIPLQTD--LSRFNEPSKCDCKSETGCSNCKVMLVLD-SGDSDVTRTILSNELTSEDE 119
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
V P +D I IV+L GQ +++ YA+ G G EHAKWN +
Sbjct: 120 SVKPT--------------SDKIPIVQLAAGQRIKVECYARLGRGTEHAKWNSS 159
>gi|427788233|gb|JAA59568.1| Putative rna polymerase i and iii subunit [Rhipicephalus
pulchellus]
Length = 344
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 95/182 (52%), Gaps = 14/182 (7%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I + D ++F + + S+AN++RR+ +AE PTMA D V L N+ ++ DE +A RI
Sbjct: 48 VGIISMDDTTIEFDLVGLDPSIANAIRRILLAEVPTMAPDKVYLYNNTGIIQDEVLAHRI 107
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQ--TRHVTTADLKSTDAR 126
GL+P D R+ R+ D E +VEF L VKC + + TT D D
Sbjct: 108 GLVPFNIDP---RMFEYRESES-DGSPEDTVEFELKVKCTKNPQAPKDATTPDELYKDHM 163
Query: 127 VVP--VTSRNRDADMNEYGET------DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
V +T + +G DDI++ KLR GQE+ L+ + KG G+ HAK++P
Sbjct: 164 VYTKHLTWNPLGSQAEIFGNKPPRPVHDDIILAKLRPGQEIDLKLHCVKGTGQVHAKFSP 223
Query: 179 TA 180
A
Sbjct: 224 VA 225
>gi|14520746|ref|NP_126221.1| DNA-directed RNA polymerase subunit D [Pyrococcus abyssi GE5]
gi|13124531|sp|Q9V198.1|RPOD_PYRAB RecName: Full=DNA-directed RNA polymerase subunit D
gi|5457962|emb|CAB49452.1| rpoD DNA-directed RNA polymerase, subunit D [Pyrococcus abyssi GE5]
gi|380741285|tpe|CCE69919.1| TPA: DNA-directed RNA polymerase subunit D [Pyrococcus abyssi GE5]
Length = 259
Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 87/170 (51%), Gaps = 25/170 (14%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I TD+++ F +E +++ AN+LRR + E PT A+D V+ N + L DE IA R+
Sbjct: 4 IKILKKTDDSITFILEGVDVAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHRL 63
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
+IPL + VDR + D +D ++T+ + + V + DLKS D V
Sbjct: 64 AMIPLKTP--VDR--FELDALELD-------DYTVTLSLEAEGPGIVYSGDLKSDDPDVK 112
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
P DI IVKL KGQ L A+AK G GK+HAKW P
Sbjct: 113 PANP--------------DIPIVKLAKGQRLVFNAFAKLGRGKDHAKWQP 148
>gi|449541898|gb|EMD32879.1| hypothetical protein CERSUDRAFT_160889 [Ceriporiopsis subvermispora
B]
Length = 364
Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 95/177 (53%), Gaps = 11/177 (6%)
Query: 11 ITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGL 70
+ L+ +++F + + S+AN+ RR+ IAE PTMAI+ V + N++V+ DE +A R+GL
Sbjct: 58 VKRLSQRSIEFDLVGVDASIANAFRRILIAEVPTMAIEHVYVWNNTSVIQDEVLAQRLGL 117
Query: 71 IPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKC--VDDQTRHVTTAD----LKSTD 124
IPL D R+ R T ++ F L+V C + + R T+ ++S D
Sbjct: 118 IPLDVD---PRMFEFRTQTDTP-TDRNTLVFQLNVTCERMKNAPRGSTSQHKHEYVRSED 173
Query: 125 ARVVPVTSRN-RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
VP + AD +I++ KL GQE+ + +A KG GKEHAKWNP A
Sbjct: 174 LEWVPQGEQEVVFADKPPAPTNKEIVLAKLAPGQEINVELHAIKGVGKEHAKWNPVA 230
>gi|298674771|ref|YP_003726521.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
gi|298287759|gb|ADI73725.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
Length = 265
Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 92/168 (54%), Gaps = 19/168 (11%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + +L++ + +F + +T + ANS+RR +A+ PT AID + + N++VL DE + R+
Sbjct: 5 VDMLELSERSARFVLSNTTPAFANSIRRAMLADVPTFAIDDLNIYNNTSVLYDEQLGLRL 64
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
LIPL + E +D +CTC + C C V TL + + V + DL S+D +
Sbjct: 65 ALIPLAT-ENIDDYTTQDECTCEEGCPSCEVSITLSA----EGPKMVYSGDLISSDPGIQ 119
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
P AD N I I++L++ Q + L A A KG GK++AKW
Sbjct: 120 P-------ADTN-------IPIIELKEDQRVVLEALAHKGLGKDNAKW 153
>gi|363807500|ref|NP_001242652.1| uncharacterized protein LOC100786622 [Glycine max]
gi|255637183|gb|ACU18922.1| unknown [Glycine max]
Length = 388
Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 99/195 (50%), Gaps = 26/195 (13%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + LTD +++F + + ++AN+ RR+ IAE PTMAI+ V + N++V+ DE ++ R+
Sbjct: 83 VEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSVVQDEVLSHRL 142
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTAD-LK-STDAR 126
GLIP+ +D R+ + D + ++ F L V+C Q R +D LK +
Sbjct: 143 GLIPIRADP---RLFEYPENAGDDKNEKNTIVFKLHVRCQVGQPRITVKSDKLKWLPNGS 199
Query: 127 VVPVTSRNRDADM--------------------NEYGET-DDILIVKLRKGQELRLRAYA 165
+P +A N G T DI++ KL GQE+ L A+A
Sbjct: 200 ELPCEGVKPNAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIILAKLGPGQEIELEAHA 259
Query: 166 KKGFGKEHAKWNPTA 180
KG GK HAKW+P A
Sbjct: 260 VKGIGKTHAKWSPVA 274
>gi|15922388|ref|NP_378057.1| DNA-directed RNA polymerase subunit D [Sulfolobus tokodaii str. 7]
gi|20978711|sp|Q96YW0.1|RPOD_SULTO RecName: Full=DNA-directed RNA polymerase subunit D
gi|15623177|dbj|BAB67166.1| DNA-directed RNA polymerase subunit D [Sulfolobus tokodaii str. 7]
Length = 264
Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 89/173 (51%), Gaps = 17/173 (9%)
Query: 11 ITDLTDEN--VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
I+ L+ EN +K V + L + NS+RR I P MA+D V N++ L DE +A R+
Sbjct: 3 ISLLSKENNSLKLIVGNYPLELVNSIRRASILYVPVMAVDEVYFIENNSPLYDEILAHRL 62
Query: 69 GLIPLTSDEVVDRILYSRDCT-CVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
+IP +SDE +D +C C + C C LDV + +T V + DLK+ D +
Sbjct: 63 AMIPFSSDEALDHYRPPEECAECKENCDGCYARVYLDVGANEGETVMVYSRDLKTDDPAI 122
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
VP++ +I IV L Q++ L A + G+GKEH K++P +
Sbjct: 123 VPISG--------------NIPIVLLGPKQKVTLEARLRLGYGKEHIKFSPVS 161
>gi|146412650|ref|XP_001482296.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 333
Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 96/182 (52%), Gaps = 10/182 (5%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
++I+ LT+ F + + + SVAN+ RR+ I+E P++A + V + N++V+ DE +A RI
Sbjct: 42 INISHLTERTANFDLINIDTSVANAFRRIMISEVPSVAAESVYIFNNTSVIQDEVLAHRI 101
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK------S 122
GLIPL D + + F E ++ +LD+ C + + D K
Sbjct: 102 GLIPLKVDPDLLSWVDPAQDEKEKFTDENTIVLSLDIACTKNPHPPAGSTDPKDLYRNAH 161
Query: 123 TDARVVPVTSRNRDADM---NEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
AR + + R D+ N TD DILI KLR GQE+ LRA+ G G +HAK++P
Sbjct: 162 VYARDLKFEPQGRQVDLFKNNPVVPTDPDILIAKLRPGQEISLRAHCILGIGSDHAKFSP 221
Query: 179 TA 180
+
Sbjct: 222 VS 223
>gi|190348712|gb|EDK41218.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 333
Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 96/182 (52%), Gaps = 10/182 (5%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
++I+ LT+ F + + + SVAN+ RR+ I+E P++A + V + N++V+ DE +A RI
Sbjct: 42 INISHLTERTANFDLINIDTSVANAFRRIMISEVPSVAAESVYIFNNTSVIQDEVLAHRI 101
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK------S 122
GLIPL D + + F E ++ +LD+ C + + D K
Sbjct: 102 GLIPLKVDPDLLSWVDPAQDEKEKFTDENTIVLSLDIACTKNPHPPAGSTDPKDLYRNAH 161
Query: 123 TDARVVPVTSRNRDADM---NEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
AR + + R D+ N TD DILI KLR GQE+ LRA+ G G +HAK++P
Sbjct: 162 VYARDLKFEPQGRQVDLFKNNPVVPTDPDILIAKLRPGQEISLRAHCILGIGSDHAKFSP 221
Query: 179 TA 180
+
Sbjct: 222 VS 223
>gi|255716882|ref|XP_002554722.1| KLTH0F12056p [Lachancea thermotolerans]
gi|238936105|emb|CAR24285.1| KLTH0F12056p [Lachancea thermotolerans CBS 6340]
Length = 350
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 10/188 (5%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ N V+IT L D F + + + S+AN+ RR+ IAE P++A ++V N++V+ DE
Sbjct: 52 FKNTFDVNITSLDDREANFDLVNVDASIANAFRRIMIAEVPSVAAEYVYFFNNTSVIQDE 111
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV--DDQTRHVT---- 116
+A RIGL PL D + + + F E ++ TL+V+C D + T
Sbjct: 112 VLAHRIGLTPLKVDPDMLSWVDTSVPEAERFTDENTIVLTLNVRCTRNPDAPKDCTDPKI 171
Query: 117 ---TADLKSTDARVVPVTSRNRDADMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGKE 172
A + + D + P + N D DIL+ KLR GQE+ LRA+ G G +
Sbjct: 172 LYRNAHIYARDLKFEPQGKQRETFAKNPVVPADPDILLAKLRPGQEISLRAHCVLGIGSD 231
Query: 173 HAKWNPTA 180
HAK++P +
Sbjct: 232 HAKFSPVS 239
>gi|18312091|ref|NP_558758.1| DNA-directed RNA polymerase subunit D (rpoD) [Pyrobaculum
aerophilum str. IM2]
gi|20978701|sp|Q8ZYQ3.1|RPOD_PYRAE RecName: Full=DNA-directed RNA polymerase subunit D
gi|18159521|gb|AAL62940.1| DNA-directed RNA polymerase subunit D (rpoD) [Pyrobaculum
aerophilum str. IM2]
Length = 260
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 86/160 (53%), Gaps = 19/160 (11%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
+K VE S+ NSLRRV I+E P MAID V + N++V+ DE +A R+GLIPLT+
Sbjct: 14 LKAVVEGVPPSLVNSLRRVIISELPVMAIDNVVVVNNTSVMYDEMLAHRLGLIPLTTP-- 71
Query: 79 VDRILYSRDC-TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDA 137
+ + DC + + SECS TL V D T + + DL S VVPV
Sbjct: 72 LQSLPPYEDCVSGLADPSECSTRLTLQVTAEGDTT--IYSGDLASDRPDVVPVYK----- 124
Query: 138 DMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
DI IVKL KGQ + L AYAK G K+HAKW
Sbjct: 125 ---------DIPIVKLVKGQSIVLEAYAKLGVAKDHAKWQ 155
>gi|409096145|ref|ZP_11216169.1| DNA-directed RNA polymerase subunit D [Thermococcus zilligii AN1]
Length = 260
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 90/173 (52%), Gaps = 25/173 (14%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
+P I + ++++KF + +++ AN+LRR +AE PT A+D V+ N + L DE IA
Sbjct: 2 EPKFEILEKREDSLKFILRGVDVAFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIA 61
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+ +IPLT+ +S D +D ++T+ + + V + DLKS D
Sbjct: 62 HRLAMIPLTT----PYTRFSLDSLELD-------DYTVTLSLQAEGPGVVYSGDLKSDDP 110
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+ P +I IVKL +GQ+L L AYA+ G GK+HAKW P
Sbjct: 111 EIKPANP--------------NIPIVKLAEGQKLALNAYARLGRGKDHAKWQP 149
>gi|118431575|ref|NP_148137.2| DNA-directed RNA polymerase subunit D [Aeropyrum pernix K1]
gi|150421654|sp|Q9YB53.2|RPOD_AERPE RecName: Full=DNA-directed RNA polymerase subunit D
gi|116062900|dbj|BAA80745.2| DNA-directed RNA polymerase subunit D [Aeropyrum pernix K1]
Length = 286
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 17/176 (9%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
SV + +L V+ ++ + N++RR +++ PTMA+D+ + N+T + DE +A R
Sbjct: 8 SVEVVELDSLRVRLRIRGYPVVFVNAIRRTVLSDVPTMAVDYAYIFDNTTAVYDEMVAHR 67
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVDFCSE-CSVEFTL--DVKCVDDQTRHVTTADLKSTD 124
+GL+ L S+E V++ +C + E C VE +L +V + R++T DL +D
Sbjct: 68 LGLVVLDSNEAVEKYRRPEECAGKEPSEEDCFVEVSLEAEVDAEGETGRYITAGDLSISD 127
Query: 125 ARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+V PV Y ET I + GQ + ++A+A+ G GKEH KW+P +
Sbjct: 128 PQVKPV-----------YPETPLIYVA---PGQRIHVQAFARLGRGKEHTKWSPAS 169
>gi|384488271|gb|EIE80451.1| hypothetical protein RO3G_05156 [Rhizopus delemar RA 99-880]
Length = 247
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 97/184 (52%), Gaps = 18/184 (9%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I L+ +V+F + + S+AN+ RR+ IAE PTMAI+ V + N++++ DE +A R+
Sbjct: 45 VKIQRLSKHSVEFDLIGVDASIANAFRRIMIAEVPTMAIEKVYVMNNTSIIQDEVVAHRL 104
Query: 69 GLIPLTSDEVVDRILY-SRDCTCVDFCSECSVEFTLDVKC----------VDDQTRHVTT 117
GLIP+ +D + Y + D D ++ F L KC D +++ +
Sbjct: 105 GLIPILADP--NEFDYMAEDGGPTDL---NTLVFRLKKKCEFNPEASPDETDPHKKYINS 159
Query: 118 ADLKSTDARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
+ S D P ++ N DDI+I KLR GQE+ + + +KG G+EHAKW
Sbjct: 160 Y-VYSKDLIWEPKGNQEEKFAANPPRPVHDDIVIAKLRPGQEMEMELHCQKGVGREHAKW 218
Query: 177 NPTA 180
+P A
Sbjct: 219 SPVA 222
>gi|307352912|ref|YP_003893963.1| DNA-directed RNA polymerase [Methanoplanus petrolearius DSM 11571]
gi|307156145|gb|ADN35525.1| DNA-directed RNA polymerase [Methanoplanus petrolearius DSM 11571]
Length = 274
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 21/172 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ + L ++ +F ++D + AN+ RR I E PT+AI+ V + N++ L DE +A R+
Sbjct: 3 ISFSRLDEDIARFTLKDATPAFANTFRRTMIGEVPTLAIEDVLIYDNNSALFDEMLAHRL 62
Query: 69 GLIPLTSDEVVDRILYSRDCTC-VDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
GLIP+ +D + + +C+C + CS C FTL V + V ++DL D R
Sbjct: 63 GLIPIKTD--LSEYVKKSECSCGGEGCSSCQAIFTLSV----EGPGTVHSSDLIPADPRA 116
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
PV DI +VKL K Q++ L A A+ G EHAKW PT
Sbjct: 117 TPVNM--------------DIPVVKLEKDQKVVLEARAELNIGDEHAKWEPT 154
>gi|19113623|ref|NP_596831.1| DNA-directed RNA polymerase I and III subunit Rpc40
[Schizosaccharomyces pombe 972h-]
gi|13124507|sp|O94616.1|RPAC1_SCHPO RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=RNA polymerases I and III subunit AC1; AltName:
Full=DNA-directed RNA polymerases I and III 40 kDa
polypeptide; Short=AC40; AltName: Full=RPC39
gi|5531859|gb|AAD44503.1|AF082512_1 RNA polymerase subunit Rpc40 [Schizosaccharomyces pombe]
gi|4490662|emb|CAB38687.1| DNA-directed RNA polymerase I and III subunit Rpc40
[Schizosaccharomyces pombe]
gi|4760696|dbj|BAA77385.1| RPA42 [Schizosaccharomyces pombe]
Length = 348
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 101/186 (54%), Gaps = 17/186 (9%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V IT L E + F++ + S+AN+ RR+ IAE PT+A ++V + N++++ DE ++ RI
Sbjct: 48 VSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRI 107
Query: 69 GLIPLTSD----EVVDRILYSRDCTCVDFCSECSVEFTLDVKC---------VDDQTRHV 115
GL+P+++D + L ++ T D+ +V F+L+ KC D R
Sbjct: 108 GLVPISADPDMFKWFQHPLPGQEATHTDY---DTVVFSLNKKCEFNKNAATDEKDPKRLY 164
Query: 116 TTADLKSTDARVVPVTSR-NRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
+++ S D P + R AD DI++ KLR GQE+ L A+A G G++HA
Sbjct: 165 VNSEVYSGDLIWKPQGRQEERFADNPIRVVNPDIVVAKLRPGQEIDLEAHAILGIGQDHA 224
Query: 175 KWNPTA 180
K++P A
Sbjct: 225 KFSPVA 230
>gi|282164928|ref|YP_003357313.1| DNA-directed RNA polymerase subunit D [Methanocella paludicola
SANAE]
gi|282157242|dbj|BAI62330.1| DNA-directed RNA polymerase subunit D [Methanocella paludicola
SANAE]
Length = 262
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 96/172 (55%), Gaps = 21/172 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I +L D KF + + + AN++RR +A+ P MAID+V + N++V+ DE +A R+
Sbjct: 3 LEILELGDRKAKFVLSEVTPAFANAVRRAMLADIPKMAIDYVDIYDNTSVMFDEMLAHRM 62
Query: 69 GLIPLTSDEVVDRILYSRDCTCV-DFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
GLIP+ ++ +D +C C + C+ C V FTL + V + D+KS+D
Sbjct: 63 GLIPIKTN--LDMYKLREECDCKGEGCALCQVSFTLSA----EGPCMVHSRDMKSSDPDT 116
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
VP AD D++ I++L++ Q++ L A A+ G GKEH+K+ P
Sbjct: 117 VP-------AD-------DNVPIIELKERQKVVLTAVARLGRGKEHSKFQPV 154
>gi|242398333|ref|YP_002993757.1| DNA-directed RNA polymerase subunit D [Thermococcus sibiricus MM
739]
gi|242264726|gb|ACS89408.1| DNA-directed RNA polymerase subunit D [Thermococcus sibiricus MM
739]
Length = 271
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 86/171 (50%), Gaps = 25/171 (14%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
+ I + D+ ++F +E +++ AN+LRR I E PT AID V+ N + L DE IA R
Sbjct: 15 QIKILEKRDDAIRFILEGMDIAFANALRRTIIGEVPTFAIDEVEFYENDSALFDEIIAHR 74
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
+ LIPLT+ DR + S ++T+ + + V + DLKS D V
Sbjct: 75 LSLIPLTTP--FDRF---------ELESMELEDYTVTLSLEAEGPAIVYSGDLKSDDPDV 123
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
PV +I IVKL +GQ L AYAK G GK+HAKW P
Sbjct: 124 KPVNP--------------NIPIVKLAEGQRLVFNAYAKMGKGKDHAKWQP 160
>gi|159041731|ref|YP_001540983.1| RNA polymerase insert [Caldivirga maquilingensis IC-167]
gi|157920566|gb|ABW01993.1| RNA polymerase insert [Caldivirga maquilingensis IC-167]
Length = 305
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 92/172 (53%), Gaps = 20/172 (11%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
SV + +D+ +KF VE + S+ NSLRR+ I + P +AID V + N+TV+ DE +A R
Sbjct: 6 SVKVLQYSDDYLKFVVEGVKPSLINSLRRILITDVPVLAIDRVIVLDNTTVMYDEVLAHR 65
Query: 68 IGLIPLTSDEVVDRILYSRDC--TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
+ +IPL ++ ++++ +C VD S C V + L +K +DQ V DL D
Sbjct: 66 LSMIPLKTN--LEKLPKIEECEDELVD-PSLCQVRYQLSIK-ANDQVVSVYAKDLIPDDP 121
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
PV D LIVK+ KGQ L + AYAK G ++HAKW
Sbjct: 122 DFAPVYP--------------DTLIVKMSKGQVLSIEAYAKLGRARDHAKWQ 159
>gi|1914859|emb|CAA71570.1| homologous to 40kD subunit of RNA-polymerase I and III [Cricetulus
griseus]
Length = 347
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 101/186 (54%), Gaps = 17/186 (9%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V IT L E + F++ + S+AN+ RR+ IAE PT+A ++V + N++++ DE ++ RI
Sbjct: 47 VSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRI 106
Query: 69 GLIPLTSD----EVVDRILYSRDCTCVDFCSECSVEFTLDVKC---------VDDQTRHV 115
GL+P+++D + L ++ T D+ +V F+L+ KC D R
Sbjct: 107 GLVPISADPDMFKWFQHPLPGQEATHTDY---DTVVFSLNKKCEFNKNAATDEKDPKRLY 163
Query: 116 TTADLKSTDARVVPVTSR-NRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
+++ S D P + R AD DI++ KLR GQE+ L A+A G G++HA
Sbjct: 164 VNSEVYSGDLIWKPQGRQEERFADNPIRVVNPDIVVAKLRPGQEIDLEAHAILGIGQDHA 223
Query: 175 KWNPTA 180
K++P A
Sbjct: 224 KFSPVA 229
>gi|379005500|ref|YP_005261172.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Pyrobaculum oguniense TE7]
gi|375160953|gb|AFA40565.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Pyrobaculum oguniense TE7]
Length = 273
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 88/171 (51%), Gaps = 17/171 (9%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + + +K VE S+ NSLRRV I+E P MAID V + N++V+ DEF+A
Sbjct: 16 PRVSIVEKSQLFLKAIVEGVPPSLVNSLRRVIISELPVMAIDTVVVVNNTSVMYDEFLAQ 75
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPLT+ + Y T V +EC L V D T V + DL S
Sbjct: 76 RLGLIPLTTP-LHSLPTYEECATGVADPTECGTRLVLQVTADGDVT--VYSGDLASERPD 132
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
VVPV DI IVKL KGQ + + AYAK G K+HAKW
Sbjct: 133 VVPVYK--------------DIPIVKLVKGQSIVIEAYAKLGIAKDHAKWQ 169
>gi|452210696|ref|YP_007490810.1| DNA-directed RNA polymerase subunit D [Methanosarcina mazei Tuc01]
gi|452100598|gb|AGF97538.1| DNA-directed RNA polymerase subunit D [Methanosarcina mazei Tuc01]
Length = 258
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 22/171 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I +L+D + KF + ++ AN +RR IA+ PT+AI++V L N++VL DE +A R+
Sbjct: 5 VDILELSDRSAKFVLSRVSMAFANGVRRAMIADVPTLAIEYVNLYDNTSVLYDEQLALRL 64
Query: 69 GLIPLTSDEVVDRILYSRDCTCV--DFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
LIPL +D ++ + +C + C C V TL + V + DL S+D +
Sbjct: 65 SLIPLVTD--IETYMPQAECEVCGGEGCPACEVSLTLSA----EGPGTVYSRDLISSDPK 118
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
+ P AD N I IV+L+KGQ+L L A A G+G++ KW
Sbjct: 119 IQP-------ADPN-------IPIVELKKGQKLVLEAIAHMGYGRDSVKWQ 155
>gi|21228260|ref|NP_634182.1| DNA-directed RNA polymerase subunit D [Methanosarcina mazei Go1]
gi|23822085|sp|Q8PV16.1|RPOD_METMA RecName: Full=DNA-directed RNA polymerase subunit D
gi|20906717|gb|AAM31854.1| DNA-directed RNA polymerase subunit D [Methanosarcina mazei Go1]
Length = 266
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 22/171 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I +L+D + KF + ++ AN +RR IA+ PT+AI++V L N++VL DE +A R+
Sbjct: 5 VDILELSDRSAKFVLSRVSMAFANGVRRAMIADVPTLAIEYVNLYDNTSVLYDEQLALRL 64
Query: 69 GLIPLTSDEVVDRILYSRDCTCV--DFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
LIPL +D ++ + +C + C C V TL + V + DL S+D +
Sbjct: 65 SLIPLVTD--IETYMPQAECEVCGGEGCPACEVSLTLSA----EGPGTVYSRDLISSDPK 118
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
+ P AD N I IV+L+KGQ+L L A A G+G++ KW
Sbjct: 119 IQP-------ADPN-------IPIVELKKGQKLVLEAIAHMGYGRDSVKWQ 155
>gi|223477958|ref|YP_002582352.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. AM4]
gi|214033184|gb|EEB74012.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. AM4]
Length = 260
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 89/173 (51%), Gaps = 25/173 (14%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
+P I + + +KF + ++ AN+LRR +AE PT A+D V+ N + L DE IA
Sbjct: 2 EPKFEILERRGDAIKFILRGVDVPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIA 61
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+ +IPLT+ V+R +S D +D ++T+ + + V + DLKS D
Sbjct: 62 HRLAMIPLTTP--VER--FSLDSLDLD-------DYTVTLSLQAEGPGMVYSGDLKSDDE 110
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
V P +I IVKL +GQ+L AYA+ G GK+HAKW P
Sbjct: 111 GVKPANP--------------NIPIVKLAEGQKLTFNAYARLGRGKDHAKWQP 149
>gi|73667627|ref|YP_303642.1| DNA-directed RNA polymerase subunit D [Methanosarcina barkeri str.
Fusaro]
gi|72394789|gb|AAZ69062.1| DNA-directed RNA polymerase, subunit D [Methanosarcina barkeri str.
Fusaro]
Length = 266
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 91/171 (53%), Gaps = 22/171 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I +L+D + KF + S AN +RR IA+ PT+AI++V L N++VL DE +A R+
Sbjct: 5 VDILELSDRSAKFVLSKVSTSFANGIRRAMIADVPTLAIEYVNLYENTSVLYDEQLALRL 64
Query: 69 GLIPLTSDEVVDRILYSRDCTCV--DFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
LIPL +D V+ + +C + C C V TL + V + DL S+D +
Sbjct: 65 SLIPLVTD--VETYVPQAECDVCGGEGCPACEVSLTLSA----EGPCTVYSRDLISSDPK 118
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
+ P AD N I IV+L+KGQ+L L A A G+G++ KW
Sbjct: 119 IQP-------ADPN-------IPIVELKKGQKLVLEALAHMGYGRDSVKWQ 155
>gi|409045867|gb|EKM55347.1| hypothetical protein PHACADRAFT_161317 [Phanerochaete carnosa
HHB-10118-sp]
Length = 364
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 94/178 (52%), Gaps = 13/178 (7%)
Query: 11 ITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGL 70
+ L+ +++F + + S+AN+ RR+ IAE PT+AI+ V + N++V+ DE +A RIGL
Sbjct: 51 VQRLSQWSIEFDLVGVDASIANAFRRIMIAEVPTIAIEHVYVWNNTSVIHDEVLAHRIGL 110
Query: 71 IPLTSDEVVDRILYSRDCTCVDFCSECS----VEFTLDVKC---VDDQTRHVTTADLKST 123
+ ++D I T F + S + F L V C + ++KS
Sbjct: 111 VQPSADPSTLEIR-----TPTGFGATPSDRNTLVFRLQVTCERAPKGSGKEYINDEVKSG 165
Query: 124 DARVVPVTSRNRDADMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D VP + N G T+ DI++ KLR GQE+ + +A KG GKEHAKW+P A
Sbjct: 166 DLVWVPQGEQEEVFANNPPGPTNKDIVLAKLRPGQEIDMELHAIKGVGKEHAKWSPVA 223
>gi|145592521|ref|YP_001154523.1| RNA polymerase, insert [Pyrobaculum arsenaticum DSM 13514]
gi|166229319|sp|A4WNA4.1|RPOD_PYRAR RecName: Full=DNA-directed RNA polymerase subunit D
gi|145284289|gb|ABP51871.1| DNA-directed RNA polymerase, subunit D [Pyrobaculum arsenaticum DSM
13514]
Length = 259
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 88/172 (51%), Gaps = 17/172 (9%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
P V I + + +K VE S+ NSLRRV I+E P MAID V + N++V+ DEF+A
Sbjct: 1 MPRVSIVEKSQLFLKAIVEGVPPSLVNSLRRVIISELPVMAIDTVVVVNNTSVMYDEFLA 60
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+GLIPLT+ + Y T V +EC L V D T V + DL S
Sbjct: 61 QRLGLIPLTTP-LHSLPTYEECATGVADPTECGTRLVLQVTADGDVT--VYSGDLTSERP 117
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
VVPV DI IVKL KGQ + + AYAK G K+HAKW
Sbjct: 118 DVVPVYK--------------DIPIVKLVKGQSIVIEAYAKLGIAKDHAKWQ 155
>gi|384495741|gb|EIE86232.1| hypothetical protein RO3G_10943 [Rhizopus delemar RA 99-880]
Length = 247
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 99/184 (53%), Gaps = 18/184 (9%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I L+ +V+F + + S+AN+ RR+ IAE PTMAI+ V + N++++ DE +A R+
Sbjct: 45 VKIQRLSKHSVEFDLIGIDASIANAFRRIMIAEVPTMAIEKVYVMNNTSIIQDEVVAHRL 104
Query: 69 GLIPLTSD-EVVDRILYSRDCTCVDFCSECSVEFTLDVKC----------VDDQTRHVTT 117
GLIP+ +D + D + + D D ++ F L KC D +++ +
Sbjct: 105 GLIPILADPKEFDYM--TEDGGPTDL---NTLVFRLKKKCEFNPEASPDETDPHKKYINS 159
Query: 118 ADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
+ S D P ++ A+ DDI+I KLR GQE+ + + +KG G+EHAKW
Sbjct: 160 Y-VYSKDLIWEPKGNQEEKFANNPPRPVHDDIVIAKLRPGQEMEMELHCQKGVGREHAKW 218
Query: 177 NPTA 180
+P A
Sbjct: 219 SPVA 222
>gi|332157864|ref|YP_004423143.1| DNA-directed RNA polymerase subunit D [Pyrococcus sp. NA2]
gi|331033327|gb|AEC51139.1| DNA-directed RNA polymerase subunit D [Pyrococcus sp. NA2]
Length = 259
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 88/171 (51%), Gaps = 25/171 (14%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
+ I T++++ F +E ++ ANSLRR + E PT A+D V+ N + L DE IA R
Sbjct: 3 KIKILKKTEDSITFLLEGVSVAFANSLRRTILGEVPTFAVDEVEFYENDSALFDEIIAHR 62
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
+ +IPL + VDR + D +D ++T+ + + V + DL+S D V
Sbjct: 63 LAMIPLKTP--VDR--FELDALELD-------DYTVTLSLKAEGPGIVYSGDLESDDPDV 111
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
PV +I IVKL KGQ+L AYA+ G GK+HAKW P
Sbjct: 112 KPVNP--------------NIPIVKLAKGQKLVFNAYARLGRGKDHAKWQP 148
>gi|402467489|gb|EJW02781.1| hypothetical protein EDEG_02821 [Edhazardia aedis USNM 41457]
Length = 244
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 97/167 (58%), Gaps = 15/167 (8%)
Query: 11 ITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGL 70
+ + TD + ++E T ++ ANSLRRV I+E P++A D + ++ N+TVL D++IA RIGL
Sbjct: 5 VIEQTDNVLSLRLEKTTIAFANSLRRVLISEIPSIAFDLILIKENTTVLPDDYIAHRIGL 64
Query: 71 IPL-TSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVP 129
IP+ +++ ++ +C C +C CS+ D + T+ L T + ++P
Sbjct: 65 IPIFHTNDPKHNLISHTECHCQGYCESCSI-------TCDLVQANTTSECLLVTSSSLLP 117
Query: 130 VTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
+N + M ++I IVKL++ Q+L L A A+KG K+++KW
Sbjct: 118 ---KNFERKMF----NENIPIVKLQRRQKLCLTAVARKGIAKDNSKW 157
>gi|300681098|sp|P0CG28.1|RPOD_METAC RecName: Full=DNA-directed RNA polymerase subunit D
Length = 266
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 92/171 (53%), Gaps = 22/171 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I +L+D + KF + + + AN +RR +A+ PT+AI++V L N++VL DE +A R+
Sbjct: 5 VDILELSDRSAKFVLSNVSTAFANGIRRAMVADVPTLAIEYVNLYDNTSVLYDEQLALRL 64
Query: 69 GLIPLTSDEVVDRILYSRDCTCV--DFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
LIPL +D ++ L +C + C C V TL + V + DL S+D +
Sbjct: 65 SLIPLATD--IETYLPQAECDVCGGEGCPACEVSLTLSA----EGPGTVYSRDLISSDPK 118
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
+ P AD N + IV+L+KGQ+L L A A G+G++ KW
Sbjct: 119 IQP-------ADPN-------VPIVELKKGQKLVLEAIAHMGYGRDSVKWQ 155
>gi|328766566|gb|EGF76620.1| hypothetical protein BATDEDRAFT_21078 [Batrachochytrium
dendrobatidis JAM81]
Length = 342
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 99/181 (54%), Gaps = 21/181 (11%)
Query: 14 LTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPL 73
+ ++++F + + S++N+ RR+ I E TMAI+ V + N+ V+ DE +A R+GLIP+
Sbjct: 47 IGKDSMEFDLIGLDASISNAFRRILIGEVATMAIENVYIMNNTGVMHDEVLAQRLGLIPI 106
Query: 74 TSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV-VPVTS 132
SD R+ R+ + ++ F L++KC + H + +++ ++ + V S
Sbjct: 107 NSDP---RLFDFREGSDDPPTDLNTLVFRLNIKCT--RNPHASASEINPSNKYIDSDVLS 161
Query: 133 RN-------------RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
++ +D+ + Y DDILI KLR GQE+ + +KG GKEHAKW+P
Sbjct: 162 KHLIWEPQGDQVEKFKDSPIRPY--YDDILITKLRPGQEIEAELHCQKGIGKEHAKWSPV 219
Query: 180 A 180
A
Sbjct: 220 A 220
>gi|126179746|ref|YP_001047711.1| DNA-directed RNA polymerase subunit D [Methanoculleus marisnigri
JR1]
gi|125862540|gb|ABN57729.1| DNA-directed RNA polymerase, subunit D [Methanoculleus marisnigri
JR1]
Length = 276
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 88/166 (53%), Gaps = 22/166 (13%)
Query: 16 DENV-KFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT 74
DE V KF + +S AN LRR I+E PT+AI+ V++ N++VL DE +A R+GLIPL
Sbjct: 9 DERVAKFTLSGVSMSFANMLRRAMISEVPTLAIEDVRIYDNTSVLFDEMLAHRLGLIPLR 68
Query: 75 SDEVVDRILYSRDCTCVDF-CSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSR 133
+D + R +CTC D C C+ +TL V + + V ++DL D P +
Sbjct: 69 TD--LKRYKPRSECTCEDAGCPVCTATYTLSV----EGPKTVYSSDLIPQDPDAAPADEK 122
Query: 134 NRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
I I++L + Q+L L A A G GKEHAKW T
Sbjct: 123 --------------IPIIELARDQKLVLEAQAIVGTGKEHAKWQAT 154
>gi|429962561|gb|ELA42105.1| hypothetical protein VICG_00746 [Vittaforma corneae ATCC 50505]
Length = 233
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 20/168 (11%)
Query: 11 ITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGL 70
+ +LT N+KF + + +S ANSLRR+ + E P++AID V+++ NSTVL DE +A+R+GL
Sbjct: 5 VKELTKLNIKFTISSS-VSFANSLRRILLGEVPSIAIDVVEIKENSTVLPDEMVANRLGL 63
Query: 71 IPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPV 130
+P+ + ++ ++C C FC +CS++F L + D V DL+ TD V
Sbjct: 64 VPI---KYAGSLIPKQECKCDGFCDQCSIKFILKKRNDTDSVISVNGQDLQ-TDVPGVHC 119
Query: 131 TSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
++ LI++L GQ+L + A G + H K+ P
Sbjct: 120 SAA---------------LILRLAPGQKLDMICIATIGTPQTHVKYCP 152
>gi|124804792|ref|XP_001348113.1| DNA-directed RNA polymerase I, putative [Plasmodium falciparum 3D7]
gi|23496369|gb|AAN36026.1|AE014842_48 DNA-directed RNA polymerase I, putative [Plasmodium falciparum 3D7]
Length = 333
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 22/169 (13%)
Query: 22 QVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDR 81
++++ ++S+AN+LRR+ ++E PT+AI+ V + N+ +++DE + R+GLIP D D
Sbjct: 63 EIKNMDVSIANALRRIMLSEVPTIAIEKVNMYQNTGIIADEILCHRLGLIPFKFD--ADL 120
Query: 82 ILYSRD--------CTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSR 133
I Y D C C F L VK +T + + S D + P+ +
Sbjct: 121 INYKEDNEKYNHLNCFC----------FKLHVKFSSKRTGNDNYQSIYSKDLKWCPINEQ 170
Query: 134 NR-DADMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
R + N D +ILI K+ GQE+ L + +KG GK HAKW+P
Sbjct: 171 QRIKFEKNPPKVVDENILITKISSGQEIELICFLQKGIGKTHAKWSPVC 219
>gi|356527169|ref|XP_003532185.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Glycine max]
Length = 393
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 100/195 (51%), Gaps = 26/195 (13%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + LTD +++F + + ++AN+ RR+ IAE PTMAI+ V + N++V+ DE ++ R+
Sbjct: 88 VEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSVVQDEVLSHRL 147
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTAD-LK------ 121
GLIP+ +D R+ + D + ++ F L V+C Q R +D LK
Sbjct: 148 GLIPIRADP---RLFEYPENAGDDKNEKNTIVFKLHVRCQVGQPRITVKSDKLKWLPNGS 204
Query: 122 -------STDARVVPVTSRN--------RDADMNEYGET-DDILIVKLRKGQELRLRAYA 165
+A P T + + N G T DI++ KL GQE+ L A+A
Sbjct: 205 ELPCEDVKPNAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIILAKLGPGQEIELEAHA 264
Query: 166 KKGFGKEHAKWNPTA 180
KG GK HAKW+P A
Sbjct: 265 VKGTGKTHAKWSPVA 279
>gi|168042851|ref|XP_001773900.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674744|gb|EDQ61248.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 360
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 24/191 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I + +E+++F + + ++AN+ RR+ IAE PTMAI+ V + N++V+ DE +A R+
Sbjct: 63 VEIISMNEEDIEFDIVGIDAAIANAFRRILIAEVPTMAIEKVYIANNTSVIQDEVLAHRL 122
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+P+ +D L+ + + ++ F +DV C R V + + S + +
Sbjct: 123 GLLPIKADPR----LFDYKSEEENANEKNTIVFKIDVVCTRKGER-VLNSSVTSDQMKWL 177
Query: 129 PVTSR---NRDADMNEYGETD----------------DILIVKLRKGQELRLRAYAKKGF 169
P S N +G + DI++ KLR GQ + L +A KG
Sbjct: 178 PEGSEMPFNTMTKFTSFGSSQKNLPGLPAEGISCQYPDIIVAKLRPGQAIELEGHAIKGS 237
Query: 170 GKEHAKWNPTA 180
G HAKW+P A
Sbjct: 238 GNIHAKWSPVA 248
>gi|432329920|ref|YP_007248063.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanoregula formicicum SMSP]
gi|432136629|gb|AGB01556.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanoregula formicicum SMSP]
Length = 276
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 86/174 (49%), Gaps = 25/174 (14%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ L D +F + + AN+ RR I E PT+AI+ V++ N++ L DE +A R+
Sbjct: 3 IEFASLDDSLARFTLSGASPAFANAFRRAMIGEVPTLAIEDVRIYDNTSALFDEMLAHRL 62
Query: 69 GLIPLTSDEVVDRILYSRD--CTCVDF-CSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
GLIPL +D V YS C+C C C+ +TL V + R VT++DL D
Sbjct: 63 GLIPLKTDLSV----YSTQDTCSCGGAGCPGCTATYTLSV----EGPRMVTSSDLIPQDP 114
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
PV D+I IVKL KGQ+L + A A G+ HAKW T
Sbjct: 115 GAAPV--------------YDNIPIVKLTKGQKLVIEARAILNTGRAHAKWQST 154
>gi|68482204|ref|XP_714986.1| hypothetical protein CaO19.11048 [Candida albicans SC5314]
gi|68482331|ref|XP_714923.1| hypothetical protein CaO19.3564 [Candida albicans SC5314]
gi|46436522|gb|EAK95883.1| hypothetical protein CaO19.3564 [Candida albicans SC5314]
gi|46436587|gb|EAK95947.1| hypothetical protein CaO19.11048 [Candida albicans SC5314]
Length = 369
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 24/195 (12%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ N+ + IT+L++ F + + S+AN+ RR+ IAE P++A + V + N++V+ DE
Sbjct: 71 FKNKFEIKITNLSERTGTFDLIHIDTSIANAFRRIMIAEVPSVAAETVYMFMNTSVIQDE 130
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFTLDVKCVDDQTRHVTTADL 120
+A RIGLIP D D++ + + ++ F + ++ +LDV C + A
Sbjct: 131 VLAQRIGLIPWKIDP--DKLTWVDETVDINDRFTEDNTIVLSLDVACSKN-----PHAPK 183
Query: 121 KSTDARVVPVTSR--NRDADMNEYGETD-------------DILIVKLRKGQELRLRAYA 165
STD R + S +D +G + DIL+ KLR GQE+ LRA+
Sbjct: 184 NSTDPRELYKNSHVYAKDFKFEPHGNQEEKFKDTPVVPCDPDILLAKLRPGQEISLRAHC 243
Query: 166 KKGFGKEHAKWNPTA 180
G G +HAK++P A
Sbjct: 244 VLGIGSDHAKFSPVA 258
>gi|300707120|ref|XP_002995782.1| hypothetical protein NCER_101243 [Nosema ceranae BRL01]
gi|239604995|gb|EEQ82111.1| hypothetical protein NCER_101243 [Nosema ceranae BRL01]
Length = 233
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 96/172 (55%), Gaps = 19/172 (11%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I + TD +KF + DT +S AN+LRR+ I+E PT+ ID V++E N+T L DE I+ R+
Sbjct: 3 ILIEESTDNIIKFTLRDTYVSYANALRRILISEVPTVTIDLVEIEINNTSLPDEMISHRL 62
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PL + + +++ DC C D C +CSV TL+V D VT DLKS D V+
Sbjct: 63 GLVPLYTKK---DLVFRDDCACDDICDKCSVSLTLNVSNNTDMPMVVTCKDLKSQDDVVI 119
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ +I KL Q L++ A KG GK H+KW+P +
Sbjct: 120 RSSP----------------VICKLGTRQNLKVICKAFKGVGKIHSKWSPVS 155
>gi|238882305|gb|EEQ45943.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide [Candida
albicans WO-1]
Length = 336
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 24/195 (12%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ N+ + IT+L++ F + + S+AN+ RR+ IAE P++A + V + N++V+ DE
Sbjct: 38 FKNKFEIKITNLSERTGTFDLIHIDTSIANAFRRIMIAEVPSVAAETVYMFMNTSVIQDE 97
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFTLDVKCVDDQTRHVTTADL 120
+A RIGLIP D D++ + + ++ F + ++ +LDV C + A
Sbjct: 98 VLAQRIGLIPWKIDP--DKLTWVDETVDINDRFTEDNTIVLSLDVACSKN-----PHAPK 150
Query: 121 KSTDARVVPVTSR--NRDADMNEYGETD-------------DILIVKLRKGQELRLRAYA 165
STD R + S +D +G + DIL+ KLR GQE+ LRA+
Sbjct: 151 NSTDPRELYKNSHVYAKDFKFEPHGNQEEKFKDTPVVPCDPDILLAKLRPGQEISLRAHC 210
Query: 166 KKGFGKEHAKWNPTA 180
G G +HAK++P A
Sbjct: 211 VLGIGSDHAKFSPVA 225
>gi|440293650|gb|ELP86743.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Entamoeba invadens IP1]
Length = 289
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 101/177 (57%), Gaps = 10/177 (5%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
+P + T E V F + + ++SVANSLRR+ ++E PTMAI+ V +E N++ + DE +A
Sbjct: 4 EPHIEFISTTPEKVVFDLTNVDVSVANSLRRIMLSEVPTMAIEMVVMEVNTSCIPDEMLA 63
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+GLIP+ +D + ++ + ++ E ++ F +DV + + + ++ S+D
Sbjct: 64 HRLGLIPIYADP--RKFQFAPNRAFLEPTEENTLVFHMDV-INNTKDKTAVHKNVYSSDI 120
Query: 126 RVVPV----TSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
P T+ +D G DILI +L +GQ+++ + Y KG G++HAK++P
Sbjct: 121 IWEPQGDQETTFQKDPIRVVLG---DILIAELAQGQQIKCKLYCCKGLGQDHAKFSP 174
>gi|225716742|gb|ACO14217.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Esox lucius]
Length = 263
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 95/172 (55%), Gaps = 13/172 (7%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
++F + + S+AN+ RR+ +AE PTMA++ V + N++++ DE +A R+GLIP+ +D
Sbjct: 62 MEFDMVGIDASIANAFRRILLAEVPTMAVEKVFIYNNTSIIQDEVLAQRLGLIPIKADP- 120
Query: 79 VDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTAD---------LKSTDARVVP 129
R+ R+ + +++ L +KC + +AD + S D VP
Sbjct: 121 --RLFEYRNAGDEEGTEIDTIQLQLKIKCTRNHQATKDSADPQELYLNHMVYSKDMTWVP 178
Query: 130 VTSR-NRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ ++ + AD N DIL+ KLR GQEL + + KG G++HAK++P A
Sbjct: 179 IGNQADVVADANIGPVHGDILLAKLRPGQELDIVMHCVKGIGQDHAKFSPVA 230
>gi|149571084|ref|XP_001507416.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Ornithorhynchus anatinus]
Length = 346
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 100/184 (54%), Gaps = 19/184 (10%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + +++++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVQMEEDSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIMQDEVLAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV---------DDQTRHVTTAD 119
GLIP+T+D R+ R+ + +++F L VKC D +
Sbjct: 111 GLIPITADP---RLFEYRNQGDEEGTEIDTLQFQLKVKCTWNPSAAKDSSDPNQLYLNHK 167
Query: 120 LKSTDARVVPVTSRNRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
+ + VP+ ++ AD+ G DDILI +LR GQEL L + KG GK+HAK
Sbjct: 168 VYTKHMTWVPLGNQ---ADLFPEGAIRPVHDDILITQLRPGQELDLLMHYVKGVGKDHAK 224
Query: 176 WNPT 179
++P
Sbjct: 225 FSPV 228
>gi|307103493|gb|EFN51752.1| hypothetical protein CHLNCDRAFT_27642 [Chlorella variabilis]
Length = 381
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 17/185 (9%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V IT +++F+++ ++ANSLRR+ I+E PTMAI+ V + N++V+ DE ++ R+
Sbjct: 81 VDITRYEGYDMEFEMKGVSCALANSLRRIMISEAPTMAIEHVYIVNNTSVIQDEVLSHRL 140
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIPL D + + D + ++ L V+C + + S D + +
Sbjct: 141 GLIPLKVDPRLFQYKAKEDAP----SEQNTIVLKLKVECRRLPNSGMENDKVYSRDLQWL 196
Query: 129 PVTSRNRDADMNEYGET-------------DDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
P S D + + DDILI KLR GQ + L + KG G +HAK
Sbjct: 197 PEGSEMPDETSCRFASSQAALVPEDVRPVHDDILIAKLRPGQAIELECHCIKGVGDDHAK 256
Query: 176 WNPTA 180
W+P A
Sbjct: 257 WSPVA 261
>gi|156839627|ref|XP_001643502.1| hypothetical protein Kpol_473p3 [Vanderwaltozyma polyspora DSM
70294]
gi|156114116|gb|EDO15644.1| hypothetical protein Kpol_473p3 [Vanderwaltozyma polyspora DSM
70294]
Length = 320
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 97/182 (53%), Gaps = 14/182 (7%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
++I+ + + + + + S+AN+LRR+ I+E P++A +++ + N++V+ DE IA RI
Sbjct: 28 INISKVGERETNLDLINVDTSIANALRRIMISEVPSVAAEYIYILNNTSVIQDEVIAQRI 87
Query: 69 GLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFTLDVKCV---------DDQTRHVTT 117
GLIPL D DR+ + + D F E ++ +L+VKC D +
Sbjct: 88 GLIPLKVDP--DRLTWLNNDLPEDEKFTDENTIVLSLNVKCTRNLDAPKDCTDPSILYHN 145
Query: 118 ADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
A + + D + P + AD DILI KLR GQE+ LRA+ G G +HAK+
Sbjct: 146 AHIYARDLKFEPQGKQEETFADSPVVSADPDILIAKLRPGQEISLRAHCILGIGADHAKF 205
Query: 177 NP 178
+P
Sbjct: 206 SP 207
>gi|254580391|ref|XP_002496181.1| ZYRO0C12364p [Zygosaccharomyces rouxii]
gi|238939072|emb|CAR27248.1| ZYRO0C12364p [Zygosaccharomyces rouxii]
Length = 335
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 99/197 (50%), Gaps = 28/197 (14%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ N V I LT+ F + + S+AN+ RR+ I+E P++A ++V N++V+ DE
Sbjct: 36 FKNTFDVRIGSLTEREANFDLVHVDTSIANAFRRIMISEVPSVATEYVYFLNNTSVIQDE 95
Query: 63 FIASRIGLIPLTSDE----VVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTA 118
+A RIGL+PL D VD L + F E ++ TL+VKC TR+ A
Sbjct: 96 VLAHRIGLVPLKVDPDMLTWVDHSLPEEE----KFTDENTIVMTLNVKC----TRN-PDA 146
Query: 119 DLKSTDARVVPVTSR--NRDADMNEYGE------------TD-DILIVKLRKGQELRLRA 163
TD +++ S RD G TD DIL+ KLR GQE+ LRA
Sbjct: 147 PKDCTDPKILYRNSHIYARDLKFEPQGSQVETFAKCPVIPTDPDILLAKLRPGQEISLRA 206
Query: 164 YAKKGFGKEHAKWNPTA 180
+ G G +HAK++P A
Sbjct: 207 HCILGVGSDHAKFSPVA 223
>gi|189203213|ref|XP_001937942.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985041|gb|EDU50529.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 376
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 97/188 (51%), Gaps = 27/188 (14%)
Query: 18 NVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDE 77
+ +F + + SVAN+ RR+ ++E PT+AI+ V + N++++ DE +A R+GLIPL D
Sbjct: 61 DAQFSLTGIDTSVANAFRRILLSEIPTLAIEDVYIYQNTSIIQDEVLAHRLGLIPLCGDR 120
Query: 78 VVDRIL--YSR----DCTCVDFCSECSVEFTLDVKCV-------------DDQTRHVTTA 118
R + Y++ D SE +V TL KC D R
Sbjct: 121 ATLRRMKWYAKPTDEDEGSGGPTSENTVALTLKTKCTWQPGGVARAVAGETDPDRLYVGH 180
Query: 119 DLKSTDARVVPVTSRNRDADMNE------YGETDDILIVKLRKGQELRLRAYAKKGFGKE 172
++ + D R P + N+ +++E DILI K+R GQEL +R +A KG G++
Sbjct: 181 NVYAKDMRFEP--NGNQAENLSEAEGKHIRSTNPDILICKMRPGQELEIRMHAIKGIGQD 238
Query: 173 HAKWNPTA 180
HAK++P A
Sbjct: 239 HAKFSPVA 246
>gi|374628605|ref|ZP_09700990.1| DNA-directed RNA polymerase, subunit D [Methanoplanus limicola DSM
2279]
gi|373906718|gb|EHQ34822.1| DNA-directed RNA polymerase, subunit D [Methanoplanus limicola DSM
2279]
Length = 274
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 87/166 (52%), Gaps = 22/166 (13%)
Query: 16 DENV-KFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT 74
DEN KF ++ T + ANS RR I + PT+AI+ V L N++ L DE + R+GLIP+T
Sbjct: 9 DENAAKFILKGTTFAFANSFRRAMITDVPTLAIEDVYLYDNNSALFDEILTHRLGLIPIT 68
Query: 75 SDEVVDRILYSRDCTC-VDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSR 133
+D + + +C+C + CS+C FTL V + V + DL + VPV
Sbjct: 69 TD--LSEYVRRDECSCGGEGCSQCQAVFTLSV----EGPGIVMSGDLVPQNPGAVPVNP- 121
Query: 134 NRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
DI IVKL + Q++ L A A+ G EHAKW PT
Sbjct: 122 -------------DIPIVKLDEDQKVVLEARAELNTGMEHAKWQPT 154
>gi|241951478|ref|XP_002418461.1| DNA-directed RNA polymerases I and III subunit, putative [Candida
dubliniensis CD36]
gi|223641800|emb|CAX43762.1| DNA-directed RNA polymerases I and III subunit, putative [Candida
dubliniensis CD36]
Length = 336
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 100/195 (51%), Gaps = 24/195 (12%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ N + IT+L++ F + + S+AN+ RR+ IAE P++A + V + N++V+ DE
Sbjct: 38 FKNNFEIKITNLSERTGTFDLIHIDTSIANAFRRIMIAEVPSVAAETVYMFMNTSVIQDE 97
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFTLDVKCVDDQTRHVTTADL 120
+A RIGLIP D D++ + + ++ F + ++ +LDV C + A
Sbjct: 98 VLAQRIGLIPWKIDP--DKLTWVDETVDINDRFTEDNTIVLSLDVACSKN-----PHAPK 150
Query: 121 KSTDARVVPVTSR--NRDADMNEYGETD-------------DILIVKLRKGQELRLRAYA 165
STD R + S +D +G + DIL+ KLR GQE+ LRA+
Sbjct: 151 NSTDPRELYKNSHVYAKDFKFEPHGNQEEKFKDTPVVPCDPDILLAKLRPGQEISLRAHC 210
Query: 166 KKGFGKEHAKWNPTA 180
G G +HAK++P A
Sbjct: 211 VLGIGSDHAKFSPVA 225
>gi|346464743|gb|AEO32216.1| hypothetical protein [Amblyomma maculatum]
Length = 340
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 24/193 (12%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+A V I L D ++F + ++AN++RR+ +AE PTMA D V L N++++ DE
Sbjct: 42 FAKNFKVGIVSLDDTTMEFDMIGLNPAIANAIRRILLAEVPTMAPDKVYLYNNTSIVQDE 101
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQ--TRHVTTADL 120
+A RIGL+P D R+ R+ + + E +VEF L VKC + + T D
Sbjct: 102 VLAHRIGLVPFNIDP---RMFEYRE-SGNEGSPEDTVEFELKVKCTKNPHAPKDATVPDE 157
Query: 121 KSTDARV-------VPVTSRNRDADMNEYGET------DDILIVKLRKGQELRLRAYAKK 167
D V +P+ S+ + +G DDI++ KLR GQE+ L+ + K
Sbjct: 158 LYKDHVVYTKHLKWIPLGSQ-----VEIFGNKPPKPVHDDIILAKLRPGQEIDLKLHCLK 212
Query: 168 GFGKEHAKWNPTA 180
G G+ HAK++P A
Sbjct: 213 GTGQVHAKFSPVA 225
>gi|389583971|dbj|GAB66705.1| DNA-directed RNA polymerase I, partial [Plasmodium cynomolgi strain
B]
Length = 333
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 14/163 (8%)
Query: 22 QVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDR 81
+V++ +S+AN+LRR+ +AE PT+AI+ V + N+ +++DE + R+GLIP D D
Sbjct: 63 EVKNLNVSIANALRRIMLAEVPTIAIEKVNIFQNTGIIADEILCHRLGLIPFKFD--ADL 120
Query: 82 ILYSRDCTCVD----FCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDA 137
I + + + FC + V+FT V + T+ + S D + P+ + +
Sbjct: 121 INFKEEYEKYNHLNCFCFKLHVKFTKKVGSSE------TSQSIYSRDLKWCPINEQQKAR 174
Query: 138 DMNEYGET--DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
D+ILI KL GQE+ L + +KG GK HAKW+P
Sbjct: 175 FQKNPPRVVDDNILITKLSNGQEIELICFLEKGIGKTHAKWSP 217
>gi|196010261|ref|XP_002114995.1| hypothetical protein TRIADDRAFT_59063 [Trichoplax adhaerens]
gi|190582378|gb|EDV22451.1| hypothetical protein TRIADDRAFT_59063 [Trichoplax adhaerens]
Length = 349
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 34/193 (17%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I + +E ++F + + S+AN+ RR+ ++E P MAI+ V + N++++ DE +A R+
Sbjct: 49 IEIIKVDNEEMEFDMIGIDASIANAYRRIMLSEVPAMAIEKVVIHNNTSIIQDEVLAHRL 108
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRH-------------- 114
GLIP+ +D + D ++ S+ FTL +KC+ +++ H
Sbjct: 109 GLIPIAADPKLFDNFNPGDTP----TNKNSITFTLQIKCIRNRSAHSDATDPEELYINSK 164
Query: 115 VTTADLKSTDARVVPVTSRNRDADMNEYGETD------DILIVKLRKGQELRLRAYAKKG 168
VTT DLK N D D N D DILI KLR GQE+ L KG
Sbjct: 165 VTTKDLK---------LKYNEDQD-NAIPNKDIRPVHEDILIAKLRPGQEIDLEMICVKG 214
Query: 169 FGKEHAKWNPTAG 181
G +HAK++P
Sbjct: 215 TGADHAKFSPVGN 227
>gi|70943148|ref|XP_741656.1| DNA-directed RNA polymerase I [Plasmodium chabaudi chabaudi]
gi|56520171|emb|CAH77688.1| DNA-directed RNA polymerase I, putative [Plasmodium chabaudi
chabaudi]
Length = 297
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 13/166 (7%)
Query: 22 QVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIP--LTSDEVV 79
++++ +S+AN+LRR+ I+E PT+AI+ V + N+ V++DE + R+GLIP +D +
Sbjct: 63 EIKNLNVSIANALRRIMISEVPTIAIEKVNIFQNTGVIADEILCHRLGLIPFKFNADLIN 122
Query: 80 DRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK---STDARVVPVTSRNRD 136
+ Y + FC F L VKC + + + S D + P+ +
Sbjct: 123 FKDTYEKYNNLNCFC------FKLHVKCNSINNNKIGNENYQCIYSKDLKWCPLNEEQKI 176
Query: 137 ADMNEYGET--DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
N + D+ILI KL GQE+ L + +KG GK HAKW+P
Sbjct: 177 KFENNPPKVVDDNILITKLGSGQEIELICFLEKGIGKTHAKWSPVC 222
>gi|170033286|ref|XP_001844509.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Culex
quinquefasciatus]
gi|167873916|gb|EDS37299.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Culex
quinquefasciatus]
Length = 335
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 103/190 (54%), Gaps = 17/190 (8%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ Q + + + ++F + ++AN+ RR+ ++E P+MAI+ V + N++++ DE
Sbjct: 40 FKRQLQIVVVRYEENELEFDMIGVSPAIANAFRRLMLSEVPSMAIEKVHIYNNTSIIQDE 99
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV--DDQTRHVTTAD- 119
+A R+GLIPL +D R+ + ++ ++EF L VKC + + VT D
Sbjct: 100 VLAHRLGLIPLKADP---RLFEYKTNEGDAANAQDTLEFELKVKCTKKNKDSTEVTNNDS 156
Query: 120 ------LKSTDARVVPVTSRN---RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFG 170
+ S + VPV ++ ++AD+ DDILI ++R G E ++ +A KG G
Sbjct: 157 MYKNHSIYSGQIKWVPVGNQASIYKEADVGPI--DDDILISRMRPGHEFDIKLFAVKGVG 214
Query: 171 KEHAKWNPTA 180
K+HAK++P A
Sbjct: 215 KDHAKFSPVA 224
>gi|255563568|ref|XP_002522786.1| DNA-directed RNA polymerase I/III subunits, putative [Ricinus
communis]
gi|223538024|gb|EEF39637.1| DNA-directed RNA polymerase I/III subunits, putative [Ricinus
communis]
Length = 374
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 97/189 (51%), Gaps = 21/189 (11%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + LT ++++F + + ++AN+ RR+ I+E PTMAI+ V + N++++ DE +A R+
Sbjct: 77 VEVIQLTKDDMEFDMIGIDAAIANAFRRILISELPTMAIEKVLIANNTSLIQDEVLAHRL 136
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRH-VTTADLK------ 121
GLIP+ +D + L + D + ++ F L C + R V + +LK
Sbjct: 137 GLIPINADPRLFEYLSANDTP----NEKNTIVFKLHASCKRGEPRRTVYSEELKWLPGGS 192
Query: 122 -------STDARVVPVTSRNRDADMNEYGET---DDILIVKLRKGQELRLRAYAKKGFGK 171
D++ TS D + D I++ KL GQE+ L A+A KG GK
Sbjct: 193 QLLKESEKADSKPSTYTSFTDKQDFIPKPVSPSEDKIIVAKLGPGQEIELEAHAVKGLGK 252
Query: 172 EHAKWNPTA 180
HAKW+P A
Sbjct: 253 THAKWSPVA 261
>gi|225461965|ref|XP_002270559.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Vitis vinifera]
gi|296089944|emb|CBI39763.3| unnamed protein product [Vitis vinifera]
Length = 372
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 29/203 (14%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ N V + L++++++F + + S+AN+ RR+ IAE PTMAI+ V + N++++ DE
Sbjct: 61 FCNNFRVEVIRLSEDDMEFDMIGIDPSIANAFRRILIAELPTMAIEKVLIANNTSIVQDE 120
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTR-HVTTADLK 121
+A R+GLIP+ +D + L D + ++ F L V+C R V + +LK
Sbjct: 121 VLAHRLGLIPINADPRLFDDLSENDTP----NEKNTIVFNLHVRCERGGPRLTVKSNELK 176
Query: 122 -STDARVVPVTSRNRDA-----------------DMNEYGETD------DILIVKLRKGQ 157
P+ + N + + E+ + DI+I KL GQ
Sbjct: 177 WLPHGSEFPLATENTTSSSTSKPKTYTSFSCSQDSLPEFSDKSIGPKHPDIIIAKLGPGQ 236
Query: 158 ELRLRAYAKKGFGKEHAKWNPTA 180
E+ L A+A KG GK HAKW+P A
Sbjct: 237 EIELEAHAVKGMGKTHAKWSPVA 259
>gi|157116377|ref|XP_001658447.1| DNA-directed RNA polymerase [Aedes aegypti]
gi|108876498|gb|EAT40723.1| AAEL007568-PA [Aedes aegypti]
Length = 335
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 101/190 (53%), Gaps = 17/190 (8%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ Q + I + ++F + ++AN+ RR+ ++E P+MAI+ V + N++++ DE
Sbjct: 40 FKQQLQIVIVRYEENELEFDMVGVNPAIANAFRRLMLSEVPSMAIEKVHIYNNTSIIQDE 99
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV--DDQTRHVTTAD- 119
+A R+GLIPL +D R+ + + ++EF L VKC + + +T D
Sbjct: 100 VLAHRLGLIPLRADP---RLFEYKTNENDPPNALDTLEFELKVKCTKKNKDSTEITNNDS 156
Query: 120 ------LKSTDARVVPV---TSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFG 170
+ S + +PV S ++AD+ DDILI K+R G E ++ +A KG G
Sbjct: 157 MYKNHSIYSGQIKWIPVGNQASIYKEADVGPI--DDDILISKMRPGHEFDIKLFAMKGIG 214
Query: 171 KEHAKWNPTA 180
K+HAK++P A
Sbjct: 215 KDHAKFSPVA 224
>gi|302414524|ref|XP_003005094.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Verticillium
albo-atrum VaMs.102]
gi|261356163|gb|EEY18591.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Verticillium
albo-atrum VaMs.102]
Length = 375
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 97/189 (51%), Gaps = 17/189 (8%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V L+ F + + S+AN+LRR+ I+E PT+AI+ V + N++V+ DE +A R+
Sbjct: 55 VRYHQLSPSESSFSLIGVDASIANALRRILISEIPTLAIETVYIYNNTSVIQDEVLAHRL 114
Query: 69 GLIPLTSDEVVDR-ILYSR----DCTCVDFCSECSVEFTLDVKCVD---------DQTRH 114
GL+P T+++ R L R D T D +V+ L ++C D T+
Sbjct: 115 GLVPFTANKAGLRDFLRWRKKNPDGTPGDIFDYNTVQLRLRIECTRNPDAAPGEIDSTKA 174
Query: 115 VTTADLKSTDARVVPVTSRNR--DADMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGK 171
A + ++D VP + D +N T+ DIL+ KLR GQ L + + KG G
Sbjct: 175 FRNAHVHASDIEYVPSGRQLEYFDGPLNTVRPTNPDILLAKLRPGQVLEMDMHMHKGIGS 234
Query: 172 EHAKWNPTA 180
+HAK++P A
Sbjct: 235 DHAKFSPVA 243
>gi|242064360|ref|XP_002453469.1| hypothetical protein SORBIDRAFT_04g006420 [Sorghum bicolor]
gi|241933300|gb|EES06445.1| hypothetical protein SORBIDRAFT_04g006420 [Sorghum bicolor]
Length = 370
Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 98/191 (51%), Gaps = 23/191 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I LT+++++F + + S+AN+ RR+ IAE PTMAI+ + + N++V++DE ++ R+
Sbjct: 72 IEINRLTEDDMEFDMIGIDASIANAFRRILIAEVPTMAIEKIFMVDNTSVIADEVLSHRL 131
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTR-HVTTADLK-----S 122
GLIPL +D + + D +V + L V C R V +++L+ S
Sbjct: 132 GLIPLRADPRLFDYISENDVP----NERNTVVYKLHVSCPKGSQRITVKSSELEWLPEGS 187
Query: 123 TDARVVPVTSRNRDADMNEYGETD-------------DILIVKLRKGQELRLRAYAKKGF 169
+ P S ++ + ++ DI I +L GQ + L A+A KG
Sbjct: 188 QLSMAAPAQSGDKQKTFTSFSQSQKEILEEPLGVKFKDITIARLGPGQAIELEAHAVKGV 247
Query: 170 GKEHAKWNPTA 180
GK HAKW+P A
Sbjct: 248 GKVHAKWSPVA 258
>gi|321465930|gb|EFX76928.1| hypothetical protein DAPPUDRAFT_213644 [Daphnia pulex]
Length = 353
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 13/188 (6%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ + ++I + + ++F + + ++ N+ RR+ +++ PTMA D V + N++++ DE
Sbjct: 53 FKKRLKINIVRMENMEIEFDLIGVDPAIPNAFRRILLSDIPTMAFDKVFMFNNTSIIQDE 112
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV--DDQTRHVTTADL 120
+A R+GLIPL +D R+ R E ++EF L VKC +T+ T +
Sbjct: 113 VLAHRLGLIPLKADP---RLFEFRAEDDDAGTPEDTLEFELKVKCSWNPQRTKDHTNPEH 169
Query: 121 KSTDARVV-------PVTSRNRDADMNEYGETDD-ILIVKLRKGQELRLRAYAKKGFGKE 172
D RV+ P+ + + G DD ILI K+R G EL ++ +A KG G+E
Sbjct: 170 LYRDFRVLTSHLKWMPLGGQKDIFTPDAVGPVDDKILIAKMRPGHELDIKLHAMKGTGRE 229
Query: 173 HAKWNPTA 180
HAK++P A
Sbjct: 230 HAKFSPVA 237
>gi|410075079|ref|XP_003955122.1| hypothetical protein KAFR_0A05520 [Kazachstania africana CBS 2517]
gi|372461704|emb|CCF55987.1| hypothetical protein KAFR_0A05520 [Kazachstania africana CBS 2517]
Length = 334
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 96/185 (51%), Gaps = 16/185 (8%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I+ + + F + + SVAN+ RR+ I+E P +A+++V N++V+ DE +A RI
Sbjct: 42 VKISSMNEREANFDLVHIDTSVANAFRRIMISEVPAVAVEYVYFLNNTSVIQDEVLAHRI 101
Query: 69 GLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEFTLDVKCV--DDQTRHVT------- 116
GL+PL D +L D + D F E ++ TL+VKC D R T
Sbjct: 102 GLVPLKVDP---DMLTWIDSSLPDDEKFTDENTIVLTLNVKCTRNPDAPRDCTDPNILYR 158
Query: 117 TADLKSTDARVVPVTSRNRDADMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHAK 175
+++ ++D + P + N D IL+ KLR GQE+ LRA+ G G +HAK
Sbjct: 159 NSNVYASDLKFEPQGKQVETFANNAVVPCDPKILLAKLRPGQEISLRAHCILGIGSDHAK 218
Query: 176 WNPTA 180
++P A
Sbjct: 219 FSPVA 223
>gi|146304892|ref|YP_001192208.1| DNA-directed RNA polymerase D [Metallosphaera sedula DSM 5348]
gi|145703142|gb|ABP96284.1| DNA-directed RNA polymerase, subunit D [Metallosphaera sedula DSM
5348]
Length = 262
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 86/173 (49%), Gaps = 18/173 (10%)
Query: 11 ITDLTDENVKFQV--EDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
I L EN + +D L NS+RR + P MA+D V + N++ L DE +A R+
Sbjct: 3 IQVLKKENYFLSILTKDYPLEFVNSIRRASMLYVPVMAVDEVYVIENNSPLYDEMLAHRL 62
Query: 69 GLIPLTSDEVVDRILYSRDCT-CVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
GLIP S + +D +C C + C C + +DVK D Q V + D+++ D V
Sbjct: 63 GLIPFDSKDALDYYRRPEECIECTENCDRCFTKAYIDVKAEDSQV-MVYSRDIRTEDPNV 121
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
P++ DI IV L K Q++ L + G+GKEHAK+NP +
Sbjct: 122 TPISK--------------DIPIVLLGKNQKVTLEMKMRLGYGKEHAKFNPVS 160
>gi|50285441|ref|XP_445149.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524452|emb|CAG58049.1| unnamed protein product [Candida glabrata]
Length = 334
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 100/183 (54%), Gaps = 12/183 (6%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ ++ + + F + + S+AN+ RR+ IAE P +A ++V ++ N++V+ DE +A RI
Sbjct: 42 IQVSSHEERELNFDMIGIDTSLANAFRRIMIAEVPAVAPEYVYIQNNTSVIQDEVLAHRI 101
Query: 69 GLIPLTSD-EVVDRILYSRDCTCVDFCSECSVEFTLDVKCV---------DDQTRHVTTA 118
GL+PL D E ++R L + D ++F + ++ TL+VKC D T A
Sbjct: 102 GLVPLKVDPEKLER-LDTSDPDNLEFHDKNTIVMTLNVKCTRNPDAPKDCTDPTILYNNA 160
Query: 119 DLKSTDARVVPVTSRNRD-ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
+ + D + P +S+ AD DIL+ KLR GQE+ L + G GK+HAK++
Sbjct: 161 HVYARDLKFEPHSSQVETFADCPVVPCDPDILLAKLRPGQEISLSTHCILGEGKDHAKFS 220
Query: 178 PTA 180
P A
Sbjct: 221 PVA 223
>gi|57641438|ref|YP_183916.1| DNA-directed RNA polymerase subunit D [Thermococcus kodakarensis
KOD1]
gi|73917880|sp|Q5JJF4.1|RPOD_PYRKO RecName: Full=DNA-directed RNA polymerase subunit D
gi|57159762|dbj|BAD85692.1| DNA-directed RNA polymerase, subunit D [Thermococcus kodakarensis
KOD1]
Length = 259
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 85/162 (52%), Gaps = 25/162 (15%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
+++KF V ++ AN+LRR ++E PT A+D V+ N + L DE IA R+ +IPLT+
Sbjct: 12 DSIKFIVSGVDVPFANALRRTILSEVPTFAVDEVEFLENDSALFDEIIAHRLAMIPLTTP 71
Query: 77 EVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRD 136
+R +S D +D ++T+ + + V + DLKS+D V P
Sbjct: 72 H--ER--FSLDALELD-------DYTVTLSLEAEGPGMVYSGDLKSSDGDVKPANP---- 116
Query: 137 ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+I IVKL +GQ L AYA+ G GK+HAKW P
Sbjct: 117 ----------NIPIVKLAEGQRLTFNAYARLGRGKDHAKWQP 148
>gi|401825113|ref|XP_003886652.1| DNA-directed RNA polymerase I [Encephalitozoon hellem ATCC 50504]
gi|395459797|gb|AFM97671.1| DNA-directed RNA polymerase I [Encephalitozoon hellem ATCC 50504]
Length = 305
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 96/179 (53%), Gaps = 21/179 (11%)
Query: 5 NQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFI 64
N ++IT+ T E ++F + + + S AN+LRR+ + PTMA+ V L+ N +V DEFI
Sbjct: 28 NDIEINITEYTKERLEFDLINVDCSFANALRRILCNDIPTMAVRDVLLKENESVFPDEFI 87
Query: 65 ASRIGLIPLTSD----EVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
A R+GLIPL +D E ++ L R+ S+ F LDVK ++++ V ++
Sbjct: 88 AHRLGLIPLEADPEMFEFAEKELNERN----------SLRFVLDVK---NESKDVL--NV 132
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
S D + +P S+ + + + +L+ KL +GQ + K GK HAKW+P
Sbjct: 133 YSDDIKWIPFGSQR--GTLKDVKFSSKVLMFKLARGQRISAELVCTKNIGKVHAKWSPV 189
>gi|440296135|gb|ELP88976.1| DNA-directed RNA polymerase subunit D, putative [Entamoeba invadens
IP1]
Length = 280
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 89/168 (52%), Gaps = 28/168 (16%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E + F++ +T+ S N LRR+ +AE PT+AI V++ N++ L DE+IA R+GLIPL S
Sbjct: 17 EKLSFRIYNTDTSFVNGLRRMIMAEVPTIAIQLVRVHLNTSYLCDEYIAHRLGLIPLDST 76
Query: 77 EVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTR---HVTTADLKSTDA-RVVPVTS 132
+V D E + +++ V++ R +VT+ DL+ + ++ PV
Sbjct: 77 KVYD--------------FEDGDQTIFNIRVVNENERESLNVTSNDLQFVEGKKLFPVG- 121
Query: 133 RNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Y + I+I +L Q L + +A KG GK HAKWNPT
Sbjct: 122 ---------YKSDNPIIITQLGPRQSLYVDCFATKGTGKFHAKWNPTC 160
>gi|357460223|ref|XP_003600393.1| DNA-directed RNA polymerase subunit D [Medicago truncatula]
gi|355489441|gb|AES70644.1| DNA-directed RNA polymerase subunit D [Medicago truncatula]
Length = 399
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 95/192 (49%), Gaps = 23/192 (11%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + +TDE ++F + + +VAN+ RR+ IAE PTMAI+ V + N++++ DE ++ R+
Sbjct: 88 VEVKRITDEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRL 147
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTAD----LKSTD 124
GLIP+ +D ++ D + + ++ F V+C Q R +D L +
Sbjct: 148 GLIPIDADP---KLFEYPDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDTLKWLPNGS 204
Query: 125 ARVVPVTSRNRDADMNEYGETD----------------DILIVKLRKGQELRLRAYAKKG 168
+ T D + + D+++ KL GQE+ L A+A KG
Sbjct: 205 ELIAEGTKSAADPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKG 264
Query: 169 FGKEHAKWNPTA 180
GK HAKW+P A
Sbjct: 265 IGKTHAKWSPVA 276
>gi|126310054|ref|XP_001362696.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Monodelphis domestica]
Length = 346
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 101/185 (54%), Gaps = 19/185 (10%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMIGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTAD--------- 119
GLIP+ +D R+ R+ D +++F L VKC + ++D
Sbjct: 111 GLIPIRADP---RLFEYRNQGDEDGTEIDTLQFQLKVKCTRNPQAAKDSSDPNELYLNHK 167
Query: 120 LKSTDARVVPVTSRNRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
+ + +P+ ++ AD+ G DDILI +LR GQEL L + KG GK+HAK
Sbjct: 168 VYTKHMTWIPLGNQ---ADVFPEGTIRPVHDDILIAQLRPGQELDLLMHCVKGIGKDHAK 224
Query: 176 WNPTA 180
++P A
Sbjct: 225 FSPVA 229
>gi|221056596|ref|XP_002259436.1| DNA-diDNA-directed RNA polymerase I [Plasmodium knowlesi strain H]
gi|193809507|emb|CAQ40209.1| DNA-diDNA-directed RNA polymerase I, putative [Plasmodium knowlesi
strain H]
Length = 333
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 14/163 (8%)
Query: 22 QVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDR 81
+V++ +S+AN+LRR+ +AE PT+AI+ V + N+ +++DE + R+GLIP D D
Sbjct: 63 EVKNLNVSIANALRRIMLAEVPTIAIEKVNIFQNTGIIADEILCHRLGLIPFKFD--ADL 120
Query: 82 ILYSRDCTCVD----FCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDA 137
I + + + FC F L VK T+ + S D + P+ + +
Sbjct: 121 INFKEEYEKYNHLNCFC------FKLHVKFTKKAGSSETSQSIYSRDLKWCPINEQQKLR 174
Query: 138 DMNEYGET--DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+ D+ILI KL GQE+ L + +KG GK HAKW+P
Sbjct: 175 FQKNPPKVVDDNILITKLANGQEIELICFLEKGIGKTHAKWSP 217
>gi|302348806|ref|YP_003816444.1| DNA-directed RNA polymerase subunit D [Acidilobus saccharovorans
345-15]
gi|302329218|gb|ADL19413.1| DNA-directed RNA polymerase subunit D [Acidilobus saccharovorans
345-15]
Length = 287
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 17/175 (9%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I +L + + +E ++ N+LRR+ ++E PTMA+D+V N + + DE IA R+
Sbjct: 6 VSIVELGNSRITVSMEGFPVAYGNALRRLALSEVPTMAVDFVYFYDNESSVYDEIIAHRL 65
Query: 69 GLIPLTSDEVVDRILYSRDCT-CVDFCSECSVEFTLDVKCVDDQTR--HVTTADLKSTDA 125
GL+ L SDE + + +C+ + S C + L+ + D +V +DLK +D
Sbjct: 66 GLLVLRSDEALRKYGSPEECSNASENDSHCFAQVYLEYEVPQDAASGVYVKASDLKFSDP 125
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ P+ Y ET IV L GQ + L YA+ G G EH KW+P +
Sbjct: 126 DIRPI-----------YPETP---IVYLAPGQRIHLVGYARLGRGYEHGKWSPAS 166
>gi|213403846|ref|XP_002172695.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Schizosaccharomyces japonicus yFS275]
gi|212000742|gb|EEB06402.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Schizosaccharomyces japonicus yFS275]
Length = 349
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 100/192 (52%), Gaps = 17/192 (8%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ + ++ IT L D N+ F + + S+ N+ RR+ IAE PT+AI++V + N+++L DE
Sbjct: 42 FKKKLNIKITSLDDLNMTFDISGIDASIVNAFRRILIAEIPTLAIEFVYIINNTSILQDE 101
Query: 63 FIASRIGLIPLTSDEVVDRILY----SRDCTCVDFCSECSVEFTLDVKC----------V 108
++ R+GLIPL +D + + + T D+ +V F+L+VKC
Sbjct: 102 VLSHRLGLIPLKADPDMFKWFVRPGPGMEATHTDY---DTVVFSLNVKCDFNKEAAPGET 158
Query: 109 DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKG 168
D + ++ + L R AD +I++ KLR GQE+ L A+A G
Sbjct: 159 DPKKLYLNSEVLSGELVWKPQGRQAERFADNPLTVVNPNIVVAKLRPGQEIDLEAHAILG 218
Query: 169 FGKEHAKWNPTA 180
G++HAK++P +
Sbjct: 219 IGQDHAKFSPVS 230
>gi|145506343|ref|XP_001439135.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406313|emb|CAK71738.1| unnamed protein product [Paramecium tetraurelia]
Length = 297
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 91/180 (50%), Gaps = 24/180 (13%)
Query: 5 NQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFI 64
+Q + I +L+DE KF E +LS+AN++RRV IAE P MAI +V + N++ LSDEF+
Sbjct: 10 SQHRIEILELSDEKCKFSFEG-DLSIANAIRRVMIAEVPVMAIHFVDIIENTSPLSDEFL 68
Query: 65 ASRIG------LIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTA 118
A R+ L+ + D+ + V FTL K ++D +T+
Sbjct: 69 AQRLAKCMIGKLMQIPLDD-----------------QKTKVVFTLRQKNLNDAPLEITSQ 111
Query: 119 DLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
L+ +V + R G+ I I +L K Q + +R +A KGFGK HAKW P
Sbjct: 112 HLEPEFGQVGEMAIRPVRMFSPINGKEVGIPITRLGKNQSVHVRCHALKGFGKMHAKWTP 171
>gi|327262314|ref|XP_003215970.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Anolis carolinensis]
Length = 344
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 100/182 (54%), Gaps = 15/182 (8%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + ++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVISMDESTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSEC-SVEFTLDVKCVDDQTRHVTTAD-------- 119
GLIP+ +D R+ + + D C E +++F L +KC + ++D
Sbjct: 111 GLIPICADP---RLFEYK--SEEDECDEINTLQFQLKIKCSRNPEAPKESSDPNELYINH 165
Query: 120 -LKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+ S VP+ S+ + + DDILI +LR GQE+ + + KG GK+HAK++P
Sbjct: 166 KVYSKHMEWVPLGSQADNMNAGFRPVHDDILIAQLRPGQEIDVLMHCVKGIGKDHAKFSP 225
Query: 179 TA 180
A
Sbjct: 226 VA 227
>gi|405120194|gb|AFR94965.1| rpa42 [Cryptococcus neoformans var. grubii H99]
Length = 350
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 94/180 (52%), Gaps = 13/180 (7%)
Query: 11 ITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGL 70
+ LT ++F + + S+AN+LRR IAE PT+AI+ V + N++++ DE + R+GL
Sbjct: 51 VQRLTPSTIEFDLVGVDASIANALRRTLIAEVPTVAIEEVYVWNNTSIMQDEVLCHRVGL 110
Query: 71 IPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKC-----VD----DQTRHVTTADLK 121
+PL D R L R +V F L V+C VD D + +++
Sbjct: 111 VPLKIDP---RSLRYRPSANSQPHEHDTVVFDLRVRCDRRPNVDRSETDPKKMYFDSNVY 167
Query: 122 STDARVVPVTSRNRD-ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S + VP + + DDIL+VKLR GQ++ L +A+KG G +HAK++P A
Sbjct: 168 SGMLKWVPSGDQKKKFKGKAPRPVNDDILLVKLRPGQQVDLHCFARKGVGADHAKFSPVA 227
>gi|392593120|gb|EIW82446.1| hypothetical protein CONPUDRAFT_136940 [Coniophora puteana
RWD-64-598 SS2]
Length = 358
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 94/179 (52%), Gaps = 13/179 (7%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
+V + L++ ++ F + + S+AN+ RR+ IAE PT+AI+ V + N++V+ DE +A R
Sbjct: 48 NVQVNRLSNRSIDFDLVGVDASIANAFRRILIAEVPTIAIEQVYVWNNTSVIVDEVLAHR 107
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKC---------VDDQTRHVTTA 118
+GL+PL D L ++ + ++ F L+V C V D +
Sbjct: 108 LGLVPLNVDP---SFLEFKESPSIQATDRNTLVFKLEVTCTRNRNTPKDVTDPKMLYNNS 164
Query: 119 DLKSTDARVVPVTSRNRDADMN-EYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
++ S+D R VP + N +I++ KLR GQE+ + +A KG GK+HAK+
Sbjct: 165 EVLSSDLRWVPQGEQEEIFAANIPTPSNPNIVLAKLRPGQEVNMELHAVKGVGKDHAKF 223
>gi|346979352|gb|EGY22804.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Verticillium
dahliae VdLs.17]
Length = 375
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 96/189 (50%), Gaps = 17/189 (8%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V L+ F + + S+AN+LRR+ I+E PT AI+ V + N++V+ DE +A R+
Sbjct: 55 VRYHQLSPSESSFSLIGVDASIANALRRILISEIPTFAIETVYIYNNTSVIQDEVLAHRL 114
Query: 69 GLIPLTSDEVVDR-ILYSR----DCTCVDFCSECSVEFTLDVKCVD---------DQTRH 114
GL+P T+++ R L R D T D +++ L ++C D T+
Sbjct: 115 GLVPFTANKAGLRDFLRWRKKNPDGTPGDIFDYNTIQLRLRIECTRNPDAAPGEIDATKA 174
Query: 115 VTTADLKSTDARVVPVTSRNR--DADMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGK 171
A + ++D VP + D +N T+ DIL+ KLR GQ L + + KG G
Sbjct: 175 FRNAHVHASDIEYVPSGRQLEYFDGPLNTVRPTNPDILLAKLRPGQVLEMDMHMHKGIGS 234
Query: 172 EHAKWNPTA 180
+HAK++P A
Sbjct: 235 DHAKFSPVA 243
>gi|58266722|ref|XP_570517.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110920|ref|XP_775924.1| hypothetical protein CNBD3310 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258590|gb|EAL21277.1| hypothetical protein CNBD3310 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226750|gb|AAW43210.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 350
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 94/180 (52%), Gaps = 13/180 (7%)
Query: 11 ITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGL 70
+ LT ++F + + S+AN+LRR IAE PT+AI+ V + N++++ DE + R+GL
Sbjct: 51 VQRLTPSTIEFDLVGVDASIANALRRTLIAEVPTVAIEEVYVWNNTSIMQDEVLCHRVGL 110
Query: 71 IPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKC-----VD----DQTRHVTTADLK 121
+PL D R L R +V F L V+C VD D + +++
Sbjct: 111 VPLKIDP---RSLRYRPSANSQPHEHDTVVFDLRVRCDRRPNVDRSETDPKKMYFDSNVY 167
Query: 122 STDARVVPVTSRNRD-ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S + VP + + DDIL+VKLR GQ++ L +A+KG G +HAK++P A
Sbjct: 168 SGMLKWVPSGDQKKKFKGKAPRPVNDDILLVKLRPGQQVDLHCFARKGVGADHAKFSPVA 227
>gi|83282536|ref|XP_729812.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Plasmodium yoelii yoelii 17XNL]
gi|23488700|gb|EAA21377.1| DNA-directed RNA polymerases i and iii 40 kDa polypeptide
[Plasmodium yoelii yoelii]
Length = 286
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 25/173 (14%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD 80
++++ +S+AN+LRR+ I+E PT+AI+ V + N+ V++DE + R+GLIP D D
Sbjct: 13 LEIKNLNVSIANALRRIMISEVPTIAIEKVNIFQNTGVIADEILCHRLGLIPFKFD--AD 70
Query: 81 RILY--------SRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK---STDARVVP 129
+ Y + +C C F L VKC + + S D + P
Sbjct: 71 LLNYKDPYEKYNNLNCFC----------FKLHVKCNSINNNKNGNENYQCIYSKDLKWCP 120
Query: 130 VTSRNRDADMNEYGET--DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ + N + D+ILI KL GQE+ L + +KG GK HAKW+P
Sbjct: 121 LNEEQKKKFENNPPKVVEDNILITKLGSGQEIELICFLEKGIGKTHAKWSPVC 173
>gi|448091116|ref|XP_004197249.1| Piso0_004496 [Millerozyma farinosa CBS 7064]
gi|448095598|ref|XP_004198280.1| Piso0_004496 [Millerozyma farinosa CBS 7064]
gi|359378671|emb|CCE84930.1| Piso0_004496 [Millerozyma farinosa CBS 7064]
gi|359379702|emb|CCE83899.1| Piso0_004496 [Millerozyma farinosa CBS 7064]
Length = 335
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 97/191 (50%), Gaps = 28/191 (14%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
++I+ +++ + F + + S+AN+ RR+ IAE P++A + + + N++V+ DE +A RI
Sbjct: 43 INISHISERSANFDLVHVDTSIANAFRRIMIAEVPSVAAEQIYIFNNTSVIQDEVLAHRI 102
Query: 69 GLIPLTSDEVVDRILYSRDCTCVD----FCSECSVEFTLDVKCVDD-------------- 110
GL+PL VD L S VD F E ++ +LDV C +
Sbjct: 103 GLVPLK----VDPDLLSWVDPTVDEKDRFTDENTIVLSLDVSCSKNPHAPQGSTDPKELY 158
Query: 111 QTRHVTTADLK-STDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGF 169
+ HV DLK R V + N + +IL+ KLR GQE+ LRA+ G
Sbjct: 159 RNSHVYAKDLKFEPQGRQVEIFKNNPVVPTDP-----NILLAKLRPGQEISLRAHCILGI 213
Query: 170 GKEHAKWNPTA 180
G +HAK++P A
Sbjct: 214 GSDHAKFSPVA 224
>gi|410670316|ref|YP_006922687.1| DNA-directed RNA polymerase subunit D [Methanolobus psychrophilus
R15]
gi|409169444|gb|AFV23319.1| DNA-directed RNA polymerase subunit D [Methanolobus psychrophilus
R15]
Length = 265
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 21/170 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I ++++ + KF + D + AN +RR +++ PT+AI +V + N++VL DE + R+
Sbjct: 5 VDILEMSERSAKFVLSDVSAAFANGIRRAALSDVPTLAITYVNIYNNTSVLFDEQLGLRL 64
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDF-CSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
LIPL ++ ++ + +C C C C V TL + R V + D S+D V
Sbjct: 65 ALIPLAAN--IEEFVPVEECICGGSECPACRVSLTLSA----EGPRMVYSGDFVSSDETV 118
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P + +I I++L++GQ++ L A A G+G +HA+W
Sbjct: 119 QPAEA--------------NIPIIELKEGQKVVLEAIAHMGYGNQHARWQ 154
>gi|440902447|gb|ELR53239.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Bos grunniens
mutus]
Length = 343
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 99/183 (54%), Gaps = 18/183 (9%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ +++F L V+C TR+ A S +
Sbjct: 111 GLIPIHADP---RLFEYRNQGDEGGTEIDTLQFRLQVRC----TRNPHAAKDSSDPNELY 163
Query: 129 PVTSRN-------RDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
+ +R+ AD+ G DDILI +LR GQE+ L + KG GK+HAK++
Sbjct: 164 VMYTRHMTWVPLGNQADLFPEGAIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFS 223
Query: 178 PTA 180
P A
Sbjct: 224 PVA 226
>gi|320165910|gb|EFW42809.1| polymerase I polypeptide C [Capsaspora owczarzaki ATCC 30864]
Length = 414
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 91/175 (52%), Gaps = 19/175 (10%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
V F + + ++AN+ RR+ IAE PTMAI+ V N++++ DE +A R+GL+P+ +D
Sbjct: 124 VTFDMVGVDAAIANAFRRILIAEVPTMAIETVFFTNNTSIIHDEALAHRLGLVPIRADP- 182
Query: 79 VDRILYSRDCTCVDFCSECSVEFTLDVKC----------VDDQTRHVTTADLKSTDARVV 128
R +RD ++ FTLDVKC DD +++ + L S +V
Sbjct: 183 --RYFETRDTPDTQATDRNTLVFTLDVKCTKNPHASPNATDDTEKYINSRVLSSD---IV 237
Query: 129 PVTSRNRDADMNEYGET---DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V +++A + DDILI KLR GQ + + K G++HAK++P
Sbjct: 238 WVPKGDQEAQFQDAPIAPVHDDILIAKLRPGQAVACEMHCIKSIGRDHAKFSPVG 292
>gi|241730129|ref|XP_002412264.1| transferase, putative [Ixodes scapularis]
gi|215505503|gb|EEC14997.1| transferase, putative [Ixodes scapularis]
gi|442748497|gb|JAA66408.1| Putative rna polymerase i and iii subunit [Ixodes ricinus]
Length = 344
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 96/183 (52%), Gaps = 14/183 (7%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
+ I L D ++F + ++AN++RR+ +AE PTMA D V + N++++ DE +A R
Sbjct: 47 QIGIVSLDDMTMEFDMIGVNPAIANAIRRILLAEVPTMAPDKVFMYNNTSIVQDEVLAHR 106
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDD--QTRHVTTADLKSTDA 125
IGL+P D R+ R+ + E +VEF L VKC + + TT D D
Sbjct: 107 IGLVPFNIDP---RMFDYREKDS-EGSPEDTVEFELKVKCTRNPQAPKDATTPDELYKDH 162
Query: 126 RV-------VPVTSRNR-DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
V P+ S+ + DDI++ KLR GQE+ L+ + KG G++HAK++
Sbjct: 163 VVYTRHLTWTPIGSQAEIFGNKPPKPVYDDIILAKLRPGQEIDLKLHCMKGTGQDHAKFS 222
Query: 178 PTA 180
P A
Sbjct: 223 PVA 225
>gi|213513431|ref|NP_001134298.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Salmo salar]
gi|209732188|gb|ACI66963.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Salmo salar]
Length = 353
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 100/182 (54%), Gaps = 13/182 (7%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 58 IDVVQMDETSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLIYNNTSIIQDEILAHRL 117
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK------- 121
GLIP+ +D R+ R+ + +++ L +KC + +AD +
Sbjct: 118 GLIPIKADP---RLFEYRNAGDEEGTEIDTIQLQLKIKCTRNPRATKDSADPRELYLNHM 174
Query: 122 --STDARVVPVTSR-NRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
S D + P+ ++ + AD N DIL+ +LR GQEL + + KG G++HAK++P
Sbjct: 175 VYSKDMKWAPIGNQADVFADANIGPVHGDILLAQLRPGQELDIVMHCVKGIGQDHAKFSP 234
Query: 179 TA 180
A
Sbjct: 235 VA 236
>gi|429962182|gb|ELA41726.1| hypothetical protein VICG_01230 [Vittaforma corneae ATCC 50505]
Length = 298
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 94/178 (52%), Gaps = 16/178 (8%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ N + I T +++F + + S+AN+LRR+ I++ PTMAI +V + N+TV DE
Sbjct: 23 FINNLQLKIISKTASSIEFDILNCHPSIANTLRRILISKVPTMAIHYVSVYENNTVFPDE 82
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS 122
+IA R+GLIPL ++ + Y +D E + E L+ + D+T +L S
Sbjct: 83 YIAHRLGLIPLEANP--EYFSYFKD--------EETFENVLNFRI--DKTADKEPVNLMS 130
Query: 123 TDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D VP + D + ++L+ K+ G ++ + A KG G++HAKW+P +
Sbjct: 131 DDIEFVPAEGQ----DHFSFRFKPNVLVCKMVPGNQVEMTFKAIKGRGEQHAKWSPVS 184
>gi|321257697|ref|XP_003193678.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide (AC40)
[Cryptococcus gattii WM276]
gi|317460148|gb|ADV21891.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide (AC40)
[Cryptococcus gattii WM276]
Length = 350
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 94/180 (52%), Gaps = 13/180 (7%)
Query: 11 ITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGL 70
+ LT ++F + + S+AN+LRR IAE PT+AI+ V + N++++ DE + R+GL
Sbjct: 51 VQRLTPSTIEFDLVGVDASIANALRRTLIAEVPTVAIEEVYVWNNTSIMQDEVLCHRVGL 110
Query: 71 IPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKC-----VD----DQTRHVTTADLK 121
+PL D R L R +V F L V+C VD D + +++
Sbjct: 111 VPLKIDP---RSLRYRPSANSQPHEHDTVVFDLRVRCDRRPNVDRSEKDPKKMYFDSNVY 167
Query: 122 STDARVVPVTSRNRDADMNEYGE-TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S + VP + + DDIL+VKLR GQ++ L +A+KG G +HAK++P A
Sbjct: 168 SGMLKWVPSGDQKKKFKGKAPKPVNDDILLVKLRPGQQVDLHCFARKGVGADHAKFSPVA 227
>gi|195035209|ref|XP_001989070.1| GH11517 [Drosophila grimshawi]
gi|193905070|gb|EDW03937.1| GH11517 [Drosophila grimshawi]
Length = 333
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 102/190 (53%), Gaps = 15/190 (7%)
Query: 3 YANQPSVHITDLTDEN-VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSD 61
+ N+ V I +EN ++F + ++AN+ RR+ ++E P+MAI+ V + N++++ D
Sbjct: 36 FKNKLQVVIVRNDEENGLEFDLIGVYPAIANAFRRLMLSEVPSMAIEKVYIYNNTSIIQD 95
Query: 62 EFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSEC-SVEFTLDVKCV--DDQTRHVTTA 118
E +A R+GL+PL +D R+ R + SE ++E+ L VKC D T+ +
Sbjct: 96 EVLAHRMGLLPLRADP---RLFAYRSEESTEQGSEQDTLEYELKVKCTRRKDATKEQSNF 152
Query: 119 DLKSTDARVVPVTSR--NRDADMNEYGET------DDILIVKLRKGQELRLRAYAKKGFG 170
D + +V + + Y E+ DDILI +LR G EL LR A KG G
Sbjct: 153 DDIYKNHKVYSGHLKWLPKGKQGQIYSESSVNCIHDDILIAQLRPGHELDLRLIAVKGIG 212
Query: 171 KEHAKWNPTA 180
K+HAK++P A
Sbjct: 213 KDHAKFSPVA 222
>gi|307181041|gb|EFN68815.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Camponotus
floridanus]
Length = 344
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 103/198 (52%), Gaps = 29/198 (14%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y + + I D+ ++F + ++S+ N+ RR+ I+E P+MAID V + N+++L DE
Sbjct: 35 YIQELRIEIVREEDKELEFDIIGCDISLVNAFRRILISEVPSMAIDKVFIINNTSLLQDE 94
Query: 63 FIASRIGLIPLTSDEVVDRIL-YSRDCTCVDFCSEC-SVEFTLDVKCV------------ 108
+A R+GLIPL +D R+ Y + SE ++++ L V C
Sbjct: 95 VLAHRLGLIPLRAD---PRLFEYPPSGRKDEEVSEQDTLKYELKVTCTTHPQAPKYSRLP 151
Query: 109 DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGE------TDDILIVKLRKGQELRLR 162
+D R+ + + S D + VP+ R DM +G +DILI K+R G E+
Sbjct: 152 EDMYRN---SKVYSKDIKWVPI---GRQGDMFPHGTEQFSVLENDILICKMRPGHEIHAF 205
Query: 163 AYAKKGFGKEHAKWNPTA 180
+A KG GK+HAK++P A
Sbjct: 206 MHAVKGIGKDHAKFSPVA 223
>gi|156099087|ref|XP_001615546.1| DNA-directed RNA polymerase I [Plasmodium vivax Sal-1]
gi|148804420|gb|EDL45819.1| DNA-directed RNA polymerase I, putative [Plasmodium vivax]
Length = 333
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 14/163 (8%)
Query: 22 QVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDR 81
+V++ +S+AN+LRR+ +AE PT+AI+ V + N+ +++DE + R+GLIP D D
Sbjct: 63 EVKNLNVSIANALRRIMLAEVPTIAIEKVNIFQNTGIIADEILCHRLGLIPFKFD--ADL 120
Query: 82 ILYSRDCTCVD----FCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDA 137
I + + + FC F L VK T + S D + P+ +
Sbjct: 121 INFKEEYEKYNHLNCFC------FKLHVKFTKKAGSSETCQSIYSRDLKWCPINEHQKAR 174
Query: 138 DMNEYGET--DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
D+ILI KL GQE+ L + +KG GK HAKW+P
Sbjct: 175 FQKNPPRVVDDNILITKLSNGQEIELICFLEKGIGKTHAKWSP 217
>gi|261333779|emb|CBH16774.1| DNA-directed RNA polymerase, alpha subunit,putative [Trypanosoma
brucei gambiense DAL972]
Length = 337
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 83/172 (48%), Gaps = 13/172 (7%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E + F +++ VAN RR+ + E P A D + +E N V+ DE +A RIGL+PL
Sbjct: 49 ETITFDMDNVSPPVANMFRRLMLTEVPVFAFDRILIEHNDGVVPDELLAHRIGLVPLAGP 108
Query: 77 EVVDRILYSRDCTCVDFCS---ECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSR 133
V + Y D V F + E + F LDV R V T + S + P+ +
Sbjct: 109 --VSSMQYITDSASVGFDNLDPERVLLFELDVTA----KRDVPTTSVYSGHLKWQPIAKQ 162
Query: 134 NRDADMNE----YGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
A +E + DI++ +L GQ L+LRA A KG G HAKW P A
Sbjct: 163 EELAARSEDDRVFLVHPDIVLTRLGPGQRLKLRAIAIKGIGAVHAKWTPVAA 214
>gi|71749338|ref|XP_828008.1| DNA-directed RNA polymerase subunit alpha [Trypanosoma brucei
TREU927]
gi|70833392|gb|EAN78896.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 337
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 83/172 (48%), Gaps = 13/172 (7%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E + F +++ VAN RR+ + E P A D + +E N V+ DE +A RIGL+PL
Sbjct: 49 ETITFDMDNVSPPVANMFRRLMLTEVPVFAFDRILIEHNDGVVPDELLAHRIGLVPLAGP 108
Query: 77 EVVDRILYSRDCTCVDFCS---ECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSR 133
V + Y D V F + E + F LDV R V T + S + P+ +
Sbjct: 109 --VSSMQYITDSASVGFDNLDPERVLLFELDVTA----KRDVPTTSVYSGHLKWQPIAKQ 162
Query: 134 NRDADMNE----YGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
A +E + DI++ +L GQ L+LRA A KG G HAKW P A
Sbjct: 163 EELAARSEDDRVFLVHPDIVLTRLGPGQRLKLRAIAIKGIGAVHAKWTPVAA 214
>gi|395324899|gb|EJF57331.1| insert subdomain of RNA polymerase alpha subunit [Dichomitus
squalens LYAD-421 SS1]
Length = 370
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 92/182 (50%), Gaps = 20/182 (10%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + L+ +V+F + + ++AN+ RR+ IAE PT+AI+ V + N++V+ DE +A RI
Sbjct: 57 VSVKRLSQRSVEFDLVGVDAAIANAFRRILIAEVPTIAIEDVFVFNNTSVIHDEILAQRI 116
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQ--------TRHVTTADL 120
GLIPL D R+ R + V F L+V C + +V + DL
Sbjct: 117 GLIPLNVD---PRLFDFRPPGGIPMDRNTLV-FKLNVTCERAKKGSSSPYINEYVKSGDL 172
Query: 121 --KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+ + SR A DI++ KLR GQ + + +A KG GKEHAKW+P
Sbjct: 173 VWEPQGEQATVFASRPPAAT------NPDIVLAKLRPGQVIEMELHAIKGVGKEHAKWSP 226
Query: 179 TA 180
A
Sbjct: 227 VA 228
>gi|269860747|ref|XP_002650092.1| DNA-directed RNA polymerases I, II, and III, subunit 3
[Enterocytozoon bieneusi H348]
gi|220066464|gb|EED43944.1| DNA-directed RNA polymerases I, II, and III, subunit 3
[Enterocytozoon bieneusi H348]
Length = 245
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 96/177 (54%), Gaps = 21/177 (11%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ + +LT N+KF + ++ +S AN+LRR+ + ETP +AID++++E N+++ DE +A+R+
Sbjct: 6 LELLELTSTNIKFTI-NSNVSFANALRRILLGETPIVAIDYIEVEENTSIFPDEMLANRL 64
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
G +PL E + + +CTC ++C +C++ L+ + +V DL
Sbjct: 65 GFLPL---ENKNNLKDKNNCTCENYCDDCALVLILNKTNKTSENINVLGKDL-------- 113
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKE----HAKWNPTAG 181
+ R A++ ++ I KL Q L+++ A+KG + HAK+ P +
Sbjct: 114 IIEGSGRPANL-----LNNTFICKLAPNQTLKIKCIARKGLVRNGSITHAKYCPVSA 165
>gi|237823480|pdb|2WAQ|D Chain D, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823493|pdb|2WB1|D Chain D, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823508|pdb|2WB1|S Chain S, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|323462791|pdb|2Y0S|D Chain D, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|323462806|pdb|2Y0S|S Chain S, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|400260745|pdb|4AYB|D Chain D, Rnap At 3.2ang
gi|400260762|pdb|4B1O|D Chain D, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260781|pdb|4B1P|S Chain S, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814435|gb|ACL36491.1| RNA polymerase subunit 3 [Sulfolobus shibatae B12]
Length = 265
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 16/174 (9%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
S+++ D+ + E L N++RR + P M+ID V N++ L DE +A R
Sbjct: 2 SINLLHKDDKRIDLVFEGYPLEFVNAIRRAAMLYVPVMSIDDVYFIENNSPLYDEILAHR 61
Query: 68 IGLIPLTSDEVVDRILYSRDCT-CVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
+ LIP TS+E +D + +C C + C +C + ++ + + ++ + + + D+KS D
Sbjct: 62 LALIPFTSEEALDTYRWPEECIDCTENCEKCYTKIYIEAEAL-NEPKMLYSKDIKSEDPS 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+VP++ DI IV L Q++ L A + G+GKEHAK+ P +
Sbjct: 121 IVPISG--------------DIPIVLLGANQKISLEARLRLGYGKEHAKFIPVS 160
>gi|193704512|ref|XP_001945905.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Acyrthosiphon pisum]
Length = 325
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 97/174 (55%), Gaps = 9/174 (5%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
++I +D +++F + +++VANSLRRV I+E P+MAI+ V + N++ + DE +A R+
Sbjct: 34 INIISRSDNDLEFDLVGIDVAVANSLRRVIISEVPSMAIEKVHIYQNTSYILDEILAHRL 93
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQT-----RHVTTADLKST 123
GLIPL +D R ++ + S+ + + +KC + + + +
Sbjct: 94 GLIPLKADP---RQFKMKEDENSEPNEHDSLVYEMKIKCTKKDLDALAHKQFISFPVYAK 150
Query: 124 DARVVPVTSRNRDADMNEYG-ETDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
+ +P+ ++ + G +DDILI KLR GQE+ L+ +A KG K+HAK+
Sbjct: 151 HIKWLPLGNQKDIFTEKDVGIISDDILIAKLRPGQEIELKMFAVKGIPKDHAKF 204
>gi|301757344|ref|XP_002914512.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Ailuropoda melanoleuca]
gi|281345711|gb|EFB21295.1| hypothetical protein PANDA_002414 [Ailuropoda melanoleuca]
Length = 346
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + L + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHLDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ + +++F L V+C TR+ A S+D +
Sbjct: 111 GLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQVRC----TRNPHAAK-DSSDPNEL 162
Query: 129 PVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
V + AD+ G DDILI +LR GQE+ L + KG GK+H
Sbjct: 163 YVNHKVYTRHMTWVPLGNQADLFPEGAIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 222
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 223 AKFSPVA 229
>gi|443897408|dbj|GAC74749.1| RNA polymerase I and III, subunit RPA40/RPC40 [Pseudozyma
antarctica T-34]
Length = 404
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 14/180 (7%)
Query: 11 ITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGL 70
IT L+D + +F + + S+AN++RRV +AE PT+AI+ V + N++++ DE ++ R+GL
Sbjct: 103 ITRLSDASCEFDLIGVDASIANAIRRVLMAEVPTVAIEHVYIWNNTSIIQDEVLSHRLGL 162
Query: 71 IPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQ--TRHVTTADLKSTDARVV 128
+PL D++L + D +V F L KC ++ R T D V
Sbjct: 163 VPLAIHP--DKVLMRQPGDDAD--DSNTVVFHLKAKCERNRNAARGETDPDKLYIGHNVY 218
Query: 129 -------PVTSRNRD-ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
P + D AD D ILI KLR GQEL L + +KG GK+HAK++P A
Sbjct: 219 SGALEWDPKGGQEDDFADAPPRPVHDRILIAKLRPGQELDLELHCEKGIGKDHAKFSPVA 278
>gi|84000223|ref|NP_001033213.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Bos taurus]
gi|122143987|sp|Q32L22.1|RPAC1_BOVIN RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=DNA-directed RNA polymerase I subunit C; Short=RNA
polymerases I and III subunit AC1
gi|81673907|gb|AAI09804.1| Polymerase (RNA) I polypeptide C, 30kDa [Bos taurus]
gi|296474425|tpg|DAA16540.1| TPA: DNA-directed RNA polymerases I and III subunit RPAC1 [Bos
taurus]
Length = 346
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 99/187 (52%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ +++F L V+C TR+ A S+D +
Sbjct: 111 GLIPIHADP---RLFEYRNQGDEGGTEIDTLQFRLQVRC----TRNPHAAK-DSSDPNEL 162
Query: 129 PVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
V R AD+ G DDILI +LR GQE+ L + KG GK+H
Sbjct: 163 YVNHRVYTRHMTWVPLGNQADLFPEGAIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 222
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 223 AKFSPVA 229
>gi|56605738|ref|NP_001008331.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Rattus
norvegicus]
gi|55778316|gb|AAH86597.1| Polymerase (RNA) I polypeptide C [Rattus norvegicus]
gi|149069363|gb|EDM18804.1| RNA polymerase 1-1, isoform CRA_a [Rattus norvegicus]
Length = 346
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + ++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDESTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ + +++F L V+C TR+ + A S+D +
Sbjct: 111 GLIPILADP---RLFEYRNPGEEEGTEIDTLQFRLQVRC----TRNPSAAK-DSSDPNEL 162
Query: 129 PVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
V + AD+ G DDILI +LR GQE+ L + KG GK+H
Sbjct: 163 YVNHKVYTRHMTWVPLGNQADVFPEGTVRPVHDDILIAQLRPGQEIDLMMHCVKGIGKDH 222
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 223 AKFSPVA 229
>gi|227828307|ref|YP_002830087.1| RNA polymerase insert [Sulfolobus islandicus M.14.25]
gi|229585537|ref|YP_002844039.1| RNA polymerase insert [Sulfolobus islandicus M.16.27]
gi|238620499|ref|YP_002915325.1| RNA polymerase insert [Sulfolobus islandicus M.16.4]
gi|385773987|ref|YP_005646554.1| RNA polymerase, subunit D [Sulfolobus islandicus HVE10/4]
gi|385776629|ref|YP_005649197.1| RNA polymerase insert [Sulfolobus islandicus REY15A]
gi|259494206|sp|C3N054.1|RPOD_SULIA RecName: Full=DNA-directed RNA polymerase subunit D
gi|259494207|sp|C4KJ93.1|RPOD_SULIK RecName: Full=DNA-directed RNA polymerase subunit D
gi|259494209|sp|C3MZ05.1|RPOD_SULIM RecName: Full=DNA-directed RNA polymerase subunit D
gi|227460103|gb|ACP38789.1| RNA polymerase insert [Sulfolobus islandicus M.14.25]
gi|228020587|gb|ACP55994.1| RNA polymerase insert [Sulfolobus islandicus M.16.27]
gi|238381569|gb|ACR42657.1| RNA polymerase insert [Sulfolobus islandicus M.16.4]
gi|323475377|gb|ADX85983.1| RNA polymerase insert [Sulfolobus islandicus REY15A]
gi|323478102|gb|ADX83340.1| RNA polymerase, subunit D [Sulfolobus islandicus HVE10/4]
Length = 265
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 16/174 (9%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
S+++ D+ + E L N++RR + P M+ID V N++ L DE +A R
Sbjct: 2 SINLLHKDDKRIDLVFEGYPLEFVNAIRRAAMLYVPVMSIDDVYFIENNSPLYDEILAHR 61
Query: 68 IGLIPLTSDEVVDRILYSRDCT-CVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
+ LIP TS+E +D + +C C + C +C + ++ + + ++ + + + D+KS D
Sbjct: 62 LALIPFTSEEALDTYRWPEECIECTENCEKCYTKIYIEAEAL-NEPKMLYSKDIKSEDPS 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+VP++ DI IV L Q++ L A + G+GKEHAK+ P +
Sbjct: 121 IVPISG--------------DIPIVLLGANQKISLEARLRLGYGKEHAKFIPVS 160
>gi|225717016|gb|ACO14354.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Esox lucius]
Length = 239
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 90/162 (55%), Gaps = 17/162 (10%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
++F + + S+AN+ RR+ +AE PTMA++ V + N++++ DE +A R+GLIP+ +D
Sbjct: 62 MEFDMVGIDASIANAFRRILLAEVPTMAVEKVFIYNNTSIIQDEVLAQRLGLIPIKADP- 120
Query: 79 VDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDAD 138
R+ R+ + +++ L +KC + H T D ++ ++
Sbjct: 121 --RLFEYRNAGDEEGTEIDTIQLQLKIKCTRN---HQATKD-----------SADPQELY 164
Query: 139 MNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+N + DIL+ KLR GQEL + + KG G++HAK++P A
Sbjct: 165 LNHMVYSKDILLAKLRPGQELDIVMHCVKGIGQDHAKFSPVA 206
>gi|156849157|ref|XP_001647459.1| hypothetical protein Kpol_1018p139 [Vanderwaltozyma polyspora DSM
70294]
gi|156118145|gb|EDO19601.1| hypothetical protein Kpol_1018p139 [Vanderwaltozyma polyspora DSM
70294]
Length = 335
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 95/187 (50%), Gaps = 20/187 (10%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
++I+ + F + + + S+AN+ RR+ I+E P++A+++V N++VL DE +A RI
Sbjct: 42 INISSINSREANFDLINIDTSIANAFRRIMISEVPSVAVEYVYFLNNTSVLQDEVLAHRI 101
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PL D + + S F E ++ +L+VKC + A TD +++
Sbjct: 102 GLVPLKVDPDMLSWIDSELPEEEKFTDENTIVLSLNVKCTMN-----PDAPKDCTDPKIL 156
Query: 129 PVTSR--NRDADMNEYGE-------------TDDILIVKLRKGQELRLRAYAKKGFGKEH 173
S RD G+ DIL+ KLR GQE+ L+A+ G G +H
Sbjct: 157 YKNSNVYARDLKFEPQGKQVESFANYPVVPANPDILLCKLRPGQEISLKAHCILGIGSDH 216
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 217 AKFSPVA 223
>gi|426250337|ref|XP_004018893.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Ovis aries]
Length = 346
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 99/187 (52%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ +++F L V+C TR+ A S+D +
Sbjct: 111 GLIPIHADP---RLFEYRNQGDEGGTEIDTLQFRLQVRC----TRNPHAAK-DSSDPNEL 162
Query: 129 PVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
V R AD+ G DDILI +LR GQE+ L + KG GK+H
Sbjct: 163 YVNHRVYTRHMTWVPLGNQADLFPEGAIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 222
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 223 AKFSPVA 229
>gi|284998561|ref|YP_003420329.1| RNA polymerase, insert [Sulfolobus islandicus L.D.8.5]
gi|284446457|gb|ADB87959.1| RNA polymerase, insert [Sulfolobus islandicus L.D.8.5]
Length = 265
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 16/174 (9%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
S+++ D+ + E L N++RR + P M+ID V N++ L DE +A R
Sbjct: 2 SINLLHKDDKRIDLVFEGYPLEFVNAIRRATMLYVPVMSIDDVYFIENNSPLYDEILAHR 61
Query: 68 IGLIPLTSDEVVDRILYSRDCT-CVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
+ LIP TS+E +D + +C C + C +C + ++ + + ++ + + + D+KS D
Sbjct: 62 LALIPFTSEEALDTYRWPEECIECTENCEKCYTKIYIEAEAL-NEPKMLYSKDIKSEDPS 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+VP++ DI IV L Q++ L A + G+GKEHAK+ P +
Sbjct: 121 IVPISG--------------DIPIVLLGANQKISLEARLRLGYGKEHAKFIPVS 160
>gi|115452445|ref|NP_001049823.1| Os03g0295400 [Oryza sativa Japonica Group]
gi|108707636|gb|ABF95431.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein,
expressed [Oryza sativa Japonica Group]
gi|113548294|dbj|BAF11737.1| Os03g0295400 [Oryza sativa Japonica Group]
gi|222624742|gb|EEE58874.1| hypothetical protein OsJ_10475 [Oryza sativa Japonica Group]
Length = 379
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 23/191 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + LT+++++F + + S+AN+ RR+ IAE PTMAI+ V + N++V++DE ++ R+
Sbjct: 74 VVVNRLTEDDMEFDMIGIDASMANAFRRILIAEVPTMAIEKVLMADNTSVIADEVLSHRL 133
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTR-HVTTADLK-----S 122
GLIPL +D + + D ++ + L V C R V + DL+ S
Sbjct: 134 GLIPLDADPRLFEYISENDVP----TERNTIVYKLHVSCKKGSPRLTVKSGDLEWLPEGS 189
Query: 123 TDARVVPVTSRNRDADMNEYGETD-------------DILIVKLRKGQELRLRAYAKKGF 169
P S ++ + ++ DI I +L GQ + L +A KG
Sbjct: 190 QLPLASPAQSGDKQKTYTSFSQSQKDILEKPLGVKFKDITIARLGPGQAIELEVHAVKGI 249
Query: 170 GKEHAKWNPTA 180
GK HAKW+P A
Sbjct: 250 GKVHAKWSPVA 260
>gi|37935546|gb|AAP69818.1| RNA polymerase subunit I [Bos taurus]
Length = 250
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 97/181 (53%), Gaps = 24/181 (13%)
Query: 16 DEN-VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT 74
DEN ++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+GLIP+
Sbjct: 4 DENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIH 63
Query: 75 SDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSR- 133
+D R+ R+ +++F L V+C TR+ A S+D + V R
Sbjct: 64 ADP---RLFEYRNQGDEGGTEIDTLQFRLQVRC----TRNPHAAK-DSSDPNELYVNHRV 115
Query: 134 ----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
AD+ G DDILI +LR GQE+ L + KG GK+HAK++P
Sbjct: 116 YTRHMTWVPLGNQADLFPEGAIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPV 175
Query: 180 A 180
A
Sbjct: 176 A 176
>gi|410959240|ref|XP_003986220.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Felis catus]
Length = 346
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + L + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHLDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ + +++F L V+C TR+ A S+D +
Sbjct: 111 GLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQVRC----TRNPHAAK-DSSDPNEL 162
Query: 129 PVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
V + AD+ G DDILI +LR GQE+ L + KG GK+H
Sbjct: 163 YVNHKVYTRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 222
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 223 AKFSPVA 229
>gi|401884851|gb|EJT48989.1| hypothetical protein A1Q1_01900 [Trichosporon asahii var. asahii
CBS 2479]
Length = 356
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 91/177 (51%), Gaps = 13/177 (7%)
Query: 14 LTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPL 73
LT V+F + + S+ANSLRRV IAE PT+AI+ V + N++++ DE +A R+GL+PL
Sbjct: 63 LTPSTVEFDLVGVDASIANSLRRVMIAEVPTVAIEDVYVWNNTSIMQDEVLAHRVGLVPL 122
Query: 74 TSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKC---------VDDQTRHVTTADLKSTD 124
D R L + + F L VKC D + +++ +
Sbjct: 123 KIDP---RTLDFKPSNYSAPMENDTHVFDLRVKCDRRRDAAPGETDPKKLYYDSNVYTGM 179
Query: 125 ARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ VP + E DDIL+VKLR GQ + L +A+KG G +HAK++P A
Sbjct: 180 MKWVPSGQQKSKYKGKEPRPVLDDILLVKLRPGQMVDLHCFARKGVGADHAKYSPVA 236
>gi|355561732|gb|EHH18364.1| hypothetical protein EGK_14941 [Macaca mulatta]
gi|355763424|gb|EHH62170.1| hypothetical protein EGM_20381 [Macaca fascicularis]
gi|380818186|gb|AFE80967.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Macaca
mulatta]
gi|384950476|gb|AFI38843.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Macaca
mulatta]
Length = 346
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 99/187 (52%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ D ++ F L V+C TR+ A S+D +
Sbjct: 111 GLIPIHADP---RLFEYRNQGDEDGTEIDTLRFRLQVRC----TRNPHAAK-DSSDPNEL 162
Query: 129 PVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
V + AD+ G DDILI +LR GQE+ L + KG GK+H
Sbjct: 163 YVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 222
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 223 AKFSPVA 229
>gi|227831065|ref|YP_002832845.1| RNA polymerase insert [Sulfolobus islandicus L.S.2.15]
gi|229579946|ref|YP_002838345.1| RNA polymerase insert [Sulfolobus islandicus Y.G.57.14]
gi|229581393|ref|YP_002839792.1| RNA polymerase insert [Sulfolobus islandicus Y.N.15.51]
gi|259494208|sp|C3MJP7.1|RPOD_SULIL RecName: Full=DNA-directed RNA polymerase subunit D
gi|259494210|sp|C3NMQ0.1|RPOD_SULIN RecName: Full=DNA-directed RNA polymerase subunit D
gi|259494211|sp|C3N8R8.1|RPOD_SULIY RecName: Full=DNA-directed RNA polymerase subunit D
gi|227457513|gb|ACP36200.1| RNA polymerase insert [Sulfolobus islandicus L.S.2.15]
gi|228010661|gb|ACP46423.1| RNA polymerase insert [Sulfolobus islandicus Y.G.57.14]
gi|228012109|gb|ACP47870.1| RNA polymerase insert [Sulfolobus islandicus Y.N.15.51]
Length = 265
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 16/174 (9%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
S+++ D+ + E L N++RR + P M+ID V N++ L DE +A R
Sbjct: 2 SINLLHKDDKRIDLVFEGYPLEFVNAIRRATMLYVPVMSIDDVYFIENNSPLYDEILAHR 61
Query: 68 IGLIPLTSDEVVDRILYSRDCT-CVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
+ LIP TS+E +D + +C C + C +C + ++ + + ++ + + + D+KS D
Sbjct: 62 LALIPFTSEEALDTYRWPEECIECTENCEKCYTKIYIEAEAL-NEPKMLYSKDIKSEDPS 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+VP++ DI IV L Q++ L A + G+GKEHAK+ P +
Sbjct: 121 IVPISG--------------DIPIVLLGANQKISLEARLRLGYGKEHAKFIPVS 160
>gi|120538451|gb|AAI30019.1| Polr1c protein [Mus musculus]
Length = 347
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + ++ ++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 52 VDVVQMDEDTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 111
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ + +++F L V+C TR+ A S+D +
Sbjct: 112 GLIPILADP---RLFEYRNQGEEEGTEIDTLQFRLQVRC----TRNPNAAK-DSSDPNEL 163
Query: 129 PVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
V + AD+ G DDILI +LR GQE+ L + KG GK+H
Sbjct: 164 YVNHKVYTRHMTWVPLGNQADVFPEGTIRPVHDDILIAQLRPGQEIDLMMHCVKGIGKDH 223
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 224 AKFSPVA 230
>gi|108707637|gb|ABF95432.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein,
expressed [Oryza sativa Japonica Group]
Length = 352
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 23/191 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + LT+++++F + + S+AN+ RR+ IAE PTMAI+ V + N++V++DE ++ R+
Sbjct: 74 VVVNRLTEDDMEFDMIGIDASMANAFRRILIAEVPTMAIEKVLMADNTSVIADEVLSHRL 133
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTR-HVTTADLK-----S 122
GLIPL +D + + D ++ + L V C R V + DL+ S
Sbjct: 134 GLIPLDADPRLFEYISENDVP----TERNTIVYKLHVSCKKGSPRLTVKSGDLEWLPEGS 189
Query: 123 TDARVVPVTSRNRDADMNEYGETD-------------DILIVKLRKGQELRLRAYAKKGF 169
P S ++ + ++ DI I +L GQ + L +A KG
Sbjct: 190 QLPLASPAQSGDKQKTYTSFSQSQKDILEKPLGVKFKDITIARLGPGQAIELEVHAVKGI 249
Query: 170 GKEHAKWNPTA 180
GK HAKW+P A
Sbjct: 250 GKVHAKWSPVA 260
>gi|68069197|ref|XP_676509.1| DNA-directed RNA polymerase I [Plasmodium berghei strain ANKA]
gi|56496241|emb|CAH97452.1| DNA-directed RNA polymerase I, putative [Plasmodium berghei]
Length = 334
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 25/172 (14%)
Query: 22 QVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDR 81
++++ +S+AN+LRR+ I+E PT+AI+ V + N+ V++DE + R+GLIP D D
Sbjct: 63 EIKNLNVSIANALRRIMISEVPTIAIEKVNIFQNTGVIADEILCHRLGLIPFKFD--ADL 120
Query: 82 ILY--------SRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK---STDARVVPV 130
I + + +C C F L VKC + + + S D + P+
Sbjct: 121 INFKDTHEKYNNLNCFC----------FKLHVKCNSINNNKIGNENYQCIYSKDLKWCPL 170
Query: 131 TSRNR-DADMNEYGETDD-ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ + N DD ILI KL GQE+ L + +KG GK HAKW+P
Sbjct: 171 NEEQKIKFESNPPKVVDDNILITKLGNGQEIELICFLEKGIGKTHAKWSPVC 222
>gi|395645094|ref|ZP_10432954.1| DNA-directed RNA polymerase subunit D [Methanofollis liminatans DSM
4140]
gi|395441834|gb|EJG06591.1| DNA-directed RNA polymerase subunit D [Methanofollis liminatans DSM
4140]
Length = 274
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 87/170 (51%), Gaps = 21/170 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ + ++ +F + + AN+LRR I E PT+AI+ +++ NS+VL DE +A R+
Sbjct: 3 IEFARIDSDSARFVLSGATPAFANTLRRAMIGEVPTLAIEDLRIYDNSSVLFDEILAHRL 62
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDF-CSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
GLIP+ +D + R + C+C C CSV FT+ V + V + DL S D
Sbjct: 63 GLIPIKTD--LTRFVKQDRCSCEGAGCPLCSVTFTMSV----EGPGIVYSGDLISDDPET 116
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
PV DDI IVKL +GQ++ L A A G EHAKW
Sbjct: 117 RPV--------------HDDIPIVKLFEGQKVVLEARAVLNTGTEHAKWQ 152
>gi|363752191|ref|XP_003646312.1| hypothetical protein Ecym_4450 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889947|gb|AET39495.1| hypothetical protein Ecym_4450 [Eremothecium cymbalariae
DBVPG#7215]
Length = 334
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 92/184 (50%), Gaps = 18/184 (9%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I+ L D F + + S+AN+ RR+ I+E P++A ++V N++V+ DE +A RI
Sbjct: 42 VQISHLDDREANFDLIHIDASIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHRI 101
Query: 69 GLIPLTSDE----VVDRILYSRDCTCVDFCSECSVEFTLDVKCV---------DDQTRHV 115
GL+PL D VD+ L + F E +V +L+VKC D
Sbjct: 102 GLVPLKVDPDMLTWVDKSLPEAE----RFTDENTVVMSLNVKCTANPDAPKGSTDPKELY 157
Query: 116 TTADLKSTDARVVPVTSRNRDADMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHA 174
A + S D + P + + TD DIL+ KLR GQE+ LR + G G +HA
Sbjct: 158 NNAHIYSRDLKFEPQGKQLDSFAKHPVLPTDPDILLAKLRPGQEISLRVHCILGVGGDHA 217
Query: 175 KWNP 178
K++P
Sbjct: 218 KFSP 221
>gi|148691537|gb|EDL23484.1| RNA polymerase 1-1, isoform CRA_b [Mus musculus]
Length = 323
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + ++ ++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 28 VDVVQMDEDTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 87
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ + +++F L V+C TR+ A S+D +
Sbjct: 88 GLIPILADP---RLFEYRNQGEEEGTEIDTLQFRLQVRC----TRNPNAAK-DSSDPNEL 139
Query: 129 PVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
V + AD+ G DDILI +LR GQE+ L + KG GK+H
Sbjct: 140 YVNHKVYTRHMTWVPLGNQADVFPEGTIRPVHDDILIAQLRPGQEIDLMMHCVKGIGKDH 199
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 200 AKFSPVA 206
>gi|355712707|gb|AES04439.1| polymerase I polypeptide C, 30kDa [Mustela putorius furo]
Length = 305
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + L + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 50 VDVVHLDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 109
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ + +++F L V+C TR+ A S+D +
Sbjct: 110 GLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQVRC----TRNPHAAK-DSSDPNEL 161
Query: 129 PVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
V + AD+ G DDILI +LR GQE+ L + KG GK+H
Sbjct: 162 YVNHKVYTRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 221
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 222 AKFSPVA 228
>gi|218191485|gb|EEC73912.1| hypothetical protein OsI_08749 [Oryza sativa Indica Group]
Length = 332
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 94/191 (49%), Gaps = 23/191 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I+ LT+++++F + + S+AN+ RR+ IAE PTMAI+ V + N++V++DE ++ R+
Sbjct: 72 VEISRLTEDDMEFDMIGIDASIANAFRRILIAELPTMAIEKVLMVDNTSVIADEVLSHRL 131
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTR-HVTTADLK-----S 122
GLIPL +D + D ++ + L V C R V + DL+ S
Sbjct: 132 GLIPLDADPRHFEYMSENDVP----NERNTIVYKLHVSCKKGSPRLTVKSGDLEWLPEGS 187
Query: 123 TDARVVPVTSRNRDADMNEYGETD-------------DILIVKLRKGQELRLRAYAKKGF 169
P SR + + ++ DI I +L GQ + L + KG
Sbjct: 188 RLPLASPAQSRYKQKTYTSFSQSQKDILEKPLGVKFKDITIARLGPGQAIVLEVHGVKGM 247
Query: 170 GKEHAKWNPTA 180
GK HAKW+P A
Sbjct: 248 GKVHAKWSPVA 258
>gi|119226251|ref|NP_033111.2| DNA-directed RNA polymerases I and III subunit RPAC1 [Mus musculus]
gi|341942146|sp|P52432.3|RPAC1_MOUSE RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=DNA-directed RNA polymerase I subunit C; Short=RNA
polymerases I and III subunit AC1; AltName: Full=AC40;
AltName: Full=DNA-directed RNA polymerases I and III 40
kDa polypeptide; Short=RPA40; AltName: Full=RPC40
gi|74205031|dbj|BAE20986.1| unnamed protein product [Mus musculus]
gi|74226711|dbj|BAE27005.1| unnamed protein product [Mus musculus]
gi|148691536|gb|EDL23483.1| RNA polymerase 1-1, isoform CRA_a [Mus musculus]
Length = 346
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + ++ ++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVQMDEDTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ + +++F L V+C TR+ A S+D +
Sbjct: 111 GLIPILADP---RLFEYRNQGEEEGTEIDTLQFRLQVRC----TRNPNAAK-DSSDPNEL 162
Query: 129 PVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
V + AD+ G DDILI +LR GQE+ L + KG GK+H
Sbjct: 163 YVNHKVYTRHMTWVPLGNQADVFPEGTIRPVHDDILIAQLRPGQEIDLMMHCVKGIGKDH 222
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 223 AKFSPVA 229
>gi|326428554|gb|EGD74124.1| RNA polymerase subunit I [Salpingoeca sp. ATCC 50818]
Length = 328
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 12/172 (6%)
Query: 18 NVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDE 77
+++F + + ++AN++RR+ I+E PTMAI+ + NS+VL DE +A RIGLIPL D
Sbjct: 46 DMEFDMIGVDAAIANAVRRILISEVPTMAIEQAYIYHNSSVLPDEMLAHRIGLIPLAVDA 105
Query: 78 VVDRILYSRDCTCVDFCSECSVEFTLDVKCVD---------DQTRHVTTADLKSTDARVV 128
R L + D ++ F LDV+C D+ + + S+D +
Sbjct: 106 RRFRTLEEDNNEMNDL---NTLVFDLDVECKHREGAKAGETDKNKKYINHMVMSSDIKWQ 162
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
P ++ +DI IV+LR GQ + + + KG GK HAKW+P A
Sbjct: 163 PKGNQKDRFKTAICPVHEDIPIVELRPGQRVSMELHCSKGVGKLHAKWSPVA 214
>gi|350586678|ref|XP_003482243.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Sus scrofa]
Length = 346
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ + +++F L V+C TR+ + A S+D +
Sbjct: 111 GLIPIHADP---RLFEYRNLGDEEGTEIDTLQFRLQVRC----TRNPSAAK-DSSDPNEL 162
Query: 129 PVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
V + AD+ G DDILI +LR GQE+ L KG GK+H
Sbjct: 163 YVNHKVYTRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMQCVKGIGKDH 222
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 223 AKFSPVA 229
>gi|393909614|gb|EFO27840.2| hypothetical protein LOAG_00653 [Loa loa]
Length = 684
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 103/199 (51%), Gaps = 21/199 (10%)
Query: 3 YANQPSVHITDLTDEN--VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
Y ++ V I + +++ ++F + E +AN++RR+FIAE PTMAI+ V L N++++
Sbjct: 370 YISKIKVFIINESEDGMALEFDLVGVEAPIANAIRRIFIAELPTMAIEKVYLYQNTSIIP 429
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVE----------FTLDVKCVDD 110
DE ++ R+GL+P+ +D + ++ ++ + +C+ E F + V C +
Sbjct: 430 DEVLSHRLGLLPIKADPRLFKMPLAQVVGIDESGVDCNEEPAGDPERNLIFEIKVTCSRN 489
Query: 111 QTRHVTTADLK---------STDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 161
T + K S + +P+ ++ DDIL+ +LR GQE+
Sbjct: 490 SNALKTATNPKEIYENAFVYSNAFKWIPIGDQSSSLPYPPAMVHDDILVAQLRPGQEIEA 549
Query: 162 RAYAKKGFGKEHAKWNPTA 180
R + KG G++HAK++P A
Sbjct: 550 RCHCLKGLGRDHAKFSPVA 568
>gi|268556380|ref|XP_002636179.1| Hypothetical protein CBG01436 [Caenorhabditis briggsae]
Length = 367
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 103/201 (51%), Gaps = 23/201 (11%)
Query: 3 YANQPSV-HITDLTDE-NVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
Y +Q V + + TD+ ++F + E +AN+LRR+ IAE PTMA++ + L N++V+
Sbjct: 51 YCSQIKVAMVNESTDKMTLEFDITRIEAPIANALRRILIAEVPTMALEKIYLYQNTSVIQ 110
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVE----------FTLDVKCVDD 110
DE + R+GL+PL D + + + +C E F ++V C +
Sbjct: 111 DEVLCHRLGLLPLRVDPRGFQFPTEKVVGINEKGVDCEEEPTGDPARHLIFKINVTCTKN 170
Query: 111 QTRHVTTADLK------STDARV---VPVTSRNRDADMNEYGE--TDDILIVKLRKGQEL 159
+ T D K S +R VP+ ++ + D + +DDIL+ KLR GQE+
Sbjct: 171 RNAVPTATDPKQLYHNSSVYSRAFEWVPIGKQSGNYDKKNVPKMVSDDILVAKLRPGQEI 230
Query: 160 RLRAYAKKGFGKEHAKWNPTA 180
+A KG G++HAK++P A
Sbjct: 231 EASCHAVKGIGRDHAKFSPVA 251
>gi|344232398|gb|EGV64277.1| hypothetical protein CANTEDRAFT_113900 [Candida tenuis ATCC 10573]
gi|344232399|gb|EGV64278.1| hypothetical protein CANTEDRAFT_113900 [Candida tenuis ATCC 10573]
Length = 336
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 98/197 (49%), Gaps = 32/197 (16%)
Query: 5 NQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFI 64
N V I+ L + F + + S+AN+LRR+ I+E P++A + + + N++V+ DE +
Sbjct: 40 NSLEVKISKLDERESNFDLVHIDTSIANALRRIMISEVPSVAAETIYVFNNTSVIQDEVL 99
Query: 65 ASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDD-------------- 110
A RIGLIPL +D + + + + E ++ TLDV C +
Sbjct: 100 AHRIGLIPLKADPDLLTWVDTAQDEKSKYTDENTIVLTLDVTCTHNPNAPKGSTNPKELY 159
Query: 111 QTRHVTTADLK-STDARVV------PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 163
+ HV DLK + V PVT+ AD N ILI KLR GQE+ LRA
Sbjct: 160 RNSHVYAKDLKFEPQGKQVELFKGNPVTA----ADPN-------ILIAKLRPGQEISLRA 208
Query: 164 YAKKGFGKEHAKWNPTA 180
+ G G +HAK++P A
Sbjct: 209 HCILGVGSDHAKFSPVA 225
>gi|357121301|ref|XP_003562359.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
rpac1-like [Brachypodium distachyon]
Length = 360
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 98/201 (48%), Gaps = 33/201 (16%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ N + I LT+++++F + + S+AN+ RR+ IAE PTMAI+ V + N++V++DE
Sbjct: 58 FCNSFKIKINRLTEDDMEFDMIGVDASIANAFRRILIAEVPTMAIEKVFMVDNTSVIADE 117
Query: 63 FIASRIGLIPLTSD-----EVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTR-HVT 116
++ R+GLIPL +D + D + R+ ++ + L V C R V
Sbjct: 118 VLSHRLGLIPLDADPRLFDHISDDVPNERN----------TIVYKLHVSCEKGSQRLTVK 167
Query: 117 TADLK----STDARVVPVTSRNRDADMNEYGETD-------------DILIVKLRKGQEL 159
+ L+ + + + +G++ DI I +L GQ +
Sbjct: 168 SGQLEWLPEGSQLLMASAAQGEKQKTYTSFGQSQKNISGRSIGVKYKDITIARLGPGQAI 227
Query: 160 RLRAYAKKGFGKEHAKWNPTA 180
L A+A KG GK HAKW+P A
Sbjct: 228 ELEAHAVKGVGKVHAKWSPVA 248
>gi|225707230|gb|ACO09461.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Osmerus mordax]
Length = 351
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I ++ + ++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 52 IDIVEMDETTMEFDMVGIDAAIANAFRRIMLAEVPTMAVEKVYIYNNTSIIQDEILAHRL 111
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSEC----SVEFTLDVKCVDDQTRHVTTADLK--- 121
GLIP+ +D R+ R+ E +++ L +KC + ++D +
Sbjct: 112 GLIPIKADP---RLFEYRNIGEEGGEEEGTEIDTIQLQLKIKCTRNPRAPKDSSDPRELY 168
Query: 122 ------STDARVVPVTSR-NRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
S D + VP+ ++ + AD N DILI +LR GQEL + KG GK+HA
Sbjct: 169 LNHMVYSKDMKWVPIGNQADVFADANIGPVHGDILIAQLRPGQELDVVMSCVKGIGKDHA 228
Query: 175 KWNPTA 180
K++P A
Sbjct: 229 KFSPVA 234
>gi|57094492|ref|XP_532147.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 1 [Canis lupus familiaris]
Length = 346
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 98/185 (52%), Gaps = 19/185 (10%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV---------DDQTRHVTTAD 119
GLIP+ +D R+ R+ + +++F L V+C D
Sbjct: 111 GLIPIHADP---RLFEYRNQGDDEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHK 167
Query: 120 LKSTDARVVPVTSRNRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
+ S VP+ ++ AD+ G DDILI +LR GQE+ L + KG GK+HAK
Sbjct: 168 VYSRHMTWVPLGNQ---ADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAK 224
Query: 176 WNPTA 180
++P A
Sbjct: 225 FSPVA 229
>gi|417409912|gb|JAA51445.1| Putative rna polymerase i and iii subunit, partial [Desmodus
rotundus]
Length = 347
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 96/190 (50%), Gaps = 42/190 (22%)
Query: 16 DEN-VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT 74
DEN ++F + + ++AN+ RRV +AE PTMA++ V + N++++ DE +A R+GLIP+
Sbjct: 58 DENTLEFDMVGIDAAIANAFRRVLLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIH 117
Query: 75 SDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQ-------------------TRHV 115
+D R+ R+ + +++F L V+C + TRH+
Sbjct: 118 ADP---RLFEYRNQGDEEGTEIDTLQFRLQVRCTRNSHAAKDSSDPNELYVNHKVYTRHM 174
Query: 116 TTADLKST-----DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFG 170
T L + D + PV DDILI +LR GQE+ L + KG G
Sbjct: 175 TWVPLGNQADLFPDGTIRPV--------------HDDILIAQLRPGQEIDLLMHCVKGIG 220
Query: 171 KEHAKWNPTA 180
K+HAK++P A
Sbjct: 221 KDHAKFSPVA 230
>gi|335774431|gb|AEH58393.1| DNA-directed RNA polymerases I and III subuni RPAC1-like protein,
partial [Equus caballus]
Length = 267
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ + +++F L V+C TR+ A S+D +
Sbjct: 111 GLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQVRC----TRNPHAAK-DSSDPSEL 162
Query: 129 PVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
V + AD+ G DDILI +LR GQE+ L + KG GK+H
Sbjct: 163 YVNHKVYTRHMIWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 222
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 223 AKFSPVA 229
>gi|15897038|ref|NP_341643.1| DNA-directed RNA polymerase subunit D (rpoD) [Sulfolobus
solfataricus P2]
gi|284173382|ref|ZP_06387351.1| DNA-directed RNA polymerase, subunit D (rpoD) [Sulfolobus
solfataricus 98/2]
gi|384433538|ref|YP_005642896.1| RNA polymerase insert [Sulfolobus solfataricus 98/2]
gi|2500627|sp|P95989.1|RPOD_SULSO RecName: Full=DNA-directed RNA polymerase subunit D
gi|167013264|pdb|2PA8|D Chain D, X-Ray Crystal Structure Of The DL SUBCOMPLEX OF THE
SULFOLOBUS Solfataricus Rna Polymerase
gi|167744884|pdb|2PMZ|D Chain D, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744895|pdb|2PMZ|S Chain S, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782146|pdb|3HKZ|D Chain D, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|239782159|pdb|3HKZ|O Chain O, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|1707823|emb|CAA69531.1| DNA-directed RNA polymerase subunit D [Sulfolobus solfataricus P2]
gi|13813203|gb|AAK40433.1| DNA-directed RNA polymerase, subunit D (rpoD) [Sulfolobus
solfataricus P2]
gi|261601692|gb|ACX91295.1| RNA polymerase insert [Sulfolobus solfataricus 98/2]
Length = 265
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 16/174 (9%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
S+++ D + E L N++RR + P MA+D V N++ L DE +A R
Sbjct: 2 SINLLHKDDTRIDLVFEGYPLEFVNAIRRASMLYVPIMAVDDVYFIENNSPLYDEILAHR 61
Query: 68 IGLIPLTSDEVVDRILYSRDCT-CVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
+ LIP S+E +D + +C C + C +C + ++ + ++ R + + D+KS D
Sbjct: 62 LALIPFMSEEALDTYRWPEECIECTENCEKCYTKIYIEAE-APNEPRMIYSKDIKSEDPS 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
VVP++ DI IV L Q++ L A + G+GKEHAK+ P +
Sbjct: 121 VVPISG--------------DIPIVLLGTNQKISLEARLRLGYGKEHAKFIPVS 160
>gi|323304520|gb|EGA58286.1| Rpb3p [Saccharomyces cerevisiae FostersB]
Length = 259
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 68/118 (57%), Gaps = 5/118 (4%)
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS 122
+ + +GLIPL S ++ +++ YSRDC C D C +CSV TL + T +V + DL
Sbjct: 3 LLHTDLGLIPLQSMDI-EQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDL-- 59
Query: 123 TDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V + RN + + E + +LI KLRKGQEL+L AKKG KEHAKW P A
Sbjct: 60 --VIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAA 115
>gi|296198261|ref|XP_002746623.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Callithrix jacchus]
Length = 346
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 101/185 (54%), Gaps = 19/185 (10%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + S+AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDASIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTAD--------- 119
GLIP+ +D R+ R+ + +++F L V+C + ++D
Sbjct: 111 GLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYMNHK 167
Query: 120 LKSTDARVVPVTSRNRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
+ + +P+ ++ AD+ G DDILI +LR GQE+ L + KG GK+HAK
Sbjct: 168 VYTRHMTWIPLGNQ---ADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAK 224
Query: 176 WNPTA 180
++P A
Sbjct: 225 FSPVA 229
>gi|332234165|ref|XP_003266281.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Nomascus leucogenys]
Length = 346
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ + +++F L V+C TR+ A S+D +
Sbjct: 111 GLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQVRC----TRNPHAAK-DSSDPNEL 162
Query: 129 PVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
V + AD+ G DDILI +LR GQE+ L + KG GK+H
Sbjct: 163 YVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 222
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 223 AKFSPVA 229
>gi|417409648|gb|JAA51322.1| Putative rna polymerase i and iii subunit, partial [Desmodus
rotundus]
Length = 316
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 96/190 (50%), Gaps = 42/190 (22%)
Query: 16 DEN-VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT 74
DEN ++F + + ++AN+ RRV +AE PTMA++ V + N++++ DE +A R+GLIP+
Sbjct: 58 DENTLEFDMVGIDAAIANAFRRVLLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIH 117
Query: 75 SDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQ-------------------TRHV 115
+D R+ R+ + +++F L V+C + TRH+
Sbjct: 118 ADP---RLFEYRNQGDEEGTEIDTLQFRLQVRCTRNSHAAKDSSDPNELYVNHKVYTRHM 174
Query: 116 TTADLKST-----DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFG 170
T L + D + PV DDILI +LR GQE+ L + KG G
Sbjct: 175 TWVPLGNQADLFPDGTIRPV--------------HDDILIAQLRPGQEIDLLMHCVKGIG 220
Query: 171 KEHAKWNPTA 180
K+HAK++P A
Sbjct: 221 KDHAKFSPVA 230
>gi|301626012|ref|XP_002942192.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Xenopus (Silurana) tropicalis]
Length = 347
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 100/194 (51%), Gaps = 24/194 (12%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ N + I + + ++F + + S+AN+ RR+ +AE PTMA++ V + N++++ DE
Sbjct: 45 FENNFRIDIVKMEGDTLEFDMVGIDASIANAFRRILLAEVPTMAVEKVYVYNNTSIIQDE 104
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV---------DDQTR 113
+A R+GLIP+ D R+ R + +++F L+VKC D
Sbjct: 105 ILAHRLGLIPIRVDP---RLFEYRSAEEGEGTEIDTLQFELNVKCTRNPRASKDCSDPNE 161
Query: 114 HVTTADLKSTDARVVPVTSRNRDADMNEYGETD-------DILIVKLRKGQELRLRAYAK 166
+ ++ + +P + +D+ + ETD DILI +LR GQE+ + +
Sbjct: 162 LYLNHKVYTSHMKWLP---QGNQSDL--FPETDPPRPVHGDILIAQLRPGQEISVIMHCV 216
Query: 167 KGFGKEHAKWNPTA 180
KG GK+HAK++P A
Sbjct: 217 KGIGKDHAKFSPVA 230
>gi|431838337|gb|ELK00269.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Pteropus
alecto]
Length = 346
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ + +++F L V+C TR+ A S+D +
Sbjct: 111 GLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQVRC----TRNPHAAK-DSSDPNEL 162
Query: 129 PVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
V + AD+ G DDILI +LR GQE+ L + KG GK+H
Sbjct: 163 YVNHKVYTRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 222
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 223 AKFSPVA 229
>gi|330840939|ref|XP_003292464.1| RNA polymerase III subunit [Dictyostelium purpureum]
gi|325077271|gb|EGC30994.1| RNA polymerase III subunit [Dictyostelium purpureum]
Length = 338
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 9/162 (5%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD 80
F++ + +AN++RR+ I+E PTMAI+ V + N+++L DE +A R+GLIP+ VD
Sbjct: 79 FEMMGVDAPIANAIRRILISEVPTMAIEKVYIINNTSILQDEVLAHRLGLIPIK----VD 134
Query: 81 RILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVP----VTSRNRD 136
++ ++ +E ++ F L VKC D + + S VP + +
Sbjct: 135 PRKFNFHLPNKEYTAEDTLIFKLKVKCERDANGKIINDTVLSKHLEWVPHDDQIAMFPNE 194
Query: 137 ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
D E DDI I++LR GQ + ++ Y +K G+EH KW+P
Sbjct: 195 EDHPRPVE-DDIPIMRLRPGQVIDVQLYCEKNIGREHIKWSP 235
>gi|42560246|ref|NP_976035.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Homo sapiens]
gi|332824144|ref|XP_001136605.2| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 1 [Pan troglodytes]
gi|397526795|ref|XP_003833302.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Pan paniscus]
gi|426353284|ref|XP_004044127.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Gorilla gorilla gorilla]
gi|3914807|sp|O15160.1|RPAC1_HUMAN RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=DNA-directed RNA polymerase I subunit C; Short=RNA
polymerases I and III subunit AC1; AltName: Full=AC40;
AltName: Full=DNA-directed RNA polymerases I and III 40
kDa polypeptide; Short=RPA40; AltName: Full=RPA39;
AltName: Full=RPC40
gi|2266929|gb|AAC14354.1| RNA polymerase I subunit hRPA39 [Homo sapiens]
gi|14250788|gb|AAH08863.1| Polymerase (RNA) I polypeptide C, 30kDa [Homo sapiens]
gi|119624610|gb|EAX04205.1| polymerase (RNA) I polypeptide C, 30kDa, isoform CRA_b [Homo
sapiens]
gi|261858766|dbj|BAI45905.1| polymerase (RNA) I polypeptide C, 30kDa [synthetic construct]
gi|312152392|gb|ADQ32708.1| polymerase (RNA) I polypeptide C, 30kDa [synthetic construct]
gi|410212776|gb|JAA03607.1| polymerase (RNA) I polypeptide C, 30kDa [Pan troglodytes]
gi|410248096|gb|JAA12015.1| polymerase (RNA) I polypeptide C, 30kDa [Pan troglodytes]
gi|410296802|gb|JAA27001.1| polymerase (RNA) I polypeptide C, 30kDa [Pan troglodytes]
gi|410337835|gb|JAA37864.1| polymerase (RNA) I polypeptide C, 30kDa [Pan troglodytes]
Length = 346
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ + +++F L V+C TR+ A S+D +
Sbjct: 111 GLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQVRC----TRNPHAAK-DSSDPNEL 162
Query: 129 PVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
V + AD+ G DDILI +LR GQE+ L + KG GK+H
Sbjct: 163 YVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 222
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 223 AKFSPVA 229
>gi|14198113|gb|AAH08118.1| POLR1C protein, partial [Homo sapiens]
Length = 338
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 43 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 102
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ + +++F L V+C TR+ A S+D +
Sbjct: 103 GLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQVRC----TRNPHAAK-DSSDPNEL 154
Query: 129 PVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
V + AD+ G DDILI +LR GQE+ L + KG GK+H
Sbjct: 155 YVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 214
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 215 AKFSPVA 221
>gi|158293560|ref|XP_314897.4| AGAP008771-PA [Anopheles gambiae str. PEST]
gi|157016767|gb|EAA10097.5| AGAP008771-PA [Anopheles gambiae str. PEST]
Length = 261
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 92/177 (51%), Gaps = 16/177 (9%)
Query: 16 DEN-VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT 74
DEN ++F + ++AN RR+ ++E P+MAI+ V + N++++ DE +A R+GLIPL
Sbjct: 14 DENELEFDMIGVSCAIANVFRRLMLSEVPSMAIEKVHIYNNTSIIQDEVLAHRLGLIPLR 73
Query: 75 SDEVVDRILYSRDCTCVDFCSEC-SVEFTLDVKC---------VDDQTRHVTTADLKSTD 124
+D ++ D S ++EF L VKC V + + S
Sbjct: 74 ADPR----MFEYKANETDPPSALDTLEFELKVKCTRKNKDSTEVTNNENMYKNHSIYSGQ 129
Query: 125 ARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ VP+ ++ G DDILI K+R G E ++ +A KG GK+HAK++P A
Sbjct: 130 IKWVPIGNQATIYTEAAVGPIDDDILISKMRPGHEFDIKLFAVKGVGKDHAKFSPVA 186
>gi|449662625|ref|XP_002166070.2| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Hydra magnipapillata]
Length = 354
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 96/192 (50%), Gaps = 22/192 (11%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ + L ++F + + S+AN+ RR+ IAE PTMAI+ V + N+T++ DE +A R+
Sbjct: 49 IDVIKLNQNEMEFDMIGIDASIANAFRRILIAEVPTMAIEKVFIFNNTTIVQDEILAHRL 108
Query: 69 GLIPLTSDEVV----------DRILYSRDCTCVDFCSECSVEFTLDVKCVDD--QTRHVT 116
GLIP+ +D + L + VD + F L +KC + + T
Sbjct: 109 GLIPILADPREFNFPPAKLEDESKLTDEERLAVD--EHHHLVFELKIKCSKNPKASSDAT 166
Query: 117 TADLKSTDARV-------VPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRAYAKKG 168
D+ + +V +P+ + N DDILI KLR GQEL +R + KG
Sbjct: 167 DPDVLYLNNKVMTKHMKWIPIGRQAEKFSTNIVRPVFDDILIAKLRPGQELDIRMHCVKG 226
Query: 169 FGKEHAKWNPTA 180
GK+HAK++P A
Sbjct: 227 IGKDHAKFSPVA 238
>gi|41056007|ref|NP_956860.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Danio rerio]
gi|34193909|gb|AAH56581.1| Polymerase (RNA) I polypeptide C [Danio rerio]
Length = 347
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%), Gaps = 14/177 (7%)
Query: 15 TDEN-VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPL 73
+DEN ++F + + ++AN+ RR+ +AE PTMAI+ V + N++++ DE +A R+GL+P+
Sbjct: 57 SDENTLEFDMIGIDAAIANAFRRILLAEVPTMAIEKVFIYNNTSIIQDEILAHRLGLVPI 116
Query: 74 TSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK---------STD 124
+D R+ R+ + +++ L VKC + ++D K S D
Sbjct: 117 KADP---RLFEYRNSEDQEGTEIDTIQLQLKVKCTRNPRAPKDSSDPKELYLNHMIYSGD 173
Query: 125 ARVVPVTSR-NRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ +P+ ++ + AD DIL+ ++R GQEL + + KG GK+HAK++P A
Sbjct: 174 IKWLPIGNQADVFADAKIGPVHGDILLAQVRPGQELDIVMHCVKGIGKDHAKFSPVA 230
>gi|395832416|ref|XP_003789267.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Otolemur garnettii]
Length = 346
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 98/181 (54%), Gaps = 24/181 (13%)
Query: 16 DEN-VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT 74
DEN ++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+GLIP+
Sbjct: 57 DENTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIH 116
Query: 75 SDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSR- 133
+D R+ R+ + +++F L V+C TR+ A S+D + V +
Sbjct: 117 ADP---RLFEYRNQGDEEGTEIDTLQFRLQVRC----TRNPHAAK-DSSDPNELYVNHKV 168
Query: 134 ----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
AD+ G DDILI +LR GQE+ L + KG GK+HAK++P
Sbjct: 169 YTRHMMWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPV 228
Query: 180 A 180
A
Sbjct: 229 A 229
>gi|444725444|gb|ELW66008.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Tupaia
chinensis]
Length = 346
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ + +++F L V+C TR+ A S+D +
Sbjct: 111 GLIPIHADP---RLFEYRNQEDEEGTEIDTLQFRLQVRC----TRNPHAAK-DSSDPNEL 162
Query: 129 PVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
V + AD+ G DDILI +LR GQE+ L + KG GK+H
Sbjct: 163 YVNHKVYTRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 222
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 223 AKFSPVA 229
>gi|88604132|ref|YP_504310.1| DNA-directed RNA polymerase subunit D [Methanospirillum hungatei
JF-1]
gi|88189594|gb|ABD42591.1| DNA-directed RNA polymerase, subunit D [Methanospirillum hungatei
JF-1]
Length = 272
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 21/172 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ + L + F + D ++ AN+LRR ++E T AI+ V++ N++ L DE + R+
Sbjct: 3 IEFSSLEENAASFVLSDAPIAFANALRRAMVSEVMTFAIEDVKIYDNTSALFDEILTHRL 62
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDF-CSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
GLIPL +D D + C+C C C+V T+ V + V + DL S DA V
Sbjct: 63 GLIPLVTDP--DSFVPRSQCSCNGAGCPRCTVTLTMSV----EGPGVVMSGDLISQDAVV 116
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
P D+I IVKL K Q++ + A A G EHAKW+PT
Sbjct: 117 RPA--------------EDNIPIVKLEKNQKVVIEAQAYMERGMEHAKWSPT 154
>gi|448510710|ref|XP_003866410.1| Rpc40 RNA polymerase [Candida orthopsilosis Co 90-125]
gi|380350748|emb|CCG20970.1| Rpc40 RNA polymerase [Candida orthopsilosis Co 90-125]
Length = 336
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 98/186 (52%), Gaps = 18/186 (9%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ IT++++ F + + S+AN+ RR+ IAE P++A++ V N++V+ DE +A RI
Sbjct: 44 IKITNVSERVANFDLVHIDTSIANAFRRIMIAEVPSVAVETVYSFMNTSVIQDEVLAHRI 103
Query: 69 GLIPLTSDE----VVDRILYSRDCTCVDFCSECSVEFTLDVKCVD---------DQTRHV 115
GLIPL D VD+ + D + + ++ +LDV C + +
Sbjct: 104 GLIPLKVDPDSLTWVDKTVDEND----RYTEDNTIVLSLDVTCTKNPHAPKNSTNPSELY 159
Query: 116 TTADLKSTDARVVPVTSRNRDADMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHA 174
+++ + D + P S+ N TD +IL+ KLR GQE+ LRA+ G G +HA
Sbjct: 160 RNSNVYAKDLKFEPQGSQLEKYKDNPVVPTDPNILLAKLRPGQEISLRAHCILGIGADHA 219
Query: 175 KWNPTA 180
K++P A
Sbjct: 220 KFSPVA 225
>gi|189239160|ref|XP_971966.2| PREDICTED: similar to CG3756 CG3756-PA [Tribolium castaneum]
Length = 338
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%), Gaps = 13/177 (7%)
Query: 15 TDEN-VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPL 73
++EN ++F + +AN+ RR+ +++ PTMAI+ V + N++++ DE +A R+GLIPL
Sbjct: 50 SEENELEFDLIGIHPFLANTFRRLMLSDVPTMAIEKVHILNNTSIIQDEVLAHRLGLIPL 109
Query: 74 TSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVD--DQTRHVTTAD-------LKSTD 124
+D + + R + + + ++EF L +KC + D ++ A+ + S
Sbjct: 110 KADPRLFEMKTDRKSSTAEGTEQDTLEFALKIKCTNNKDSSKDSLRAEDMYKNNNVYSKH 169
Query: 125 ARVVPV-TSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ VP+ + R +D+ DILI K+R G EL L+ A K G++HAK++P A
Sbjct: 170 IKWVPIGKQKERFSDVGPIHP--DILIAKMRPGHELDLKLLAVKSNGRDHAKFSPVA 224
>gi|222445013|ref|ZP_03607528.1| hypothetical protein METSMIALI_00629 [Methanobrevibacter smithii
DSM 2375]
gi|222434578|gb|EEE41743.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2375]
Length = 274
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 91/173 (52%), Gaps = 24/173 (13%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ + TD+ + F V D E+ N++RR + P +AI+ V + N + + +E +A R+
Sbjct: 3 IEVKSQTDDEIVFIVRDAEVPFINAIRRCAMVNVPKIAIEDVNIMRNDSAMFNEVLAHRL 62
Query: 69 GLIPLTS--DEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
GL PL S D + L D D+ SV F+L ++ + V + DL S+D++
Sbjct: 63 GLTPLVSNMDAIEGLPLPGDD----DYEENNSVMFSLK----EEGPKVVYSKDLISSDSK 114
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
+ PV D I +VKL++G++L + A AK G+GKEHAKW PT
Sbjct: 115 IKPV--------------YDTIPLVKLKEGEKLNIEAVAKVGYGKEHAKWMPT 153
>gi|402867078|ref|XP_003897695.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I and
III subunit RPAC1 [Papio anubis]
Length = 346
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 100/193 (51%), Gaps = 23/193 (11%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ N V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE
Sbjct: 45 FENNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDE 104
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS 122
+A R+GLIP+ +D R+ R+ D +++F L V+C TR+ A S
Sbjct: 105 ILAHRLGLIPIHADP---RLFEYRNQGDEDGTEIDTLQFRLQVRC----TRNPHAAK-DS 156
Query: 123 TDARVVPVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKK 167
+D + V + AD+ G DDILI +LR GQE+ L + K
Sbjct: 157 SDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVK 216
Query: 168 GFGKEHAKWNPTA 180
G G +HAK +P A
Sbjct: 217 GIGNDHAKISPVA 229
>gi|444321150|ref|XP_004181231.1| hypothetical protein TBLA_0F01700 [Tetrapisispora blattae CBS 6284]
gi|387514275|emb|CCH61712.1| hypothetical protein TBLA_0F01700 [Tetrapisispora blattae CBS 6284]
Length = 333
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 97/191 (50%), Gaps = 28/191 (14%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I++L + + F + + + S+AN+ RR+ +AE P +A + V N++V+ DE +A RI
Sbjct: 42 IKISNLDERDATFDLINIDTSIANAFRRIMMAEVPAVAAEHVYFLNNTSVIQDEVLAHRI 101
Query: 69 GLIPLTSDE----VVDRILYSRDCTCVDFCSECSVEFTLDVKCV--DDQTRHVTTADLKS 122
GL+PL D VD+ L + F E ++ +L+VKC D + T +
Sbjct: 102 GLVPLKVDPDMLTWVDQTLPEEE----RFTDENTIVLSLNVKCTKNDKAPKDCTDPKILY 157
Query: 123 TDARVVPVTSRNRDADMNEYGE------------TD-DILIVKLRKGQELRLRAYAKKGF 169
+A V RD G+ TD DIL+ KLR GQE+ LRA+ G
Sbjct: 158 NNAHVYA-----RDLKFEPQGKQVETFANCPVVPTDPDILLAKLRPGQEISLRAHCILGI 212
Query: 170 GKEHAKWNPTA 180
G +HAK++P A
Sbjct: 213 GSDHAKFSPVA 223
>gi|224061238|ref|XP_002300385.1| predicted protein [Populus trichocarpa]
gi|222847643|gb|EEE85190.1| predicted protein [Populus trichocarpa]
Length = 390
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 94/189 (49%), Gaps = 18/189 (9%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ + L + ++F + + +VAN+ RR+ I+E PTMAI+ V + N++V+ DE +A R+
Sbjct: 89 IKVIALDKDKMEFDMIGIDAAVANAFRRILISEVPTMAIEKVFIANNTSVIQDEVLAHRL 148
Query: 69 GLIPLTSDEVVDRILYSRD-------------CTCVDFCSECSVEFTLDVKCVDDQTRHV 115
GLIP+ D + L + D C CSV ++ ++K + + +
Sbjct: 149 GLIPIKVDPRLFEYLSANDTPNEKNTIVLKLHARCNRGQPRCSV-YSQELKWLPNGSEFA 207
Query: 116 TTADLKSTDARVVPVTSRNRDA----DMNEYGETDDILIVKLRKGQELRLRAYAKKGFGK 171
++ + S +D+ N +DI++ KL GQE+ L A+A KG GK
Sbjct: 208 KESEKPDSKPSTYTSFSCGQDSLPEFAGNPISTVEDIILAKLGPGQEIELEAHAVKGMGK 267
Query: 172 EHAKWNPTA 180
HAKW+P
Sbjct: 268 THAKWSPVG 276
>gi|355570776|ref|ZP_09042046.1| DNA-directed RNA polymerase subunit D [Methanolinea tarda NOBI-1]
gi|354826058|gb|EHF10274.1| DNA-directed RNA polymerase subunit D [Methanolinea tarda NOBI-1]
Length = 281
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 84/172 (48%), Gaps = 21/172 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I + D +F + + AN+ RR I E PT+AI+ V++ N++ L DE +A R+
Sbjct: 3 IEILRMDDSQARFCLSGPSQAFANAFRRAMIGEVPTLAIEDVRIYDNTSALFDEMLAHRL 62
Query: 69 GLIPLTSDEVVDRILYSRDCTC-VDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
GLIP+ ++ + + C+C + C C V FTL V + V + DL D R
Sbjct: 63 GLIPIKTEPGL--YVPQDKCSCGGEGCDRCGVAFTLSV----EGPGMVYSRDLIPQDPRA 116
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
VP D I IVKL K Q++ L A A G+ HAKW PT
Sbjct: 117 VPA--------------VDTIPIVKLGKDQKVVLEARAVLNCGRVHAKWQPT 154
>gi|3335138|gb|AAC39892.1| RNA polymerase I 40kD subunit [Homo sapiens]
gi|119624609|gb|EAX04204.1| polymerase (RNA) I polypeptide C, 30kDa, isoform CRA_a [Homo
sapiens]
Length = 342
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ + +++F L V+C TR+ A S+D +
Sbjct: 111 GLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQVRC----TRNPHAAK-DSSDPNEL 162
Query: 129 PVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
V + AD+ G DDILI +LR GQE+ L + KG GK+H
Sbjct: 163 YVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 222
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 223 AKFSPVA 229
>gi|354492493|ref|XP_003508382.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cricetulus griseus]
Length = 302
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 99/179 (55%), Gaps = 20/179 (11%)
Query: 16 DEN-VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT 74
DEN ++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+GLIP+
Sbjct: 13 DENTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIL 72
Query: 75 SDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTAD---------LKSTDA 125
+D R+ R+ + +++F L V+C + ++D + +
Sbjct: 73 ADP---RLFEYRNPGEEEGTEIDTLQFRLQVRCTKNPNAAKDSSDPNELYVNHKVYTRHM 129
Query: 126 RVVPVTSRNRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
VP+ ++ AD+ G DDILI +LR GQE+ L + KG GK+HAK++P A
Sbjct: 130 TWVPLGNQ---ADVFPEGTIRPVHDDILIAQLRPGQEIDLVMHCVKGIGKDHAKFSPVA 185
>gi|148643488|ref|YP_001274001.1| DNA-directed RNA polymerase subunit D [Methanobrevibacter smithii
ATCC 35061]
gi|261350417|ref|ZP_05975834.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2374]
gi|166229318|sp|A5UN55.1|RPOD_METS3 RecName: Full=DNA-directed RNA polymerase subunit D
gi|148552505|gb|ABQ87633.1| DNA-directed RNA polymerase, subunit D, RpoD [Methanobrevibacter
smithii ATCC 35061]
gi|288861200|gb|EFC93498.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2374]
Length = 274
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 91/173 (52%), Gaps = 24/173 (13%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ + TD+ + F V D E+ N++RR + P +AI+ V + N + + +E +A R+
Sbjct: 3 IEVKSQTDDEIVFIVRDAEVPFINAIRRCAMVNVPKIAIEDVNIMRNDSAMFNEVLAHRL 62
Query: 69 GLIPLTS--DEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
GL PL S D + L D D+ SV F+L ++ + V + DL S+D++
Sbjct: 63 GLTPLVSNMDAIEGLPLPGDD----DYEENNSVMFSLK----EEGPKVVYSKDLISSDSK 114
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
+ PV D I +VKL++G++L + A AK G+GKEHAKW PT
Sbjct: 115 IKPV--------------YDTIPLVKLKEGEKLNIEAVAKVGYGKEHAKWMPT 153
>gi|25155095|ref|NP_504166.2| Protein RPAC-40 [Caenorhabditis elegans]
gi|351060931|emb|CCD68663.1| Protein RPAC-40 [Caenorhabditis elegans]
Length = 366
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 23/201 (11%)
Query: 3 YANQPSVHITDLTDEN--VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
Y +Q V + + +D+ ++F + E +AN+LRRV IAE PTMA++ + L N++V+
Sbjct: 50 YCDQIQVAMVNESDDGMTLEFDITRIEAPIANALRRVLIAEVPTMALEKIYLYQNTSVIQ 109
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVE----------FTLDVKCVDD 110
DE + R+GL+PL D + + + +C E F ++V C +
Sbjct: 110 DEVLCHRLGLLPLRVDPRGFQFPKEKVVGINEKGVDCDEEPEGDPAKNLIFKINVSCTKN 169
Query: 111 QTRHVTTADLK------STDARV---VPVTSRNRDADMNEYGE--TDDILIVKLRKGQEL 159
+ T D K S +R VP+ + + +DDIL+ KLR GQE+
Sbjct: 170 RNAVPTATDPKQLYHNSSVYSRAFEWVPIADQKTQFTEEAHPRMVSDDILVAKLRPGQEI 229
Query: 160 RLRAYAKKGFGKEHAKWNPTA 180
+A KG G++HAK++P A
Sbjct: 230 EASCHAVKGIGRDHAKFSPVA 250
>gi|332824146|ref|XP_003311364.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 2 [Pan troglodytes]
Length = 342
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ + +++F L V+C TR+ A S+D +
Sbjct: 111 GLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQVRC----TRNPHAAK-DSSDPNEL 162
Query: 129 PVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
V + AD+ G DDILI +LR GQE+ L + KG GK+H
Sbjct: 163 YVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 222
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 223 AKFSPVA 229
>gi|149069364|gb|EDM18805.1| RNA polymerase 1-1, isoform CRA_b [Rattus norvegicus]
Length = 291
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 98/182 (53%), Gaps = 23/182 (12%)
Query: 14 LTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPL 73
+ + ++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+GLIP+
Sbjct: 1 MDESTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPI 60
Query: 74 TSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSR 133
+D R+ R+ + +++F L V+C TR+ + A S+D + V +
Sbjct: 61 LADP---RLFEYRNPGEEEGTEIDTLQFRLQVRC----TRNPSAAK-DSSDPNELYVNHK 112
Query: 134 -----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
AD+ G DDILI +LR GQE+ L + KG GK+HAK++P
Sbjct: 113 VYTRHMTWVPLGNQADVFPEGTVRPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSP 172
Query: 179 TA 180
A
Sbjct: 173 VA 174
>gi|45187904|ref|NP_984127.1| ADR031Cp [Ashbya gossypii ATCC 10895]
gi|44982688|gb|AAS51951.1| ADR031Cp [Ashbya gossypii ATCC 10895]
gi|374107343|gb|AEY96251.1| FADR031Cp [Ashbya gossypii FDAG1]
Length = 364
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 94/194 (48%), Gaps = 34/194 (17%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I L + F + + S+AN+ RR+ I+E P++A ++V N++V+ DE +A RI
Sbjct: 72 VQIKSLDEREANFDLLRVDTSIANAFRRIMISEVPSVAPEYVYFFNNTSVIQDEVLAHRI 131
Query: 69 GLIPLTSDE----VVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTD 124
GL+PL D VD+ L + F E +V +L+VKC H A STD
Sbjct: 132 GLVPLKVDPDMLTWVDKSLPEAE----RFTDENTVVLSLNVKCT-----HNPDAPKGSTD 182
Query: 125 ARVVPVTSRN-----RDADMNEYGET-------------DDILIVKLRKGQELRLRAYAK 166
+ + RN RD G+ DIL+ KLR GQE+ LR +
Sbjct: 183 PKEL---YRNAHIYARDLKFEPQGKQLETFAKCPVVPADPDILLAKLRPGQEISLRVHCI 239
Query: 167 KGFGKEHAKWNPTA 180
G G +HAK++P A
Sbjct: 240 LGIGSDHAKFSPVA 253
>gi|336263008|ref|XP_003346286.1| hypothetical protein SMAC_05823 [Sordaria macrospora k-hell]
gi|380093615|emb|CCC08579.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 378
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 93/179 (51%), Gaps = 25/179 (13%)
Query: 20 KFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EV 78
+F + + S+AN+ RR+ IA+ PT+AI+ + + N++V+ DE + R+GLIP T E
Sbjct: 76 QFSLIGVDASIANAFRRIMIADIPTLAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKEG 135
Query: 79 VDRIL--YSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK---------STDARV 127
+ L Y + T D+ +VE L VKC ++Q + D K + D +
Sbjct: 136 LHNFLKWYKKGETPCDY---NTVELELKVKCENNQNAPTDSKDPKELYHNAHVYAKDIKF 192
Query: 128 VPVTSRNRDADMNEYGE------TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
VP + R A GE DIL+ K+R GQE+ L + KG G +HAK++P A
Sbjct: 193 VP---KGRQAKYFS-GENVIRPTNPDILVAKMRPGQEIDLTMHMHKGVGSDHAKFSPVA 247
>gi|50307479|ref|XP_453719.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642853|emb|CAH00815.1| KLLA0D14861p [Kluyveromyces lactis]
Length = 334
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 92/182 (50%), Gaps = 10/182 (5%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I L + V F + + S+AN+ RR+ I+E P++A ++V N++VL DE +A RI
Sbjct: 42 VQIESLDEREVNFDLVHVDTSIANAFRRIMISEVPSVAPEYVYFFNNTSVLQDEVLAHRI 101
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV---------DDQTRHVTTAD 119
GL+PL D + + + F E ++ +L+VKC +D A
Sbjct: 102 GLVPLKVDPDMLSWVDTSLPESERFTDENTIVMSLNVKCTRNPDAPKDCEDPKVLYRNAH 161
Query: 120 LKSTDARVVPVTSR-NRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+ + D + P + + A DIL+ KLR GQE+ LRA+ G G +HAK++P
Sbjct: 162 IYARDLKFEPQGKQVEQFAKCPVVAADPDILLAKLRPGQEISLRAHCILGIGADHAKFSP 221
Query: 179 TA 180
+
Sbjct: 222 VS 223
>gi|344264275|ref|XP_003404218.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Loxodonta africana]
Length = 306
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 99/185 (53%), Gaps = 19/185 (10%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 11 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 70
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV---------DDQTRHVTTAD 119
GLIP+ +D R+ R+ + +++F L V+C D +
Sbjct: 71 GLIPIHADP---RLFEYRNQEDEEGTEIDTLQFRLQVRCTRNPHASKDSSDPSELYVNHK 127
Query: 120 LKSTDARVVPVTSRNRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
+ + VP+ ++ AD+ G DDILI +LR GQE+ L + KG GK+HAK
Sbjct: 128 VYTRHMTWVPLGNQ---ADVFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAK 184
Query: 176 WNPTA 180
++P A
Sbjct: 185 FSPVA 189
>gi|297290919|ref|XP_001096103.2| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1,
partial [Macaca mulatta]
Length = 298
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 32/191 (16%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 4 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 63
Query: 69 GLIPLTSDEVVDRILYSR----DCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTD 124
GLIP+ +D R+ R D T +D ++ F L V+C TR+ A S+D
Sbjct: 64 GLIPIHADP---RLFEYRNQDEDGTEID-----TLRFRLQVRC----TRNPHAAK-DSSD 110
Query: 125 ARVVPVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGF 169
+ V + AD+ G DDILI +LR GQE+ L + KG
Sbjct: 111 PNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGI 170
Query: 170 GKEHAKWNPTA 180
GK+HAK++P A
Sbjct: 171 GKDHAKFSPVA 181
>gi|195437356|ref|XP_002066606.1| GK24584 [Drosophila willistoni]
gi|194162691|gb|EDW77592.1| GK24584 [Drosophila willistoni]
Length = 332
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 98/175 (56%), Gaps = 12/175 (6%)
Query: 16 DENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTS 75
+E ++F + ++AN+ RR+ ++E P+MAI+ V + N++++ DE +A R+GL+PL +
Sbjct: 49 EEGLEFDLIGVYPAIANAFRRLMLSEVPSMAIEKVYIYNNTSIIQDEVLAHRMGLLPLKA 108
Query: 76 DEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV--DDQTRHVTTADLKSTDARV------ 127
D + Y + + + + ++E+ L VKC D ++ +T D + +V
Sbjct: 109 DPRL--FTYRTEESPENGTEQDTLEYELKVKCTRRKDASKDQSTFDEIYKNHKVFSGHLK 166
Query: 128 -VPVTSRNRDADMNEYG-ETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+P + + + G +DILI +LR G E+ LR A KG GK+HAK++P A
Sbjct: 167 WLPKGKQGQIYTESSVGCIHEDILIAQLRPGHEMDLRLIAVKGLGKDHAKFSPVA 221
>gi|49618929|gb|AAT68049.1| RNA polymerase I 140 kDa subunit [Danio rerio]
Length = 343
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 98/177 (55%), Gaps = 14/177 (7%)
Query: 15 TDEN-VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPL 73
+DEN ++F + + ++AN+ RR+ +AE PTMAI+ V + N++++ DE +A R+GL+P+
Sbjct: 53 SDENTLEFDMIGIDAAIANAFRRILLAEVPTMAIEKVFIYNNTSIIQDEILAHRLGLVPI 112
Query: 74 TSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK---------STD 124
+D R+ R+ + +++ L VKC + ++D K S D
Sbjct: 113 KADP---RLFEYRNSEDQEGTEIDTIQLQLKVKCTRNPRAPKDSSDPKELYLNHMIYSGD 169
Query: 125 ARVVPVTSR-NRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ +P+ ++ + AD DIL+ ++R GQEL + + KG GK HAK++P A
Sbjct: 170 IKWLPIGNQADVFADAKIGPVHGDILLAQVRPGQELDIVMHCVKGIGKNHAKFSPVA 226
>gi|260950905|ref|XP_002619749.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238847321|gb|EEQ36785.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 333
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 14/184 (7%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I + N F + + S+AN+ RR+ IAE P++A + V + N++V+ DE +A RI
Sbjct: 41 IDIKYIAGRNANFDLRHIDTSIANAFRRIMIAEVPSVAAETVYVFNNTSVIQDEVLAHRI 100
Query: 69 GLIPLTSDEVVDRILYSRDCT--CVDFCSECSVEFTLDVKCVDDQTRHVTTADLK----- 121
GLIPL D D +++ F ++ +LDV C + T D K
Sbjct: 101 GLIPLNVDP--DALVWIDPAADEAERFNDTNTIVMSLDVSCTRNPHAPAGTTDPKLLYRN 158
Query: 122 -STDARVVPVTSRNRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
S AR + + R A++ + DIL+ KLR GQE+ LR + G G +HAK+
Sbjct: 159 SSVYARDLKFEPQGRQAELFKDSPVVPCDPDILLAKLRPGQEISLRVHCVLGVGSDHAKF 218
Query: 177 NPTA 180
+P A
Sbjct: 219 SPVA 222
>gi|255071753|ref|XP_002499551.1| predicted protein [Micromonas sp. RCC299]
gi|226514813|gb|ACO60809.1| predicted protein [Micromonas sp. RCC299]
Length = 394
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 51/219 (23%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ IT + E V F+++ ++AN+ RR+ IAE PTMAI+ V + N++V+ DE A R+
Sbjct: 54 MEITHMDAERVVFEMQGISPAIANAFRRILIAEVPTMAIEKVYMVNNTSVIQDEVFAHRL 113
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS------ 122
GLIP+ +D L+ + ++ F ++V+C ++T + L +
Sbjct: 114 GLIPIRADPR----LFEYKAEGETYNERNTIVFKMNVRCYREKTDDGSKGPLMNSFVYTN 169
Query: 123 ----------------------TDARVVPVTSRN------------------RDADMNEY 142
T ++ + RN D D NE
Sbjct: 170 ELVWLPKGSELPPDEESKFTAFTQSQAEYLKERNDEAAAAAAAAGEEVTPLYGDNDPNEI 229
Query: 143 GET-DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
DDIL+ K+ GQE+ L A+ KG GKEHAKW+P
Sbjct: 230 ATVHDDILLCKMVAGQEIELEAHCVKGQGKEHAKWSPVG 268
>gi|402469296|gb|EJW04273.1| hypothetical protein EDEG_01455 [Edhazardia aedis USNM 41457]
Length = 313
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 97/177 (54%), Gaps = 10/177 (5%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y ++ + I + T +++F +++ + S+AN+LRR+ IAE PTMAI++V + V+ +E
Sbjct: 23 YLDKIELEIINHTSNSLEFDLKNVDCSIANALRRILIAELPTMAIEYVNFYKYNGVIPEE 82
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS 122
+A R+GL+P+ D V S D + +++F L + + VT+ D+K
Sbjct: 83 ILAHRLGLLPILIDPKVFEYKNSTDTE----NEKNALKFVLKKQNNMNDIVVVTSDDIKW 138
Query: 123 TDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
VP+ ++ +D + I I K+ GQE+ + YA KG GK+HAKW+P
Sbjct: 139 -----VPLGNQ-KDTLVPRPRIKSGIPITKICNGQEIEIEMYAIKGIGKDHAKWSPV 189
>gi|374327628|ref|YP_005085828.1| DNA-directed RNA polymerase subunit D (rpoD) [Pyrobaculum sp. 1860]
gi|356642897|gb|AET33576.1| DNA-directed RNA polymerase subunit D (rpoD) [Pyrobaculum sp. 1860]
Length = 260
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 89/173 (51%), Gaps = 19/173 (10%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
P + + + +K VE ++ NSLRRV I+E P MAID V + N++V+ DE +A
Sbjct: 1 MPQARVVEKSGLFLKAVVEGVPPTLINSLRRVIISELPVMAIDSVVVVNNTSVMYDEMLA 60
Query: 66 SRIGLIPLTSDEVVDRILYSRDC-TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTD 124
R+GLIPLT+ + + DC + + SECS TL V D T V + DL S
Sbjct: 61 HRLGLIPLTTP--LSALPPIEDCVSGLADPSECSARLTLQVTADGDLT--VYSGDLVSER 116
Query: 125 ARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
V PV DI IVKL KGQ + L AYAK G ++HAKW
Sbjct: 117 PDVAPVYK--------------DIPIVKLVKGQSIVLEAYAKLGVARDHAKWQ 155
>gi|348538459|ref|XP_003456708.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Oreochromis niloticus]
Length = 351
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 102/186 (54%), Gaps = 17/186 (9%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ + L + +++F + + ++AN+ RR+ +AE PTMA++ V + +N++++ DE +A R+
Sbjct: 52 IDVVHLDENSMEFDMVGIDAAIANAFRRILLAEVPTMAMEKVFIYSNTSIVQDEVLAHRL 111
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSEC----SVEFTLDVKCVDDQTRHVTTAD----- 119
GLIP+ +D R+ R+ E +++ L +KC + ++D
Sbjct: 112 GLIPIKADP---RLFEYRNTGEESAEEEGSEIDTIQLQLKIKCSRNPRASKDSSDPRELY 168
Query: 120 ----LKSTDARVVPVTSR-NRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
+ S D + VP+ ++ + AD DDILI +LR GQEL + + KG GK+HA
Sbjct: 169 LNHMVYSKDIKWVPIGNQADVFADCCIGPVHDDILIAQLRPGQELDIVMHCVKGIGKDHA 228
Query: 175 KWNPTA 180
K++P A
Sbjct: 229 KFSPVA 234
>gi|224009616|ref|XP_002293766.1| dna-directed RNA polymerase I 40kDa polypeptide, rpo1-1-like
protein [Thalassiosira pseudonana CCMP1335]
gi|220970438|gb|EED88775.1| dna-directed RNA polymerase I 40kDa polypeptide, rpo1-1-like
protein [Thalassiosira pseudonana CCMP1335]
Length = 351
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 98/188 (52%), Gaps = 32/188 (17%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD 80
F+V ++S AN+LRR+ IAE PTMA++ V + NS+++ DE ++ R+GL+PL VD
Sbjct: 59 FEVVGVDVSFANALRRIMIAEIPTMALEHVYMWNNSSLIHDEVLSHRLGLVPLN----VD 114
Query: 81 RILYSRDCTCVDFCSECS------VEFTLD-----------VKCVDDQ-----TRHVTTA 118
L+ VD E + + F L+ K V D T+H+ T
Sbjct: 115 PRLFDEYGVDVDEVGEVAATDRNTIVFRLNEATSLHSSSNQQKTVIDSPHRPFTKHIYTR 174
Query: 119 DL----KSTDARVVPVTSRNRDADMNEYGE--TDDILIVKLRKGQELRLRAYAKKGFGKE 172
DL + + P+ S + + ++DIL+ KLR GQ + L A+A+KG GK+
Sbjct: 175 DLLWAPQGSQLTNFPLHSTGVGSGVGGGIRPISEDILLAKLRPGQVIELEAHARKGVGKD 234
Query: 173 HAKWNPTA 180
HAK++P A
Sbjct: 235 HAKFSPVA 242
>gi|71013592|ref|XP_758635.1| hypothetical protein UM02488.1 [Ustilago maydis 521]
gi|46098293|gb|EAK83526.1| hypothetical protein UM02488.1 [Ustilago maydis 521]
Length = 320
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 98/182 (53%), Gaps = 14/182 (7%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V +T L+D + +F + + S+AN++RRV +AE PT+AI+ V + N++++ DE ++ R+
Sbjct: 95 VIVTRLSDASCEFDLIGVDASIANAVRRVLMAEVPTVAIEHVYIWNNTSIIQDEVLSHRL 154
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQT--RHVTTAD------- 119
GL+PL + D++ D +V F L KC +++ R T D
Sbjct: 155 GLVPLAINP--DKVAMRMPGDEAD--DSNTVVFHLKAKCERNRSAARGETDPDKLYIGHN 210
Query: 120 LKSTDARVVPVTSRNRD-ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+ S R + +D AD D ILI KLR GQEL L + +KG GK+HAK++P
Sbjct: 211 VYSEQLRWDAKGGQEKDFADSPPRPVQDKILIAKLRPGQELDLELHCEKGIGKDHAKFSP 270
Query: 179 TA 180
A
Sbjct: 271 VA 272
>gi|340722889|ref|XP_003399833.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Bombus terrestris]
Length = 505
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 30/186 (16%)
Query: 16 DENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTS 75
+ ++F + + AN+ RRV ++E PTMAI+ V + N++++ DE +A R+GLIPL +
Sbjct: 51 ERELEFDLIGYPVGFANAFRRVLLSEVPTMAIEKVYIVNNTSLIQDEVLAHRLGLIPLQA 110
Query: 76 DEVVDRILYSRDCTCVD---FCSECSVEFTLDVKC------------VDDQTRHVTTADL 120
D R+ T D + ++ + L V C +D R+ +++
Sbjct: 111 D---PRLFEYPSSTIKDEDEVSDQDTLRYELKVSCTWNPQAPKDSRRTNDMYRN---SNV 164
Query: 121 KSTDARVVPVTSRNRDADMNEYGE------TDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
S D + VP+ R A++ G DDILI K+R GQE+ + +A KG GK+HA
Sbjct: 165 YSKDIKWVPI---GRQAEIYPRGAEQLGVLEDDILICKMRPGQEIHVFMHAVKGIGKDHA 221
Query: 175 KWNPTA 180
K++P A
Sbjct: 222 KFSPVA 227
>gi|322783207|gb|EFZ10793.1| hypothetical protein SINV_03179 [Solenopsis invicta]
Length = 344
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 98/186 (52%), Gaps = 16/186 (8%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
++I D ++F + S+AN+ RR+ ++E PTMAI+ V + N+++L DE +A R+
Sbjct: 40 INIVQEQDREIEFDIIGCHTSLANAFRRILLSEVPTMAIEKVYIVNNTSLLQDEILAHRL 99
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKC-VDDQTRH--------VTTAD 119
GLIPL +D + S + + ++ + L V C V+ Q +
Sbjct: 100 GLIPLRADPRLFEYPPSNARADDEISDQDTLRYELKVTCTVNPQAPKNSHNPEDMYKNSK 159
Query: 120 LKSTDARVVPVTSRN----RDADMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHA 174
+ S D + VP+ + R A+ E+G + DIL+ K+R G E+ L +A K GK+HA
Sbjct: 160 VYSKDIKWVPIGQQGEMFPRGAE--EFGVLENDILLCKMRPGHEIHLFMHAIKSIGKDHA 217
Query: 175 KWNPTA 180
K++P A
Sbjct: 218 KFSPVA 223
>gi|517290|emb|CAA56480.1| RNA polymerase subunit D [Sulfolobus acidocaldarius]
Length = 264
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 16/163 (9%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
++ +E+ L NS+RR I P MA+D V N++ L DE +A R+ L+P SDE
Sbjct: 13 LRLVLENYPLEFVNSIRRASILYVPVMAVDEVYFIENNSPLYDEILAHRLALVPFVSDEA 72
Query: 79 VDRILYSRDCT-CVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDA 137
++ +C C + C C LDV+ DQ+ + + DLKS D + PV+
Sbjct: 73 LEHYRPPEECAECKENCDGCYNRVYLDVE-AKDQSLMIYSRDLKSEDQMITPVSG----- 126
Query: 138 DMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
I IV L Q++ L A + G+GKEH K++P +
Sbjct: 127 ---------AIPIVLLGSKQKISLEARLRLGYGKEHIKYSPVS 160
>gi|149247366|ref|XP_001528095.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Lodderomyces elongisporus NRRL YB-4239]
gi|146448049|gb|EDK42437.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Lodderomyces elongisporus NRRL YB-4239]
Length = 336
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 97/191 (50%), Gaps = 28/191 (14%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ IT++ + + F + + S+AN+ RR+ IAE P++A + V L N++V+ DE +A RI
Sbjct: 44 IKITNIAERSATFDLIHVDTSIANAFRRIMIAEVPSVAAETVYLYMNTSVIQDEVLAHRI 103
Query: 69 GLIPLTSDE----VVDRIL-----YSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTAD 119
GLIPL D VD+ L Y+ D T V TLDV C + + D
Sbjct: 104 GLIPLKVDPDSLTWVDKKLDESERYTEDNTIV---------LTLDVACSKNLQAPKNSTD 154
Query: 120 ----LKSTDARVVPVTSRNRDADMNEYGET------DDILIVKLRKGQELRLRAYAKKGF 169
K++ + + + + +Y ++ DIL+ KLR GQE+ +R + G
Sbjct: 155 PKEMYKNSHVYARDLKFEPQGSQLEKYKDSPVVPCDPDILLAKLRPGQEISMRVHCILGL 214
Query: 170 GKEHAKWNPTA 180
G +HAK++P A
Sbjct: 215 GCDHAKFSPVA 225
>gi|374633843|ref|ZP_09706208.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Metallosphaera yellowstonensis MK1]
gi|373523631|gb|EHP68551.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Metallosphaera yellowstonensis MK1]
Length = 262
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 16/164 (9%)
Query: 18 NVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDE 77
++ + L NS+RR + P MA+D V + N++ L DE +A R+ LIP S++
Sbjct: 12 HINLLIHGYPLEFVNSVRRACMLFVPVMAVDEVYVIENNSPLYDEVLAHRLALIPFESND 71
Query: 78 VVDRILYSRDC-TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRD 136
+D +C C + C C + +DV + Q + V + D+K+ D VVP++
Sbjct: 72 AIDYYRRPEECENCTENCERCFTKIYIDVSAEETQ-KMVYSRDIKTEDPHVVPISR---- 126
Query: 137 ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
DI IV L K Q++ L A + G+GKEHAK+ P +
Sbjct: 127 ----------DIPIVLLGKNQKVSLEAKVRLGYGKEHAKFMPVS 160
>gi|343427703|emb|CBQ71230.1| probable Rpc40-40 kD subunit of DNA-directed RNA polymerases I and
III [Sporisorium reilianum SRZ2]
Length = 402
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 98/184 (53%), Gaps = 22/184 (11%)
Query: 11 ITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGL 70
+T L+D + +F + + S+AN++RRV +AE PT+AI+ V + N++++ DE ++ R+GL
Sbjct: 102 VTRLSDASCEFDLIGVDASIANAVRRVLMAEVPTVAIEHVYIWNNTSIIQDEVLSHRLGL 161
Query: 71 IPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTR-------------HVTT 117
+PL + D++L D +V F L KC +++ H
Sbjct: 162 VPLAINP--DKVLMRNAGDDAD--DSNTVVFHLKAKCERNRSAARGETDPDKLYIGHNVY 217
Query: 118 ADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
++ DA+ ++ D AD D ILI KLR GQEL L + +KG GK+HAK+
Sbjct: 218 SEQLQWDAK----GGQDEDFADAPPRPVHDKILIAKLRPGQELDLELHCEKGIGKDHAKF 273
Query: 177 NPTA 180
+P A
Sbjct: 274 SPVA 277
>gi|212276110|ref|NP_001130839.1| uncharacterized protein LOC100191943 [Zea mays]
gi|194690246|gb|ACF79207.1| unknown [Zea mays]
gi|413926820|gb|AFW66752.1| hypothetical protein ZEAMMB73_992882 [Zea mays]
Length = 372
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 97/191 (50%), Gaps = 23/191 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I LT++ ++F + + S+AN+ RR+ I+E PTMAI+ V + N++V++DE ++ R+
Sbjct: 74 IEINRLTEDYMEFDMIGIDASIANAFRRILISEVPTMAIEKVFMADNNSVIADEVLSHRL 133
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTR-HVTTADLK-----S 122
GLIPL +D + + D ++ + L V C + R V +++L+ S
Sbjct: 134 GLIPLDADPRLFEYISENDVP----NERNTIVYKLHVSCPKNSQRITVKSSELEWLPEGS 189
Query: 123 TDARVVPVTSRNRDADMNEYGETD-------------DILIVKLRKGQELRLRAYAKKGF 169
+ P S ++ + ++ DI I +L GQ + L A+A KG
Sbjct: 190 QLSMSAPAQSGDKQKTFTSFSQSQKEILEKPLGVKYKDITIARLGPGQAIELEAHAVKGT 249
Query: 170 GKEHAKWNPTA 180
G HAKW+P A
Sbjct: 250 GNVHAKWSPVA 260
>gi|403261372|ref|XP_003923097.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Saimiri boliviensis boliviensis]
Length = 346
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 101/185 (54%), Gaps = 19/185 (10%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTAD--------- 119
GLIP+ +D R+ R+ + +++F L V+C + ++D
Sbjct: 111 GLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYMNHK 167
Query: 120 LKSTDARVVPVTSRNRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
+ + +P+ ++ AD+ G DDILI +LR GQE+ L + KG GK+HAK
Sbjct: 168 VYTRHMTWIPLGNQ---ADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAK 224
Query: 176 WNPTA 180
++P A
Sbjct: 225 FSPVA 229
>gi|7505021|pir||T34006 hypothetical protein H43I07.2 - Caenorhabditis elegans
Length = 697
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 23/201 (11%)
Query: 3 YANQPSVHITDLTDEN--VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
Y +Q V + + +D+ ++F + E +AN+LRRV IAE PTMA++ + L N++V+
Sbjct: 381 YCDQIQVAMVNESDDGMTLEFDITRIEAPIANALRRVLIAEVPTMALEKIYLYQNTSVIQ 440
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVE----------FTLDVKCVDD 110
DE + R+GL+PL D + + + +C E F ++V C +
Sbjct: 441 DEVLCHRLGLLPLRVDPRGFQFPKEKVVGINEKGVDCDEEPEGDPAKNLIFKINVSCTKN 500
Query: 111 QTRHVTTADLK------STDARV---VPVTSRNRDADMNEYGE--TDDILIVKLRKGQEL 159
+ T D K S +R VP+ + + +DDIL+ KLR GQE+
Sbjct: 501 RNAVPTATDPKQLYHNSSVYSRAFEWVPIADQKTQFTEEAHPRMVSDDILVAKLRPGQEI 560
Query: 160 RLRAYAKKGFGKEHAKWNPTA 180
+A KG G++HAK++P A
Sbjct: 561 EASCHAVKGIGRDHAKFSPVA 581
>gi|348576230|ref|XP_003473890.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cavia porcellus]
Length = 346
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ + +++F L V+C TR+ A S+D +
Sbjct: 111 GLIPIHADP---RLFEFRNEGDEEGTEIDTLQFRLQVRC----TRNPHAAK-DSSDPNEL 162
Query: 129 PVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
V + AD+ G DDILI +LR GQE+ L + KG GK+H
Sbjct: 163 YVNHKVYTRHMTWVPLGNQADVFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 222
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 223 AKFSPVA 229
>gi|575586|dbj|BAA06735.1| mouse RNA polymerase I 40kD subunit [Mus musculus]
Length = 355
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 99/187 (52%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + ++ ++F + + ++AN+ RR+ +A PTMA++ V + N++++ DE +A R+
Sbjct: 60 VGVVQMDEDTLEFDMVGIDAAIANAFRRILLARVPTMAVEKVLVYNNTSIVQDEILAHRL 119
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ + +++F L V+C TR+ A S+D +
Sbjct: 120 GLIPILADP---RLFEYRNQGEEEGTEIDTLQFRLQVRC----TRNPNAAK-DSSDPNEL 171
Query: 129 PVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
V + AD+ G DDILI +LR GQE+ L + KG GK+H
Sbjct: 172 YVNHKVYTRHMTWVPLGNQADVFPEGTIRPVHDDILIAQLRPGQEIDLMMHCVKGIGKDH 231
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 232 AKFSPVA 238
>gi|367015666|ref|XP_003682332.1| hypothetical protein TDEL_0F03100 [Torulaspora delbrueckii]
gi|359749994|emb|CCE93121.1| hypothetical protein TDEL_0F03100 [Torulaspora delbrueckii]
Length = 335
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 94/191 (49%), Gaps = 16/191 (8%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ N V I LT+ F + + S+AN+ RR+ I+E P++A + V N++V+ DE
Sbjct: 36 FKNTFDVQIESLTEREANFDLIHIDTSIANAFRRIMISEVPSLAPEHVYFLNNTSVIQDE 95
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEFTLDVKCVDDQTRHVTTAD 119
+A RIGL+PL D +L D T + F E ++ TL+V C + D
Sbjct: 96 VLAHRIGLVPLKVDP---DMLTWVDSTLPEEERFTDENTIVLTLNVTCTRNPDAPKDCTD 152
Query: 120 LK------STDARVVPVTSRNRDADMNE----YGETDDILIVKLRKGQELRLRAYAKKGF 169
K S A + + R A++ DIL+ KLR GQE+ LRA+ G
Sbjct: 153 PKILYRNSSVYAHDLKFEPQGRQAELFAKCPVVPADPDILLAKLRPGQEISLRAHCILGV 212
Query: 170 GKEHAKWNPTA 180
G +HAK++P A
Sbjct: 213 GGDHAKFSPVA 223
>gi|149732228|ref|XP_001502091.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Equus caballus]
Length = 346
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 99/187 (52%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ D R+ R+ + +++F L V+C TR+ A S+D +
Sbjct: 111 GLIPIHVDP---RLFEYRNQGDEEGTEIDTLQFRLQVRC----TRNPHAAK-DSSDPSEL 162
Query: 129 PVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
V + AD+ G DDILI +LR GQE+ L + KG GK+H
Sbjct: 163 YVNHKVYTRHMIWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 222
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 223 AKFSPVA 229
>gi|403213911|emb|CCK68413.1| hypothetical protein KNAG_0A07600 [Kazachstania naganishii CBS
8797]
Length = 334
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 98/191 (51%), Gaps = 28/191 (14%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I+ +++ F + + SVAN+ RR+ I+E P++A ++V + N++V+ DE +A RI
Sbjct: 42 IKISSMSEREANFDLVHIDTSVANAFRRIMISEVPSVAAEYVYVMNNTSVIQDEVLAHRI 101
Query: 69 GLIPLTSDE----VVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTD 124
G+IPL D +D+ L + F E +V TL+VKC TR++ A TD
Sbjct: 102 GMIPLKVDPDMLTWIDQSLSEEE----KFTDENTVVLTLNVKC----TRNL-NAPKDCTD 152
Query: 125 ARVVPVTSR--NRDADMNEYGET-------------DDILIVKLRKGQELRLRAYAKKGF 169
+++ S RD G+ DIL+ KLR QE+ LR + G
Sbjct: 153 PKILYKNSSVYARDLRFEPQGKQLETFADCPVVPSDPDILLAKLRPNQEISLRVHCILGI 212
Query: 170 GKEHAKWNPTA 180
G +HAK++P A
Sbjct: 213 GSDHAKFSPVA 223
>gi|340058077|emb|CCC52431.1| putative DNA-directed RNA polymerase, alpha subunit [Trypanosoma
vivax Y486]
Length = 389
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E + F ++ +AN RR+ + E P +A D + +E N +++ DE +A RIGL+P+
Sbjct: 98 ETITFDMDHVSPPIANMFRRLMLTEVPVLAFDRILIEENDSIMPDELLAHRIGLVPVAGP 157
Query: 77 EVVDRILYSRDCTCVDFCSECSVE---FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSR 133
V RI Y D + F + F LDV + R V + S D + P+ S+
Sbjct: 158 --VSRIHYVTDSQQISFDALDPTRVLLFELDV----EGRRGVQATSVYSGDLKWRPLPSQ 211
Query: 134 ----NRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+D + DI++ +L GQ L+LRA A KG G HAKW P +
Sbjct: 212 EPWGTGQSDDRVFLVHPDIVLTRLGPGQRLKLRAIALKGIGAVHAKWAPVS 262
>gi|85119573|ref|XP_965664.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Neurospora crassa OR74A]
gi|28927476|gb|EAA36428.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Neurospora crassa OR74A]
Length = 378
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 95/178 (53%), Gaps = 23/178 (12%)
Query: 20 KFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EV 78
+F + + S+AN+ RR+ IA+ PT+AI+ + + N++V+ DE + R+GLIP T E
Sbjct: 76 QFSLIGVDASIANAFRRIMIADIPTLAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKEG 135
Query: 79 VDRIL--YSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK---------STDARV 127
+ L Y + T D+ +VE L VKC ++++ + D K + D +
Sbjct: 136 LHNFLKWYKKGETPCDY---NTVELELKVKCENNESAPADSKDPKELYHNAHVYAKDIKF 192
Query: 128 VPVTSRNRDADM----NEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
VP + R A N T+ DIL+ K+R GQE+ L + KG G +HAK++P A
Sbjct: 193 VP---KGRQAKYFSGENAIRPTNPDILVAKMRPGQEIDLTMHMHKGVGSDHAKFSPVA 247
>gi|440800830|gb|ELR21864.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 350
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 12/168 (7%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD 80
F + + VAN+ RR+ ++E PTMAI+ V + N++++ DE +A R+GLIP+ VD
Sbjct: 73 FDLIGVDAPVANAFRRILLSEIPTMAIEHVWIHNNTSIIQDEVLAHRLGLIPIK----VD 128
Query: 81 RILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV-------PVTSR 133
+ + E ++ F L V+C + + +++V PV +
Sbjct: 129 PRKFEFKKPGEEETDETTLVFKLKVRCTRSNNTNPQNPEEAYVNSKVYSRDLIWEPVGGQ 188
Query: 134 NR-DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
AD DDILI KLR GQE+ + KG GKEHAKW+P +
Sbjct: 189 AELFADDPPRPVHDDILIAKLRPGQEIEVECRCAKGEGKEHAKWSPVS 236
>gi|350297001|gb|EGZ77978.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Neurospora tetrasperma FGSC 2509]
Length = 378
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 95/178 (53%), Gaps = 23/178 (12%)
Query: 20 KFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EV 78
+F + + S+AN+ RR+ IA+ PT+AI+ + + N++V+ DE + R+GLIP T E
Sbjct: 76 QFSLIGVDASIANAFRRIMIADIPTLAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKEG 135
Query: 79 VDRIL--YSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK---------STDARV 127
+ L Y + T D+ +VE L VKC ++++ + D K + D +
Sbjct: 136 LHNFLKWYKKGETPCDY---NTVELELKVKCENNESAPADSKDPKELYHNAHVYAKDIKF 192
Query: 128 VPVTSRNRDADM----NEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
VP + R A N T+ DIL+ K+R GQE+ L + KG G +HAK++P A
Sbjct: 193 VP---KGRQAKYFSGENAIRPTNPDILVAKMRPGQEIDLTMHMHKGVGSDHAKFSPVA 247
>gi|297678210|ref|XP_002816974.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Pongo abelii]
Length = 346
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 100/187 (53%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ + +++F L V+C TR+ A S+D +
Sbjct: 111 GLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQVRC----TRNPHAAK-DSSDPNEL 162
Query: 129 PVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
V + AD+ G +DILI +LR GQE+ L + KG GK+H
Sbjct: 163 YVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHNDILIAQLRPGQEIDLLMHCVKGIGKDH 222
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 223 AKFSPVA 229
>gi|341897190|gb|EGT53125.1| hypothetical protein CAEBREN_31421 [Caenorhabditis brenneri]
Length = 365
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 93/183 (50%), Gaps = 21/183 (11%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
++F + E +AN+LRR+ +AE PTMA++ + L N++V+ DE + R+GL+PL D
Sbjct: 67 LEFDIIRIEAPIANALRRILLAEVPTMALEKIYLYQNTSVIQDEVLCHRLGLLPLRVDPR 126
Query: 79 VDRILYSRDCTCVDFCSECSVE----------FTLDVKCVDDQTRHVTTADLK------S 122
+ + + +C E F ++V C ++ T D K S
Sbjct: 127 AFQFPTEKVVGINEKGVDCDEEPEGDPTRNLIFKINVACTKNRNAANGTTDPKQLYHHSS 186
Query: 123 TDARV---VPVTSRNRDADMNEYGE--TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
+R +P+ ++ N + +DDIL+ KLR GQE+ +A KG G++HAK++
Sbjct: 187 VYSRAFEWIPIGNQKEGYTKNNKPKMVSDDILVAKLRPGQEIEASCHAVKGIGRDHAKFS 246
Query: 178 PTA 180
P A
Sbjct: 247 PVA 249
>gi|291000877|ref|XP_002683005.1| predicted protein [Naegleria gruberi]
gi|284096634|gb|EFC50261.1| predicted protein [Naegleria gruberi]
Length = 398
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 24/183 (13%)
Query: 16 DEN-VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT 74
DEN + F++ + +AN+ RR+ ++E P+MAI+ V N++++ DE +A RIGL+P+
Sbjct: 65 DENDLVFEMIGIDAPIANAFRRIMLSEVPSMAIEKVVYLTNTSIIQDEVLAHRIGLVPIR 124
Query: 75 SDEVVDRILYSRDCTC---VDFCSECSVEFTLDVKC-------VDDQTR-HVTTADLKST 123
D D ++RD + + F L+V C +Q + + + S
Sbjct: 125 CDP--DFFFFARDINQNEDIILLDNEYILFELNVTCEKTLVPNPHNQNKLEYKHSKVYSG 182
Query: 124 DARVVPVTSRNRDADMNEYGET------DDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
D + VP+ N+ N GE DDIL+ KL GQ + ++ Y KG G+ HAKW
Sbjct: 183 DLKWVPIG--NQSTHFN--GENAIRPVYDDILLAKLNPGQSIHVQCYCVKGIGRSHAKWQ 238
Query: 178 PTA 180
P A
Sbjct: 239 PVA 241
>gi|66812176|ref|XP_640267.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|74855077|sp|Q54SN4.1|RPAC1_DICDI RecName: Full=DNA-directed RNA polymerases I and III subunit rpac1;
Short=RNA polymerases I and III subunit AC1
gi|60468282|gb|EAL66291.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
Length = 345
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 10/163 (6%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD 80
F++ + +AN+LRR+ I+E PTMAI+ V + N+++L DE +A R+G+IP+ VD
Sbjct: 73 FEMIGIDAPIANALRRIMISEIPTMAIEKVYIINNTSILQDEVLAHRLGMIPIK----VD 128
Query: 81 RILYSRDCTCVDFCSECSVEFTLDVKCVDDQ-TRHVTTADLKSTDARVVPVTSRNRDADM 139
++ ++ +E ++ F L VKC D T + S VP T +
Sbjct: 129 PRKFNFKLPNKEYTAEDTLIFQLKVKCEKDSVTGKIINETALSKHLIWVP-TQDQEEMFP 187
Query: 140 NEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
NE DDI I+KLR GQ + ++ Y +K G+EH KW+P
Sbjct: 188 NEEDRPRPMEDDIPIMKLRPGQVIDIQCYCEKNIGREHIKWSP 230
>gi|344303022|gb|EGW33296.1| RNA polymerase III (C) subunit [Spathaspora passalidarum NRRL
Y-27907]
Length = 335
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 12/183 (6%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I LT+ F + + S+AN+ RR+ IAE P++A + V + N++V+ DE +A RI
Sbjct: 43 IDIKYLTERTANFDLVHIDTSIANAFRRIMIAEVPSVAAEAVYMFMNTSVIQDEVLAHRI 102
Query: 69 GLIPLTSD-EVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK------ 121
GLIPL D +++ + ++D + + ++ +LDV C + + + K
Sbjct: 103 GLIPLKVDPDLLSWVDKTQDENN-RYTEDNTIVLSLDVVCTKNPNAPKNSTNAKELYRNS 161
Query: 122 ---STDARVVPVTSRNRDADMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
++D + P S+ N D +IL+ KLR GQE+ LRA+ G G +HAK++
Sbjct: 162 HVYASDLKFEPHGSQLEKFKNNPVVPADPNILLAKLRPGQEISLRAHCILGIGSDHAKFS 221
Query: 178 PTA 180
P A
Sbjct: 222 PVA 224
>gi|70605933|ref|YP_254803.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
DSM 639]
gi|449066125|ref|YP_007433207.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
N8]
gi|449068401|ref|YP_007435482.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
Ron12/I]
gi|73920766|sp|P39471.2|RPOD_SULAC RecName: Full=DNA-directed RNA polymerase subunit D
gi|68566581|gb|AAY79510.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
DSM 639]
gi|449034633|gb|AGE70059.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
N8]
gi|449036909|gb|AGE72334.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
Ron12/I]
Length = 264
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 16/163 (9%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
++ +E+ L NS+RR I P MA+D V N++ L DE +A R+ L+P SDE
Sbjct: 13 LRLVLENYPLEFVNSIRRASILYVPVMAVDEVYFIENNSPLYDEILAHRLALVPFVSDEA 72
Query: 79 VDRILYSRDCT-CVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDA 137
++ +C C + C C LDV+ DQ + + DLKS D + PV+
Sbjct: 73 LEHYRPPEECAECKENCDGCYNRVYLDVE-AKDQPLMIYSRDLKSEDQMITPVSG----- 126
Query: 138 DMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
I IV L Q++ L A + G+GKEH K++P +
Sbjct: 127 ---------AIPIVLLGSKQKISLEARLRLGYGKEHIKYSPVS 160
>gi|383850329|ref|XP_003700748.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Megachile rotundata]
Length = 509
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 97/183 (53%), Gaps = 24/183 (13%)
Query: 16 DENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTS 75
+ ++F + + +AN+ RRV ++E P+MAI+ V + N+++L DE +A R+GLIPL +
Sbjct: 50 ERELEFDLIGYPVGLANAFRRVLLSEVPSMAIEKVYIVNNTSLLQDEVLAHRLGLIPLQA 109
Query: 76 DEVVDRILYSRDCTCVD---FCSECSVEFTLDVKC-----VDDQTRHVT----TADLKST 123
D R+ T D + ++ + L V C +R +T +++ S
Sbjct: 110 D---PRLFDYPSSTAKDEDEVSDQDTLRYELKVTCTWNPQAPKDSRRITDMYRNSNVYSK 166
Query: 124 DARVVPVTSRNRDADMNEYGE------TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
D + VP+ R A++ G +DILI K+R GQE+ +A KG GK+HAK++
Sbjct: 167 DIKWVPI---GRQAELYPRGTEQLGVLENDILICKMRPGQEIHAFMHAIKGIGKDHAKFS 223
Query: 178 PTA 180
P A
Sbjct: 224 PVA 226
>gi|195386486|ref|XP_002051935.1| GJ24400 [Drosophila virilis]
gi|194148392|gb|EDW64090.1| GJ24400 [Drosophila virilis]
Length = 333
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 90/162 (55%), Gaps = 12/162 (7%)
Query: 29 SVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC 88
++AN+ RR+ ++E P+MAI+ V + N++++ DE +A R+GL+PL +D + Y +
Sbjct: 63 AIANAFRRLMLSEVPSMAIEKVYIYNNTSIIQDEVLAHRMGLLPLRADPRL--FAYRTEE 120
Query: 89 TCVDFCSECSVEFTLDVKCV--DDQTRHVTTAD-------LKSTDARVVPVTSRNRDADM 139
+ + ++E+ L VKC D ++ + D + S + +P + +
Sbjct: 121 STEQGTEQDTLEYELKVKCTRRKDASKDQSNFDDIYKNHKVYSGHLKWLPKGKQGQIYTE 180
Query: 140 NEYG-ETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
N G +DILI +LR G EL LR A KG GK+HAK++P A
Sbjct: 181 NSVGCIHEDILIAQLRPGHELDLRLIAVKGLGKDHAKFSPVA 222
>gi|323335178|gb|EGA76468.1| Rpc40p [Saccharomyces cerevisiae Vin13]
gi|323346326|gb|EGA80616.1| Rpc40p [Saccharomyces cerevisiae Lalvin QA23]
Length = 335
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 16/185 (8%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V+I+ L F + + + S+AN+ RR+ I+E P++A ++V N++V+ DE +A RI
Sbjct: 42 VNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHRI 101
Query: 69 GLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEFTLDVKCV---------DDQTRHVT 116
GL+PL D +L D D F E ++ +L+VKC D
Sbjct: 102 GLVPLKVDP---DMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYN 158
Query: 117 TADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
A + + D + P ++ AD DIL+ KLR GQE+ L+A+ G G +HAK
Sbjct: 159 NAHVYARDLKFEPQGRQSTTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAK 218
Query: 176 WNPTA 180
++P +
Sbjct: 219 FSPVS 223
>gi|6325367|ref|NP_015435.1| Rpc40p [Saccharomyces cerevisiae S288c]
gi|133369|sp|P07703.1|RPAC1_YEAST RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=RNA polymerases I and III subunit AC1; AltName:
Full=C37; AltName: Full=DNA-directed RNA polymerases I
and III 40 kDa polypeptide; Short=AC40; Short=C40
gi|172474|gb|AAA34999.1| RNA polymerase C-40 [Saccharomyces cerevisiae]
gi|914981|gb|AAB68080.1| Rpc40p: RNA Polymerases I and III 40 kD subunit (Swiss Prot.
accession number P07703) [Saccharomyces cerevisiae]
gi|151942887|gb|EDN61233.1| AC40 [Saccharomyces cerevisiae YJM789]
gi|256269060|gb|EEU04397.1| Rpc40p [Saccharomyces cerevisiae JAY291]
gi|285815633|tpg|DAA11525.1| TPA: Rpc40p [Saccharomyces cerevisiae S288c]
gi|323306842|gb|EGA60127.1| Rpc40p [Saccharomyces cerevisiae FostersO]
gi|349581913|dbj|GAA27070.1| K7_Rpc40p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296113|gb|EIW07216.1| Rpc40p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 335
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 16/185 (8%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V+I+ L F + + + S+AN+ RR+ I+E P++A ++V N++V+ DE +A RI
Sbjct: 42 VNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHRI 101
Query: 69 GLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEFTLDVKCV---------DDQTRHVT 116
GL+PL D +L D D F E ++ +L+VKC D
Sbjct: 102 GLVPLKVDP---DMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYN 158
Query: 117 TADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
A + + D + P ++ AD DIL+ KLR GQE+ L+A+ G G +HAK
Sbjct: 159 NAHVYARDLKFEPQGRQSTTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAK 218
Query: 176 WNPTA 180
++P +
Sbjct: 219 FSPVS 223
>gi|449461051|ref|XP_004148257.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cucumis sativus]
gi|449522768|ref|XP_004168398.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cucumis sativus]
Length = 391
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 102/203 (50%), Gaps = 31/203 (15%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ N + + DL +++++F + + ++AN+ RR+ I+E PTMAI+ V N++++ DE
Sbjct: 83 FRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILISEVPTMAIEKVLFANNTSIVQDE 142
Query: 63 FIASRIGLIPLTSDEVV------------DRILYSRDCTCVDFCSECSV----------- 99
+A R+GL+P+ D + + I++ C +V
Sbjct: 143 VLAHRLGLVPIRVDPRLFKYSDKDAPNENNTIVFRLHACCERGKPRLTVTSKALTWLPNG 202
Query: 100 -EFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD-DILIVKLRKGQ 157
EF L V D++ V+ + K+ + + +++ N G D DI++ +L GQ
Sbjct: 203 SEFPL----VSDKS--VSNSKPKTYTSFSCSQNTLSKEFSNNPIGPKDSDIILARLGPGQ 256
Query: 158 ELRLRAYAKKGFGKEHAKWNPTA 180
E+ L A+A KG GK HAKW+P A
Sbjct: 257 EIELEAHAVKGMGKTHAKWSPVA 279
>gi|393219179|gb|EJD04666.1| hypothetical protein FOMMEDRAFT_80006 [Fomitiporia mediterranea
MF3/22]
Length = 387
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 95/186 (51%), Gaps = 22/186 (11%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+++T L+ +V + + S+AN++RR IAE PT+AI+ V + N++V+ DE +A R+
Sbjct: 56 LNVTRLSQRSVDLDLIGVDASIANAIRRTLIAEVPTIAIESVYVWNNTSVIHDEVLAHRL 115
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV-------------DDQTRHV 115
GL+PL +D L+ D ++ F L+V+C D H+
Sbjct: 116 GLVPLN----LDPGLFEMREEGKDATDRSTLVFKLEVECKRKAGAPAESANPDDLYENHL 171
Query: 116 TTADLKSTDARVVPVTSRNRDADMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHA 174
TA + R P + + G T+ +I++ KLR GQ + + +A K GKEHA
Sbjct: 172 VTAGM----LRWEPQGEQADVPQLKPPGPTNPNIVLAKLRPGQVIDMECHAIKNVGKEHA 227
Query: 175 KWNPTA 180
KW+P A
Sbjct: 228 KWSPVA 233
>gi|190408037|gb|EDV11302.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Saccharomyces cerevisiae RM11-1a]
gi|207340297|gb|EDZ68691.1| YPR110Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259150260|emb|CAY87063.1| Rpc40p [Saccharomyces cerevisiae EC1118]
gi|323331346|gb|EGA72764.1| Rpc40p [Saccharomyces cerevisiae AWRI796]
Length = 335
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 16/185 (8%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V+I+ L F + + + S+AN+ RR+ I+E P++A ++V N++V+ DE +A RI
Sbjct: 42 VNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHRI 101
Query: 69 GLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEFTLDVKCV---------DDQTRHVT 116
GL+PL D +L D D F E ++ +L+VKC D
Sbjct: 102 GLVPLKVDP---DMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYN 158
Query: 117 TADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
A + + D + P ++ AD DIL+ KLR GQE+ L+A+ G G +HAK
Sbjct: 159 NAHVYARDLKFEPQGRQSTTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAK 218
Query: 176 WNPTA 180
++P +
Sbjct: 219 FSPVS 223
>gi|350403568|ref|XP_003486838.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Bombus impatiens]
Length = 505
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 32/187 (17%)
Query: 16 DENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTS 75
+ ++F + + AN+ RRV ++E PTMAI+ V + N++++ DE +A R+GL+PL +
Sbjct: 51 ERELEFDLIGYPVGFANAFRRVLLSEVPTMAIEKVYIVNNTSLIQDEVLAHRLGLVPLQA 110
Query: 76 DEVVDRILYSRDCTCVDFCSECS----VEFTLDVKC------------VDDQTRHVTTAD 119
D L+ + + E S + + L V C +D R+ ++
Sbjct: 111 DPR----LFEYPSSTIKNEDEVSDQDTLRYELKVSCTWNPQAPKDSRRTNDMYRN---SN 163
Query: 120 LKSTDARVVPVTSRNRDADMNEYGE------TDDILIVKLRKGQELRLRAYAKKGFGKEH 173
+ S D + VP+ R A++ G DDILI K+R GQE+ + +A KG GK+H
Sbjct: 164 VYSKDIKWVPI---GRQAELYPRGAEQLGVLEDDILICKMRPGQEIHVFMHAVKGIGKDH 220
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 221 AKFSPVA 227
>gi|255724476|ref|XP_002547167.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240135058|gb|EER34612.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 337
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 24/195 (12%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ N+ + IT++ + F + + S++N+ RR+ IAE P++A++ V + N++V+ DE
Sbjct: 38 FKNKFEIKITNMGERTGTFDLIHIDTSISNAFRRIMIAEVPSVAVETVYMFMNTSVIQDE 97
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFTLDVKCVDDQTRHVTTADL 120
+A RIGLIP D++ + + V+ F + ++ +LDV C + A
Sbjct: 98 VLAQRIGLIPWNISP--DKLSWVDESVDVNDRFTEDNTIVLSLDVTCTKN-----PNAPK 150
Query: 121 KSTDARVVPVTSR--NRDADMNEYGET-------------DDILIVKLRKGQELRLRAYA 165
+TD V+ S +D +G +ILI KLR GQE+ LRA+
Sbjct: 151 DATDPNVLYKNSNVYAKDLKFEPHGTQAEKFRDTPVVPCDPNILIAKLRPGQEISLRAHC 210
Query: 166 KKGFGKEHAKWNPTA 180
G G +HAK++P A
Sbjct: 211 ILGIGSDHAKFSPVA 225
>gi|365762578|gb|EHN04112.1| Rpc40p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 323
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 16/185 (8%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V+I+ L F + + + S+AN+ RR+ I+E P++A ++V N++V+ DE +A RI
Sbjct: 42 VNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHRI 101
Query: 69 GLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEFTLDVKCV---------DDQTRHVT 116
GL+PL D +L D D F E ++ +L+VKC D
Sbjct: 102 GLVPLKVDP---DMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYN 158
Query: 117 TADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
A + + D + P ++ AD DIL+ KLR GQE+ L+A+ G G +HAK
Sbjct: 159 NAHVYARDLKFEPQGRQSTTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAK 218
Query: 176 WNPTA 180
++P +
Sbjct: 219 FSPVS 223
>gi|336464897|gb|EGO53137.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Neurospora tetrasperma FGSC 2508]
Length = 378
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 94/178 (52%), Gaps = 23/178 (12%)
Query: 20 KFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EV 78
+F + + S+AN+ RR+ IA+ PT+AI+ + + N++V+ DE + R+GLIP T E
Sbjct: 76 QFSLIGVDASIANAFRRIMIADIPTLAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKEG 135
Query: 79 VDRIL--YSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK---------STDARV 127
+ L Y + T D+ +VE L VKC +++ + D K + D +
Sbjct: 136 LHNFLKWYKKGETPCDY---NTVELELKVKCENNENAPADSKDPKELYHNAHVYAKDIKF 192
Query: 128 VPVTSRNRDADM----NEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
VP + R A N T+ DIL+ K+R GQE+ L + KG G +HAK++P A
Sbjct: 193 VP---KGRQAKYFSGENAIRPTNPDILVAKMRPGQEIDLTMHMHKGVGSDHAKFSPVA 247
>gi|289742757|gb|ADD20126.1| RNA polymerase I and III subunit rPA40/rPC40 [Glossina morsitans
morsitans]
Length = 330
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 91/171 (53%), Gaps = 12/171 (7%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
++F + +AN+ RR+ ++E P+MAI+ V + N++++ DE +A R+GLIPL +D
Sbjct: 52 LEFDMVGVHPGIANAFRRLMLSEVPSMAIEKVYIHNNTSIIQDEVLAHRLGLIPLKADP- 110
Query: 79 VDRILYSRDCTCVDFCSECSVEFTLDVKC-----VDDQTRH---VTTADLKSTDARVVPV 130
R+ R + +++F L VKC V + + + S + +P
Sbjct: 111 --RLFEYRGDESDQGTEQDTLDFELKVKCSRRKDVKESSNFDSIYKNHKIYSGQIKWLPK 168
Query: 131 TSRNRDADMNEYGET-DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ + ++ G DDILI ++R G EL +R A KG GK+HAK++P A
Sbjct: 169 GKQAQIYSESDVGPIDDDILITQMRPGHELDIRLAAVKGIGKDHAKFSPVA 219
>gi|323302589|gb|EGA56396.1| Rpc40p [Saccharomyces cerevisiae FostersB]
Length = 323
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 16/185 (8%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V+I+ L F + + + S+AN+ RR+ I+E P++A ++V N++V+ DE +A RI
Sbjct: 42 VNISSLDARETNFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHRI 101
Query: 69 GLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEFTLDVKCV---------DDQTRHVT 116
GL+PL D +L D D F E ++ +L+VKC D
Sbjct: 102 GLVPLKVDP---DMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYN 158
Query: 117 TADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
A + + D + P ++ AD DIL+ KLR GQE+ L+A+ G G +HAK
Sbjct: 159 NAHVYARDLKFEPQGRQSTTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAK 218
Query: 176 WNPTA 180
++P +
Sbjct: 219 FSPVS 223
>gi|330834009|ref|YP_004408737.1| DNA-directed RNA polymerase subunit D [Metallosphaera cuprina Ar-4]
gi|329566148|gb|AEB94253.1| DNA-directed RNA polymerase, subunit D [Metallosphaera cuprina
Ar-4]
Length = 262
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 16/153 (10%)
Query: 28 LSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRD 87
L N++RR + P MA+D V + N++ L DE +A R+GLIP S E +D +
Sbjct: 22 LEFVNAVRRASMIYVPVMAVDEVYIVENNSPLYDEVLAHRLGLIPFDSREALDFYRRPEE 81
Query: 88 CT-CVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD 146
C C + C +C + ++V + Q V + D+++ D V+P++
Sbjct: 82 CIDCAENCEKCFTKAYIEVSAEESQV-MVYSKDIRTEDPNVIPISK-------------- 126
Query: 147 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
DI IV L K Q++ L + G+GKEHAK+NP
Sbjct: 127 DIPIVLLGKKQKISLEMRMRLGYGKEHAKFNPV 159
>gi|167044977|gb|ABZ09642.1| putative RNA polymerase Rpb3/RpoA insert domain protein [uncultured
marine crenarchaeote HF4000_APKG8G2]
Length = 214
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 27/171 (15%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
PS+ I D+ + +++ L AN+LRR+ + P AID V + NS+V+ DE IA
Sbjct: 17 PSIQILTSDDKKISIKLKGISLHYANALRRICLNGVPIFAIDTVDVIENSSVIPDEGIAH 76
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
+G+IPL ++ L D S V LD + ++ T+ VT+A+L+S D
Sbjct: 77 TLGMIPLKTE------LNGFD------ESNSRVILVLDSEAAEN-TKIVTSAELESKDQV 123
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
V P++ + I IV L GQ ++L AYA+ G G EHAKWN
Sbjct: 124 VKPISKQ--------------IPIVHLAPGQRIKLEAYARLGRGTEHAKWN 160
>gi|384248203|gb|EIE21688.1| insert subdomain of RNA polymerase alpha subunit [Coccomyxa
subellipsoidea C-169]
Length = 372
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 99/178 (55%), Gaps = 21/178 (11%)
Query: 18 NVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDE 77
+++F V + ++AN+LRR+ I+E PT+AI+ V + N+++++ E ++ R+GL+P+ D
Sbjct: 87 DMEFDVIGIDPAIANALRRILISEIPTVAIEHVYIINNTSIIACEVLSHRLGLVPIQVDP 146
Query: 78 VVDRILYSRDCTCVDFCSEC-SVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSR--- 133
+ +D + + +E S+ F LDV+C + V +KS R +P S
Sbjct: 147 NL-----LQDKSGEETATETNSIVFKLDVRCRREGDMMVNE-KVKSGQLRWLPNGSEMPE 200
Query: 134 --------NRDADMNEYGET---DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+++A + G DDIL+ K+R GQE+ L A+ +G G EHAKW+P A
Sbjct: 201 ETNCRYASSQEALLGPAGARLVHDDILLAKMRPGQEIVLEAHCVRGTGAEHAKWSPVA 258
>gi|299750875|ref|XP_001829899.2| RNA polymerase subunit [Coprinopsis cinerea okayama7#130]
gi|298409112|gb|EAU91821.2| RNA polymerase subunit [Coprinopsis cinerea okayama7#130]
Length = 383
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 26/188 (13%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V IT L+ ++F + + S+AN+ RR+ IAE PT+AI+ V + N++V+ DE +A RI
Sbjct: 87 VQITRLSQHTIEFDLVGVDASIANAFRRIMIAEVPTIAIEHVYVWDNTSVIVDEVLAHRI 146
Query: 69 GLIPLT-SDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV--DDQTRHVTTADLKSTDA 125
GL+PL + ++D D T D ++ F LDV C + + T D +
Sbjct: 147 GLVPLNVNPSIMDSRSPQNDPTDRD-----TLIFKLDVTCTRNPNAPKGSTNPDELYINH 201
Query: 126 RVVPVTSRNRDADMNEYGE-------------TDDILIVKLRKGQELRLRAYAKKGFGKE 172
V+ +RD + G+ +I++ KLR GQ + + +A KG GK+
Sbjct: 202 EVL-----SRDLVWSPVGQQAEVFEGCPPAPINPNIVLTKLRPGQAVNMELHAVKGVGKD 256
Query: 173 HAKWNPTA 180
HAK+ P A
Sbjct: 257 HAKFTPVA 264
>gi|330506856|ref|YP_004383284.1| DNA-directed RNA polymerase subunit D [Methanosaeta concilii GP6]
gi|328927664|gb|AEB67466.1| DNA-directed RNA polymerase subunit D [Methanosaeta concilii GP6]
Length = 264
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 20/169 (11%)
Query: 10 HITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIG 69
+ +L ++ +++ + + AN +RR ++E P +AID + L N++VL DE I RIG
Sbjct: 4 ELLELREDRIRYLLSGVSAAFANGIRRACMSEVPILAIDEINLYDNTSVLFDEQIGLRIG 63
Query: 70 LIPLTSDEVVDRILYSRDCTCVD-FCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
+PL +DE +D DC C C C V+F L + V + D++ TD V
Sbjct: 64 EVPLVADE-LDLFSQPEDCQCGGTGCPGCRVDFMLS----KEGPGMVYSEDIQFTDPGVR 118
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P D I +V L +G++L + YA K GKEH+KW
Sbjct: 119 PA--------------FDKIPLVILGEGEKLVMEGYATKRVGKEHSKWQ 153
>gi|195472829|ref|XP_002088701.1| GE11271 [Drosophila yakuba]
gi|194174802|gb|EDW88413.1| GE11271 [Drosophila yakuba]
Length = 333
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 102/194 (52%), Gaps = 24/194 (12%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y + + I ++ ++F + ++AN+ RR+ +++ P+MAI+ V + N++++ DE
Sbjct: 37 YKEKLHIKIVKNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDE 96
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSEC-SVEFTLDVKCV------DDQTRH- 114
+A R+GL+PL +D R+ R + +E ++EF L VKC DQ+
Sbjct: 97 VLAHRMGLLPLRADP---RLFAYRTEESTEAGTEQDTLEFELKVKCSRRRDAGKDQSNFD 153
Query: 115 --VTTADLKSTDARVVPVTSRNRDADMNEYGET------DDILIVKLRKGQELRLRAYAK 166
+ S + +P + + A + Y E+ DDILI +LR G EL LR A
Sbjct: 154 DIYKNHKVYSGHLKWLP---KGKQAQI--YNESAVNCIHDDILIAQLRPGHELDLRLVAV 208
Query: 167 KGFGKEHAKWNPTA 180
KG G++HAK++P A
Sbjct: 209 KGLGRDHAKFSPVA 222
>gi|354546273|emb|CCE43003.1| hypothetical protein CPAR2_206460 [Candida parapsilosis]
Length = 336
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 97/186 (52%), Gaps = 18/186 (9%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ IT++++ F + + S+AN+ RR+ IAE P++A++ V N++V+ DE +A RI
Sbjct: 44 IKITNVSERVANFDLIHIDTSIANAFRRIMIAEVPSVAVETVYSFMNTSVIQDEVLAHRI 103
Query: 69 GLIPLTSDE----VVDRILYSRDCTCVDFCSECSVEFTLDVKCVD---------DQTRHV 115
GL+PL D VD+ + D + + ++ +LDV C +
Sbjct: 104 GLVPLKVDPDSLTWVDKSVDEND----RYTEDNTIVLSLDVTCTKNPHAPKNSTNPNELY 159
Query: 116 TTADLKSTDARVVPVTSRNRDADMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHA 174
+++ + D + P S+ N TD +IL+ KLR GQE+ LRA+ G G +HA
Sbjct: 160 RNSNVYAKDLKFEPQGSQLEKYKDNPVVPTDPNILLAKLRPGQEISLRAHCILGVGADHA 219
Query: 175 KWNPTA 180
K++P A
Sbjct: 220 KFSPVA 225
>gi|147901420|ref|NP_001085237.1| polymerase (RNA) I polypeptide C, 30kDa [Xenopus laevis]
gi|47937458|gb|AAH72033.1| MGC78824 protein [Xenopus laevis]
Length = 347
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 99/188 (52%), Gaps = 24/188 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I + D+ ++F + + S+AN+ RR+ ++E PT+A++ V + N++++ DE +A R+
Sbjct: 51 IDIVKMEDDILEFDMVGIDASIANAFRRILLSEVPTVAVEKVYVYNNTSIIQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV---------DDQTRHVTTAD 119
GLIP+ +D R+ R + +++F L+VKC D
Sbjct: 111 GLIPIRADP---RLFEYRSADDAEGTEIDTLQFELNVKCTRNPRASKDCSDPNELYLNHK 167
Query: 120 LKSTDARVVPVTSRNRDADMNEYGETD-------DILIVKLRKGQELRLRAYAKKGFGKE 172
+ + + +P ++ ++ + ETD DILI +LR GQE+ + + KG GK+
Sbjct: 168 VYTGHMKWLPQGNQ-----VDLFPETDPPRPVHKDILIAQLRPGQEINVIMHCVKGIGKD 222
Query: 173 HAKWNPTA 180
HAK++P A
Sbjct: 223 HAKFSPVA 230
>gi|409077914|gb|EKM78278.1| hypothetical protein AGABI1DRAFT_121405 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 357
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 97/183 (53%), Gaps = 15/183 (8%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I L++ +++F + + S+AN+ RR+ IAE PT+ I+ V + N++V++DE ++ R+
Sbjct: 48 VEIQRLSNRSIEFDLVGVDASIANAFRRIMIAEVPTICIELVYIWNNTSVIADEVLSHRL 107
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQ--TRHVTTADLKSTDAR 126
GL+PL D + + + D ++ F LD+ C + + D +
Sbjct: 108 GLVPLNVDPALMQFKANLDSA----TDHNTIVFELDITCTRNPGAPKASENPDELYINHE 163
Query: 127 VVPVTSRNRDA--------DMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
V+ R + A + G T+ +I++ KLR GQ +R+ +A KG GK+HAK++
Sbjct: 164 VLSGHLRWKPAGDQLTVFEGLPAPGPTNPNIVLAKLRPGQSVRMELHAIKGVGKDHAKFS 223
Query: 178 PTA 180
P A
Sbjct: 224 PVA 226
>gi|88687066|emb|CAJ43894.1| RNA polymerase I subunit RPC40 [Trypanosoma brucei brucei]
Length = 337
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 82/172 (47%), Gaps = 13/172 (7%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E + +++ VAN RR+ + E P A D + +E N V+ DE +A RIGL+PL
Sbjct: 49 ETITSDMDNVSPPVANMFRRLMLTEVPAFAFDRILIEHNDGVVPDELLAHRIGLVPLAGP 108
Query: 77 EVVDRILYSRDCTCVDFCS---ECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSR 133
V + Y D V F + E + F LDV R V T + S + P+ +
Sbjct: 109 --VSSMQYITDSASVGFDNLDPERVLLFELDVTA----KRDVPTTSVYSGHLKWQPIAKQ 162
Query: 134 NRDADMNE----YGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
A +E + DI++ +L GQ L+LRA A KG G HAKW P A
Sbjct: 163 EELAARSEDDRVFLVHPDIVLTRLGPGQRLKLRAIAIKGIGAVHAKWTPVAA 214
>gi|195114368|ref|XP_002001739.1| GI17014 [Drosophila mojavensis]
gi|193912314|gb|EDW11181.1| GI17014 [Drosophila mojavensis]
Length = 333
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 16/177 (9%)
Query: 16 DENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTS 75
+ ++F + ++AN+ RR+ ++E P+MAI+ V + N++++ DE +A R+GL+PL +
Sbjct: 50 EHGLEFDLIGVYPAIANAFRRLMLSEVPSMAIEKVYIYNNTSIIQDEVLAHRMGLLPLRA 109
Query: 76 DEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV--DDQTRHVTTADLKSTDARV----VP 129
D + Y D + + ++E+ L VKC D ++ + D + +V +
Sbjct: 110 DPRL--FAYRTDESTDQGTEQDTLEYELKVKCTRRKDASKDQSNFDDIYRNHKVYSGHLK 167
Query: 130 VTSRNRDADMNEYGET------DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ + A + Y E+ +DILI +LR G EL LR A KG GK+HAK++P A
Sbjct: 168 WLPKGKQAQI--YSESSVGCIHEDILIAQLRPGHELDLRLIAVKGIGKDHAKFSPVA 222
>gi|352682847|ref|YP_004893371.1| DNA-directed RNA polymerase subunit D [Thermoproteus tenax Kra 1]
gi|350275646|emb|CCC82293.1| DNA-directed RNA polymerase subunit D [Thermoproteus tenax Kra 1]
Length = 281
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 19/170 (11%)
Query: 10 HITDLTDENVKFQ--VEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
H L +N++ + +E + S+ NS+RR I+E P A+D V + N++ + DE +A R
Sbjct: 3 HAKVLERDNLRLRAYIEGAKPSLVNSIRRAVISEVPVFAVDQVIIINNTSSMYDEMLAHR 62
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
IGLIPLT+ + + VD +EC+V TL V ++ R V DL S V
Sbjct: 63 IGLIPLTTPLGEFPKIEECESGLVD-PAECTVRLTLQVTA--EEARTVYAGDLISEHPGV 119
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
PV ++ IVKL KGQ + + AYA+ G +EHAKW
Sbjct: 120 KPVYP--------------EMPIVKLAKGQSISIEAYARLGRAREHAKWQ 155
>gi|303388073|ref|XP_003072271.1| RNA polymerase I and III subunit AC40 [Encephalitozoon intestinalis
ATCC 50506]
gi|303301410|gb|ADM10911.1| RNA polymerase I and III subunit AC40 [Encephalitozoon intestinalis
ATCC 50506]
Length = 305
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 21/175 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ IT+ + E ++F + + + S AN+LRR+ + PTMAI V L+ N +V DEFIA R+
Sbjct: 32 LRITEYSKEKLEFDLINVDCSFANALRRILCNDVPTMAIKDVFLKENESVFPDEFIAHRL 91
Query: 69 GLIPLTSD----EVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTD 124
GLIPL D E V+ + R+ S++F+LDVK + +V + D+K
Sbjct: 92 GLIPLEVDPEMFEFVEGEMNERN----------SLKFSLDVKNENKDVLNVYSDDIKW-- 139
Query: 125 ARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
+P+ ++ ++ + +L+ KL GQ++ K GK HAKW+P
Sbjct: 140 ---IPLGNQREMIKNAKF--SSRVLMFKLAHGQKISAEVVCTKNTGKTHAKWSPV 189
>gi|85690991|ref|XP_965895.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi GB-M1]
gi|19068462|emb|CAD24930.1| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
gi|449329785|gb|AGE96054.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi]
Length = 305
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 92/174 (52%), Gaps = 19/174 (10%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ IT+ + E ++F + + + S+AN+LRR+ +E PTMA+ + L+ N +V DEFIA R+
Sbjct: 32 IRITEYSSEKLEFDLINVDCSIANALRRILSSEVPTMAVRDIFLKENESVFPDEFIAHRL 91
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PL VD ++ +D S+ FTLDV+ + +V S D R
Sbjct: 92 GLVPLE----VDPEMFEFAGEELD--ERNSLRFTLDVRNESEGVLNVY-----SDDIRWN 140
Query: 129 PVTSRN---RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
PV S+ RD + +L+ +L +GQ++ K GK HAKW+P
Sbjct: 141 PVGSQREIFRDVKF-----SSRVLMFRLARGQKISAELVCTKNVGKVHAKWSPV 189
>gi|403419367|emb|CCM06067.1| predicted protein [Fibroporia radiculosa]
Length = 377
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 15/181 (8%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + L+ +V+F + + S+AN+ RR+ IAE P++AI+ V + N++V+ DE +A R+
Sbjct: 62 VSVKRLSQRSVEFDLIGVDASIANAFRRIMIAEVPSLAIENVYVWNNTSVIHDEVLAHRL 121
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQ--------TRHVTTADL 120
GL+PL D + Y D ++ F L+V C D+ +R +
Sbjct: 122 GLVPLNVDPSL--FDYREDVP----TDRNTLVFRLNVACEVDKSASKEKGASRKFLHELV 175
Query: 121 KSTDARVVPVTSRNR-DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
KS D +P + A +I++ KLR GQE+ + +A K GK HAKW+P
Sbjct: 176 KSGDLEWIPQGEQAAVFAGCTPAPTNKEIVLAKLRPGQEIEMELHAIKNVGKVHAKWSPV 235
Query: 180 A 180
A
Sbjct: 236 A 236
>gi|391342311|ref|XP_003745464.1| PREDICTED: uncharacterized protein LOC100901074 [Metaseiulus
occidentalis]
Length = 684
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 93/176 (52%), Gaps = 14/176 (7%)
Query: 15 TDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT 74
TDE+++F + + ++AN++RR+ IAE PTMA D + L N++ + D+ + +RIGL+P+
Sbjct: 388 TDEDLEFDIIGVDPAIANAIRRILIAEVPTMAADRITLINNTSFIHDKDLTNRIGLVPIR 447
Query: 75 SDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDD-QTRHVTT--------ADLKSTDA 125
VD L+ S+ +V F L ++C + Q +T + + S
Sbjct: 448 ----VDSRLFENRNPEQPASSQDTVVFELHIRCTKNLQAAQDSTLPKDIYSNSSVYSGHL 503
Query: 126 RVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
VP+ + N DDILI KLR GQE+ ++ KG GK HAK++P A
Sbjct: 504 TWVPLEGQEMLFAKNPPKPIHDDILIAKLRPGQEIDMKIEYLKGIGKTHAKFSPVA 559
>gi|426193914|gb|EKV43846.1| hypothetical protein AGABI2DRAFT_209410 [Agaricus bisporus var.
bisporus H97]
Length = 357
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 31/191 (16%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I L++ +++F + + S+AN+ RR+ IAE PT+ I+ V + N++V++DE ++ R+
Sbjct: 48 VEIQRLSNRSIEFDLVGVDASIANAFRRIMIAEVPTICIELVYIWNNTSVIADEVLSHRL 107
Query: 69 GLIPLTSDEVV-------------DRILYSRDCTC-----VDFCSECSVEFTLDVKCVDD 110
GL+PL D + + I++ D TC SE E ++ + +
Sbjct: 108 GLVPLNVDPALMQFKANLDSATDHNTIVFELDITCTRNPGAPKVSENPDELYINHEVLSG 167
Query: 111 QTRHVTTAD-LKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGF 169
R D L + P MN +I++ KLR GQ +R+ +A KG
Sbjct: 168 HLRWKPAGDQLTVFEGLPAP-------GPMNP-----NIVLAKLRPGQSVRMELHAIKGV 215
Query: 170 GKEHAKWNPTA 180
GK+HAK++P A
Sbjct: 216 GKDHAKFSPVA 226
>gi|308508009|ref|XP_003116188.1| hypothetical protein CRE_09265 [Caenorhabditis remanei]
gi|308251132|gb|EFO95084.1| hypothetical protein CRE_09265 [Caenorhabditis remanei]
Length = 366
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 89/183 (48%), Gaps = 21/183 (11%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
++F + E +AN+LRRV IAE PTMA++ + L N++V+ DE + R+GL+PL D
Sbjct: 68 LEFDITHIEAPIANALRRVLIAEVPTMALEKIYLYQNTSVIQDEVLCHRLGLLPLCVDPR 127
Query: 79 VDRILYSRDCTCVDFCSECSVE----------FTLDVKCVDDQTRHVTTADLK------- 121
+ + + +C E F ++V C ++ + D K
Sbjct: 128 GFQFPTEKVVGINEKGVDCDEEPAGDATRNLIFKINVSCTKNRNALPNSTDPKTLYHHSS 187
Query: 122 --STDARVVPVTSR--NRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
S VP+ + N TDDIL+ KLR GQE+ +A KG G++HAK++
Sbjct: 188 VYSGSFAWVPIGDQKSNYTDSTTPRMVTDDILVAKLRPGQEIEASCHAVKGIGRDHAKFS 247
Query: 178 PTA 180
P A
Sbjct: 248 PVA 250
>gi|351707955|gb|EHB10874.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Heterocephalus glaber]
Length = 346
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 100/187 (53%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ + +++F L V+C TR+ A S+D +
Sbjct: 111 GLIPIHADP---RLFEFRNEGDEEGTEIDTLQFRLQVRC----TRNPHAAK-DSSDPNEL 162
Query: 129 PVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEH 173
V + AD+ G +DILI +LR GQE+ L + KG GK+H
Sbjct: 163 YVNHKVYTRHMTWVPLGNQADVFPEGMIRPVHNDILIAQLRPGQEIDLLMHCVKGIGKDH 222
Query: 174 AKWNPTA 180
AK++P A
Sbjct: 223 AKFSPVA 229
>gi|401623159|gb|EJS41266.1| rpc40p [Saccharomyces arboricola H-6]
Length = 335
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 26/190 (13%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V+I+ L F + + S+AN+ RR+ I+E P++A ++V N++V+ DE +A RI
Sbjct: 42 VNISSLDAREANFDLMKIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHRI 101
Query: 69 GLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
GL+PL D +L D D F E +V +L+VKC TR+ A STD
Sbjct: 102 GLVPLKVDP---DMLTWVDSNLPDDEKFTDENTVVLSLNVKC----TRN-PDAPKGSTDP 153
Query: 126 RVVPVTSR--NRDADMNEYGETD-------------DILIVKLRKGQELRLRAYAKKGFG 170
R + + RD G DIL+ KLR GQE+ L+A+ G G
Sbjct: 154 RELYNNAHVYARDLKFEPQGRQSTTFANCPVVPADPDILLAKLRPGQEILLKAHCILGIG 213
Query: 171 KEHAKWNPTA 180
+HAK++P +
Sbjct: 214 GDHAKFSPVS 223
>gi|339521959|gb|AEJ84144.1| Polr1c protein [Capra hircus]
Length = 346
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 31/191 (16%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE P MA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDSAIANAFRRILLAEVPAMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQ----------------- 111
GLIP+ +D R+ R+ +++F L V+C +
Sbjct: 111 GLIPIHADP---RLFEYRNQGDEGGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHR 167
Query: 112 --TRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGF 169
TRH+T L S A R DDILI +LR GQE+ L + KG
Sbjct: 168 VYTRHMTWVPLGSQAALFPEGAIRPVH---------DDILIAQLRPGQEIDLLMHCVKGI 218
Query: 170 GKEHAKWNPTA 180
GK+HAK++P A
Sbjct: 219 GKDHAKFSPVA 229
>gi|378754855|gb|EHY64883.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Nematocida sp.
1 ERTm2]
Length = 271
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 16/164 (9%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
+ F+V E SV N+LRR I++TP++A+ WV + N TV++DE ++ R+GLIP+ +D
Sbjct: 20 LSFRVNQIEASVLNALRRTIISDTPSIAVHWVYIRENETVMADEILSHRLGLIPILADSS 79
Query: 79 VDRILYSRDCT--CVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRD 136
+ + + + E S++ L+V+ D+ V +S D ++V T
Sbjct: 80 TLKNIVRSEVLDPLAELTDENSIKMELNVENTTDKVLTV-----RSNDIKIVSNTKTTLK 134
Query: 137 ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+++I +L G+ + + A G G+EHAKW PT+
Sbjct: 135 ---------QNVIITRLAPGKRIECKMLAVVGTGREHAKWMPTS 169
>gi|254574330|ref|XP_002494274.1| RNA polymerase subunit, common to RNA polymerase I and III
[Komagataella pastoris GS115]
gi|238034073|emb|CAY72095.1| RNA polymerase subunit, common to RNA polymerase I and III
[Komagataella pastoris GS115]
gi|328353904|emb|CCA40301.1| DNA-directed RNA Polymerase III subunit C5 [Komagataella pastoris
CBS 7435]
Length = 335
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 18/178 (10%)
Query: 15 TDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT 74
TD + F + + S+AN+ RR+ I+E P+++++ V + NS+V+ DE +ASRIGL+PL
Sbjct: 48 TDRTLNFDLIHIDTSIANAFRRIMISEVPSVSVEHVYINNNSSVIQDEVLASRIGLVPLQ 107
Query: 75 SD----EVVDRILYSRDCTCVDFCSECSVEFTLDVKCV---------DDQTRHVTTADLK 121
D VDR + + F E +V +L+V C +D + +
Sbjct: 108 IDPDRLSWVDRGVEESE----RFTDENTVVISLNVACTKNPHPAKNNNDPENLYRNSIVY 163
Query: 122 STDARVVPVTSRNRD-ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
S D + P + AD DI+I KLR GQE+ L+A+ G G +HAK++P
Sbjct: 164 SRDLKFEPQGRQVETFADSPVVAADPDIVIAKLRPGQEISLKAHCILGLGSDHAKFSP 221
>gi|219852957|ref|YP_002467389.1| DNA-directed RNA polymerase subunit D [Methanosphaerula palustris
E1-9c]
gi|219547216|gb|ACL17666.1| RNA polymerase insert [Methanosphaerula palustris E1-9c]
Length = 273
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 21/161 (13%)
Query: 20 KFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVV 79
++ + S N++RR +E P +AI+ +++ N++ L DE +A RIGL+PL ++
Sbjct: 14 RYTLTGVSPSFINAIRRAMCSEVPKLAIEDIKIYDNTSALFDEMLAHRIGLVPLKTNS-- 71
Query: 80 DRILYSRDCTCVDF-CSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDAD 138
D + + CTC C CS +TL V + V + DL +D VPV +
Sbjct: 72 DLYVSADRCTCEGAGCDRCSTMYTLSV----EGPGMVYSRDLIPSDPEAVPVDEK----- 122
Query: 139 MNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
I IVKL KGQ++ + A A+ GK HAKW PT
Sbjct: 123 ---------IPIVKLEKGQKVVIEARAEMNLGKVHAKWQPT 154
>gi|388858416|emb|CCF48010.1| probable Rpc40-40 kD subunit of DNA-directed RNA polymerases I and
III [Ustilago hordei]
Length = 401
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 98/183 (53%), Gaps = 14/183 (7%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
+V +T L+D + +F + + S+AN++RRV +AE PT+AI+ V + N++++ DE ++ R
Sbjct: 97 NVIVTRLSDVSCEFDLIGVDASIANAVRRVLMAEVPTVAIEHVYIWNNTSIIQDEVLSHR 156
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKC---------VDDQTRHVTTA 118
+GL+PL + D++L D + +V F+L KC D +
Sbjct: 157 LGLVPLAINP--DKVLIRMPGDNADDSN--TVVFSLKAKCERNPNAARGESDPDKLYIGH 212
Query: 119 DLKSTDARVVPVTSRNRD-ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
++ S P ++ D AD ILI KLR GQEL L + +KG G++HAK++
Sbjct: 213 NVYSEQLVWDPKGDQDEDFADAPPKPVHAKILIAKLRPGQELDLELHCEKGIGRDHAKFS 272
Query: 178 PTA 180
P A
Sbjct: 273 PVA 275
>gi|366988647|ref|XP_003674091.1| hypothetical protein NCAS_0A11520 [Naumovozyma castellii CBS 4309]
gi|342299954|emb|CCC67710.1| hypothetical protein NCAS_0A11520 [Naumovozyma castellii CBS 4309]
Length = 335
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 99/196 (50%), Gaps = 26/196 (13%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ N V I+ L + F + + + S+AN+ RR+ I+E P +A ++V N++V+ DE
Sbjct: 36 FRNTFKVEISSLNEREANFDLINIDTSIANAFRRIMISEVPAVAAEYVYFLNNTSVIQDE 95
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEFTLDVKCVDDQTRHVTTAD 119
+A RIGLIPL D +L D D F ++ TL+VKC TR+ A
Sbjct: 96 VLAHRIGLIPLKVDP---DLLTWVDNELPDEEKFNDTNTIVLTLNVKC----TRN-PDAP 147
Query: 120 LKSTDARVVPVTSRNRDADMN---------EYGET------DDILIVKLRKGQELRLRAY 164
+TD +++ S +D+ + T DIL+ KLR GQE+ LRA+
Sbjct: 148 KDATDPKILYRNSSVYASDLKFEPQGKQIETFAGTPVVPCDQDILLAKLRPGQEISLRAH 207
Query: 165 AKKGFGKEHAKWNPTA 180
G G +HAK++P +
Sbjct: 208 CILGTGGDHAKFSPVS 223
>gi|344253232|gb|EGW09336.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Cricetulus
griseus]
Length = 282
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 19/165 (11%)
Query: 29 SVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC 88
++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+GLIP+ +D R+ R+
Sbjct: 7 AIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADP---RLFEYRNP 63
Query: 89 TCVDFCSECSVEFTLDVKCVDDQTRHVTTAD---------LKSTDARVVPVTSRNRDADM 139
+ +++F L V+C + ++D + + VP+ ++ AD+
Sbjct: 64 GEEEGTEIDTLQFRLQVRCTKNPNAAKDSSDPNELYVNHKVYTRHMTWVPLGNQ---ADV 120
Query: 140 NEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
G DDILI +LR GQE+ L + KG GK+HAK++P A
Sbjct: 121 FPEGTIRPVHDDILIAQLRPGQEIDLVMHCVKGIGKDHAKFSPVA 165
>gi|401840259|gb|EJT43153.1| RPC40-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 326
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 94/185 (50%), Gaps = 16/185 (8%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V+I+ L + F + + + S+AN+ RR+ I+E P +A ++V N++V+ DE +A RI
Sbjct: 42 VNISSLDEREANFDLINIDASIANAFRRIMISEVPCVAAEYVYFFNNTSVIQDEVLAHRI 101
Query: 69 GLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEFTLDVKCV---------DDQTRHVT 116
GL+PL D +L D + D F E ++ +L+VKC D
Sbjct: 102 GLVPLKVDP---DMLTWVDSSLPDDEKFTDENTIVLSLNVKCTRNPDAPKDCTDPKELYN 158
Query: 117 TADLKSTDARVVPVTSRNRDADMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHAK 175
A + + D + P ++ D DIL+ KLR GQE+ L+A+ G G +HAK
Sbjct: 159 NAHVYARDLKFEPQGRQSTTFAACSVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAK 218
Query: 176 WNPTA 180
++P +
Sbjct: 219 FSPVS 223
>gi|452821148|gb|EME28182.1| DNA-directed RNA polymerase III subunit C5 [Galdieria sulphuraria]
Length = 300
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 98/192 (51%), Gaps = 23/192 (11%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ NQ + + ++E + ++ + N+LRR+ AE PTMAI++V + N++V+ DE
Sbjct: 42 FLNQLQLRLVKNSEEEIILELVGVAAPLINALRRILFAEVPTMAIEYVLISDNTSVIHDE 101
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDD-QTRH------- 114
+A R+GLIP+ +D D R + ++ L V+C + Q R
Sbjct: 102 ILAHRLGLIPIQADP--DGFQDYRKGE--EPRENNTIVLKLQVECKQNPQARPGAEPEEL 157
Query: 115 VTTADLKSTDARVVPVTSRNRDADMNEYGE------TDDILIVKLRKGQELRLRAYAKKG 168
+++ S D P+ ++ + ++G+ ++DILI KLR Q + L A KG
Sbjct: 158 YINSNVYSRDLVWEPLGNQ-----LEKFGKNGIRPVSEDILIAKLRPKQRIELEARCIKG 212
Query: 169 FGKEHAKWNPTA 180
GKEHAKW+P A
Sbjct: 213 IGKEHAKWSPVA 224
>gi|392573616|gb|EIW66755.1| hypothetical protein TREMEDRAFT_34640 [Tremella mesenterica DSM
1558]
Length = 347
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 91/181 (50%), Gaps = 12/181 (6%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + LT ++F + + S+AN+LRRV IAE PT+AI+ V + N++++ DE + R+
Sbjct: 50 VSLQRLTPSTLEFDLVGVDASIANALRRVLIAEVPTVAIEDVYVWNNTSIMQDEVLCHRL 109
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKC--------VDDQTRHVTTADL 120
GL+PL D R + R +V F L VKC D R +D+
Sbjct: 110 GLVPLRIDP---REMIFRANPNAGALDTDTVVFQLRVKCDRQPGTQGETDPKRKYWDSDV 166
Query: 121 KSTDARVVPVTSRNRDADMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
+ P ++ E D DIL+ KLR GQ + L +A+KG G +HAK++P
Sbjct: 167 YTGMLEWEPAGAQKTKWKRKEPKPVDPDILLCKLRPGQLIDLTCFARKGTGADHAKFSPV 226
Query: 180 A 180
A
Sbjct: 227 A 227
>gi|50740586|ref|XP_419502.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 2 [Gallus gallus]
Length = 346
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 95/177 (53%), Gaps = 17/177 (9%)
Query: 16 DENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTS 75
D ++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+GLIP+ +
Sbjct: 58 DGVLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRA 117
Query: 76 DEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTAD---------LKSTDAR 126
D R+ R+ + +++F L +KC + ++D + S
Sbjct: 118 DP---RLFEYRNQGDEEGTEIDTLQFQLKIKCSRNPQAAKESSDPNELYFNHKVYSKHMT 174
Query: 127 VVPVTSRN---RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
VP+ ++ DAD DDILI LR GQE+ + + KG GK+HAK++P A
Sbjct: 175 WVPLGNQTDLFPDADFRPV--HDDILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVA 229
>gi|270010836|gb|EFA07284.1| hypothetical protein TcasGA2_TC014519 [Tribolium castaneum]
Length = 335
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 98/177 (55%), Gaps = 16/177 (9%)
Query: 15 TDEN-VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPL 73
++EN ++F + +AN+ RR+ +++ PTMAI+ V + N++++ DE +A R+GLIPL
Sbjct: 50 SEENELEFDLIGIHPFLANTFRRLMLSDVPTMAIEKVHILNNTSIIQDEVLAHRLGLIPL 109
Query: 74 TSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVD--DQTRHVTTAD-------LKSTD 124
+D R+ + + + ++EF L +KC + D ++ A+ + S
Sbjct: 110 KADP---RLFEMKTDPTAEGTEQDTLEFALKIKCTNNKDSSKDSLRAEDMYKNNNVYSKH 166
Query: 125 ARVVPV-TSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ VP+ + R +D+ DILI K+R G EL L+ A K G++HAK++P A
Sbjct: 167 IKWVPIGKQKERFSDVGPIHP--DILIAKMRPGHELDLKLLAVKSNGRDHAKFSPVA 221
>gi|410929907|ref|XP_003978340.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Takifugu rubripes]
Length = 351
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 11/183 (6%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ + L + ++F + + ++ N+ RR+ +AE PTMAI+ V + N++++ DE +A R+
Sbjct: 52 IDLMHLDESQMEFDMMGVDAAITNAFRRILLAEVPTMAIEKVFIYNNTSIVQDEVLAHRL 111
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSEC-SVEFTLDVKCVDDQTRHVTTADLK------ 121
GLIP+ +D + S D + SE +++ L + C + ++D +
Sbjct: 112 GLIPIKADPRLFEYRNSGDEATENEGSEIDTIQLQLKISCSRNPASSKDSSDPRELYLNH 171
Query: 122 ---STDARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
S D VP+ ++ G DILI +LR GQEL + + KG GK+HAK++
Sbjct: 172 MVYSKDIHWVPIGNQADVFANCSIGPVHGDILIAQLRPGQELDIIMHCIKGIGKDHAKFS 231
Query: 178 PTA 180
P A
Sbjct: 232 PVA 234
>gi|194766065|ref|XP_001965145.1| GF21532 [Drosophila ananassae]
gi|190617755|gb|EDV33279.1| GF21532 [Drosophila ananassae]
Length = 333
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 22/180 (12%)
Query: 16 DENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTS 75
++ ++F + ++AN+ RR+ +++ P+MAI+ V + N++++ DE +A R+GL+PL +
Sbjct: 50 EDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRMGLLPLRA 109
Query: 76 DEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV------DDQTRH---VTTADLKSTDAR 126
D + Y + + + ++EF L VKC DQ+ + S +
Sbjct: 110 DPRL--FAYRTEESTETGTEQDTLEFELKVKCTRRKDAGKDQSNFDDIYKNHKVYSGHLK 167
Query: 127 VVPVTSRNRDADMNEYGET------DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+P + + A + Y ET DDILI +LR G EL LR A KG G++HAK++P A
Sbjct: 168 WLP---KGKQAQI--YTETGVGCIHDDILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVA 222
>gi|125984360|ref|XP_001355944.1| GA17664 [Drosophila pseudoobscura pseudoobscura]
gi|54644262|gb|EAL33003.1| GA17664 [Drosophila pseudoobscura pseudoobscura]
Length = 333
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 99/178 (55%), Gaps = 18/178 (10%)
Query: 16 DENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTS 75
++ ++F + ++AN+ RR+ ++E P+MAI+ V + N++++ DE +A R+GL+PL +
Sbjct: 50 EDGLEFDMIGVYPAIANAFRRLMLSEVPSMAIEKVYIYNNTSIIQDEVLAHRMGLLPLKA 109
Query: 76 DEVVDRILYSRDCTCVDFCSEC-SVEFTLDVKCV--DDQTRHVTTADLKSTDARV----V 128
D R+ R + +E ++E+ L VKC D ++ + D + +V +
Sbjct: 110 DP---RLFAYRTEESGEAGTEQDTLEYELKVKCTRRKDASKDQSNFDDIYKNHKVYSGHL 166
Query: 129 PVTSRNRDADMNEYGET------DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ + A + Y E+ +DILI +LR G EL LR A KG GK+HAK++P A
Sbjct: 167 KWLPKGKQAQI--YSESMVNCIHEDILIAQLRPGHELDLRLVAVKGLGKDHAKFSPVA 222
>gi|342319511|gb|EGU11459.1| Hypothetical Protein RTG_02619 [Rhodotorula glutinis ATCC 204091]
Length = 785
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 94/182 (51%), Gaps = 13/182 (7%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + L+ ++F + + SVAN++RR+ IAE PT+A++ V + N++++ DE +A R+
Sbjct: 76 VQVNSLSPTALEFDLVGVDASVANAIRRIVIAEVPTVAVENVYVWNNTSIIQDEVLAQRL 135
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIPL D + + D D +V F+L +C + D + V
Sbjct: 136 GLIPLAIDPRKLDMKKTPDEPPTDL---NTVVFSLIARCERRKDVKKGETDPHKIWSGVE 192
Query: 129 PVTSR----NRDADMNEYGE------TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
++S +R +G+ DDIL+ K+R GQE+ + KG GK+HAKW+P
Sbjct: 193 VLSSNLSFSSRGGQDELFGDRPPKPAIDDILVAKMRGGQEIVAELHCVKGIGKDHAKWSP 252
Query: 179 TA 180
A
Sbjct: 253 VA 254
>gi|225562812|gb|EEH11091.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
capsulatus G186AR]
Length = 380
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 94/179 (52%), Gaps = 19/179 (10%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + ++AN+ RR+ IAE P++AI+ V + N++V+ DE +A R+GL+PLT S E +
Sbjct: 66 FSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGI 125
Query: 80 DRILYSRDCT--CVDFCSECS----VEFTLDVKCV---------DDQTRHVTTADLKSTD 124
+ + + R T D SE + V L+V+C DD + A + + D
Sbjct: 126 NWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASANEDDPQKRYNHAHVYAKD 185
Query: 125 ARVVPVTSRN---RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
PV + ++ D DIL+ KLR GQ++ + + KG G +HAK++P A
Sbjct: 186 ITFHPVGRQETYFQEPDGVIRSANPDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVA 244
>gi|224047705|ref|XP_002195566.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Taeniopygia guttata]
Length = 346
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 96/177 (54%), Gaps = 17/177 (9%)
Query: 16 DENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTS 75
++ ++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+GLIP+ +
Sbjct: 58 EDALEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRA 117
Query: 76 DEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTAD---------LKSTDAR 126
D R+ R+ + +++F L +KC + ++D + S
Sbjct: 118 DP---RLFEYRNQGDQEGTEIDTLQFQLKIKCKRNPQAAKESSDPDELYFNHKVYSKHMT 174
Query: 127 VVPVTSRN---RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
VP+ ++ DAD DDILI LR GQE+ + + KG GK+HAK++P A
Sbjct: 175 WVPLGNQTDLFPDADFRPV--HDDILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVA 229
>gi|240279628|gb|EER43133.1| DNA-directed RNA polymerase I and III [Ajellomyces capsulatus H143]
gi|325092757|gb|EGC46067.1| DNA-directed RNA polymerase I and III [Ajellomyces capsulatus H88]
Length = 380
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 19/179 (10%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + ++AN+ RR+ IAE P++AI+ V + N++V+ DE +A R+GL+PLT S E +
Sbjct: 66 FSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGI 125
Query: 80 DRILYSRDCT------CVDFCSECSVEFTLDVKCV---------DDQTRHVTTADLKSTD 124
+ + + R T + +V L+V+C DD + A + + D
Sbjct: 126 NWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASANEDDPQKRYNHAHVYAKD 185
Query: 125 ARVVPVTSRN---RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
PV + ++ D DIL+ KLR GQ++ + + KG G +HAK++P A
Sbjct: 186 ITFHPVGRQETYFQEPDGVIRSANPDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVA 244
>gi|154279942|ref|XP_001540784.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Ajellomyces capsulatus NAm1]
gi|150412727|gb|EDN08114.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Ajellomyces capsulatus NAm1]
Length = 380
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 94/179 (52%), Gaps = 19/179 (10%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + ++AN+ RR+ IAE P++AI+ V + N++V+ DE +A R+GL+PLT S E +
Sbjct: 66 FSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGI 125
Query: 80 DRILYSRDCT--CVDFCSECS----VEFTLDVKCV---------DDQTRHVTTADLKSTD 124
+ + + R T D SE + V L+V+C DD + A + + D
Sbjct: 126 NWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASANEDDPQKRYNHAHVYAKD 185
Query: 125 ARVVPVTSRN---RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
PV + ++ D DIL+ KLR GQ++ + + KG G +HAK++P A
Sbjct: 186 ITFHPVGRQETYFQEPDGVIRSANPDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVA 244
>gi|341888283|gb|EGT44218.1| hypothetical protein CAEBREN_24695 [Caenorhabditis brenneri]
Length = 365
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 21/183 (11%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
++F + E +AN+LRR+ +AE PTMA++ + L N++V+ DE + R+GL+PL D
Sbjct: 67 LEFDIIRIEAPIANALRRILLAEVPTMALEKIYLYQNTSVIQDEVLCHRLGLLPLRVDPR 126
Query: 79 VDRILYSRDCTCVDFCSECSVE----------FTLDVKCVDDQTRHVTTADLK------S 122
+ + + +C E F ++V C ++ T D K S
Sbjct: 127 AFQFPTEKVVGINEKGVDCDEEPEGDPTRNLIFKINVACTKNRNAANGTTDPKQLYHHSS 186
Query: 123 TDARV---VPVTSRNRDADMNEYGE--TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
+R +P+ ++ + +DDIL+ KLR GQE+ +A KG G++HAK++
Sbjct: 187 VYSRAFEWIPIGNQKEGYTKQNKPKMVSDDILVAKLRPGQEIEASCHAVKGIGRDHAKFS 246
Query: 178 PTA 180
P A
Sbjct: 247 PVA 249
>gi|171696332|ref|XP_001913090.1| hypothetical protein [Podospora anserina S mat+]
gi|170948408|emb|CAP60572.1| unnamed protein product [Podospora anserina S mat+]
Length = 372
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 93/181 (51%), Gaps = 26/181 (14%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTS--DEV 78
F + + S+AN+ RR+ IA+ PT+AI+ V + N++V+ DE +A R+GLIP T + +
Sbjct: 66 FSLIGIDASIANAFRRIMIADVPTLAIENVFVWNNTSVIQDEVLAHRLGLIPFTGGREGL 125
Query: 79 VDRILYSRDCTCVDFCSEC----SVEFTLDVKCVD---------DQTRHVTTADLKSTDA 125
D + + R D +EC +V L+VKC D T+ A + + D
Sbjct: 126 TDFLKWYRKPANGD-PAECKDFNTVALELNVKCEHNENADPNETDPTKLYHHAHVYAKDI 184
Query: 126 RVVPVTSRNRDADMNEYGE------TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
P+ R D GE DILI KLR GQE+ ++ + KG G +HAK++P
Sbjct: 185 VFKPI---GRQVDYFS-GEDIIRPVNPDILIAKLRPGQEINVQMHMHKGVGSDHAKFSPV 240
Query: 180 A 180
A
Sbjct: 241 A 241
>gi|167535426|ref|XP_001749387.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772253|gb|EDQ85908.1| predicted protein [Monosiga brevicollis MX1]
Length = 363
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 88/172 (51%), Gaps = 13/172 (7%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
++F + + ++ N++RR+ IA+TPTMAI+ V + N+++L DE A R+GLIP+ +D
Sbjct: 61 LEFDIIGLDAAIVNTIRRILIADTPTMAIESVYIFNNTSMLPDELFAHRLGLIPIKADP- 119
Query: 79 VDRILYSRDCTCVDFCSECSVEFTLDVKCVD------DQTRH---VTTADLKSTDARVVP 129
R R ++ F L C D T A + S D P
Sbjct: 120 --RHFTYRADDGGQPTDANTIVFNLKRVCTKKPNAPADATNPEDLYENAVIYSRDLEWAP 177
Query: 130 VTSRNRDADMNEYGET-DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ + N + DDI+I+K+R GQE+ ++ + +KG GK HAKW+P A
Sbjct: 178 QGQQEQVFGKNGFSVVYDDIVIMKMRPGQEVNMQLFCEKGVGKTHAKWSPVA 229
>gi|449283222|gb|EMC89903.1| DNA-directed RNA polymerases I and III subunit RPAC1, partial
[Columba livia]
Length = 323
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 94/174 (54%), Gaps = 17/174 (9%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+GLIP+ +D
Sbjct: 38 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADP- 96
Query: 79 VDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTAD---------LKSTDARVVP 129
R+ R+ + +++F L +KC + ++D + S VP
Sbjct: 97 --RLFEYRNQGDEEGTEIDTLQFQLKIKCSRNPQAAKESSDPNELYFNHKVYSKHMTWVP 154
Query: 130 VTSRN---RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ ++ DAD DDILI LR GQE+ + + KG GK+HAK++P A
Sbjct: 155 LGNQTDLFPDADFRPV--HDDILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVA 206
>gi|443923219|gb|ELU42493.1| ribonuclease H [Rhizoctonia solani AG-1 IA]
Length = 1023
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 96/190 (50%), Gaps = 14/190 (7%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
+P+ + V + DE V F + + S+AN+ RR+ IAE PT+AI+ V + N++V+
Sbjct: 717 LPHFQRLHVEVRGADDEAVDFDLVGVDASIANAFRRILIAEVPTVAIENVYIWNNTSVIQ 776
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQ--TRHVTTA 118
DE +A R+GL+P+ +D L + V ++ F L V C + + T
Sbjct: 777 DEVLAHRLGLVPIRADPA----LLDFPDSAVGPTDRNTLVFKLSVTCSRNPGVPKDETDP 832
Query: 119 DLKSTDARVVP--VTSRNRDADMNEYG------ETDDILIVKLRKGQELRLRAYAKKGFG 170
+ +A V+ + +N++G IL+ KLR GQEL + + KG G
Sbjct: 833 AVLYKNANVLSGHMEWNGVGEQVNDFGNNPPRPHNPKILLAKLRPGQELEMELHCVKGVG 892
Query: 171 KEHAKWNPTA 180
++HAK++P A
Sbjct: 893 QDHAKFSPVA 902
>gi|402582559|gb|EJW76504.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Wuchereria bancrofti]
Length = 299
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 19/181 (10%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
++F + E +AN++RRV IAE PT+AI+ V L N++++ DE ++ R GL+P+ +D
Sbjct: 3 LEFDLVGVEAPIANAIRRVLIAELPTLAIEKVYLYQNTSIIPDEVLSHRFGLLPIKADPR 62
Query: 79 VDRILYSRDCTCVDFCSECSVE----------FTLDVKCVDDQTRHVTTADLK------- 121
+ ++ + + +C+ E F + V C + T + K
Sbjct: 63 LFKMPLTPVIGIDESGVDCNEEPAGDPTRNLIFEIKVTCSRNPNALKTATNPKEIYENAF 122
Query: 122 --STDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
S + +P+ ++ DDIL+ +LR GQE+ R + KG G++HAK++P
Sbjct: 123 VYSNSFKWIPIGDQSTSLPYPPAMVHDDILVAQLRPGQEIEARCHCLKGLGRDHAKFSPV 182
Query: 180 A 180
A
Sbjct: 183 A 183
>gi|345566662|gb|EGX49604.1| hypothetical protein AOL_s00078g93 [Arthrobotrys oligospora ATCC
24927]
Length = 353
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 96/193 (49%), Gaps = 15/193 (7%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ + I D + +F + + SVAN+ RR+ I+E PT+AI+ V + N++++ DE
Sbjct: 45 FKKNSKIDIHKANDLDYEFDLIGVDASVANAFRRILISEVPTLAIETVFVHNNTSIVQDE 104
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSEC----SVEFTLDVKCVDDQTRHVTTA 118
+A R+GL+PL D+ + L R + + +E +V TL V C + T
Sbjct: 105 VLAQRLGLVPLRGDKKGFQQLRWRKKSPDEPAAEATDFNTVVMTLKVACTRNHATPNTET 164
Query: 119 DL------KSTDARVVPVTSRNRDAD-MNEYGE----TDDILIVKLRKGQELRLRAYAKK 167
D S AR + + R + + GE DIL+ KLR GQE+ L +
Sbjct: 165 DPSKLYFNSSVYARDIKFAPQGRQSSWFSGAGEIRPVNPDILLAKLRPGQEIDLEIHCVL 224
Query: 168 GFGKEHAKWNPTA 180
G G++HAK++P A
Sbjct: 225 GIGQDHAKFSPVA 237
>gi|305662634|ref|YP_003858922.1| RNA polymerase insert [Ignisphaera aggregans DSM 17230]
gi|304377203|gb|ADM27042.1| RNA polymerase insert [Ignisphaera aggregans DSM 17230]
Length = 281
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 27/184 (14%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
++++ ++E ++ + L + N+LRR +A+ PT A+D V + N++ + DE +A R
Sbjct: 2 NINVRRWSNEIIEIAISGVPLPLLNALRRYALAKVPTYAVDEVMVVINTSHMFDEMLAHR 61
Query: 68 IGLIPLTSDEVVDRI-------LY-----SRDCTCVDFCSECSVEFTLDVKCVDDQTRHV 115
I +IPL S+E ++RI Y S D D C +C V L+ +D V
Sbjct: 62 IAMIPLRSEEALERIKGLDIDVCYKCGSDSEDKPPSDVCEKCYVHMFLEA-VAEDSEYTV 120
Query: 116 TTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
++D+KS D V PV YG +I IV L GQ + L A+ G G EH K
Sbjct: 121 YSSDIKSEDEFVKPV-----------YG---NIPIVILSPGQRISLELRARVGRGIEHIK 166
Query: 176 WNPT 179
W+P
Sbjct: 167 WSPA 170
>gi|194856389|ref|XP_001968740.1| GG25034 [Drosophila erecta]
gi|190660607|gb|EDV57799.1| GG25034 [Drosophila erecta]
Length = 329
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 24/188 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I ++ ++F + ++AN+ RR+ +++ P+MAI+ V + N++++ DE +A R+
Sbjct: 39 IKIVKNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRM 98
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSEC-SVEFTLDVKCV------DDQTRH---VTTA 118
GL+PL +D R+ R + +E ++EF L VKC DQ+
Sbjct: 99 GLLPLRADP---RLFAYRTEESTEAGTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYKNH 155
Query: 119 DLKSTDARVVPVTSRNRDADMNEYGET------DDILIVKLRKGQELRLRAYAKKGFGKE 172
+ S + +P + + A + Y E+ DDILI +LR G EL LR A KG G++
Sbjct: 156 KVYSGHLKWLP---KGKQAQI--YSESAVNCIHDDILIAQLRPGHELDLRLVAVKGLGRD 210
Query: 173 HAKWNPTA 180
HAK++P A
Sbjct: 211 HAKFSPVA 218
>gi|150951291|ref|XP_001387588.2| RNA polymerase III (C) subunit [Scheffersomyces stipitis CBS 6054]
gi|149388472|gb|EAZ63565.2| RNA polymerase III (C) subunit [Scheffersomyces stipitis CBS 6054]
Length = 336
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 97/192 (50%), Gaps = 18/192 (9%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ ++ ++I+ TD F + + + ++AN+ RR+ I+E P++A + V + N++V+ DE
Sbjct: 38 FKDKFEINISYKTDRTANFDLINIDTAIANAFRRIMISEVPSVAAEAVYMFMNTSVIQDE 97
Query: 63 FIASRIGLIPLTSD----EVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTA 118
+A RIGLIPL D VD+ D + + ++ TLDV C + +
Sbjct: 98 VLAHRIGLIPLRVDPDKMNWVDKTQSPED----RYTEDNTIVLTLDVVCTKNPHAPKNST 153
Query: 119 DLKS------TDARVVPVTSRNRDA----DMNEYGETDDILIVKLRKGQELRLRAYAKKG 168
+ K AR + + A D+ DILI KLR GQE+ LRA+ G
Sbjct: 154 NPKELYRNAHVYARDLKFEPHGKQAELFKDLPVVAADPDILIAKLRPGQEISLRAHCILG 213
Query: 169 FGKEHAKWNPTA 180
G +HAK++P +
Sbjct: 214 VGCDHAKFSPVS 225
>gi|195576648|ref|XP_002078187.1| GD23312 [Drosophila simulans]
gi|194190196|gb|EDX03772.1| GD23312 [Drosophila simulans]
Length = 333
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 24/181 (13%)
Query: 16 DENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTS 75
++ ++F + ++AN+ RR+ +++ P+MAI+ V + N++++ DE +A R+GL+PL +
Sbjct: 50 EDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRMGLLPLRA 109
Query: 76 DEVVDRILYSRDCTCVDFCSEC-SVEFTLDVKCV------DDQTRH---VTTADLKSTDA 125
D R+ R + +E ++EF L VKC DQ+ + S
Sbjct: 110 DP---RLFAYRTEESTEAGTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYKNHKVYSGHL 166
Query: 126 RVVPVTSRNRDADMNEYGET------DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
+ +P + + A + Y E+ DDILI +LR G EL LR A KG G++HAK++P
Sbjct: 167 KWLP---KGKQAQI--YSESAVNCIHDDILIAQLRPGHELDLRLVAVKGLGRDHAKFSPV 221
Query: 180 A 180
A
Sbjct: 222 A 222
>gi|20129237|ref|NP_608885.1| CG3756 [Drosophila melanogaster]
gi|7296912|gb|AAF52185.1| CG3756 [Drosophila melanogaster]
gi|21429120|gb|AAM50279.1| LP03982p [Drosophila melanogaster]
Length = 333
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 24/181 (13%)
Query: 16 DENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTS 75
++ ++F + ++AN+ RR+ +++ P+MAI+ V + N++++ DE +A R+GL+PL +
Sbjct: 50 EDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRMGLLPLRA 109
Query: 76 DEVVDRILYSRDCTCVDFCSEC-SVEFTLDVKCV------DDQTRH---VTTADLKSTDA 125
D R+ R + +E ++EF L VKC DQ+ + S
Sbjct: 110 DP---RLFAYRTEESTEAGTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYKNHKVYSGHL 166
Query: 126 RVVPVTSRNRDADMNEYGET------DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
+ +P + + A + Y E+ DDILI +LR G EL LR A KG G++HAK++P
Sbjct: 167 KWLP---KGKQAQI--YSESAVNCIHDDILIAQLRPGHELDLRLVAVKGLGRDHAKFSPV 221
Query: 180 A 180
A
Sbjct: 222 A 222
>gi|327311714|ref|YP_004338611.1| RNA polymerase, insert [Thermoproteus uzoniensis 768-20]
gi|326948193|gb|AEA13299.1| RNA polymerase, insert [Thermoproteus uzoniensis 768-20]
Length = 279
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 93/172 (54%), Gaps = 19/172 (11%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
PS + + + ++K +E + S+ NS+RR+ I+E P AID V + N++ + DE +A
Sbjct: 2 PSAKVLERDNLHLKLYIEGVKPSLINSIRRIIISEVPVFAIDQVLIVNNTSSMYDEMLAH 61
Query: 67 RIGLIPLTSDEVVDRILYSRDC-TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+GLIPLT+ +D +C T + +EC+V FTL V D +T V + DL S
Sbjct: 62 RLGLIPLTTP--LDLFPKIEECETGMVDPAECTVRFTLQVTADDAKT--VYSGDLVSDHP 117
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
V PV DI IVKL KGQ + L AYA+ G KEHAKW
Sbjct: 118 DVKPVYP--------------DIPIVKLVKGQSISLEAYARLGRAKEHAKWQ 155
>gi|396080763|gb|AFN82384.1| RNA polymerase I and III subunit AC40 [Encephalitozoon romaleae
SJ-2008]
Length = 305
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 95/175 (54%), Gaps = 21/175 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ IT+ + E ++F + + + S AN+LRR+ + PTMA+ V L+ N +V DEFIA R+
Sbjct: 32 IKITEYSGERLEFDLVNVDCSFANALRRILCNDVPTMAVKDVFLKENESVFPDEFIAHRL 91
Query: 69 GLIPLTSD----EVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTD 124
GLIPL +D E V++ L R+ S+ F L+V ++++ V ++ S D
Sbjct: 92 GLIPLEADPEMFEFVEKELNERN----------SLRFVLNVT---NESKDVM--NVYSDD 136
Query: 125 ARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
+ +P + R+A N +L+ KL +GQ++ K G+ HAKW+P
Sbjct: 137 IKWIPFGGQ-REALRNAKF-CSGVLMFKLARGQKINAELVCTKNIGRVHAKWSPV 189
>gi|393234912|gb|EJD42471.1| hypothetical protein AURDEDRAFT_115078 [Auricularia delicata
TFB-10046 SS5]
Length = 355
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 16/182 (8%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I L+ +++F + + S+AN+ RR+ IAE PT+AI+ + N++V+ DE +A R+
Sbjct: 50 VEIQRLSHRSIEFDLVGVDASIANAFRRILIAEVPTVAIEHAYVWNNTSVIHDEVLAQRL 109
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS--TDAR 126
GL+PL D ++ + D ++ F L V C + H D + D+
Sbjct: 110 GLVPLDIDPA---LMEFHEGVSTD---RNTLVFRLQVTCERRKGAHKDETDPEKLYKDSN 163
Query: 127 V-------VPVTSR-NRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
V VP + AD ++IL+ KLR GQE+ + +A KG G EHAKW+P
Sbjct: 164 VYSKHLTWVPQGEQATFFADHPPRPCNENILLAKLRPGQEIEVELHAIKGRGNEHAKWSP 223
Query: 179 TA 180
Sbjct: 224 VG 225
>gi|159129762|gb|EDP54876.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus fumigatus A1163]
Length = 414
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 18/178 (10%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + S+AN+ RR+ +AE PT+AI++V + N++V+ DE +ASR+GLIPL S E +
Sbjct: 106 FSLIGLDASIANAFRRILMAEVPTLAIEYVFVHNNTSVIQDEVLASRLGLIPLKGSVEGL 165
Query: 80 DRILYSRDCTCVDFCSEC------SVEFTLDVKCV---------DDQTRHVTTADLKSTD 124
+ + + + T D S ++ LDV+C DD + A + + D
Sbjct: 166 NWMRWFKKPTEDDPESGSTPADYNTIVLRLDVECTENPNAAPGEDDPRKLYKNAHVYAKD 225
Query: 125 ARVVPVTSRNR--DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
PV + + D DILI KLR GQ++ + + KG G +HAK++P A
Sbjct: 226 ITFHPVGRQEQFFTGDGAIQPVNPDILIAKLRPGQKIDMELHCIKGIGADHAKFSPVA 283
>gi|67523919|ref|XP_660019.1| hypothetical protein AN2415.2 [Aspergillus nidulans FGSC A4]
gi|40745370|gb|EAA64526.1| hypothetical protein AN2415.2 [Aspergillus nidulans FGSC A4]
gi|259487823|tpe|CBF86802.1| TPA: DNA-directed RNA polymerase I and III subunit Rpc40, putative
(AFU_orthologue; AFUA_2G13720) [Aspergillus nidulans
FGSC A4]
Length = 373
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 91/179 (50%), Gaps = 20/179 (11%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + S+AN+ RR+ +AE PT+AI+WV + N++V+ DE +A R+GLIPL S E +
Sbjct: 66 FSLIGLDASIANAFRRIVMAEVPTLAIEWVYIHNNTSVIQDEVLAQRLGLIPLQGSVEGL 125
Query: 80 DRILY----SRD--CTCVDFCSECSVEFTLDVKCVD---------DQTRHVTTADLKSTD 124
+ + + S D + D +V LDV+C D + A + + D
Sbjct: 126 NWMQWYNKGSEDEPGSGSDLADYNTVVLRLDVECTKNPNASRDETDPRKLYKNAHVYAKD 185
Query: 125 ARVVPVTSRNRDADMNE---YGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
PV R + E DIL+ KLR GQ++ L + KG G +HAK++P A
Sbjct: 186 IVFHPV-GRQEEFFTGEGAIRAVNPDILVAKLRPGQKIELEMHCIKGIGADHAKFSPVA 243
>gi|50418823|ref|XP_457932.1| DEHA2C05654p [Debaryomyces hansenii CBS767]
gi|49653598|emb|CAG85988.1| DEHA2C05654p [Debaryomyces hansenii CBS767]
Length = 335
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 95/191 (49%), Gaps = 28/191 (14%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
++I+ L++ + F + + S+AN+ RR+ I+E P++A + V + N++V+ DE +A RI
Sbjct: 43 INISHLSERSSTFDLIHIDTSIANAFRRIMISEVPSVAAETVYVFNNTSVIQDEVLAHRI 102
Query: 69 GLIPLTSDE----VVDRILYSRDCTCVDFCSECSVEFTLDVKCVDD-------------- 110
GLIPL D +D +D F E ++ +LDV C +
Sbjct: 103 GLIPLKVDPDTLTWIDTAQDEKD----RFTDENTIVMSLDVSCTKNPHPPQGSTDPKELY 158
Query: 111 QTRHVTTADLK-STDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGF 169
+ HV DLK R + + N + DIL+ KLR QE+ LRA+ G
Sbjct: 159 RNSHVYAKDLKFEPQGRQLEIFKNNPVVAADP-----DILLAKLRPNQEISLRAHCILGV 213
Query: 170 GKEHAKWNPTA 180
G +HAK++P A
Sbjct: 214 GSDHAKFSPVA 224
>gi|424812604|ref|ZP_18237844.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Candidatus Nanosalinarum sp. J07AB56]
gi|339756826|gb|EGQ40409.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Candidatus Nanosalinarum sp. J07AB56]
Length = 188
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 33/161 (20%)
Query: 15 TDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT 74
TDE + Q+ED +VAN+LRR + + PTMA+ +++ N + L DE +A+R+G IPLT
Sbjct: 9 TDEVLHVQLEDANPAVANTLRRSMMTKVPTMAVQQLRVNQNQSGLFDEMLANRVGQIPLT 68
Query: 75 SDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRN 134
E D D T V LD + +TR VT DL + + V PV
Sbjct: 69 IPEGFD-----EDDTAV---------LALDREG---ETR-VTAEDLSAGNYDVTPV---- 106
Query: 135 RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
+D IVKL++GQ+L+ A A+ G+G EHAK
Sbjct: 107 -----------NDTTIVKLKEGQDLKFEADAELGYGTEHAK 136
>gi|146322984|ref|XP_755705.2| DNA-directed RNA polymerase I and III subunit Rpc40 [Aspergillus
fumigatus Af293]
gi|129558558|gb|EAL93667.2| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus fumigatus Af293]
Length = 374
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 18/178 (10%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + S+AN+ RR+ +AE PT+AI++V + N++V+ DE +ASR+GLIPL S E +
Sbjct: 66 FSLIGLDASIANAFRRILMAEVPTLAIEYVFVHNNTSVIQDEVLASRLGLIPLKGSVEGL 125
Query: 80 DRILYSRDCTCVDFCSEC------SVEFTLDVKCV---------DDQTRHVTTADLKSTD 124
+ + + + T D S ++ LDV+C DD + A + + D
Sbjct: 126 NWMRWFKKPTEDDPESGSTPADYNTIVLRLDVECTENPNAAPGEDDPRKLYKNAHVYAKD 185
Query: 125 ARVVPVTSRNR--DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
PV + + D DILI KLR GQ++ + + KG G +HAK++P A
Sbjct: 186 ITFHPVGRQEQFFTGDGAIQPVNPDILIAKLRPGQKIDMELHCIKGIGADHAKFSPVA 243
>gi|325968486|ref|YP_004244678.1| RNA polymerase insert [Vulcanisaeta moutnovskia 768-28]
gi|323707689|gb|ADY01176.1| RNA polymerase insert [Vulcanisaeta moutnovskia 768-28]
Length = 317
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 91/171 (53%), Gaps = 21/171 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + +D +K V+ + N+LRRVFI++ P +AID V + N++VL DE +A R+
Sbjct: 21 VKVIEKSDLYMKAVVDGITPPLINALRRVFISDVPVLAIDEVIILDNTSVLYDEVLAHRL 80
Query: 69 GLIPLTSDEVVDRILYSRDC--TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
+IP+ +D + ++ +C VD S C V F L+V+ + V DLKS D
Sbjct: 81 SMIPIKTD--LKKLPKIEECEQELVD-PSLCQVRFELNVEAKEPVV--VYGRDLKSDDPE 135
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
V PV +D+ IVKL GQ++ L AYAK G + HAKW
Sbjct: 136 VRPV--------------YEDVPIVKLVPGQKIVLEAYAKLGRARNHAKWQ 172
>gi|119481605|ref|XP_001260831.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Neosartorya fischeri NRRL 181]
gi|119408985|gb|EAW18934.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Neosartorya fischeri NRRL 181]
Length = 374
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 18/178 (10%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + S+AN+ RR+ +AE PT+AI++V + N++V+ DE +ASR+GLIPL S E +
Sbjct: 66 FSLIGLDASIANAFRRILMAEVPTLAIEYVFVHNNTSVIQDEVLASRLGLIPLKGSVEGL 125
Query: 80 DRILYSRDCTCVDFCSEC------SVEFTLDVKCV---------DDQTRHVTTADLKSTD 124
+ + + + T D S ++ LDV+C DD + A + + D
Sbjct: 126 NWMRWFKKPTEDDPESGSTPADYNTIVLRLDVECTENPNAAPGEDDPRKLYKNAHVYAKD 185
Query: 125 ARVVPVTSRNR--DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
PV + + D DILI KLR GQ++ + + KG G +HAK++P A
Sbjct: 186 ITFHPVGRQEQFFTGDGAIQPVNPDILIAKLRPGQKIDMELHCIKGIGADHAKFSPVA 243
>gi|388582543|gb|EIM22847.1| RNA polymeras-like protein I subunit hRPA39, partial [Wallemia sebi
CBS 633.66]
Length = 362
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 16/185 (8%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
+ H+ + ++ ++F + + S+AN+LRRV IAE PT+A++ V + N++V+ DE +A R
Sbjct: 46 TTHVNAVAEDEIEFDLIGVDPSIANALRRVMIAEVPTVAVENVFVFNNTSVMHDEVMAHR 105
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV---------DDQTRHVTTA 118
+GL+P+ D +R+ + + + ++ FTL V C D +
Sbjct: 106 LGLVPILFD--AERLEEFQKGDSPN--DQNTIVFTLQVACTRKAKVAAGETDPDKIYENH 161
Query: 119 DLKSTDARVVPVTSRNRDA---DMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
+ S D + VP + D D +ILI KLR GQ + L + KG G++HAK
Sbjct: 162 KVYSKDFKWVPQGGQASDPLFTDNPPRVAYPEILITKLRPGQSIDLELHCVKGLGQDHAK 221
Query: 176 WNPTA 180
++P A
Sbjct: 222 FSPAA 226
>gi|126460700|ref|YP_001056978.1| DNA-directed RNA polymerase subunit D [Pyrobaculum calidifontis JCM
11548]
gi|166229320|sp|A3MXZ5.1|RPOD_PYRCJ RecName: Full=DNA-directed RNA polymerase subunit D
gi|126250421|gb|ABO09512.1| DNA-directed RNA polymerase, subunit D [Pyrobaculum calidifontis
JCM 11548]
Length = 258
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 87/179 (48%), Gaps = 31/179 (17%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
P V I + + K VE S+ NSLRRV I+E P +AID V + N++V+ DE +A
Sbjct: 1 MPKVSIVEKSQFFAKAVVEGVPPSLINSLRRVIISELPVLAIDSVVVVNNTSVMYDEMLA 60
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFC-------SECSVEFTLDVKCVDDQTRHVTTA 118
R+GLIPLT+ +D ++ C SEC+V TL V D V
Sbjct: 61 HRLGLIPLTTP--------LKDLPPIEDCESGLVDPSECTVRLTLQVNATGDVV--VYAG 110
Query: 119 DLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
DL + V PV DI IVKL +GQ + + AYAK G ++HAKW
Sbjct: 111 DLVADRPDVAPVYK--------------DIPIVKLVEGQSVVVEAYAKLGRARDHAKWQ 155
>gi|121716353|ref|XP_001275782.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus clavatus NRRL 1]
gi|119403939|gb|EAW14356.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus clavatus NRRL 1]
Length = 374
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 18/178 (10%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + S+AN+ RR+ +AE PT+AI++V + N++V+ DE +ASR+GLIPL S E +
Sbjct: 66 FSLIGVDPSIANAFRRILMAEVPTLAIEYVFVHNNTSVIQDEVLASRLGLIPLKGSVEGL 125
Query: 80 DRILYSRDCTCVDFCSEC------SVEFTLDVKCV---------DDQTRHVTTADLKSTD 124
+ + + + T D S ++ LDV+C DD + A + + D
Sbjct: 126 NWMRWFKKPTEEDPDSGSNPADYNTIVLRLDVECAENPNAAPGEDDPRKLYKNAHVYAKD 185
Query: 125 ARVVPVTSRNR--DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
PV + + D DIL+ KLR GQ++ + + KG G +HAK++P A
Sbjct: 186 ITYHPVGRQEQFFTGDGAIQPVNPDILVAKLRPGQKIDMELHCIKGIGADHAKFSPVA 243
>gi|225677934|gb|EEH16218.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Paracoccidioides brasiliensis Pb03]
Length = 345
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 19/179 (10%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + S+AN+ RR+ IAE P++AI+ V + N++V+ DE +A R+GL+PLT S E +
Sbjct: 31 FSLIGVDASIANAFRRILIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPEGI 90
Query: 80 DRILYSRDCTCVDFCSEC------SVEFTLDVKCV---------DDQTRHVTTADLKSTD 124
+ + + R D S ++ L+VKC D + + A + + D
Sbjct: 91 NWLRWFRQPNEGDPSSGSELADYNTIVLHLNVKCKKNPKASPDEQDPLKLYSHAHVYAKD 150
Query: 125 ARVVPVTSRNR---DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
PV + + D DIL+ KLR GQ++ + + KG G +HAK++P A
Sbjct: 151 ITFQPVGRQEAYFPEPDGGIRPTNPDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVA 209
>gi|307594234|ref|YP_003900551.1| RNA polymerase insert [Vulcanisaeta distributa DSM 14429]
gi|307549435|gb|ADN49500.1| RNA polymerase insert [Vulcanisaeta distributa DSM 14429]
Length = 302
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 91/171 (53%), Gaps = 21/171 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + ++ +K V+ V NSLRRV I++ P +AID V + N++VL DE +A R+
Sbjct: 4 VKVIEKSNLYLKAVVDGVTPPVINSLRRVLISDVPVLAIDEVIILDNTSVLYDEVLAHRL 63
Query: 69 GLIPLTSDEVVDRILYSRDC--TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
++P+ +D + ++ +C VD S C V F L+V+ + V + DLKS D
Sbjct: 64 SMMPIKTD--LRKLPKIEECEQELVD-PSLCQVRFELNVEA--KEPMIVYSRDLKSDDPE 118
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
V PV +DI IVKL GQ++ L AYAK G + HAKW
Sbjct: 119 VRPV--------------YEDIPIVKLVPGQKIVLEAYAKLGRARNHAKWQ 155
>gi|302693813|ref|XP_003036585.1| hypothetical protein SCHCODRAFT_45907 [Schizophyllum commune H4-8]
gi|300110282|gb|EFJ01683.1| hypothetical protein SCHCODRAFT_45907 [Schizophyllum commune H4-8]
Length = 354
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 6/177 (3%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + L++ +++F + + S+AN+ RR+ IAE PT+AI+ V + N++V+ DE +A R+
Sbjct: 46 VKVQRLSNRSIEFDLVGVDASIANAFRRIMIAEVPTIAIENVYVWDNTSVIVDEVLAHRL 105
Query: 69 GLIPLT--SDEVVDR--ILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTD 124
GL+PL D++ R I RD D C+ + + + + ++ S+
Sbjct: 106 GLVPLNVDPDQMQPRKDIPTDRDTIIFDLAVACTRKSHSSANATEPEDLY-DNHEVLSSH 164
Query: 125 ARVVPVTSRNR-DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ PV + A+ +I++ KLR GQ + + +A KG GK+HAK++P A
Sbjct: 165 LKWRPVGEQEEVFANKPPAPTNPNIVLAKLRPGQAVHMELHAVKGVGKDHAKFSPVA 221
>gi|57965352|ref|XP_561116.1| Anopheles gambiae str. PEST AGAP012796-PA [Anopheles gambiae str.
PEST]
gi|55247027|gb|EAL42262.1| AGAP012796-PA [Anopheles gambiae str. PEST]
Length = 234
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 15/163 (9%)
Query: 29 SVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC 88
++AN RR+ ++E P+MAI+ V + N++++ D +A R+GLIPL +D ++
Sbjct: 62 AIANVFRRLMLSEVPSMAIEKVHIYNNTSIIQDGGLAHRLGLIPLRADPR----MFEYKA 117
Query: 89 TCVDFCSEC-SVEFTLDVKC---------VDDQTRHVTTADLKSTDARVVPVTSRNRDAD 138
D S ++EF L VKC V + + S + VP+ ++
Sbjct: 118 NETDPPSALDTLEFELKVKCTRKNKDSTEVTNNENMYKNHSIYSGQIKWVPIGNQATIYT 177
Query: 139 MNEYGET-DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
G DDILI K+R G E ++ +A KG GK+HAK++P A
Sbjct: 178 EATVGPIDDDILISKMRPGHEFDIKLFAVKGVGKDHAKFSPVA 220
>gi|336372326|gb|EGO00665.1| hypothetical protein SERLA73DRAFT_178536 [Serpula lacrymans var.
lacrymans S7.3]
gi|336385070|gb|EGO26217.1| hypothetical protein SERLADRAFT_447454 [Serpula lacrymans var.
lacrymans S7.9]
Length = 363
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 97/187 (51%), Gaps = 23/187 (12%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + L+ +++F + T+ S+AN+ RR+ IAE PT++++ V + N++V+ DE +A RI
Sbjct: 54 VKVQRLSGRSIEFDLVGTDASIANAFRRILIAEVPTISVERVYVWDNTSVVVDEILAQRI 113
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PL D + +++ T ++ F L V C ++ A STD R +
Sbjct: 114 GLVPLNVDPA---WMDTKETTNDQATDRNTLVFRLKVACERNK-----NAPKGSTDPREM 165
Query: 129 PVTS--RNRDADMNEYGE-------------TDDILIVKLRKGQELRLRAYAKKGFGKEH 173
+ S + + GE +I++ KLR GQE+ + +A KG GK+H
Sbjct: 166 YINSDVLSSHLEWEPQGEQATVFASSPPAPTNPNIVLGKLRPGQEIDIEMHAVKGVGKDH 225
Query: 174 AKWNPTA 180
AK+ P A
Sbjct: 226 AKFCPVA 232
>gi|212530122|ref|XP_002145218.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Talaromyces marneffei ATCC 18224]
gi|210074616|gb|EEA28703.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Talaromyces marneffei ATCC 18224]
Length = 373
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 21/179 (11%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + SVAN+ RR+ IAE PT+AI++V + N++V+ DE +ASR+GLIPL S E +
Sbjct: 66 FSLVGLDASVANAFRRILIAEVPTLAIEFVYILNNTSVIQDEVLASRLGLIPLKGSIEGL 125
Query: 80 DRILYSRDCTCVDFCSECSVEF-----TLDVKCV---------DDQTRHVTTADLKSTDA 125
+ + + + T D S +F L+++C +D A + ++D
Sbjct: 126 NWMQWFKKATEEDPSSSEPSDFNTVVLNLNIECTVNEKAPPGEEDPRIRYHNAHVYASDI 185
Query: 126 RVVPVTSRNRDADMNEYGE----TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
P ++ + GE DILI KLR GQ + L + KG G +HAK++P A
Sbjct: 186 TFDP--KGRQEHYFSGEGEIKPVNPDILIAKLRPGQVIELEMHCIKGIGADHAKFSPVA 242
>gi|324508945|gb|ADY43772.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Ascaris suum]
Length = 343
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 29/203 (14%)
Query: 3 YANQPSVHITDLTDEN--VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
Y ++ + I + +D+ ++F V E +AN++RR+ +AE PTMA + + L N++++
Sbjct: 28 YISRIKIDIINESDDEMTLEFDVIHVEAPIANAMRRILLAEVPTMAFEKIYLYQNTSIIQ 87
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVE--------------FTLDVK 106
DE + R+GL+P+ +D L+ T V +E V+ F L V
Sbjct: 88 DEVLCHRLGLLPIRADPR----LFEMPLTKVIGINETGVDVDEEPPGDPKRNLIFELKVS 143
Query: 107 C---------VDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQ 157
C D A + S +P+ + DDIL+ KLR GQ
Sbjct: 144 CKRKPNAPKSATDPQEIFDNAVVYSKSFEWIPIGDQATSLPYPPNMVHDDILVAKLRPGQ 203
Query: 158 ELRLRAYAKKGFGKEHAKWNPTA 180
E+ R + KG G++HAK++P A
Sbjct: 204 EIEARCHCVKGIGRDHAKFSPVA 226
>gi|167045221|gb|ABZ09881.1| putative RNA polymerase Rpb3/RpoA insert domain protein [uncultured
marine crenarchaeote HF4000_APKG8O8]
Length = 201
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 81/163 (49%), Gaps = 26/163 (15%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
+ + +++ L AN+LRR+ + AID V + NS+VL+DE I R+GLIPL +D
Sbjct: 12 KKISIKLKGVTLQYANALRRICLNGVAIYAIDTVDMIENSSVLADEGITHRLGLIPLKTD 71
Query: 77 EVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRD 136
SR S+ + TLD + R VT+A+L S D V P
Sbjct: 72 -------LSRSDE-----SDSRIMLTLDSGDDTETGRMVTSAELLSDDKVVKP------- 112
Query: 137 ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
+D I I+ L GQ+L+ AYA+ G G EHAKWN +
Sbjct: 113 -------SSDQIPIIHLTPGQKLKFEAYARLGRGTEHAKWNSS 148
>gi|313236133|emb|CBY11457.1| unnamed protein product [Oikopleura dioica]
gi|313243610|emb|CBY42293.1| unnamed protein product [Oikopleura dioica]
Length = 355
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 92/174 (52%), Gaps = 17/174 (9%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E V+F + + S++N+LRR+ IAE P MA D V + N+T++ DE +A R+GLIP+ +D
Sbjct: 64 EKVEFDIRGIDPSMSNTLRRIMIAEVPQMAFDRVLIFNNTTLIQDEVLAHRLGLIPIKAD 123
Query: 77 EVVDRILYSRDCTCVDFCSECS------------VEFTLDVKCVDDQTRHVTTADLKSTD 124
+ +D T +D C++ + F + K + T HV + S++
Sbjct: 124 FRQFKSRTEKDMTSID-CTKAAHVKGAKEDDSLLFHFKVIGKHQKNSTNHVQIVE--SSE 180
Query: 125 ARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+ PV N+ MN DI I K++ Q + + +A +G G++HAK++P
Sbjct: 181 LKWSPVG--NQKETMNVMPCFHDITIAKIKPKQFIDIELHAFRGIGRDHAKFSP 232
>gi|328785531|ref|XP_625072.3| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Apis mellifera]
Length = 510
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 24/180 (13%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
++F + + AN+ RRV ++E PTMAI+ V + N++++ DE +A R+GLIPL +D
Sbjct: 54 LEFDLIGYPVGFANAFRRVLLSEVPTMAIEKVYIVNNTSLIQDEVLAHRLGLIPLRAD-- 111
Query: 79 VDRILYSRDCTCVD---FCSECSVEFTLDVKCV------DDQTR---HVTTADLKSTDAR 126
R+ T D + ++ + L + C D R +++ S D +
Sbjct: 112 -PRLFEYPSSTAKDQDEVSDQDTLRYELKISCTWNSQAPKDSRRTNDMYRNSNVYSRDIK 170
Query: 127 VVPVTSRNRDADMNEYGE------TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
VP+ A++ G +DILI K+R GQE+ +A KG GK+HAK++P A
Sbjct: 171 WVPI---GHQAELYPRGTEQLSVLENDILICKMRPGQEIHAFMHAVKGIGKDHAKFSPVA 227
>gi|365982085|ref|XP_003667876.1| hypothetical protein NDAI_0A04770 [Naumovozyma dairenensis CBS 421]
gi|343766642|emb|CCD22633.1| hypothetical protein NDAI_0A04770 [Naumovozyma dairenensis CBS 421]
Length = 335
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 20/187 (10%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V IT L++ F + + + S+AN+ RR+ I+E P++A ++V N++V+ DE +A RI
Sbjct: 42 VQITSLSEREANFDLINIDTSMANAFRRIMISEVPSVAAEYVYFLTNTSVIQDEVLAHRI 101
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
G+IPL D + + + F + +V +L++KC TR++ A TD +++
Sbjct: 102 GMIPLKVDPDMLSWIDTSLSEEEKFTDDNTVVMSLNIKC----TRNL-NAPKDCTDPKIL 156
Query: 129 PVTSR--NRDADMNEYGET-------------DDILIVKLRKGQELRLRAYAKKGFGKEH 173
S +D G+ DIL+ KLR QE+ LR + G G +H
Sbjct: 157 YHNSSVYAKDLKFEPQGKQVETFAKCPVVPSDPDILLAKLRPDQEISLRVHCILGVGGDH 216
Query: 174 AKWNPTA 180
AK++P +
Sbjct: 217 AKFSPVS 223
>gi|116754910|ref|YP_844028.1| RNA polymerase, insert [Methanosaeta thermophila PT]
gi|116666361|gb|ABK15388.1| DNA-directed RNA polymerase, subunit D [Methanosaeta thermophila
PT]
Length = 264
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 24/173 (13%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
+V + +L D+ V+F + + AN++RR IAE P +AID + + N++VL DE IA R
Sbjct: 2 NVELIELRDDRVRFLLTGVTPAFANAIRRSCIAEVPKLAIDEISIYENTSVLFDEQIALR 61
Query: 68 IGLIPLTSDEVVDRILYSR--DCTCVDF-CSECSVEFTLDVKCVDDQTRHVTTADLKSTD 124
+GL+P+ +D D +YS +C C C C ++F L + V + D+K +D
Sbjct: 62 LGLVPIRAD---DLSVYSTPDECQCGGIGCPGCRIDFMLTA----EGPATVHSRDIKFSD 114
Query: 125 ARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
V D+I +V L +G++L + +A GKEHAKW
Sbjct: 115 PSV--------------RAAFDNIPLVVLGEGEKLVIEGFATLRTGKEHAKWQ 153
>gi|330921707|ref|XP_003299536.1| hypothetical protein PTT_10544 [Pyrenophora teres f. teres 0-1]
gi|311326761|gb|EFQ92375.1| hypothetical protein PTT_10544 [Pyrenophora teres f. teres 0-1]
Length = 376
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 97/194 (50%), Gaps = 25/194 (12%)
Query: 10 HITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIG 69
H D TD +F + + SVAN+ RR+ ++E PT+AI+ V + N++++ DE +A R+G
Sbjct: 55 HRNDPTD--AQFSLTGIDTSVANAFRRILLSEIPTLAIEDVYIYQNTSIIQDEVLAHRLG 112
Query: 70 LIPLTSDEVVDRIL--YSR--------------DCTCVDFCSECSVEFTLDVKCVDDQT- 112
LIPL D R + Y++ + ++ + C+ + + V +T
Sbjct: 113 LIPLCGDRASLRAMKWYAKPTDEDEGSGNPTSCNTVALELKAMCTWQPGGLARAVAGETD 172
Query: 113 --RHVTTADLKSTDARVVPVTSRNRDADMNEYGE----TDDILIVKLRKGQELRLRAYAK 166
+ ++ + D R P + ++ E DILI K+R GQE+ LR +A
Sbjct: 173 PDKLYVGHNVYAKDIRFEPNGDQAQNFSQAEGKHIRSTNPDILICKMRPGQEINLRMHAI 232
Query: 167 KGFGKEHAKWNPTA 180
KG ++HAK++P A
Sbjct: 233 KGISQDHAKFSPVA 246
>gi|50553838|ref|XP_504330.1| YALI0E23947p [Yarrowia lipolytica]
gi|49650199|emb|CAG79929.1| YALI0E23947p [Yarrowia lipolytica CLIB122]
Length = 339
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 95/180 (52%), Gaps = 8/180 (4%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I LTD F + + S+AN+ RR+ IA+ PT+A++ V + AN++++ DE +A R+
Sbjct: 47 VKIHSLTDNYSNFDLIGIDTSLANAFRRIMIADIPTIAVEEVFIHANTSIIQDEVLAHRL 106
Query: 69 GLIPLT-SDEVVDRILYSRDCTCVDFCSECSVEFT--LDVKCVDDQTRHVTTADLKSTDA 125
GL+PL + E ++ + D + ++ + S F L+V C + A + + D
Sbjct: 107 GLVPLVINPERINALPRGLDASEIEDYYDDSNTFVLRLNVTCERLADGTMKNAHIYARDI 166
Query: 126 RVVPVTSR---NRDADMNEYGE--TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
P+ ++ +D + + DILI KLR Q + L + GFG +HAK++P A
Sbjct: 167 TFDPMGNQCQWVKDEGLENVFKVANPDILIAKLRPNQSINLTMFCHLGFGHDHAKFSPVA 226
>gi|261196646|ref|XP_002624726.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239595971|gb|EEQ78552.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239609550|gb|EEQ86537.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327350214|gb|EGE79071.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 380
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 21/180 (11%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + ++AN+ RR+ IAE P++AI+ V + N++V+ DE +A R+GL+PLT + E +
Sbjct: 66 FSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGAAEGI 125
Query: 80 DRILYSRDCT--CVDFCSECS----VEFTLDVKCV---------DDQTRHVTTADLKSTD 124
+ + + R T D SE S + L V+C +D + A + + D
Sbjct: 126 NWLRWFRQPTEGKPDSGSELSDSNTIVLHLSVECTKNPKASANEEDPQKLYNHAHVYAKD 185
Query: 125 ARVVPVTSRNRDADMNEYG----ETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
PV R YG DIL+ KLR GQ++ + + KG G +HAK++P A
Sbjct: 186 ITFHPV-GRQEAYFPEPYGAIRSANPDILLAKLRPGQKIDIEMHCIKGIGADHAKFSPVA 244
>gi|320582291|gb|EFW96508.1| RNA polymerase III (C) subunit [Ogataea parapolymorpha DL-1]
Length = 335
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 12/183 (6%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
++I+ LT F + + S+AN+ RR+ IAE P++A ++V + N++V+ DE +A RI
Sbjct: 42 LNISYLTQRTANFDLVGLDTSIANAFRRIMIAEVPSVAAEYVYIFNNTSVIQDEVLAHRI 101
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PL D + + F E ++ +LDV C + D ++ R
Sbjct: 102 GLVPLKVDPDMLTWIDPNAEEEDKFTDENTIVLSLDVACTKNPNAVPGNNDPENL-YRNS 160
Query: 129 PVTSRNRDADMNEYGETD-----------DILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
V +R+ + N T DILI KLR QE+ LR + G G +HAK++
Sbjct: 161 NVYARDLKFEPNGRQVTQFANCPVVPCDPDILIAKLRPNQEISLRVHCVLGIGADHAKFS 220
Query: 178 PTA 180
P +
Sbjct: 221 PVS 223
>gi|295663793|ref|XP_002792449.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226279119|gb|EEH34685.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 380
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 91/179 (50%), Gaps = 19/179 (10%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + S+AN+ RR+ IAE P++AI+ V + N++V+ DE +A R+GL+PLT S E +
Sbjct: 66 FSLIGVDASIANAFRRILIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPEGI 125
Query: 80 DRILYSRDCTCVDFCSEC------SVEFTLDVKCVD---------DQTRHVTTADLKSTD 124
+ + + R D S ++ L+V+C D + + A + + D
Sbjct: 126 NWLRWFRQPNEGDPSSGSELADYNTIVLHLNVECKKNPKASPNELDPLKLYSHAHVYAKD 185
Query: 125 ARVVPVTSRNR---DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
PV + + D DIL+ KLR GQ++ + + KG G +HAK++P A
Sbjct: 186 ITFQPVGRQEAYFPEPDGGIRPTNPDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVA 244
>gi|156936978|ref|YP_001434774.1| DNA-directed RNA polymerase subunit D [Ignicoccus hospitalis
KIN4/I]
gi|156565962|gb|ABU81367.1| DNA-directed RNA polymerase, subunit D [Ignicoccus hospitalis
KIN4/I]
Length = 283
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 26/182 (14%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ + + T +++ + L+V N++RR + P MA+D++ ++ N + L +E +A R+
Sbjct: 3 IEVLEETPTSIRLLAKGYPLAVLNAIRRAALELAPKMAVDFIAVDRNDSTLFNEVLAHRL 62
Query: 69 GLIPLTSDEVVDRILYSRDCT-----------CVDFCSECSVEFTLDVKCVDDQTRHVTT 117
+IPL S+E ++R C CV C V LD Q V +
Sbjct: 63 AMIPLRSEEALERYAPPEACMECTPEEAEADKCVVDGKPCYVRLYLDASAEGKQI-IVYS 121
Query: 118 ADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
DLKS D V PV ++I +V L Q++++ AYA+ G G+EHAKW
Sbjct: 122 KDLKSEDEDVRPV--------------YENIPVVPLIGDQKVKVIAYARLGRGREHAKWM 167
Query: 178 PT 179
P
Sbjct: 168 PA 169
>gi|340924182|gb|EGS19085.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide-like
protein [Chaetomium thermophilum var. thermophilum DSM
1495]
Length = 374
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 90/185 (48%), Gaps = 32/185 (17%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVV 79
F + S+AN+ RR+ IA+ PT+AI+ V + N++V+ DE +A R+GLIP E +
Sbjct: 66 FSLIGCHASIANAFRRIMIADIPTLAIETVFINNNTSVIQDEVLAHRLGLIPFKGGKEGL 125
Query: 80 DRILY---------SRDCTCVDFCSECSVEFTLDVKCVD---------DQTRHVTTADLK 121
+ L + + DF +V L+VKC + D T+ A +
Sbjct: 126 HKFLKWWKKPADESQINNSYYDF---NTVSLRLEVKCEENPDAAPGETDPTKLYKHAHVY 182
Query: 122 STDARVVPVTSRNRDADMNEYGE------TDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
+ D PV +++ GE DILI KLR GQE+ L + KG G +HAK
Sbjct: 183 ARDIEFCPVGRQHKYFS----GENAIRPVNPDILIAKLRPGQEISLSMHMHKGVGSDHAK 238
Query: 176 WNPTA 180
++P A
Sbjct: 239 FSPVA 243
>gi|156368414|ref|XP_001627689.1| predicted protein [Nematostella vectensis]
gi|156214606|gb|EDO35589.1| predicted protein [Nematostella vectensis]
Length = 342
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 97/181 (53%), Gaps = 14/181 (7%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
++IT LT +++F + + SVAN+ RR+ +AE PTMAI+ V L N++++ DE +A R+
Sbjct: 48 INITRLTPSDMEFDMIGIDASVANAFRRILLAEVPTMAIEKVFLYNNTSIIQDEVLAHRL 107
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQT--RHVTTADLKSTDAR 126
GLIP+ +D R+ + + + ++ F L VKC+ ++ + T D +++
Sbjct: 108 GLIPIHADP---RLFNYKKQGDEEAQDDTTLVFELKVKCIKNKNAPKDATDPDELYINSK 164
Query: 127 V-------VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
V +P + + + +++ QEL ++ +A KG GK+HAK++P
Sbjct: 165 VTTDHLKWIPTPQQAQKFGPQDIRPLSNVVF--FFTLQELDIKMHAVKGVGKDHAKFSPV 222
Query: 180 A 180
Sbjct: 223 G 223
>gi|343469407|emb|CCD17607.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 141
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E + FQ+++ + S AN LRRV +AE P +A+ V + N++VL DE IA RIGL+PL S
Sbjct: 17 ETLVFQLDEVDNSFANGLRRVLLAEVPVLAVVSVTIVQNTSVLPDEMIAHRIGLVPLYSM 76
Query: 77 EVVDRILYSRDCTCVDF-CSECSVEFTLDVKCVDD-QTRHVTTADLKSTDARVVPVTSRN 134
+ + L + DC C C +C + + V+C D + V T LK D +V PV+S+
Sbjct: 77 KAREMQL-AGDCLCGGLGCIKCQITGEMKVRCPSDRHSLQVFTDSLKIDDEQVYPVSSKE 135
Query: 135 R 135
R
Sbjct: 136 R 136
>gi|380022855|ref|XP_003695251.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I and
III subunit RPAC1-like [Apis florea]
Length = 587
Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 30/186 (16%)
Query: 16 DENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTS 75
+ ++F + + AN+ RRV ++E PTMAI+ V + N++++ DE +A R+GLIPL +
Sbjct: 51 NRELEFDLIGYPVGFANAFRRVLLSEVPTMAIEKVYIVNNTSLIQDEVLAHRLGLIPLRA 110
Query: 76 DEVVDRILYSRDCTCVD---FCSECSVEFTLDVKC------------VDDQTRHVTTADL 120
D R+ T D + ++ + L + C +D R+ +++
Sbjct: 111 DP---RLFEYPSSTAKDQDEVSDQDTLRYELKISCTWNSQAPKDSRRTNDMYRN---SNV 164
Query: 121 KSTDARVVPVTSRNRDADMNEYGE------TDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
S D + VP+ A++ G +DILI K+R GQE+ +A KG GK+HA
Sbjct: 165 YSRDIKWVPI---GHQAELYPRGTEQLGVLENDILICKMRPGQEIHAFMHAVKGIGKDHA 221
Query: 175 KWNPTA 180
K++P A
Sbjct: 222 KFSPVA 227
>gi|294894048|ref|XP_002774720.1| DNA-directed RNA polymerase I, putative [Perkinsus marinus ATCC
50983]
gi|239880227|gb|EER06536.1| DNA-directed RNA polymerase I, putative [Perkinsus marinus ATCC
50983]
Length = 310
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 83/162 (51%), Gaps = 18/162 (11%)
Query: 29 SVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC 88
+AN+LRR+ IAE PT+AI+ + N+ V+ DE +A R+GL+P+ D +D L RD
Sbjct: 21 PIANALRRIMIAEIPTIAIEKCYVYQNTGVIHDEILAHRLGLVPIYCD--IDS-LKMRD- 76
Query: 89 TCVDFCSECS---------VEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRN--RDA 137
D E + F+L+ C + + S D + VP+ + R
Sbjct: 77 --EDAPPEQRDDVTDPDTWICFSLEKVCPQSHPPR-ESMPVYSGDLKWVPLNAEQEERYK 133
Query: 138 DMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
D DD+LI KLR GQEL ++ + KG GK HAKW+P
Sbjct: 134 DDPPRPVYDDVLITKLRCGQELEIKCFCCKGIGKIHAKWSPV 175
>gi|219121193|ref|XP_002185825.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582674|gb|ACI65295.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 319
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 81/174 (46%), Gaps = 25/174 (14%)
Query: 29 SVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC 88
S N+LRR+ +AE PT+A++ + + NS+++ DE ++ R+GLIPL D R+L +D
Sbjct: 22 SFVNALRRILLAEVPTVALENIYMWENSSLIHDEVLSHRLGLIPLKIDA---RLLDEQDD 78
Query: 89 TCVDFCSECSVEFTLDVKCVDDQTR---------HVTTADLKSTDARVVPVTSRNRDADM 139
+V F L V C D + H D D P T D+
Sbjct: 79 DDPSPTDRNTVVFRLGVSCGSDPNKGKAKHKADSHENANDAAEADQDERPYTKHVYSKDL 138
Query: 140 -------------NEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ DDILI KLR GQ + L + + G GK+HAK++P A
Sbjct: 139 VWVPQGDQEERLQDICAMHDDILIAKLRPGQSIELEVHGRVGVGKDHAKFSPVA 192
>gi|380478357|emb|CCF43643.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Colletotrichum higginsianum]
Length = 372
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 23/197 (11%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+A+ V F + + S+AN+ RR+ IAE PT+AI+ V +E N++V+ DE
Sbjct: 49 FASNFRVQFHHNAQHEASFSLVGVDASIANAFRRILIAEIPTIAIENVYIENNTSVIQDE 108
Query: 63 FIASRIGLIPLTSD-EVVDRIL--YSR----DCTCVDFCSECSVEFTLDVKCV------- 108
+A R+GLIP T + E + + L Y + D+ +V+ L ++C
Sbjct: 109 VLAHRLGLIPFTGNPEGIHKFLKWYRKPEQGGKGSFDY---NTVQLRLRIECTRNSDAAP 165
Query: 109 --DDQTRHVTTADLKSTDARVVPVTSRNRDADMNE---YGETDDILIVKLRKGQELRLRA 163
D + A + + D VP T R + E DIL+ KLR GQ + L
Sbjct: 166 GETDPDKAFHNASVYAKDIEFVP-TGRQLEFFSGEDAIRPVNPDILVAKLRPGQCIELDM 224
Query: 164 YAKKGFGKEHAKWNPTA 180
+ KG G +HAK++P A
Sbjct: 225 HMHKGIGADHAKFSPVA 241
>gi|406866169|gb|EKD19209.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 379
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 20/193 (10%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
Q H D T+ F + + SVAN+ RR+ IAE PT+AI+ V + N++++ DE +A
Sbjct: 57 QVKFHHNDPTE--ASFSLIGLDASVANAFRRIMIAEIPTLAIENVYIYNNTSIIQDEVLA 114
Query: 66 SRIGLIPLT--SDEVVDRILYSRDCTCVDFCSECSVEFT-----LDVKCV---------D 109
R+GLIPL ++ ++D + + + S + ++ L+V+C
Sbjct: 115 HRLGLIPLKGGNEGLLDYLKWLKKPEESSQESPVNYDYNTILLELNVECTKNHDAPKGEK 174
Query: 110 DQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET--DDILIVKLRKGQELRLRAYAKK 167
D A + + D + P ++++ + ET DILI KLR GQ + L +A K
Sbjct: 175 DPLVLYHNAHIYAKDIKFKPFGNQHKYFSGEDAIETTNPDILIAKLRPGQCIELEMHAIK 234
Query: 168 GFGKEHAKWNPTA 180
G G +HAK++P A
Sbjct: 235 GVGSDHAKFSPVA 247
>gi|118576727|ref|YP_876470.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Cenarchaeum symbiosum A]
gi|118195248|gb|ABK78166.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Cenarchaeum symbiosum A]
Length = 212
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 19/170 (11%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
S+ + + + ++ L AN+LRR+ + P A+D V + N++VL+DE +A R
Sbjct: 3 SLEVLSKDERKISIRLRGVPLQYANALRRICLNGVPVFAVDTVDIVENTSVLADEGLAHR 62
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
+GLIPL +D + L D D + V TLD +TR V +++L S D+ V
Sbjct: 63 LGLIPLRTDSSEFKNLAEIDPD--DPINR--VMLTLD-SGEAAETRTVLSSELVSEDSSV 117
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P+ +D I IV+L GQ +++ AYA+ G G EHAKWN
Sbjct: 118 KPI--------------SDTIPIVELAPGQRIKVEAYARLGRGTEHAKWN 153
>gi|390597050|gb|EIN06450.1| RBP11-like subunits of RNA polymerase [Punctularia strigosozonata
HHB-11173 SS5]
Length = 379
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 99/202 (49%), Gaps = 39/202 (19%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V +T L+ +V+F + + S+AN++RR+ IAE PT+AI+ V + N++V+ DE ++ R+
Sbjct: 56 VKVTRLSQRSVEFDLVGVDASIANAIRRILIAEVPTIAIEHVYVWNNTSVIVDEVLSHRL 115
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSE-CSVEFTLDVKC------------------VD 109
GL+PL D +L RD D ++ ++ F L V C V+
Sbjct: 116 GLVPLNVDPA---LLDERDPPPDDQATDRNTIVFRLHVACERKKKDSKAKGKGKEPQPVE 172
Query: 110 DQ-------TRHVTTADL----KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQE 158
+Q V + L + A P + R A N DI++ KLR GQE
Sbjct: 173 EQHPDELYVNHEVLSGQLEWVPQGDQASYEPFI-KKRPAPTN-----PDIVLAKLRPGQE 226
Query: 159 LRLRAYAKKGFGKEHAKWNPTA 180
+ + +A K GK+HAK+ P A
Sbjct: 227 IEMELHAVKSVGKDHAKFCPVA 248
>gi|389624551|ref|XP_003709929.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Magnaporthe
oryzae 70-15]
gi|351649458|gb|EHA57317.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Magnaporthe
oryzae 70-15]
gi|440471601|gb|ELQ40590.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Magnaporthe
oryzae Y34]
gi|440481959|gb|ELQ62489.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Magnaporthe
oryzae P131]
Length = 373
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 93/190 (48%), Gaps = 32/190 (16%)
Query: 18 NVKFQVEDTEL----------SVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
N++F D L S+AN+ RR+ IAE P++AI+ V + N++V+ DE +A R
Sbjct: 54 NIQFHQNDPSLASFSLIGVDASIANAFRRIMIAEIPSLAIERVFITNNTSVIQDEVLAQR 113
Query: 68 IGLIPLT-SDEVVDRIL--YSRDCT-----CVDFCSECSVEFTLDVKCV---------DD 110
+GL+PL S E + + + + R T DF +V L+VKC +D
Sbjct: 114 LGLVPLKGSKEGLRKFMKPFKRTETGGFDNSFDF---NTVNLRLNVKCTRNPDAKPGEND 170
Query: 111 QTRHVTTADLKSTDARVVPVTSRNR--DADMNEYGETDDILIVKLRKGQELRLRAYAKKG 168
+ ++ ++D VP + D DILI KLR GQ + L +A G
Sbjct: 171 PNKAYIKPNVYASDIEFVPAGQQTDYFSGDGAIVPVNPDILIAKLRPGQGIDLEMHAHIG 230
Query: 169 FGKEHAKWNP 178
+G +HAK++P
Sbjct: 231 YGWDHAKFSP 240
>gi|358365562|dbj|GAA82184.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Aspergillus kawachii IFO 4308]
Length = 373
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + S+AN+ RR+ +AE P++AI++V + N++V+ DE +A R+GLIPL S E +
Sbjct: 66 FSLIGVDASIANAFRRILMAEVPSIAIEYVFVHNNTSVIQDEVLAQRLGLIPLKGSVEGI 125
Query: 80 DRILYSRDCTCVDFCSECSVEFT-----LDVKCV---------DDQTRHVTTADLKSTDA 125
+ + + + T D ++ LDV+C DD + A + + D
Sbjct: 126 NWMRWFKKPTDDDPNGSNPADYNTIVLRLDVECTKNPNADPEEDDPRKLYKNAHVYAKDI 185
Query: 126 RVVPVTSRNR--DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
PV + + D DIL+ KLR GQ + + + KG G +HAK++P A
Sbjct: 186 TFHPVGRQEQFFAGDDAIQPVNPDILVAKLRPGQSIEMELHCIKGIGADHAKFSPVA 242
>gi|294891094|ref|XP_002773417.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239878570|gb|EER05233.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 365
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 18/161 (11%)
Query: 29 SVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC 88
+AN+LRR+ IAE PT+AI+ + N+ V+ DE +A R+GL+P+ D +D L RD
Sbjct: 76 PIANALRRIMIAEIPTIAIEKCYVYQNTGVIHDEILAHRLGLVPIYCD--IDS-LKMRD- 131
Query: 89 TCVDFCSECS---------VEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRN--RDA 137
D E + F+L+ C + + S D + VP+ + R
Sbjct: 132 --EDAPPEQRDDVTDPDTWICFSLEKVCPQSHPPR-ESMPVYSGDLKWVPLNAEQEERYK 188
Query: 138 DMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
D DD+LI KLR GQEL ++ + KG GK HAKW+P
Sbjct: 189 DDPPRPVYDDVLITKLRCGQELEIKCFCCKGIGKIHAKWSP 229
>gi|255933139|ref|XP_002558040.1| Pc12g12250 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582659|emb|CAP80852.1| Pc12g12250 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 374
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 94/182 (51%), Gaps = 26/182 (14%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + +VAN+ RR+ +AE PT+AI+ + N++V+ DE +ASR+GLIPL S E +
Sbjct: 66 FSLIGLDAAVANAFRRILMAEIPTIAIEDCFIHNNTSVIQDEVLASRLGLIPLKGSIEGI 125
Query: 80 DRILYSR----------DCTCVDFCSECSVEFTLDVKCV---------DDQTRHVTTADL 120
+ + + + D C DF ++ LDV+C D + T A +
Sbjct: 126 NWMHWFKKASEDGSEEEDGPC-DF---NTIVLHLDVECYKNEYADKDEQDPRKLYTNAHV 181
Query: 121 KSTDARVVPVTSRNRD--ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+ D +PV + + D DILI KLR GQ++ + + +KG G +HAK++P
Sbjct: 182 YAKDLMYMPVGRQEQYFVGDGAIAPVNPDILIAKLRPGQKIEMELHCQKGIGADHAKFSP 241
Query: 179 TA 180
A
Sbjct: 242 VA 243
>gi|242819534|ref|XP_002487338.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Talaromyces stipitatus ATCC 10500]
gi|218713803|gb|EED13227.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Talaromyces stipitatus ATCC 10500]
Length = 373
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 94/177 (53%), Gaps = 17/177 (9%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + S+AN+ RR+ IAE PT+A+++V + N++V+ DE +ASR+GLIPL S E +
Sbjct: 66 FSLVGLDASIANAFRRILIAEVPTLAVEYVYIINNTSVIQDEVLASRLGLIPLKGSIEGL 125
Query: 80 DRILYSRDCTCVDFCSECSVEFT-----LDVKCVDDQTRHVTTAD--LKSTDARVVP--V 130
+ + + + T D +F L+V+C ++ D ++ +A + +
Sbjct: 126 NWMQWFKKPTEEDPKGSEPSDFNTVVLRLNVECSVNEKAPPGAEDPRIRYHNAHIYARDI 185
Query: 131 TSRNRDADMNEY---GE----TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
T + N + GE DILI KLR GQ + L + KG G +HAK++P A
Sbjct: 186 TFHPQGRQTNYFTGDGEIQPVNPDILIAKLRPGQVIELEMHCVKGIGADHAKFSPVA 242
>gi|328851366|gb|EGG00521.1| hypothetical protein MELLADRAFT_111755 [Melampsora larici-populina
98AG31]
Length = 359
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 21/186 (11%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
++ I+ L+ ++F + + S+AN+LRR+ IAE P++AI+ V + N++++ DE +A R
Sbjct: 62 NIKISRLSSSAMEFDLVGVDASIANALRRIMIAEVPSIAIEDVFVWNNTSLVHDEVLAQR 121
Query: 68 IGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTAD--LKSTDA 125
+GLIPL D + T ++ ++ F L +C + T D + TD+
Sbjct: 122 LGLIPLKVDPRKLDMRGPEGATDMN-----TLVFKLVARCSRNPNVSKTEKDPSILYTDS 176
Query: 126 RVVPVTSRNRD-----------ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
VTS D DDIL+VK+R GQE+ + + KG GK+HA
Sbjct: 177 D---VTSGYLDWQPKGDQPALFGSQPPKAVQDDILLVKMRPGQEISIEMHCVKGIGKDHA 233
Query: 175 KWNPTA 180
K++P A
Sbjct: 234 KFSPVA 239
>gi|315425723|dbj|BAJ47379.1| DNA-directed RNA polymerase subunit D [Candidatus Caldiarchaeum
subterraneum]
gi|343484524|dbj|BAJ50178.1| DNA-directed RNA polymerase subunit D [Candidatus Caldiarchaeum
subterraneum]
Length = 215
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 21/165 (12%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E++ V D +AN+LRR+ I E PTMA++ + + NS+ +++E +A RI LIP +D
Sbjct: 9 ESITLDVTDLPHPLANALRRMIIREVPTMAVEEILVIENSSPMTNEVLAHRISLIPFITD 68
Query: 77 EVVDRILYSRDCTCVD--FCSECSVEFTLDVKCVDDQTRHVTTADLKST--DARVVPVTS 132
+D + +C+C C +C V F L + DQ V + D+K D +V P
Sbjct: 69 --LDNFNVAEECSCQSRLGCEKCVVRFVLRAEAA-DQPVTVYSRDIKPERHDTKVAPFDG 125
Query: 133 RNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
+I IV L Q++ L Y + G G++HAKW
Sbjct: 126 --------------NIPIVVLAPRQKIELELYVRLGRGRKHAKWQ 156
>gi|296422447|ref|XP_002840772.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636995|emb|CAZ84963.1| unnamed protein product [Tuber melanosporum]
Length = 377
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 14/175 (8%)
Query: 20 KFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD--- 76
+F + T+ ++AN+LRR+ IAE PT+AI+ V + N++++ DE +A R+GLIPL D
Sbjct: 59 QFDLIHTDAAIANTLRRIMIAEVPTLAIESVYVSNNTSIIQDEVLAHRLGLIPLCGDKDA 118
Query: 77 -EVVDRILYSRDCTCVDFCSECSVEFTL--------DVKCVD-DQTRHVTTADLKSTDAR 126
+ + L D + E +V L D K D D + ++ ++D
Sbjct: 119 LKGLSWYLRGEDSAPREPTDEDTVVLYLKKACERNPDAKKTDTDPDKLYINHNVYASDIL 178
Query: 127 VVPVTSRNRDADMNEY-GETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
P + + + DILI KLR GQE+ L + KG G++HAK++P A
Sbjct: 179 FEPAGRQIKSFAHDPVRAANPDILIAKLRPGQEIDLTMHCIKGIGQDHAKFSPVA 233
>gi|169774489|ref|XP_001821712.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Aspergillus
oryzae RIB40]
gi|238496959|ref|XP_002379715.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus flavus NRRL3357]
gi|83769575|dbj|BAE59710.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694595|gb|EED50939.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus flavus NRRL3357]
Length = 373
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 31/184 (16%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD 80
F + + S+AN+ RR+ +AE P++AI++V + N++V+ DE +A R+GLIPL VD
Sbjct: 66 FSLIGVDASIANAFRRIVMAEVPSVAIEFVFVHNNTSVIQDEVLAQRLGLIPLKGS--VD 123
Query: 81 RILYSR--------DCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTS 132
I + R D D ++ LD++C + AD D R + +
Sbjct: 124 GINWMRWFKKATEDDPEGSDPSDYNTIVLRLDIECTKN-----PNADATENDPRKLYKNA 178
Query: 133 R--NRDADMNEYGETD--------------DILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
RD + G + DILI KLR GQ++ L + KG G +HAK+
Sbjct: 179 HVYARDITFHPVGRQEQFFTGEDAIQPVNPDILIAKLRPGQKIDLEMHCIKGIGADHAKF 238
Query: 177 NPTA 180
+P A
Sbjct: 239 SPVA 242
>gi|310800375|gb|EFQ35268.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Glomerella graminicola M1.001]
Length = 372
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 17/176 (9%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVV 79
F + + S+AN+ RR+ IAE PT+AI+ V +E N++V+ DE +A R+GLIP T + E +
Sbjct: 67 FSLIGVDASIANAFRRILIAEIPTIAIENVYIENNTSVIQDEVLAHRLGLIPFTGNPEGI 126
Query: 80 DRIL--YSR-DCTCVDFCSECSVEFTLDVKCV---------DDQTRHVTTADLKSTDARV 127
+ L Y + + +V+ L V+C D + + + + D
Sbjct: 127 HKFLKWYRKPEHGGKGSFDYNTVQLRLRVECTRNPDAAPGETDPNKAFLNSSVYAKDIEF 186
Query: 128 VPVTSRNRDADMNE---YGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
VP T R + E DIL+ KLR GQ + L + KG G +HAK++P A
Sbjct: 187 VP-TGRQLEFFSGEDAIRPVNPDILVAKLRPGQCIELDMHMHKGIGADHAKFSPVA 241
>gi|226287322|gb|EEH42835.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Paracoccidioides brasiliensis Pb18]
Length = 380
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 91/179 (50%), Gaps = 19/179 (10%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + S+AN+ RR+ I+E P++AI+ V + N++V+ DE +A R+GL+PLT S E +
Sbjct: 66 FSLIGVDASIANAFRRILISEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPEGI 125
Query: 80 DRILYSRDCTCVDFCSEC------SVEFTLDVKCV---------DDQTRHVTTADLKSTD 124
+ + + R D S ++ L+V+C D + + A + + D
Sbjct: 126 NWLRWFRQPNEGDPSSGSELADYNTIVLHLNVECKKNPKASPDEQDPLKLYSHAHVYAKD 185
Query: 125 ARVVPVTSRNR---DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
PV + + D DIL+ KLR GQ++ + + KG G +HAK++P A
Sbjct: 186 ITFQPVGRQEAYFPEPDGGIRPTNPDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVA 244
>gi|145349074|ref|XP_001418965.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579195|gb|ABO97258.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 360
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 26/192 (13%)
Query: 11 ITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGL 70
+T +E F++E + AN+ RR+ ++E PTMAI+ V + N++V++DE A R+GL
Sbjct: 53 LTTSDEERCVFELEGCSPAFANAFRRIILSEVPTMAIEKVFVVNNTSVVADEVFAHRLGL 112
Query: 71 IPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKC-----VDDQTRHVTTADLKSTDA 125
+P+ +D + D ++ + V+C D V + S
Sbjct: 113 VPIKADPAMFEYRGEGDAA----NETNTIVLKMHVRCHKERNPDGTLGEVVNRSVYSNAL 168
Query: 126 RVVPVTSRNRDADMNEYGE-----------------TDDILIVKLRKGQELRLRAYAKKG 168
P S+ + + +Y + DDIL+VKL GQE+ L + KG
Sbjct: 169 TWCPEGSQLPEENGAKYSDFKRSQKEVVGDQELGCVHDDILLVKLAPGQEVELECHCVKG 228
Query: 169 FGKEHAKWNPTA 180
G+EHAKW+P
Sbjct: 229 IGQEHAKWSPVG 240
>gi|358055076|dbj|GAA98845.1| hypothetical protein E5Q_05533 [Mixia osmundae IAM 14324]
Length = 368
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 24/194 (12%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ Q + I L+ ++F + + ++AN+LRR+ IAE PT+AI+ V + N++++ DE
Sbjct: 58 FKAQLGISILSLSPSEIEFDIIGIDAAIANALRRIMIAEVPTVAIETVFVFNNTSIVQDE 117
Query: 63 FIASRIGLIPLT-SDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK 121
++ R+GL+PL + +D + D D +V F+L KC + R D K
Sbjct: 118 VLSQRLGLVPLKINPRQID--FKTPDEGPTDL---NTVVFSLLAKC---EHRPGHDPDEK 169
Query: 122 STDARVVPVTSRNRDADMNEYGE---------------TDDILIVKLRKGQELRLRAYAK 166
D + + + G DDIL+ KLR GQ + + +
Sbjct: 170 DPDELYIDSNVFSGKLEWKPQGAQESMFDTDATRPRPVQDDILLAKLRPGQTISVELHCN 229
Query: 167 KGFGKEHAKWNPTA 180
KG GK HAKW+P A
Sbjct: 230 KGNGKTHAKWSPVA 243
>gi|312382270|gb|EFR27786.1| hypothetical protein AND_05113 [Anopheles darlingi]
Length = 259
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 19/178 (10%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ Q + + + ++F + ++AN RR+ ++E P+MAI+ V + N++++ DE
Sbjct: 37 FKQQLQIVVVRYEENELEFDMIGVNPAIANVFRRLMLSEVPSMAIEKVHIYNNTSIIQDE 96
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS 122
+A R+GLIPL +D R+ + ++ S+EF L VKC T + S
Sbjct: 97 VLAHRLGLIPLRADP---RMFEYKANETDPPTAQDSLEFELKVKC--------TRKNKDS 145
Query: 123 TDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
T+ RN + I K+R G E ++ +A KG GK+HAK++P A
Sbjct: 146 TEVTNNDNMYRNHSIYSGQ--------INKMRPGHEFDIKLFAVKGIGKDHAKFSPVA 195
>gi|134056600|emb|CAK47675.1| unnamed protein product [Aspergillus niger]
Length = 359
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 92/182 (50%), Gaps = 27/182 (14%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + S+AN+ RR+ +AE P++AI++V + N++V+ DE +A R+GLIPL S E +
Sbjct: 66 FSLIGVDASIANAFRRILMAEVPSIAIEYVFVHNNTSVIQDEVLAQRLGLIPLKGSVEGI 125
Query: 80 DRILYSRDCTCVDFCSECSVEFT-----LDVKCVDDQTRHVTTADLKSTDARVVPVTSR- 133
+ + + + T D ++ LDV+C + AD + TD R + +
Sbjct: 126 NWMRWFKKPTDDDPNGSSPADYNTIVLRLDVECTKN-----PNADPEETDPRKLYKNAHV 180
Query: 134 -NRDADMNEYGETD--------------DILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+D + G + DIL+ KLR GQ + + + KG G +HAK++P
Sbjct: 181 YAKDITFHPVGRQEQFFAGDDAIQPVNPDILVAKLRPGQAIEMELHCIKGIGADHAKFSP 240
Query: 179 TA 180
A
Sbjct: 241 VA 242
>gi|317026864|ref|XP_001399683.2| DNA-directed RNA polymerases I and III subunit RPAC1 [Aspergillus
niger CBS 513.88]
gi|350634564|gb|EHA22926.1| hypothetical protein ASPNIDRAFT_206792 [Aspergillus niger ATCC
1015]
Length = 373
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 92/182 (50%), Gaps = 27/182 (14%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + S+AN+ RR+ +AE P++AI++V + N++V+ DE +A R+GLIPL S E +
Sbjct: 66 FSLIGVDASIANAFRRILMAEVPSIAIEYVFVHNNTSVIQDEVLAQRLGLIPLKGSVEGI 125
Query: 80 DRILYSRDCTCVDFCSECSVEFT-----LDVKCVDDQTRHVTTADLKSTDARVVPVTSR- 133
+ + + + T D ++ LDV+C + AD + TD R + +
Sbjct: 126 NWMRWFKKPTDDDPNGSSPADYNTIVLRLDVECTKN-----PNADPEETDPRKLYKNAHV 180
Query: 134 -NRDADMNEYGETD--------------DILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+D + G + DIL+ KLR GQ + + + KG G +HAK++P
Sbjct: 181 YAKDITFHPVGRQEQFFAGDDAIQPVNPDILVAKLRPGQAIEMELHCIKGIGADHAKFSP 240
Query: 179 TA 180
A
Sbjct: 241 VA 242
>gi|358378075|gb|EHK15758.1| hypothetical protein TRIVIDRAFT_38208 [Trichoderma virens Gv29-8]
Length = 371
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 93/190 (48%), Gaps = 22/190 (11%)
Query: 10 HITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIG 69
H +L D F + + S+AN+ RR+ IAE PT+AI+ V +E N++V+ DE +A R+G
Sbjct: 54 HRNELND--ASFSLIGIDASLANAFRRILIAEIPTLAIEDVYIENNTSVIQDEVLAHRLG 111
Query: 70 LIPLTSD-EVVDRIL--YSRDCTCVDFCSEC----SVEFTLDVKCV---------DDQTR 113
LIP E + L Y + D + +V L++ C +D +
Sbjct: 112 LIPFNGGREGIHNFLKWYKKPEAGEDAYANSFDWNTVRLELNITCTVNPDASPNENDPLK 171
Query: 114 HVTTADLKSTDARVVPVTSRNRD--ADMNEYGETD-DILIVKLRKGQELRLRAYAKKGFG 170
A + + D VP T R + + N T+ DILI KLR Q + L + KG G
Sbjct: 172 AYNHAHVYAKDIVFVP-TGRQVEYFSGENAIAPTNPDILIAKLRPKQTINLAMHMHKGIG 230
Query: 171 KEHAKWNPTA 180
+H+K++P A
Sbjct: 231 ADHSKFSPVA 240
>gi|367019632|ref|XP_003659101.1| hypothetical protein MYCTH_62866 [Myceliophthora thermophila ATCC
42464]
gi|347006368|gb|AEO53856.1| hypothetical protein MYCTH_62866 [Myceliophthora thermophila ATCC
42464]
Length = 374
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 91/178 (51%), Gaps = 18/178 (10%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + S+AN+ RR+ IA+ PT+AI+ V + N++V+ DE +A R+GLIP + +
Sbjct: 66 FSLIGIDASIANAFRRIMIADIPTLAIETVFVNNNTSVIQDEVLAHRLGLIPFKGGHKGL 125
Query: 80 DRIL--YSR--DCTCVD--FCSECSVEFTLDVKCVD---------DQTRHVTTADLKSTD 124
+ L + R D + V+ + +V L+VKC D T+ A + + D
Sbjct: 126 HKFLKFWRRPDDESQVNNSYYDYNTVSLRLEVKCEHNENAAPGETDPTKLYKHAHVYARD 185
Query: 125 ARVVPVTSRNR--DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
PV + + D DILI KLR GQE+ L + KG G +HAK++P A
Sbjct: 186 IEFCPVGRQTKYFSGDDAIAPVNPDILIAKLRPGQEISLTMHMHKGVGSDHAKFSPVA 243
>gi|332030550|gb|EGI70238.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Acromyrmex
echinatior]
Length = 371
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 92/173 (53%), Gaps = 16/173 (9%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
++F + S+ N+ RR ++E P+MAI+ V + N++++ DE +A R+GLIPL +D
Sbjct: 1 MEFDISGCHTSLVNAFRRTLLSEVPSMAIEKVYIINNTSLIQDEVLAHRLGLIPLRAD-- 58
Query: 79 VDRIL-YS-RDCTCVDFCSEC-SVEFTLDVKC-VDDQTRH--------VTTADLKSTDAR 126
R+ YS D D S+ ++ + L V C ++ Q + + S D +
Sbjct: 59 -PRLFEYSPNDKKTDDTVSDNDTLRYELKVTCNINPQAPKNSRLPEDMYKNSKVYSKDIK 117
Query: 127 VVPVTSRNRDADMNEYG-ETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
VP+ + + G +DILI K+R G E+ L +A KG GK+HAK++P
Sbjct: 118 WVPIGRQAEKFKAEQIGILENDILICKMRPGHEIHLFMHAVKGIGKDHAKFSP 170
>gi|425767889|gb|EKV06440.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Penicillium digitatum Pd1]
gi|425769702|gb|EKV08188.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Penicillium digitatum PHI26]
Length = 374
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 18/178 (10%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + +VAN+ RR+ +AE PT+AI+ + N++V+ DE +A R+GLIPL S E +
Sbjct: 66 FSLIGLDPAVANAFRRILMAEIPTIAIEDCFIHNNTSVIQDEVLAQRLGLIPLKGSIEGI 125
Query: 80 DRILY----SRDCTCVD--FCSECSVEFTLDVKCV---------DDQTRHVTTADLKSTD 124
+ + + S D T + C ++ LDV+C D + T A + + D
Sbjct: 126 NWMHWYKKASEDGTEEEDGPCDFNTIVLHLDVECYKNEYADKDEQDPRKLYTNAHVYAKD 185
Query: 125 ARVVPVTSRNRD--ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+PV + + D DILI KLR GQ++ + + +KG G +HAK++P A
Sbjct: 186 LMYMPVGRQEQYFVGDGAIAPVNPDILIAKLRPGQKIEMELHCQKGIGADHAKFSPVA 243
>gi|71423439|ref|XP_812461.1| DNA-directed RNA polymerase, alpha subunit [Trypanosoma cruzi
strain CL Brener]
gi|70877243|gb|EAN90610.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
cruzi]
Length = 393
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 7/168 (4%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E + F VE +AN RR+ + E P +A D + +E N +V+ DE +A RIGL+P+
Sbjct: 101 ETMTFDVERISPPIANMFRRLMMTEVPVLAFDRMLIEENDSVVPDELLAHRIGLVPIAGP 160
Query: 77 EVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNR- 135
V ++ + + V F + L + + R + + S D + P+ +
Sbjct: 161 --VLKMQFVTESNQVGF-DALDPQRVLVFELAAEGRRDAKSTSVYSGDLKWKPLPGQEAW 217
Query: 136 --DADMNE-YGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
AD + + DI++ KL GQ L+LRA A KG G HAKW P +
Sbjct: 218 ATGADEDRVFLVHPDIILTKLGPGQRLKLRAIALKGIGGVHAKWTPVS 265
>gi|167044152|gb|ABZ08834.1| putative RNA polymerase Rpb3/RpoA insert domain protein [uncultured
marine crenarchaeote HF4000_APKG5E24]
Length = 200
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 86/175 (49%), Gaps = 37/175 (21%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
S+ I D+ + ++ L AN+LRR+ + P AID V + NS+V+ DE +A
Sbjct: 3 SIQILTSDDKKISIKLIGISLHYANALRRICLNGVPIFAIDTVDIIENSSVIPDEGLALT 62
Query: 68 IGLIPLTS-----DEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS 122
+G+IPL + DE R++ D SE + + T+ VT+A+L+S
Sbjct: 63 LGMIPLKTELNGFDESNSRVILVLD-------SEAA-----------ETTKIVTSAELES 104
Query: 123 TDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
D V P++ + I IV L GQ ++L AYA+ G G EHAKWN
Sbjct: 105 KDQVVKPISKQ--------------IPIVHLAPGQRIKLEAYARLGRGTEHAKWN 145
>gi|119719198|ref|YP_919693.1| RNA polymerase, insert [Thermofilum pendens Hrk 5]
gi|119524318|gb|ABL77690.1| DNA-directed RNA polymerase, subunit D [Thermofilum pendens Hrk 5]
Length = 283
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 15/163 (9%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVV 79
F + +T + AN+LRR I+E P +AID V + N++ L DE IA R+ L+PL D E
Sbjct: 11 FMLRNTTPAFANALRRALISEVPILAIDEVIVTENTSALWDEMIAHRLALVPLKIDPETY 70
Query: 80 D--RILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDA 137
D R LY + + V F+L+ + ++ R V + L+ P+ +
Sbjct: 71 DALRDLYEQG-------KDPQVIFSLEEEA-GERPRTVLSGHLRFEGIEGAPLPPESAGI 122
Query: 138 DMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ + +I I+KL KGQ++ L A A+ G G++HAKW P
Sbjct: 123 E----PVSKNIPILKLGKGQKISLTAIARMGTGRQHAKWQPVG 161
>gi|71656797|ref|XP_816940.1| DNA-directed RNA polymerase, alpha subunit [Trypanosoma cruzi
strain CL Brener]
gi|70882101|gb|EAN95089.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
cruzi]
Length = 393
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 7/168 (4%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E + F VE +AN RR+ + E P +A D + +E N +V+ DE +A RIGL+P+
Sbjct: 101 ETMTFDVERISPPIANMFRRLMMTEVPVLAFDRMLIEENDSVVPDELLAHRIGLVPIAGP 160
Query: 77 EVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNR- 135
V ++ + + V F + L + + R + + S D + P+ +
Sbjct: 161 --VLKMQFVTESNQVGF-DALDPQRVLVFELAAEGRRDAKSTSVYSGDLKWKPLPGQEAW 217
Query: 136 --DADMNE-YGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
AD + + DI++ KL GQ L+LRA A KG G HAKW P +
Sbjct: 218 ATGADEDRVFLVHPDIILTKLGPGQRLKLRAIALKGIGGVHAKWTPVS 265
>gi|407847030|gb|EKG02938.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
cruzi]
Length = 393
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 7/168 (4%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E + F VE +AN RR+ + E P +A D + +E N +V+ DE +A RIGL+P+
Sbjct: 101 ETMTFDVERISPPIANMFRRLMMTEVPVLAFDRMLIEENDSVVPDELLAHRIGLVPIAGP 160
Query: 77 EVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNR- 135
V ++ + + V F + L + + R + + S D + P+ +
Sbjct: 161 --VLKMQFVTESNQVGF-DALDPQRVLVFELAAEGRRDAKSTSVYSGDLKWKPLPGQEAW 217
Query: 136 --DADMNE-YGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
AD + + DI++ KL GQ L+LRA A KG G HAKW P +
Sbjct: 218 ATGADEDRVFLVHPDIILTKLGPGQRLKLRAIALKGIGGVHAKWTPVS 265
>gi|167044506|gb|ABZ09181.1| putative RNA polymerase Rpb3/RpoA insert domain protein [uncultured
marine crenarchaeote HF4000_APKG6J21]
Length = 200
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 86/175 (49%), Gaps = 37/175 (21%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
S+ I D+ + ++ L AN+LRR+ + P AID V + NS+V+ DE +A
Sbjct: 3 SIQILTSDDKKISIKLIGISLHYANALRRICLNGVPIFAIDTVDIIENSSVIPDEGLALT 62
Query: 68 IGLIPLTS-----DEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS 122
+G+IPL + DE R++ D SE + + T+ VT+A+L+S
Sbjct: 63 LGMIPLKTELNGFDESNSRVILVLD-------SEAA-----------ETTKIVTSAELES 104
Query: 123 TDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
D V P++ + I IV L GQ ++L AYA+ G G EHAKWN
Sbjct: 105 KDQVVKPISKQ--------------IPIVHLAPGQRIKLEAYARLGRGTEHAKWN 145
>gi|307206448|gb|EFN84486.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Harpegnathos
saltator]
Length = 390
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 18/167 (10%)
Query: 29 SVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC 88
++ N+ RR+ ++E P+MAI+ V + N++V+ DE +A R+GLIPL +D + S
Sbjct: 76 ALVNAFRRILLSEVPSMAIEKVYVINNTSVVQDEVLAHRLGLIPLRADPRLFEYPPSNGR 135
Query: 89 TCVDFCSECSVEFTLDVKCVDDQTRH---------VTTADLKSTDARVVPVTSRNRDADM 139
+ + ++ + L V C + + + + S D + VP+ R A+M
Sbjct: 136 KDDEVSDQDTLRYELKVACTKNPQKSQDSQLPEEIYKNSSVYSKDIKWVPI---GRQAEM 192
Query: 140 NEYGE------TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
G +DILI K+R G E+ + +A KG K+HAK++P +
Sbjct: 193 FPNGAEQLGVLENDILISKMRPGHEIHVYMHAFKGISKDHAKYSPLS 239
>gi|115384348|ref|XP_001208721.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Aspergillus terreus NIH2624]
gi|114196413|gb|EAU38113.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Aspergillus terreus NIH2624]
Length = 374
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 18/176 (10%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + ++AN+ RR+ +AE PT+AI++V + N++V+ DE +A R+GLIPL S E +
Sbjct: 66 FSLVGLDAAIANAFRRILMAEVPTLAIEYVFVHNNTSVIQDEVLAQRLGLIPLKGSVEGI 125
Query: 80 DRILYSRDCTCVDFCSEC------SVEFTLDVKCV---------DDQTRHVTTADLKSTD 124
+ + + + T D S ++ LDV+C DD + A + + D
Sbjct: 126 NWMRWFKKPTDDDPESGSTPSDYNTIVLRLDVECTKNPNAAKDEDDPRKLYRNAHVYAKD 185
Query: 125 ARVVPVTSRNR--DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
PV + + D DILI KLR GQ++ + + KG G +HAK++P
Sbjct: 186 ITFHPVGRQEQFFTGDDAIQPVNPDILIAKLRPGQKISMELHCIKGIGADHAKFSP 241
>gi|407407741|gb|EKF31429.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
cruzi marinkellei]
Length = 393
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 7/168 (4%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E + F VE +AN RR+ + E P +A D + +E N +V+ DE +A RIGL+P+
Sbjct: 101 ETMTFDVERISPPIANMFRRLMMTEVPVLAFDRMLIEENDSVVPDEILAHRIGLVPIAGP 160
Query: 77 EVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNR- 135
V ++ + + V F + L + + R + + S D + P+ +
Sbjct: 161 --VLKMQFVTESNQVGF-DALDPQRVLVFELAAEGRRDAKSTSVYSGDLKWKPLPGQEAW 217
Query: 136 --DADMNE-YGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
AD + + DI++ KL GQ L+LRA A KG G HAKW P +
Sbjct: 218 ATGADEDRVFLVHPDIILTKLGPGQRLKLRAIALKGIGGVHAKWTPVS 265
>gi|428166654|gb|EKX35626.1| hypothetical protein GUITHDRAFT_90183 [Guillardia theta CCMP2712]
Length = 375
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 21/189 (11%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I ++ ++ + F + E+++ANS+RRV +AE PTMAI+ V + N+ VL DE +A R+
Sbjct: 53 MKILEIKEDQMSFDLSGIEVALANSIRRVLLAEVPTMAIEKVFVYNNTGVLRDELVAQRL 112
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV-------------DDQTRHV 115
GLIP+ +D + +S E + L+ + + D +
Sbjct: 113 GLIPIMADPEI----FSWPSAEAKGADETTNLDKLEKEVIKFKLKVKCKKPPHDSADKEP 168
Query: 116 TTADLKSTDARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRAYAKKGFG---K 171
+ S+ +P+ + + DDILI +LR GQEL + + KG +
Sbjct: 169 INGKVFSSQLEWIPIGKQAETFKSSPPAPVHDDILITRLRPGQELDMEMHCHKGNNCGDR 228
Query: 172 EHAKWNPTA 180
HAKW+P A
Sbjct: 229 GHAKWSPVA 237
>gi|291396258|ref|XP_002714740.1| PREDICTED: RNA polymerase I subunit [Oryctolagus cuniculus]
Length = 358
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 100/199 (50%), Gaps = 35/199 (17%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAET------------PTMAIDWVQLEANS 56
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVSAGPVTAGAWGMPTMAVEKVLVYNNT 110
Query: 57 TVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVT 116
+++ DE +A R+GLIP+ +D R+ R+ + +++F L V+C TR+
Sbjct: 111 SIVQDEILAHRLGLIPIHADP---RLFEYRNQGDDEGTEIDTLQFRLQVRC----TRNPH 163
Query: 117 TADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDILIVKLRKGQELRL 161
A S+D + V + AD+ G DDILI +LR GQE+ L
Sbjct: 164 AAK-DSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDL 222
Query: 162 RAYAKKGFGKEHAKWNPTA 180
+ KG GK+HAK++P A
Sbjct: 223 LMHCVKGIGKDHAKFSPVA 241
>gi|385302721|gb|EIF46838.1| dna-directed rna polymerases i and iii 40 kda polypeptide [Dekkera
bruxellensis AWRI1499]
Length = 340
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 97/182 (53%), Gaps = 10/182 (5%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
++I+ +T+ F + + S+AN+ RR+ I+E P++AI++V + N++V+ DE +A R+
Sbjct: 46 LNISYITERTANFDLIGLDTSIANAFRRIMISEVPSVAIEFVYMFNNTSVIQDEVLAHRL 105
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCV--------DDQTRHV-TTAD 119
GL+PL D + + F E ++ +L+V C D++ ++ ++
Sbjct: 106 GLVPLKVDPDLLSWVDPNAEEKEKFTDENTIVLSLNVSCTRNPNAVKGDNRPENLYKNSN 165
Query: 120 LKSTDARVVPVTSRNRDADMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+ + D + P + + D +IL+ KLR GQE+ LRA+ G +HAK++P
Sbjct: 166 VYAKDLKFEPQGRQVETFKDHPVVPCDPNILLAKLRPGQEISLRAHCVLGIXADHAKFSP 225
Query: 179 TA 180
A
Sbjct: 226 VA 227
>gi|448414206|ref|ZP_21577345.1| DNA-directed RNA polymerase subunit D [Halosarcina pallida JCM
14848]
gi|445682499|gb|ELZ34916.1| DNA-directed RNA polymerase subunit D [Halosarcina pallida JCM
14848]
Length = 260
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 31/169 (18%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + D +F V +VAN +RR IA+ PT ++D V+ NS+V+ DE I R+
Sbjct: 7 VEFIERDDRKARFLVRGMTPAVANGIRRAMIADVPTFSVDTVRFVENSSVMFDEMIGLRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+D DF V LDV+ + D++++D V
Sbjct: 67 GLVPLTTD-------------LGDFEEGDVVTLALDVEG----PATAYSGDIETSDGLVQ 109
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD N + I++L++GQ L L A A G GKEHAK
Sbjct: 110 P-------ADQN-------VPIIELKEGQRLELEADAVLGRGKEHAKHQ 144
>gi|303323289|ref|XP_003071636.1| DNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111338|gb|EER29491.1| DNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|320035278|gb|EFW17220.1| RNA polymerase [Coccidioides posadasii str. Silveira]
Length = 382
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 21/180 (11%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + +VAN+ RR+ IAE P++AI++V + N++VL DE ++ R+GL+PL S E +
Sbjct: 66 FSLIGVDAAVANAFRRILIAEIPSLAIEFVFIHNNTSVLHDEVLSHRLGLVPLKGSLEGI 125
Query: 80 DRILYSR--DCTCVDFCSECS----VEFTLDVKCV---------DDQTRHVTTADLKSTD 124
+ + + R D S S + L+V+C DD T+ A + + D
Sbjct: 126 NWMSWFRMPKEGEPDSGSPASDSNTIVLKLNVECTKNQNARPDEDDPTKLYNNAHVYAKD 185
Query: 125 ARVVPVTSRNRDADMNEYG----ETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
PV R +G DIL+ KLR GQ++ + + KG G++HAK++P A
Sbjct: 186 IVFEPV-GRQAAIFSGPHGVIQPAYPDILLAKLRPGQKIDIEMHCIKGIGQDHAKFSPVA 244
>gi|400602680|gb|EJP70282.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Beauveria bassiana ARSEF 2860]
Length = 384
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 22/195 (11%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
SVH + F + + S+AN+ RR+ IAE PT+AI+ V +E N++V+ DE +A R
Sbjct: 60 SVHFHQNEQFDASFSLVGLDASLANAFRRIMIAEIPTLAIENVFIENNTSVIQDEVLAHR 119
Query: 68 IGLIPLTS--DEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
+GLIP + ++D + + + T D D V + TA+ +
Sbjct: 120 LGLIPFKGGREGLLDFLKWHKKPTDGDDDDNDDSAGGFDFDTVRLELNVTCTANADAAPG 179
Query: 126 RVVPVTSRN------RDADMNEYGETD--------------DILIVKLRKGQELRLRAYA 165
P + + RD + GE + DILI K+R Q + L +
Sbjct: 180 ETDPTKAYHHAHVYARDIVFSPMGEQERYFSGADAIAPVNPDILIAKMRPKQTINLSMHM 239
Query: 166 KKGFGKEHAKWNPTA 180
KG G +HAK++P A
Sbjct: 240 HKGIGSDHAKFSPVA 254
>gi|119189173|ref|XP_001245193.1| hypothetical protein CIMG_04634 [Coccidioides immitis RS]
gi|392868091|gb|EAS33833.2| DNA-directed RNA polymerase I and III polypeptide [Coccidioides
immitis RS]
Length = 382
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 21/180 (11%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + +VAN+ RR+ IAE P++AI++V + N++VL DE ++ R+GL+PL S E +
Sbjct: 66 FSLIGVDAAVANAFRRILIAEIPSLAIEFVFIHNNTSVLHDEVLSHRLGLVPLKGSLEGI 125
Query: 80 DRILYSR--DCTCVDFCSECS----VEFTLDVKCV---------DDQTRHVTTADLKSTD 124
+ + + R D S S + L+V+C DD T+ A + + D
Sbjct: 126 NWMSWFRMPKEGEPDSGSPASDSNTIVLKLNVECTKNQNARPDEDDPTKLYNNAHVYAKD 185
Query: 125 ARVVPVTSRNRDADMNEYG----ETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
PV R +G DIL+ KLR GQ++ + + KG G++HAK++P A
Sbjct: 186 IVFEPV-GRQAAFFSGPHGVIQPAYPDILLAKLRPGQKIDIEMHCIKGIGQDHAKFSPVA 244
>gi|157868180|ref|XP_001682643.1| putative DNA-directed RNA polymerase,alpha subunit [Leishmania
major strain Friedlin]
gi|68126098|emb|CAJ07151.1| putative DNA-directed RNA polymerase,alpha subunit [Leishmania
major strain Friedlin]
Length = 442
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 83/189 (43%), Gaps = 25/189 (13%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E + F++++ +AN LRRV E PT+A D V +E N + + DE ++ R+GL+P+
Sbjct: 118 ERMSFEMQNVSPPIANLLRRVLTTEVPTLAFDRVLIEENDSPVLDELLSHRLGLVPVAGP 177
Query: 77 EV-VDRILYSRDCTCVDFCSECSVEFTLDVKCVDD---------QTRHVTTADLKSTDAR 126
+ + I S + + + F LD D Q + V T
Sbjct: 178 VMKMHYITESNQASFSNLDPSRVLLFELDATGAKDAAVTPVYSGQLQWVPLPGQDKTAGA 237
Query: 127 VVPVTSRNRDADMNEYGETD---------------DILIVKLRKGQELRLRAYAKKGFGK 171
V R+ G TD DIL+ KL GQ ++L+A A KGFG
Sbjct: 238 VAVACQAGREECAGAAGATDHSADEDDDAVFLVHPDILLTKLGPGQRIKLKAIAVKGFGA 297
Query: 172 EHAKWNPTA 180
HAKW+P +
Sbjct: 298 VHAKWSPVS 306
>gi|452207493|ref|YP_007487615.1| DNA-directed RNA polymerase subunit D [Natronomonas moolapensis
8.8.11]
gi|452083593|emb|CCQ36905.1| DNA-directed RNA polymerase subunit D [Natronomonas moolapensis
8.8.11]
Length = 247
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 32/174 (18%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
+ Q V + + + +F V + AN +RR +A+ PT+++D V++ NS+V+ DE
Sbjct: 2 SGQYDVTFIERDERSARFLVRGISPAFANGIRRAMVADVPTLSVDTVRVIENSSVMFDEQ 61
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
IA R+GLIPLT T D+ E +V +DV+ + DL S+
Sbjct: 62 IALRLGLIPLT--------------TPDDYEPEETVTLAIDVEG----PATAYSGDLVSS 103
Query: 124 DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
D +V P +++ I+ L++GQ L L A A+ G+GK+HAK
Sbjct: 104 DGQVQPA--------------EENVPIIDLKEGQRLELEADAELGYGKDHAKHQ 143
>gi|387595515|gb|EIJ93139.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm1]
Length = 297
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 96/166 (57%), Gaps = 16/166 (9%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E + +++ + SV N++RR I++ PT+AI WV + N TV++DE ++ R+GLIP+ +D
Sbjct: 44 EILSYRINHIDPSVLNAMRRTIISDVPTVAIHWVYIRENETVMADEILSHRLGLIPIIAD 103
Query: 77 -EVVDRILYSRDC-TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRN 134
E +R++ + + + + S++ L + + T + T ++S D +++ T
Sbjct: 104 AEDFERVVKTPELDPFTELTDKNSIQMEL---VITNNTDKILT--VRSNDIKILSKT--- 155
Query: 135 RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+A + + +++I +L G+++ R +A G G+EH+KW PT+
Sbjct: 156 -NAAIKQ-----NVIITRLVPGKKIECRLFAIIGTGREHSKWMPTS 195
>gi|406606450|emb|CCH42224.1| DNA-directed RNA polymerase [Wickerhamomyces ciferrii]
Length = 295
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 11/162 (6%)
Query: 29 SVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRILYSRD 87
S++N+ RR+ I+E P++A + V + N++V+ DE +A RIGLIPL D ++++ + S D
Sbjct: 25 SISNAFRRIMISEVPSVAAEQVYIFNNTSVIQDEVLAHRIGLIPLKIDPDLLNWVDNSVD 84
Query: 88 CTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK---------STDARVVPVTSRNRDAD 138
+ F +V TLDV C + + D K + D + P ++ +
Sbjct: 85 ESD-KFTDANTVVMTLDVSCTKNPNAPKNSTDPKELYRNSSIYARDLKFEPQGNQLENFK 143
Query: 139 MNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
DIL+ KLR GQE+ LR + G G +HAK++P +
Sbjct: 144 NPIEPADPDILLAKLRPGQEISLRIHCVLGIGSDHAKFSPVS 185
>gi|302923338|ref|XP_003053654.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734595|gb|EEU47941.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 381
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 26/182 (14%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD 80
F + + S+AN+ RR+ +AE PT+A++ V +E N++V+ DE +A R+GL+P
Sbjct: 73 FSLVGIDASLANAFRRILLAEIPTLAVENVYIENNTSVIQDEVLAHRLGLVPFKGGREGL 132
Query: 81 RIL---YSRDCTCVDFCSEC----SVEFTLDVKCV---------DDQTRHVTTADLKSTD 124
R Y + D S C +V L+V C +D + A + + D
Sbjct: 133 RDFLKWYKKPEPGEDPFSGCFDYNTVRLELNVTCTVNPDASPTENDPLKAYNNAHVYARD 192
Query: 125 ARVVPVTSRNRDADMNEYGE------TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
VP R A+ + GE DILI KLR Q + L + KG G +HAK++P
Sbjct: 193 IVFVPT---GRQAEYFD-GEDAIAPTNPDILIAKLRPRQTINLAMHMHKGIGADHAKFSP 248
Query: 179 TA 180
A
Sbjct: 249 VA 250
>gi|358391580|gb|EHK40984.1| hypothetical protein TRIATDRAFT_28889 [Trichoderma atroviride IMI
206040]
Length = 377
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 89/181 (49%), Gaps = 24/181 (13%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVV 79
F + + S+AN+ RR+ IAE PT+AI+ V +E N++V+ DE +A R+GL+P E +
Sbjct: 69 FSLIGIDASLANAFRRILIAEIPTLAIEDVFIENNTSVIQDEVLAHRLGLVPFNGGREGI 128
Query: 80 DRIL--YSRDCTCVDFCSEC----SVEFTLDVKCVDDQTRHVTTAD-LKSTD-----ARV 127
L Y + D + +V L+V C +Q T D LK+ AR
Sbjct: 129 HNFLKWYKKPAAGEDQYANSFDWNTVRLELNVTCTVNQDAAPTENDPLKAYHHAHVYARD 188
Query: 128 VPVTSRNRDADMNEY--GE------TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
+ R A EY GE DILI KLR Q + L + KG G +H+K++P
Sbjct: 189 IVFAPTGRQA---EYFSGENAIRPVNPDILIAKLRPKQTINLAMHMHKGIGADHSKFSPV 245
Query: 180 A 180
A
Sbjct: 246 A 246
>gi|148679203|gb|EDL11150.1| mCG12281 [Mus musculus]
Length = 138
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/35 (100%), Positives = 35/35 (100%)
Query: 147 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG
Sbjct: 10 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 44
>gi|116180930|ref|XP_001220314.1| hypothetical protein CHGG_01093 [Chaetomium globosum CBS 148.51]
gi|88185390|gb|EAQ92858.1| hypothetical protein CHGG_01093 [Chaetomium globosum CBS 148.51]
Length = 374
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 28/183 (15%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + S+AN+ RR+ IA+ PT+AI+ V + N++V+ DE ++ R+GLIP E +
Sbjct: 66 FSLIGIDASIANAFRRIMIADIPTLAIETVFINNNTSVIQDEVLSHRLGLIPFKGGHEGL 125
Query: 80 DRIL-YSRDCT-----CVDFCSECSVEFTLDVKCVD---------DQTRHVTTADLKSTD 124
+ L + R T + +V L+V+C D T+ A + + D
Sbjct: 126 HKFLKWWRKPTDESEINNSYYDNNTVSLRLEVQCEHNEKAAAGETDPTKLYKNAHVYARD 185
Query: 125 ARVVPVTSRNRD-------ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
PV +++ A +N DILI KLR GQE+ L + KG G +H+K++
Sbjct: 186 IEFCPVGRQDKYFSGADAIAPVN-----PDILIAKLRPGQEISLSMHMHKGVGSDHSKFS 240
Query: 178 PTA 180
P A
Sbjct: 241 PVA 243
>gi|195342596|ref|XP_002037886.1| GM18508 [Drosophila sechellia]
gi|194132736|gb|EDW54304.1| GM18508 [Drosophila sechellia]
Length = 331
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 24/163 (14%)
Query: 34 LRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF 93
LRR+ +++ P+MAI+ V + N++++ DE +A R+GL+PL +D R+ R +
Sbjct: 66 LRRMMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRMGLLPLRADP---RLFAYRTEESTEA 122
Query: 94 CSEC-SVEFTLDVKCV------DDQTRH---VTTADLKSTDARVVPVTSRNRDADMNEYG 143
+E ++EF L VKC DQ+ + S + +P + + A + Y
Sbjct: 123 GTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWLP---KGKQAQI--YS 177
Query: 144 ET------DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
E+ DDILI +LR G EL LR A KG G++HAK++P A
Sbjct: 178 ESAVNCIHDDILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVA 220
>gi|367044228|ref|XP_003652494.1| hypothetical protein THITE_2114056 [Thielavia terrestris NRRL 8126]
gi|346999756|gb|AEO66158.1| hypothetical protein THITE_2114056 [Thielavia terrestris NRRL 8126]
Length = 374
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 34/186 (18%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPL-TSDEVV 79
F + + S+AN+ RR+ IA+ PT+AI+ V + N++V+ DE ++ R+GLIP E +
Sbjct: 66 FSLIGCDASIANAFRRIMIADIPTLAIETVFINNNTSVIQDEVLSHRLGLIPFRGGKEGL 125
Query: 80 DRILY---------SRDCTCVDFCSECSVEFTLDVKC---------VDDQTRHVTTADLK 121
+ L + + DF +V L+VKC D T+ A +
Sbjct: 126 HKFLKWWRKPADESQINNSYYDF---NTVSLRLEVKCEYNEAAAPGETDPTKLYKHAHVY 182
Query: 122 STDARVVPVTSRNRD-------ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
+ D PV + + A +N DILI KLR GQE+ L + KG G +HA
Sbjct: 183 ARDIEFCPVGRQEKYFSGADAIAPVN-----PDILIAKLRPGQEISLSMHMHKGVGSDHA 237
Query: 175 KWNPTA 180
K++P A
Sbjct: 238 KFSPVA 243
>gi|429965270|gb|ELA47267.1| hypothetical protein VCUG_01263 [Vavraia culicis 'floridensis']
Length = 217
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 22/166 (13%)
Query: 11 ITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGL 70
I + T + F + + S N++RR ++E PT+AID V + N+T + +E + R+ L
Sbjct: 23 ILETTPTTINFTITPSTNSFLNAIRRTLLSEVPTIAIDLVTVHKNTTCIPNEMLVHRLSL 82
Query: 71 IPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPV 130
IPL + + +CTC C ECSV F+L+ V ++ V + L S
Sbjct: 83 IPLP----ITPLKRKEECTCNVSCPECSVTFSLNA--VSNEGMTVNASHLFSDAVD---- 132
Query: 131 TSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
T+R + LI K+ + Q +++ A A+ G KEHAK+
Sbjct: 133 TTRLKG------------LICKMGEKQSVKMTALARTGVAKEHAKF 166
>gi|408400667|gb|EKJ79744.1| hypothetical protein FPSE_00024 [Fusarium pseudograminearum CS3096]
Length = 381
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 20/179 (11%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVV 79
F + + S+AN+ RR+ ++E PT+AI+ V +E N++V+ DE +A R+GLIP E +
Sbjct: 73 FSLVGIDASLANAFRRILLSEIPTLAIENVYIENNTSVIQDEVLAHRLGLIPFKGGREGL 132
Query: 80 DRIL--YSRDCTCVDFCSEC----SVEFTLDVKCV---------DDQTRHVTTADLKSTD 124
L + + D + C +V L+V C +D + A + + D
Sbjct: 133 HNFLKWHKKPEAGDDPYAGCFDWNTVRLELNVTCTVNEEASPAENDPLKAYHNAHVYARD 192
Query: 125 ARVVPVTSRNRD--ADMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
VP T R + + N T+ DILI KLR Q + L + KG G +HAK++P A
Sbjct: 193 IVFVP-TGRQAEYFSGENAIAPTNPDILIAKLRPRQTINLAMHMHKGIGSDHAKFSPVA 250
>gi|340520524|gb|EGR50760.1| predicted protein [Trichoderma reesei QM6a]
Length = 377
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 28/183 (15%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVV 79
F + + S+AN+ RR+ IAE PT+AI+ V +E N++V+ DE +A R+GLIP E +
Sbjct: 69 FSLVGIDASLANAFRRILIAEIPTLAIEDVYIENNTSVIQDEVLAHRLGLIPFNGGREGI 128
Query: 80 DRIL--YSRDCTCVDFCSEC----SVEFTLDVKCV---------DDQTRHVTTADLKSTD 124
L Y + D + +V L+V C D + A + + D
Sbjct: 129 HNFLKWYKKPEAGEDPYANSFDWNTVRLELNVTCTVNPDASPTETDPLKAYNHAHVYAKD 188
Query: 125 ARVVP-------VTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
VP + N A +N DILI KLR Q + L + KG G +H+K++
Sbjct: 189 IVFVPTGRQVEYFSGENAIAPVN-----PDILIAKLRPKQSINLAMHMHKGIGADHSKFS 243
Query: 178 PTA 180
P A
Sbjct: 244 PVA 246
>gi|396471375|ref|XP_003838857.1| similar to DNA-directed RNA polymerases I and III subunit RPAC1
[Leptosphaeria maculans JN3]
gi|312215426|emb|CBX95378.1| similar to DNA-directed RNA polymerases I and III subunit RPAC1
[Leptosphaeria maculans JN3]
Length = 374
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 93/182 (51%), Gaps = 23/182 (12%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPL-TSDEVV 79
F + + SVAN++RR+ IAE P++AI+ V + N++++ DE +A R+GLIPL S + +
Sbjct: 64 FSLVSIDTSVANAIRRILIAEIPSLAIEDVFIYQNTSIIQDEVLAHRLGLIPLCGSCDGL 123
Query: 80 DRILYSRDCTCVDFCSECSVEFT-----LDVKCVDDQTRHVTTADLKSTD---------- 124
+ + T ++ S ++ L+ KC + Q + A TD
Sbjct: 124 RWMKWFHKATGLEDGSGTQSDYNTIVLRLNKKC-EWQDGGLQRAVAGETDPDKLYINHNV 182
Query: 125 -ARVVPVTSRNRDADMNEYGE-----TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
AR + R A M G DILI K+R GQE+ L +A KG G++HAK++P
Sbjct: 183 YARDMIWEPIGRQAQMFPPGAEIRSTNPDILIAKMRPGQEIALSMHAHKGIGQDHAKFSP 242
Query: 179 TA 180
A
Sbjct: 243 VA 244
>gi|331225845|ref|XP_003325593.1| DNA-directed RNA Polymerase III subunit C5 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309304583|gb|EFP81174.1| DNA-directed RNA Polymerase III subunit C5 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 359
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 98/183 (53%), Gaps = 17/183 (9%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I L+ +++F + + S+AN+LRR+ +AE PT+AI+ V + N++++ DE +A R+
Sbjct: 63 IKICRLSSTSMEFDLIGIDASIANALRRIMLAEVPTVAIEDVFVWNNTSLVHDEVLAQRL 122
Query: 69 GLIPLTSDEVVDRILYSR-DCTCVDFCSECSVEFTLDVKCVDDQTRHVTTAD-LKSTDAR 126
GL+PL D R++ R D D ++ F L V C + T D LK
Sbjct: 123 GLVPLKIDP---RLIDMRTDEGATDL---NTIVFKLVVNCRRNPHVPKTEKDPLKLYQNS 176
Query: 127 VVPVTS---RNRDADMNEYGE------TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
+V + + ++ +G +DI++VK+R GQE+R + KG K+HAK++
Sbjct: 177 LVTTEALEWEPKGDQVDMFGSEPPRPVQNDIVLVKMRPGQEIRAEMHCVKGIAKDHAKFS 236
Query: 178 PTA 180
P A
Sbjct: 237 PVA 239
>gi|254167792|ref|ZP_04874642.1| RNA polymerase Rpb3/Rpb11 dimerisation domain [Aciduliprofundum
boonei T469]
gi|289597072|ref|YP_003483768.1| RNA polymerase insert [Aciduliprofundum boonei T469]
gi|197623320|gb|EDY35885.1| RNA polymerase Rpb3/Rpb11 dimerisation domain [Aciduliprofundum
boonei T469]
gi|289534859|gb|ADD09206.1| RNA polymerase insert [Aciduliprofundum boonei T469]
Length = 273
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 94/187 (50%), Gaps = 36/187 (19%)
Query: 10 HITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWV--------QLEAN----ST 57
HI +L D +KF+++ SVAN+LRR I + P +AI V +E N ST
Sbjct: 4 HILELQDRYIKFEIKGITPSVANALRRTLINDIPKLAIHKVIFHHGQIRDMEGNVYDSST 63
Query: 58 VLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCV--DFCSECSVEFTLDVKCVDDQTRHV 115
L DE IA R+GLIPL +D + + +C + C C+V +TL+ +H
Sbjct: 64 PLFDEIIAHRLGLIPLPTDL---NMKFRDECDHPPDEGCPLCTVTYTLN--------KH- 111
Query: 116 TTADLKSTDARVVPVTSRNRDADMNEYGETDDIL-IVKLRKGQELRLRAYAKKGFGKEHA 174
A + S D ++PV ++ D ++ IVKL++ Q + L A A G KEHA
Sbjct: 112 GPATVYSGD--LIPVGDE-------KFKPVDPLIPIVKLKEHQAILLEAEAIMGTAKEHA 162
Query: 175 KWNPTAG 181
KW T+G
Sbjct: 163 KWQVTSG 169
>gi|452001561|gb|EMD94020.1| hypothetical protein COCHEDRAFT_1222623 [Cochliobolus
heterostrophus C5]
Length = 376
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 31/190 (16%)
Query: 18 NVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDE 77
+ +F + + SVAN+ RR+ ++E PT+AI+ V + N++++ DE +A R+GL+PL D
Sbjct: 61 DTQFSLTGIDTSVANAFRRILLSEIPTLAIEDVFIYQNTSIIQDEVLAHRLGLVPLCGDR 120
Query: 78 VVDRIL--YSR-------DCTCVDFCSECSVEFTLDVKCV-------------DDQTRHV 115
R + YS+ T D+ +V L+V+C D +
Sbjct: 121 EGLRAMKWYSKPTEEDPESGTPTDW---NTVVLRLEVECKWQEGGLQRAVAGETDPDKLY 177
Query: 116 TTADLKSTDARVVPVTSRNRDADMNEYGE-----TDDILIVKLRKGQELRLRAYAKKGFG 170
++ + D P+ R + +E G+ DILI K+R GQ + L +A KG G
Sbjct: 178 VGHNVYAKDIEFKPI-GRQAELFSSEQGKEIRSTNPDILIAKMRPGQSINLSMHAIKGIG 236
Query: 171 KEHAKWNPTA 180
++HAK++P A
Sbjct: 237 QDHAKFSPVA 246
>gi|451849744|gb|EMD63047.1| hypothetical protein COCSADRAFT_92552 [Cochliobolus sativus ND90Pr]
Length = 376
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 31/190 (16%)
Query: 18 NVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDE 77
+ +F + + SVAN+ RR+ ++E PT+AI+ V + N++++ DE +A R+GL+PL D
Sbjct: 61 DTQFSLTGIDTSVANAFRRILLSEIPTLAIEDVFIYQNTSIIQDEVLAHRLGLVPLCGDR 120
Query: 78 VVDRIL--YSR-------DCTCVDFCSECSVEFTLDVKCV-------------DDQTRHV 115
R + YS+ T D+ +V L+V+C D +
Sbjct: 121 EGLRAMKWYSKPTEEDPESGTPTDW---NTVVLRLEVECKWQEGGLQRAVAGETDPDKLY 177
Query: 116 TTADLKSTDARVVPVTSRNRDADMNEYGE-----TDDILIVKLRKGQELRLRAYAKKGFG 170
++ + D P+ R + +E G+ DILI K+R GQ + L +A KG G
Sbjct: 178 VGHNVYAKDIEFKPI-GRQAELFSSEQGKEIRSTNPDILIAKMRPGQSINLSMHAIKGIG 236
Query: 171 KEHAKWNPTA 180
++HAK++P A
Sbjct: 237 QDHAKFSPVA 246
>gi|378727237|gb|EHY53696.1| DNA-directed RNA Polymerase III subunit C5 [Exophiala dermatitidis
NIH/UT8656]
Length = 373
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 95/183 (51%), Gaps = 29/183 (15%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVV 79
F + + ++AN+ RR+ IAE PT+AI+ V ++ N++V++DE +A R+GLIPL + E +
Sbjct: 66 FSLIGVDAAIANAFRRILIAEVPTLAIEKVYVQNNTSVIADEVLAHRLGLIPLKGNIEGL 125
Query: 80 DRILYSRDCTCVDFCSEC-------SVEFTLDVKCVDDQTRHVTTADLKSTDA--RVVPV 130
+ + D +F E +V L V+C ++ H AD +T+ + +
Sbjct: 126 KWLKWFIDSNP-EFGFEGTGRADYNTVVLHLHVRC--ERNPH---ADKNATEPEEKYINS 179
Query: 131 TSRNRDADMNEYGE-------------TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
T +R G+ + DILI KLR GQE+ + +A G G +HAK++
Sbjct: 180 TVYSRHIQWEPQGQQQERFKDGPIEPVSPDILIAKLRPGQEIDMVLHAHLGIGADHAKFS 239
Query: 178 PTA 180
P A
Sbjct: 240 PVA 242
>gi|118088012|ref|XP_001234462.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 1 [Gallus gallus]
Length = 300
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 33/165 (20%)
Query: 16 DENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTS 75
D ++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+GLIP+ +
Sbjct: 52 DGVLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRA 111
Query: 76 DEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNR 135
D R+ R+ ++H+T L + T
Sbjct: 112 DP---RLFEYRNQVY---------------------SKHMTWVPLGNQ-------TDLFP 140
Query: 136 DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
DAD DDILI LR GQE+ + + KG GK+HAK++P A
Sbjct: 141 DADFRPV--HDDILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVA 183
>gi|448611952|ref|ZP_21662382.1| DNA-directed RNA polymerase subunit D [Haloferax mucosum ATCC
BAA-1512]
gi|445742713|gb|ELZ94207.1| DNA-directed RNA polymerase subunit D [Haloferax mucosum ATCC
BAA-1512]
Length = 260
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 31/172 (18%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
AN V + D +F V ++AN +RR +A+ PT +ID V+ N++V+ DE
Sbjct: 2 ANDFEVEFIEREDRRARFVVHGLTPALANGIRRAMVADVPTFSIDTVRFVENTSVMFDEM 61
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
I R+GL+PLT+ DF +V L+V D + D++S
Sbjct: 62 IGLRLGLVPLTT-------------PLDDFEPGDTVTVALEV----DGPATAYSGDIESA 104
Query: 124 DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
D +VP AD N I I++L++GQ L A A G+GK+HAK
Sbjct: 105 DDMIVP-------ADEN-------IPIIELKEGQRLEFEADAVLGYGKDHAK 142
>gi|353241596|emb|CCA73401.1| probable Rpc40-40 kD subunit of DNA-directed RNA polymerases I and
III [Piriformospora indica DSM 11827]
Length = 382
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 38/190 (20%)
Query: 14 LTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPL 73
+ +E ++F + + S+AN+ RR+ I+E PT+AI+ V + N++V+ DE ++ R+GLIPL
Sbjct: 56 VEEERIEFDLVGIDTSIANAFRRIIISEVPTVAIERVYVYDNTSVIQDEVLSHRLGLIPL 115
Query: 74 TSDEVVDRIL------YSRDCTCVDFCSECSVEFTLDVKCVD-DQTRHVTT--------A 118
D R+L Y D T ++ F+LDV C D D R TT +
Sbjct: 116 RIDP---RMLEDAPQNYQDDST-----DRNTMVFSLDVTCADRDGVRPGTTDPEKLYINS 167
Query: 119 DLKSTDARVVPVTSRN--------RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFG 170
+ + D + VP + R A+ N ILI KLR Q + L +A K G
Sbjct: 168 SVYAKDLQWVPQGEQETIFASDPPRAANPN-------ILIAKLRPEQSIHLEMHAVKSIG 220
Query: 171 KEHAKWNPTA 180
++H K++P
Sbjct: 221 RDHTKFSPVG 230
>gi|46105474|ref|XP_380541.1| hypothetical protein FG00365.1 [Gibberella zeae PH-1]
Length = 381
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 20/179 (11%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVV 79
F + + S+AN+ RR+ ++E PT+A++ V +E N++V+ DE +A R+GLIP E +
Sbjct: 73 FSLVGIDASLANAFRRILLSEIPTLAVENVYIENNTSVIQDEVLAHRLGLIPFKGGREGL 132
Query: 80 DRIL--YSRDCTCVDFCSEC----SVEFTLDVKCV---------DDQTRHVTTADLKSTD 124
L + + D + C +V L+V C +D + A + + D
Sbjct: 133 HNFLKWHKKPEAGDDPYAGCFDWNTVRLELNVTCTVNEDASPTENDPLKAYHNAHVYARD 192
Query: 125 ARVVPVTSRNRD--ADMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
VP T R + + N T+ DILI KLR Q + L + KG G +HAK++P A
Sbjct: 193 IVFVP-TGRQAEYFSGENAIAPTNPDILIAKLRPRQTINLAMHMHKGIGSDHAKFSPVA 250
>gi|429853404|gb|ELA28479.1| DNA-directed RNA polymerases i and iii 40 kda polypeptide
[Colletotrichum gloeosporioides Nara gc5]
Length = 371
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 92/198 (46%), Gaps = 25/198 (12%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+A + + + F + + S+AN+ RR IAE PT+AI+ V +E N++V+ DE
Sbjct: 48 FAENFRIQFHHNSQHDASFSLIGVDASIANAFRRTLIAEIPTVAIENVYIENNTSVIQDE 107
Query: 63 FIASRIGLIPLTSD-EVVDRIL--YSR--DCTCVDFCSECSVEFTLDVKCV--------- 108
+A R+GLIP T + E + L Y + D F +V+ L ++C
Sbjct: 108 VLAHRLGLIPFTGNPEGIHNFLKWYRKPEDGGKGSF-DYNTVQLRLRIECTRNPDASPNE 166
Query: 109 DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGE------TDDILIVKLRKGQELRLR 162
D A + + D VP R + GE DILI KLR GQ + L
Sbjct: 167 KDTNVAFNHASVYAKDIEFVP---SGRQVEFFS-GEDAIRPVNPDILIAKLRPGQCIELD 222
Query: 163 AYAKKGFGKEHAKWNPTA 180
+ KG G +HAK++P A
Sbjct: 223 MHMHKGIGADHAKFSPVA 240
>gi|322708977|gb|EFZ00554.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Metarhizium anisopliae ARSEF 23]
Length = 381
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 34/186 (18%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTS--DEV 78
F + + S+AN+ RR+ IAE PT+AI+ V +E N++V+ DE +A R+GLIP D +
Sbjct: 73 FSLMGLDASLANAFRRILIAEIPTLAIENVYIENNTSVIQDEVLAHRLGLIPFNGGRDGL 132
Query: 79 VDRILYSRD--------CTCVDFCSECSVEFTLDVKCV---------DDQTRHVTTADLK 121
+ + + + C D+ +V L+V C D A +
Sbjct: 133 KNFLKWHKKPEAEEDPYAGCFDY---NTVRLELNVTCTVNPDAAPDERDPLEAFNNAHVY 189
Query: 122 STDARVVP-------VTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
+ D VP + + A +N DILI KLR Q + L + KG G +HA
Sbjct: 190 AKDIVFVPTGKQVEFFSGEDAIAPVNP-----DILIAKLRPRQTINLSMHMHKGIGADHA 244
Query: 175 KWNPTA 180
K++P A
Sbjct: 245 KFSPVA 250
>gi|169603299|ref|XP_001795071.1| hypothetical protein SNOG_04658 [Phaeosphaeria nodorum SN15]
gi|160706369|gb|EAT88418.2| hypothetical protein SNOG_04658 [Phaeosphaeria nodorum SN15]
Length = 350
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 27/184 (14%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD 80
F + + SVAN+ RR+ +AE PT+AI+ V + N++++ DE +A R+GLIPL
Sbjct: 40 FSLTGIDTSVANAFRRILLAEIPTLAIEDVFIYQNTSIIQDEVLAHRLGLIPLCGSHKGL 99
Query: 81 RIL--YSRDC-------TCVDFCSECSVEFTLDVKCV-------------DDQTRHVTTA 118
R L Y ++ T D+ +V LDV+C D +
Sbjct: 100 RWLKWYKKETDDDEGSGTPSDY---NTVIMKLDVECSWQEGGLQRAVQGETDPDKLYIGH 156
Query: 119 DLKSTDARVVPVTSRNRDADMNE--YGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
++ + D P+ + + E DILIVK+R GQ+++L +A KG G++HAK+
Sbjct: 157 NVYAKDLVWEPLGKQFDEFPSGEEIRATNPDILIVKMRPGQKIQLSMHAIKGIGQDHAKF 216
Query: 177 NPTA 180
+P A
Sbjct: 217 SPVA 220
>gi|345492750|ref|XP_003426918.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Nasonia vitripennis]
Length = 345
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 20/178 (11%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
++F + ++AN+ RR+ ++E P+MAI+ V + N++++ DE +A R+GL+PL +D
Sbjct: 57 LEFDIIGCSAALANAYRRIMLSEVPSMAIEKVYMINNTSLIQDEVLAHRLGLLPLKAD-- 114
Query: 79 VDRILYSRDCTCVDFCSECSVEFTL--DVKCVDDQTRHVTT-----------ADLKSTDA 125
R+ T D E S + TL ++K + H ++ S D
Sbjct: 115 -PRLFEYPSKTTADE-EEVSDQDTLRYEIKAICKWNPHAPKDSRRPDDIYCGNNVYSKDI 172
Query: 126 RVVPVTSRNR---DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ P+ +N D + DDILI K+R QE+ +A KG GK+HAK++P A
Sbjct: 173 KWNPIGRQNELYPDGEKQFGMIADDILICKMRPNQEIHAYMHAVKGIGKDHAKFSPVA 230
>gi|150401521|ref|YP_001325287.1| RNA polymerase insert [Methanococcus aeolicus Nankai-3]
gi|150014224|gb|ABR56675.1| RNA polymerase insert [Methanococcus aeolicus Nankai-3]
Length = 197
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 44/167 (26%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-- 74
E +KF + +S +++LRR+ ++ PT AI+ V NS+ + DE +A R+ LIP+T
Sbjct: 14 ETLKFTIGGAPISFSSALRRIMVSSVPTYAIENVYFYENSSSMYDEILAHRLALIPITGK 73
Query: 75 ---SDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVT 131
SDEVV R ++ C V +ADL+S +V
Sbjct: 74 PVISDEVV-RFSIMKEGPCT-----------------------VYSADLESESDSMVAF- 108
Query: 132 SRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
D+I IVKL++GQ+L L A G GK HAKW P
Sbjct: 109 --------------DNIPIVKLKEGQKLELECEALVGVGKNHAKWQP 141
>gi|48478294|ref|YP_024000.1| DNA-directed RNA polymerase subunit D [Picrophilus torridus DSM
9790]
gi|55976419|sp|Q6KZP5.1|RPOD_PICTO RecName: Full=DNA-directed RNA polymerase subunit D
gi|48430942|gb|AAT43807.1| DNA-directed RNA polymerase subunit D [Picrophilus torridus DSM
9790]
Length = 271
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 94/184 (51%), Gaps = 33/184 (17%)
Query: 11 ITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQL--------EAN----STV 58
I +L D +KF + ++ANS+RR I + P +AI+ V E N S
Sbjct: 4 IIELKDNYIKFSISGITPAIANSIRRTLINDIPKLAIENVVFHHGEIRDSEGNVYDSSLP 63
Query: 59 LSDEFIASRIGLIPLTSDEVVDRILYSRDCTC-VDFCSECSVEFTLDVKCVDDQTRHVTT 117
L DE +A R+GLIPL +D ++ + C+C + C C+V+++++ +
Sbjct: 64 LFDEVVALRLGLIPLKTDL---KMNFRDQCSCNGEGCDLCTVKYSIN---------KLGP 111
Query: 118 ADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
AD+ S+D ++P+ + D+ I IVKL+KGQ + + A G GK+HAKW
Sbjct: 112 ADVFSSD--LIPIN----NPDLKPVDPM--IPIVKLKKGQAMLVTCEAIMGRGKDHAKWQ 163
Query: 178 PTAG 181
T+G
Sbjct: 164 VTSG 167
>gi|296811216|ref|XP_002845946.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Arthroderma
otae CBS 113480]
gi|238843334|gb|EEQ32996.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Arthroderma
otae CBS 113480]
Length = 380
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 20/179 (11%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + ++AN+ RR+ IAE PT+AI++V ++ N++V+ DE +A R+GLIPL S E +
Sbjct: 66 FSLIGVDAAIANAFRRILIAEIPTLAIEYVYIQNNTSVIQDEVLAHRLGLIPLKGSLEGI 125
Query: 80 DRILYSR----------------DCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
+ + + + + + EC + +D T A + +
Sbjct: 126 NWLRWFKVPKEGDPDSGSTHEDSNTIVLRLVKECKLNPNAH-PSEEDPTVLYNNAHIYAK 184
Query: 124 DARVVPVTSRNR--DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D P + + D DIL+ KLR GQ++ + + KG G +HAK++P A
Sbjct: 185 DLIFEPQGRQEKYFHGDGVIQSANPDILLAKLRPGQKIDIEMHCIKGIGADHAKYSPVA 243
>gi|298708063|emb|CBJ30416.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 361
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 89/185 (48%), Gaps = 34/185 (18%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD---- 76
F + + S+AN+LRR+ +AE T+AI+ V + NS+++ DE +A R+GLIP+ ++
Sbjct: 60 FDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRLGLIPIMANPRMF 119
Query: 77 EVVDRILYSRD-----CTCVDFCSECSVEFTLDVKCVDDQT----RHVTTADLKSTDARV 127
E V +D TCV F L+VK D T + R
Sbjct: 120 EFVGEEGGEQDEPTEFNTCV---------FKLEVKNPADPADMPDPMPTGTSYAAGPRRT 170
Query: 128 VPVTSRNRD----ADMNEYGET--------DDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
+ V S + D E E DDILI KLR GQE+ + +KG GK+HAK
Sbjct: 171 MNVFSGAMEWCPHGDQVERFEGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAK 230
Query: 176 WNPTA 180
++P A
Sbjct: 231 FSPVA 235
>gi|254167082|ref|ZP_04873935.1| RNA polymerase Rpb3/Rpb11 dimerisation domain [Aciduliprofundum
boonei T469]
gi|197623938|gb|EDY36500.1| RNA polymerase Rpb3/Rpb11 dimerisation domain [Aciduliprofundum
boonei T469]
Length = 273
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 94/187 (50%), Gaps = 36/187 (19%)
Query: 10 HITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWV--------QLEAN----ST 57
HI ++ D +KF+++ SVAN+LRR I + P +AI V +E N ST
Sbjct: 4 HILEVQDRYIKFEIKGITPSVANALRRTLINDIPKLAIHKVIFHHGQIRDMEGNVYDSST 63
Query: 58 VLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCV--DFCSECSVEFTLDVKCVDDQTRHV 115
L DE IA R+GLIPL +D + + +C + C C+V +TL+ +H
Sbjct: 64 PLFDEIIAHRLGLIPLPTDL---NMKFRDECDHPPDEGCPLCTVTYTLN--------KH- 111
Query: 116 TTADLKSTDARVVPVTSRNRDADMNEYGETDDIL-IVKLRKGQELRLRAYAKKGFGKEHA 174
A + S D ++PV ++ D ++ IVKL++ Q + L A A G KEHA
Sbjct: 112 GPATVYSGD--LIPVGDE-------KFKPVDPLIPIVKLKEHQAILLEAEAIMGTAKEHA 162
Query: 175 KWNPTAG 181
KW T+G
Sbjct: 163 KWQVTSG 169
>gi|161899301|ref|XP_001712877.1| DNA-directed RNA polymerase I 40KDa subunit [Bigelowiella natans]
gi|75756371|gb|ABA27265.1| DNA-directed RNA polymerase I 40KDa subunit [Bigelowiella natans]
Length = 293
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 36/207 (17%)
Query: 3 YANQPS-----VHITD-------LTDENVKFQVEDTEL--SVANSLRRVFIAETPTMAID 48
Y N P+ +HI + L N ++E L S+ N++RR+ ++E T+AI+
Sbjct: 10 YKNYPNKKPWEIHIVEEGFQFKVLVLNNFFMEIEIVGLDSSIINAMRRILLSEIATIAIE 69
Query: 49 WVQLEANSTVLSDEFIASRIGLIPL--------------TSDEVVDRILYSRDCTCVDFC 94
+ + N+++L+D +A RIGLIPL D+ +L ++ +FC
Sbjct: 70 DIYVFENTSILNDNILAHRIGLIPLRINPKQIQFQKMYCLKDQTNSVVLILKNS---NFC 126
Query: 95 SECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLR 154
+ S T D+ C D R L +RV + + N + +DILI KL+
Sbjct: 127 N--SFRLTKDIFCKDFSYRRY--GSLIPHQSRVY-FSIKQDIVKKNSFLTFEDILITKLK 181
Query: 155 KGQELRLRAYAKKGFGKEHAKWNPTAG 181
Q L L A+ KKG+ +H+K++P A
Sbjct: 182 PKQLLFLEAHCKKGYSTQHSKYSPVAA 208
>gi|402224041|gb|EJU04104.1| RBP11-like subunit of RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 362
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 91/184 (49%), Gaps = 16/184 (8%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + LT + F + T+ ++AN+LRR+ I E T+A++ V + N++V+ DE +ASR+
Sbjct: 48 VDVKRLTPTTIDFDLVGTDAAIANALRRIMIGEVETIAVENVWVWQNTSVMQDEVLASRL 107
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVD---------DQTRHVTTAD 119
GL+PL + L S V ++ F + V C D + +
Sbjct: 108 GLVPLRINPAR---LESWTPNAVP-TDANTISFEVQVTCTSRPFPPRGSTDPSELYENSS 163
Query: 120 LKSTDARVVPVTSRNRDADM---NEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
+ ++ R PV ++ D DI++VKLR GQEL + + K G++HAK+
Sbjct: 164 IYASHLRWKPVGAQAALPDWLADPPSVAKPDIVLVKLRPGQELNIEMHCVKSCGRDHAKY 223
Query: 177 NPTA 180
+P A
Sbjct: 224 SPVA 227
>gi|387592898|gb|EIJ87922.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm3]
Length = 297
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 89/166 (53%), Gaps = 16/166 (9%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E + +++ + SV N++RR I++ PT+AI WV + N TV++DE ++ R+GLIP+ D
Sbjct: 44 EILSYRINHIDPSVLNAMRRTIISDVPTVAIHWVYIRENETVMADEILSHRLGLIPIIVD 103
Query: 77 EV-VDRILYSRDC-TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRN 134
+R++ + + + + S++ L + D+ V + D+K + S+
Sbjct: 104 AKDFERVVKTPELDPFTELTDKNSIQMELVITNNTDKILTVRSNDIK--------ILSKT 155
Query: 135 RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
A +++I +L G+++ R +A G G+EH+KW PT+
Sbjct: 156 NAAI------KQNVIITRLVPGKKIECRLFAIIGTGREHSKWMPTS 195
>gi|389848214|ref|YP_006350453.1| DNA-directed RNA polymerase subunit D [Haloferax mediterranei ATCC
33500]
gi|448618422|ref|ZP_21666659.1| DNA-directed RNA polymerase subunit D [Haloferax mediterranei ATCC
33500]
gi|388245520|gb|AFK20466.1| DNA-directed RNA polymerase subunit D [Haloferax mediterranei ATCC
33500]
gi|445746793|gb|ELZ98251.1| DNA-directed RNA polymerase subunit D [Haloferax mediterranei ATCC
33500]
Length = 260
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 31/172 (18%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
AN V + D +F V ++AN +RR +A+ PT +ID V+ N++V+ DE
Sbjct: 2 ANDFEVEFIEREDRRARFVVNGLTPALANGIRRAMVADVPTFSIDTVRFVENTSVMFDEM 61
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
I R+GL+PLT+ +F +V L+V D + D++S
Sbjct: 62 IGLRLGLVPLTT-------------PLDEFEPGDTVTVALEV----DGPATAYSGDIESA 104
Query: 124 DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
D VVP AD N I I++L++GQ L A A G+GK+HAK
Sbjct: 105 DEMVVP-------ADEN-------IPIIELKEGQRLEFEADAVLGYGKDHAK 142
>gi|440635104|gb|ELR05023.1| hypothetical protein GMDG_01594 [Geomyces destructans 20631-21]
Length = 375
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 15 TDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT 74
T N F + + SVAN+ RR+ +AE PT+AI++V + N++V+ DE +A R+GL+PL
Sbjct: 60 TQFNASFSISGIDASVANAFRRILLAEIPTLAIEYVFMNNNTSVIQDEVLAHRLGLVPLK 119
Query: 75 SDE--VVDRILYSRDCTCVDFCSEC------SVEFTLDVKCV---------DDQTRHVTT 117
+++ + + + ++ L + C D +
Sbjct: 120 GGRKGLLEFMRWFGKANEEEGTEAGEAFDYNTITLKLQIACTRNPDAAPGETDSNKLYIN 179
Query: 118 ADLKSTDARVVPVTSRNRDADMNEYGET-----DDILIVKLRKGQELRLRAYAKKGFGKE 172
+ + ++D PV R + +T DILI KLR GQ + L +A KG G +
Sbjct: 180 SAVHASDIVFEPV---GRQPEFFSGDDTITVTNPDILIAKLRPGQCIDLDMHAIKGIGAD 236
Query: 173 HAKWNPTA 180
HAK++P A
Sbjct: 237 HAKFSPVA 244
>gi|399218932|emb|CCF75819.1| unnamed protein product [Babesia microti strain RI]
Length = 318
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 85/160 (53%), Gaps = 11/160 (6%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD 80
+++ ++S N++RR+ IAE P++AI+ V + N+ ++ D+ +A R+ L+P D +
Sbjct: 50 IEIKGLDVSFVNAIRRILIAEVPSLAIETVMVWQNTGLIHDDVLAHRLALVPFNVDP--E 107
Query: 81 RILYSRDCTCVDFCSEC-SVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVT--SRNRDA 137
I Y + S C ++ D C+ ++ + V T+ LK +P+ R
Sbjct: 108 EINYRGHENLNESNSVCFELKVAHDANCI-EKYQSVYTSQLKW-----IPLGDEQHKRLG 161
Query: 138 DMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
+DIL+ KL GQ++ L+AY +KG G+ HAKW+
Sbjct: 162 KNQPRPLFEDILLTKLAPGQQIELKAYLEKGIGRTHAKWS 201
>gi|342185050|emb|CCC94532.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 258
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 72/153 (47%), Gaps = 9/153 (5%)
Query: 34 LRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF 93
RR+ I E P +A D V +E N V+ DE + RIGLIPL + + +D
Sbjct: 2 FRRLMITEVPVLAFDRVLIEENDGVVPDEVLCHRIGLIPLAGPVTWMKYITDSHSVTIDN 61
Query: 94 CSECSV-EFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNE----YGETDDI 148
V F LDV + V + S D + P+ S+ A +E + DI
Sbjct: 62 LDPAHVLVFELDV----EGQHGVQATSVYSGDLKWRPLRSQEEVAAKSEDNRVFLVHPDI 117
Query: 149 LIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
++ +L GQ L+LRA A KG G HAKW+P A
Sbjct: 118 VLTRLGPGQRLKLRAIAIKGIGVVHAKWSPVAA 150
>gi|154335916|ref|XP_001564194.1| putative DNA-directed RNA polymerase, alpha subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134061228|emb|CAM38250.1| putative DNA-directed RNA polymerase, alpha subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 446
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 82/193 (42%), Gaps = 32/193 (16%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E + F+++ ++N RRV + E PT+A D V +E N + + DE ++ R+GLIP+
Sbjct: 121 ERMSFELQHVSPPISNLFRRVLMTEVPTLAFDRVLIEENDSPVLDELLSHRLGLIPVAGP 180
Query: 77 EV-VDRILYSRDCTCVDFCSECSVEFTLDVKCVDD------------------QTRHVTT 117
+ + I S + + + F LD D Q +
Sbjct: 181 VMKMQYITESNQASFTNLDPSRILLFELDAMGAKDAAVTPVYSHQLQWVPLPGQEKKGGA 240
Query: 118 ADLKSTDARVVPVTSRNRDADMNEYGETD----------DILIVKLRKGQELRLRAYAKK 167
DAR R DA E+ D DIL+ KL GQ ++L+A A K
Sbjct: 241 KVGAGADAR---EAERGGDAGAAEFNTDDDDDAVFLVHPDILLTKLGPGQRIKLKAIAVK 297
Query: 168 GFGKEHAKWNPTA 180
GFG HAKW P +
Sbjct: 298 GFGAVHAKWCPVS 310
>gi|342874377|gb|EGU76391.1| hypothetical protein FOXB_13069 [Fusarium oxysporum Fo5176]
Length = 381
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 30/184 (16%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVV 79
F + + S+AN+ RR+ ++E PT+AI+ V +E N++V+ DE +A R+GLIP E +
Sbjct: 73 FSLVGIDASLANAFRRILLSEIPTLAIENVYIENNTSVIQDEVLAHRLGLIPFKGGREGL 132
Query: 80 DRIL--YSRDCTCVDFCSEC----SVEFTLDVKCV---------DDQTRHVTTADLKSTD 124
L + + D + C +V L+V C +D + A + + D
Sbjct: 133 HNFLKWHKKPEAGEDPYAGCFDWNTVRLELNVTCTVNEDASPAENDPLKAYHNAHVYARD 192
Query: 125 ARVVPVTSRNRDADMNEY--GE------TDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
VP EY GE DILI KLR Q + L + KG G +HAK+
Sbjct: 193 IVFVPT------GKQVEYFSGEDAIAPTNPDILIAKLRPRQTINLAMHMHKGIGSDHAKF 246
Query: 177 NPTA 180
+P A
Sbjct: 247 SPVA 250
>gi|389739703|gb|EIM80896.1| hypothetical protein STEHIDRAFT_105319 [Stereum hirsutum FP-91666
SS1]
Length = 369
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 18/185 (9%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + L++ +++F + + S+ANSLRR+ +AE PT+AI+ V + N++V+ DE A R+
Sbjct: 60 VKVQSLSNRSIEFDLVGVDASIANSLRRILLAEVPTIAIELVYVWNNTSVMVDEVFAHRL 119
Query: 69 GLIPLT-SDEVVDRILYSRDCTCVDFCSECSVEFTLDVKC---------VDDQTRHVTTA 118
G+IPL +++D + T +V F L+V C D T
Sbjct: 120 GMIPLNIPPQLMDMRTVNDQPT-----DRNTVVFKLNVVCERNPSAPKDSTDPFELYTNH 174
Query: 119 DLKSTDARVVPVTSRN---RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
++ S+ + P + A + +I++ KLR GQE+ + +A KG K+HAK
Sbjct: 175 EVLSSHLKWEPAGEQATVFEAASLVPAPTNGNIVLNKLRPGQEIDVEMHAVKGVAKDHAK 234
Query: 176 WNPTA 180
+ A
Sbjct: 235 FQAVA 239
>gi|448565309|ref|ZP_21636176.1| DNA-directed RNA polymerase subunit D [Haloferax prahovense DSM
18310]
gi|445715053|gb|ELZ66809.1| DNA-directed RNA polymerase subunit D [Haloferax prahovense DSM
18310]
Length = 259
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 31/171 (18%)
Query: 5 NQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFI 64
N V + D +F ++AN +RR +A+ PT +ID V+ N++V+ DE I
Sbjct: 3 NDFQVEFIEREDRRARFVARGLTPALANGIRRAMVADVPTFSIDTVRFVENTSVMFDEMI 62
Query: 65 ASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTD 124
R+GL+PLT+ DF +V L+V D + D++S D
Sbjct: 63 GLRLGLVPLTT-------------PLGDFEPGDTVTVALEV----DGPATAYSGDIESAD 105
Query: 125 ARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
VVP AD N I I++L++GQ L A A G+GK+HAK
Sbjct: 106 DMVVP-------ADEN-------IPIIELKEGQRLEFEADAVLGYGKDHAK 142
>gi|444726969|gb|ELW67479.1| DNA-directed RNA polymerase II subunit RPB3 [Tupaia chinensis]
Length = 77
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 44/51 (86%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQ 51
MP+ NQP+V IT+LTDE+VKF +E+ +L++ANS+ RVFIAE P +AIDWVQ
Sbjct: 2 MPFVNQPTVRITELTDESVKFIIENADLAMANSIWRVFIAEVPIVAIDWVQ 52
>gi|449299411|gb|EMC95425.1| hypothetical protein BAUCODRAFT_541052 [Baudoinia compniacensis
UAMH 10762]
Length = 388
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 91/201 (45%), Gaps = 41/201 (20%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD 80
F + + S+AN+ RR+ +AE PT+AI+ V + N++++ DE +A R+GLIPLT +
Sbjct: 68 FSLVGVDASIANAFRRILLAEIPTLAIEDVFIFNNTSIIQDEVLAHRLGLIPLTGGKKGL 127
Query: 81 RIL--YSRDCTCVDFCSEC------------------SVEFTLDVKC-----VDDQTRHV 115
L Y + DF ++ ++ TL V+C DD
Sbjct: 128 EWLRWYKKPPPKDDFAAQALHDDDDGEPGVSTPNDHNTIVVTLKVECRWATEQDDGRDGR 187
Query: 116 TTADLKSTDARVVPVTSR----------NRDADMNEYGE------TDDILIVKLRKGQEL 159
A TD V V S + + GE DILI KLR GQ++
Sbjct: 188 QLAQEGETDPEVRYVGSNVYAHQLVFEPQGEQTQHFSGENAIRPVNPDILIAKLRPGQKI 247
Query: 160 RLRAYAKKGFGKEHAKWNPTA 180
LR + KG G +HAK++P A
Sbjct: 248 DLRCHCYKGIGMDHAKFSPVA 268
>gi|313126017|ref|YP_004036287.1| DNA-directed RNA polymerase subunit d [Halogeometricum borinquense
DSM 11551]
gi|448285857|ref|ZP_21477096.1| DNA-directed RNA polymerase subunit D [Halogeometricum borinquense
DSM 11551]
gi|312292382|gb|ADQ66842.1| DNA-directed RNA polymerase, subunit D [Halogeometricum borinquense
DSM 11551]
gi|445575887|gb|ELY30350.1| DNA-directed RNA polymerase subunit D [Halogeometricum borinquense
DSM 11551]
Length = 260
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 78/169 (46%), Gaps = 31/169 (18%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + D +F V +VAN +RR IA+ PT +ID V+ NS+V+ DE I R+
Sbjct: 7 VEFIERDDRKARFLVRGMTPAVANGIRRAMIADVPTFSIDTVRFVENSSVMFDEMIGLRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+ DF +V LDV+ + D++++D V
Sbjct: 67 GLVPLTT-------------PLDDFEQGDTVTLALDVEG----PATAYSGDIETSDELVK 109
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P D++ I++L++GQ L L A A G GK HAK
Sbjct: 110 PA--------------EDNVPIIELKQGQRLELEADAVLGDGKSHAKHQ 144
>gi|260803742|ref|XP_002596748.1| hypothetical protein BRAFLDRAFT_58082 [Branchiostoma floridae]
gi|229282008|gb|EEN52760.1| hypothetical protein BRAFLDRAFT_58082 [Branchiostoma floridae]
Length = 290
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 53/162 (32%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
++F + + ++AN+ RR+ +AE PTMAI+ V + N++++ DE +A R+GLIP+ +D
Sbjct: 59 LEFDMVGIDAAIANAFRRILLAEVPTMAIEKVFVHNNTSIIQDEVLAHRLGLIPIHADP- 117
Query: 79 VDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDAD 138
R+ R D+K V D
Sbjct: 118 --RLFEYRQ--------------EGDIKPVHD---------------------------- 133
Query: 139 MNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
DILI KLR GQE+ L+ + KG G++HAK++P A
Sbjct: 134 --------DILIAKLRPGQEMDLKLHCVKGIGRDHAKFSPVA 167
>gi|154319504|ref|XP_001559069.1| hypothetical protein BC1G_02233 [Botryotinia fuckeliana B05.10]
gi|347842400|emb|CCD56972.1| similar to DNA-directed RNA polymerases I and III subunit RPAC1
[Botryotinia fuckeliana]
Length = 389
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 37/189 (19%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDE--V 78
F + + SVAN+ RR+ IAE PT+AI++ ++ N++V+ DE + +R+GL+P + +
Sbjct: 78 FSLIGIDASVANAFRRILIAEIPTLAIEYCFVKNNTSVIQDEVLCARLGLVPFKGGKEGL 137
Query: 79 VDRILY-----------SRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
+D + + R D +++ TL ++C ++ A TD R
Sbjct: 138 LDFMKWFQKPEEETPEEERHLGSFD---HNTIQLTLKIECTRNK-----EAAPGETDPRK 189
Query: 128 VPVTSR--NRDADMNEYGE--------------TDDILIVKLRKGQELRLRAYAKKGFGK 171
V + +D + +G DILI K+R GQ + + +A KG G+
Sbjct: 190 VYHNAHVYAKDIEFKPFGRQLEYFSGENTIKSPNPDILIAKMRPGQVIDIDMHAIKGIGR 249
Query: 172 EHAKWNPTA 180
+HAK++P A
Sbjct: 250 DHAKFSPVA 258
>gi|349915757|dbj|GAA27694.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Clonorchis
sinensis]
Length = 483
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 100/207 (48%), Gaps = 48/207 (23%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I D++D ++F + + S AN+LRR+ IAE P+++I+ V L N++V+ DE + R+
Sbjct: 39 VSIIDMSD-TLEFDMVHIDCSFANALRRILIAEVPSISIERVYLFQNTSVMPDEVLCHRL 97
Query: 69 GLIPLTSDEVVDR--ILYSR--------------DCTCVDF-----------CSECS-VE 100
GLIPL +V R I SR + DF CSE S E
Sbjct: 98 GLIPLA---IVPRHLIFPSRILPETDELTEFNPMEHVIFDFKVSFKKSDLKGCSESSGKE 154
Query: 101 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGE------TDDILIVKLR 154
F D+ ++ V +++LK VP+ + +GE + ILI KL
Sbjct: 155 FISDLNLPSVRSSAVYSSELKW-----VPLPGQE-----ELFGEDQPTVVSPHILINKLA 204
Query: 155 KGQELRLRAYAKKGFGKEHAKWNPTAG 181
G E+ R A KG G++HAK++P A
Sbjct: 205 VGDEIEARCVAVKGVGRDHAKFSPVAA 231
>gi|433418975|ref|ZP_20405134.1| DNA-directed RNA polymerase subunit D [Haloferax sp. BAB2207]
gi|448546358|ref|ZP_21626522.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-646]
gi|448548345|ref|ZP_21627612.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-645]
gi|448557539|ref|ZP_21632728.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-644]
gi|448568220|ref|ZP_21637797.1| DNA-directed RNA polymerase subunit D [Haloferax lucentense DSM
14919]
gi|448600839|ref|ZP_21656218.1| DNA-directed RNA polymerase subunit D [Haloferax alexandrinus JCM
10717]
gi|448602318|ref|ZP_21656374.1| DNA-directed RNA polymerase subunit D [Haloferax sulfurifontis ATCC
BAA-897]
gi|448622863|ref|ZP_21669512.1| DNA-directed RNA polymerase subunit D [Haloferax denitrificans ATCC
35960]
gi|432199583|gb|ELK55744.1| DNA-directed RNA polymerase subunit D [Haloferax sp. BAB2207]
gi|445702811|gb|ELZ54751.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-646]
gi|445714096|gb|ELZ65863.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-644]
gi|445714440|gb|ELZ66202.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-645]
gi|445727170|gb|ELZ78784.1| DNA-directed RNA polymerase subunit D [Haloferax lucentense DSM
14919]
gi|445734852|gb|ELZ86408.1| DNA-directed RNA polymerase subunit D [Haloferax alexandrinus JCM
10717]
gi|445747833|gb|ELZ99287.1| DNA-directed RNA polymerase subunit D [Haloferax sulfurifontis ATCC
BAA-897]
gi|445753371|gb|EMA04788.1| DNA-directed RNA polymerase subunit D [Haloferax denitrificans ATCC
35960]
Length = 259
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 31/171 (18%)
Query: 5 NQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFI 64
N V + D +F ++AN +RR +A+ PT +ID V+ N++V+ DE I
Sbjct: 3 NDFQVEFIEREDRRARFVARGLTPALANGIRRAMVADVPTFSIDTVRFVENTSVMFDEMI 62
Query: 65 ASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTD 124
R+GL+PLT+ DF +V L+V D + D++S D
Sbjct: 63 GLRLGLVPLTT-------------PLDDFEPGDTVTVALEV----DGPATAYSGDIESAD 105
Query: 125 ARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
VVP AD N I I++L++GQ L A A G+GK+HAK
Sbjct: 106 DMVVP-------ADEN-------IPIIELKEGQRLEFEADAVLGYGKDHAK 142
>gi|336121979|ref|YP_004576754.1| DNA-directed RNA polymerase [Methanothermococcus okinawensis IH1]
gi|334856500|gb|AEH06976.1| DNA-directed RNA polymerase [Methanothermococcus okinawensis IH1]
Length = 197
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 46/167 (27%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPL--- 73
E +KF ++ LS +++LRR+ I+ETPT AI+ V N++ + DE IA R+GLIP+
Sbjct: 14 ERLKFNLK-APLSFSSALRRIMISETPTYAIENVYFYENTSSMYDELIAHRLGLIPIKGK 72
Query: 74 --TSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVT 131
++DEV+ L ++ CV V + DL+S VV
Sbjct: 73 PVSNDEVIIFALI-KEGPCV-----------------------VYSGDLESETGEVV--- 105
Query: 132 SRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
I IVKL++GQ+L L A G GK HAKW P
Sbjct: 106 -------------FKHIPIVKLKEGQKLELECEALVGTGKTHAKWQP 139
>gi|346324382|gb|EGX93979.1| DNA-directed RNA polymerases I [Cordyceps militaris CM01]
Length = 380
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 28/186 (15%)
Query: 18 NVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDE 77
+ F + + S+AN+ RR+ IAE PT+AI+ V +E N++V+ DE +A R+GLIP
Sbjct: 70 HAAFSLIGLDASLANAFRRILIAEIPTLAIENVFIENNTSVIQDEVLAHRLGLIPFQGGR 129
Query: 78 V-VDRIL--YSRDCTCVDFCSEC----SVEFTLDVKCVD---------DQTRHVTTADLK 121
+ L Y + D + +V L+V C D T+ A +
Sbjct: 130 AGLQDFLKWYKKPADAEDDYAGGFDYNTVRLELNVTCTPNKDAAPGETDPTKAYHNAHVY 189
Query: 122 STDARVVPV-------TSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
+ D VP+ + + A +N DILI K+R Q + L + KG G +HA
Sbjct: 190 ARDIVFVPMGEQETYFSGADAIAPVNP-----DILIAKMRPKQTINLSMHMHKGIGADHA 244
Query: 175 KWNPTA 180
K++P A
Sbjct: 245 KFSPVA 250
>gi|258576271|ref|XP_002542317.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Uncinocarpus reesii 1704]
gi|237902583|gb|EEP76984.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Uncinocarpus reesii 1704]
Length = 378
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 21/180 (11%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + ++AN+ RR+ IAE P++AI++V + N++V+ DE ++ R+GL+PL S + +
Sbjct: 62 FSLIGVDAAIANAFRRILIAEIPSLAIEFVFIHNNTSVIHDEVLSHRLGLVPLKGSLDGI 121
Query: 80 DRILYSR-------DCTCVDFCSECSVEFTLDVKCV---------DDQTRHVTTADLKST 123
+ + + R D V ++ L+ +C +D T A + +
Sbjct: 122 NWMTWFRMPQEGEEDSASVA-SDHNTIVLKLNAECTKNPNASPDEEDPTVLYNNAHVYAR 180
Query: 124 DARVVPV---TSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D PV T+ D DIL+ KLR GQ++ + + KG G++HAK++P A
Sbjct: 181 DIVFEPVGRQTTFFSGPDGEIQPSNPDILLAKLRPGQKIDIEMHCIKGIGQDHAKFSPVA 240
>gi|408404989|ref|YP_006862972.1| DNA-directed RNA polymerase subunit D, partial [Candidatus
Nitrososphaera gargensis Ga9.2]
gi|408365585|gb|AFU59315.1| DNA-directed RNA polymerase subunit D [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 163
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 65/125 (52%), Gaps = 19/125 (15%)
Query: 59 LSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFTLDVKCVDDQTRHVT 116
+ DE +A R+GLIPL +D R + +C C CS+C V LD + ++T VT
Sbjct: 1 MHDEAVAHRLGLIPLRTDP--GRFVMPHECDCKSTLGCSKCRVLLVLDAE-ASEKTLVVT 57
Query: 117 TADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
+ +L S D V PV+ DI I+ L Q+L+ AYA+ G GK+HAKW
Sbjct: 58 SGELVSEDEMVKPVSK--------------DIPIIVLAPNQKLKFEAYARLGTGKDHAKW 103
Query: 177 NPTAG 181
PT+
Sbjct: 104 QPTSA 108
>gi|429192481|ref|YP_007178159.1| DNA-directed RNA polymerase subunit alpha [Natronobacterium
gregoryi SP2]
gi|448325893|ref|ZP_21515271.1| DNA-directed RNA polymerase subunit D [Natronobacterium gregoryi
SP2]
gi|429136699|gb|AFZ73710.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Natronobacterium gregoryi SP2]
gi|445613985|gb|ELY67670.1| DNA-directed RNA polymerase subunit D [Natronobacterium gregoryi
SP2]
Length = 249
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 30/169 (17%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + D N +F V + + AN +RR +A+ PTMAID V+ NS+V+ DE +A R+
Sbjct: 7 VEFVERDDRNARFLVRNVTPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+ +F + +V ++DV+ + DL S+D V
Sbjct: 67 GLVPLTT------------PPEGEFGEDDTVTLSIDVEG----PATAYSGDLVSSDDLVQ 110
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD N + I++L+ GQ L A A GKEHAK
Sbjct: 111 P-------ADEN-------VPIIELKDGQRLEAEAEATLDRGKEHAKHQ 145
>gi|261403745|ref|YP_003247969.1| RNA polymerase insert [Methanocaldococcus vulcanius M7]
gi|261370738|gb|ACX73487.1| RNA polymerase insert [Methanocaldococcus vulcanius M7]
Length = 191
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 35/151 (23%)
Query: 28 LSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRD 87
+S +N++RR+ I+E PT AI+ V + NS+ + DE +A R+GLIP+ ++D +
Sbjct: 24 ISFSNAIRRIMISEVPTFAIEDVYIYENSSSMDDEILAHRLGLIPIKGKPLLDTEI---- 79
Query: 88 CTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDD 147
+ FTL+ + V ++DLKS + V +
Sbjct: 80 -----------ITFTLE----KEGPCTVYSSDLKSENGEVA----------------FKN 108
Query: 148 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
I IVKL KGQ +++ A G GK HAKW P
Sbjct: 109 IPIVKLGKGQRIKIECEAVPGIGKVHAKWQP 139
>gi|402080745|gb|EJT75890.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 373
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 18 NVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPL-TSD 76
+ F + + S+AN+ RR+ I+E P++AI+ V + N++V+ DE +A R+GL+PL S
Sbjct: 64 HASFSLVGVDASIANAFRRIMISEIPSLAIERVFISNNTSVIQDEVLAQRLGLVPLRGSR 123
Query: 77 EVVDRIL-YSRDCTCVDFCSEC---SVEFTLDVKCVDDQTRHVTTAD------LKSTDAR 126
E + R + R F + +V L V+C ++ D + AR
Sbjct: 124 EGLRRFMRVYRKSEAGAFDNSFDFNTVNLRLSVQCSRNEAAAAGETDPAKLYHHANVYAR 183
Query: 127 VVPVTSRNRDADM----NEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+ + AD G + DIL+ KLR GQ + L +A G+G +HAK++P
Sbjct: 184 DIEFLPEGQQADWFSGDGVIGPVNPDILLAKLRPGQAIELEMHAHVGYGWDHAKFSP 240
>gi|407929549|gb|EKG22366.1| DNA-directed RNA polymerase 30-40kDa subunit conserved site
[Macrophomina phaseolina MS6]
Length = 377
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 23/183 (12%)
Query: 20 KFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEV 78
+F + + ++AN+ RR+ IAE PT+AI+ V + N++++ DE +A R+G+IPL S +
Sbjct: 66 QFSLIGVDAAIANAFRRILIAELPTLAIEDVYILKNTSIIQDEVLAHRLGMIPLKGSPKA 125
Query: 79 VDRILYSRDCTCVDFCSECSVEFT-----LDVKC-------------VDDQTRHVTTADL 120
+ + + + + ++ L+V+C D + + +
Sbjct: 126 IQNMTWYKKPESGEAEQGAHTDYNTIVLELNVQCEWHPDGREMAKKGETDPKKLFINSSV 185
Query: 121 KSTDARVVPVTSRNRDADMNEYG---ETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
+ + +P T R + E DILI KLR GQ + L + KG G +HAK++
Sbjct: 186 YAHQIKFIP-TGRQAELFAGENAIQPVNPDILIAKLRPGQSINLSMHCIKGIGSDHAKFS 244
Query: 178 PTA 180
P A
Sbjct: 245 PVA 247
>gi|374635695|ref|ZP_09707289.1| DNA-directed RNA polymerase [Methanotorris formicicus Mc-S-70]
gi|373561548|gb|EHP87781.1| DNA-directed RNA polymerase [Methanotorris formicicus Mc-S-70]
Length = 194
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 35/151 (23%)
Query: 28 LSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRD 87
+S +N++RR+ I+E PT AI+ V + N++ + DE +A R+GLIP+ V S D
Sbjct: 24 ISFSNAIRRIMISEVPTYAIENVYVHENTSSMHDEILAHRLGLIPIKGKPV------SED 77
Query: 88 CTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDD 147
+ FTL + + V ++DLKS + VV +
Sbjct: 78 EV---------ITFTL----IKEGPCTVYSSDLKSENGEVV----------------FKN 108
Query: 148 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
I I+KLR+GQ + L A G GK HAKW P
Sbjct: 109 IPIIKLREGQRIELVCEATVGIGKIHAKWQP 139
>gi|289191580|ref|YP_003457521.1| RNA polymerase insert [Methanocaldococcus sp. FS406-22]
gi|288938030|gb|ADC68785.1| RNA polymerase insert [Methanocaldococcus sp. FS406-22]
Length = 191
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 35/151 (23%)
Query: 28 LSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRD 87
+S +N++RR+ I+E PT AI+ V + NS+ + DE +A R+GLIP+ +++
Sbjct: 24 ISFSNAIRRIMISEVPTYAIEDVYIYENSSSMDDEILAHRLGLIPIKGKPLIE------- 76
Query: 88 CTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDD 147
SE + FTL+ + V ++DLKS + V +
Sbjct: 77 -------SEV-ITFTLE----KEGPCTVYSSDLKSENGEVA----------------FKN 108
Query: 148 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
I IVKL +GQ++++ A G GK HAKW P
Sbjct: 109 IPIVKLGRGQKIKIECEAVPGIGKTHAKWQP 139
>gi|170087654|ref|XP_001875050.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650250|gb|EDR14491.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 353
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 93/182 (51%), Gaps = 13/182 (7%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + L++ ++ F + + S+AN+ RR+ IAE PT+ I+ V + N++V+ DE ++ R+
Sbjct: 46 VKVQRLSNLSIDFDLVGVDASIANAFRRIMIAEVPTVCIENVYVWDNTSVVVDEVLSQRL 105
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQ--TRHVTTADLKSTDAR 126
GLIPL D ++ ++ + ++ F + + C + + T D +
Sbjct: 106 GLIPLNIDP---DLIVMKETSADQATDRNTIVFEIKLTCERNPKAKKDSTDPDESYINHE 162
Query: 127 VV-------PVTSRNRDADMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
V+ P + N T+ +I++ KLR GQ++ + +A KG GK+HAK+ P
Sbjct: 163 VLSSHLVWKPAGEQEEVFAGNPPAPTNPNIVLAKLRPGQDVHVELHAMKGVGKDHAKYCP 222
Query: 179 TA 180
A
Sbjct: 223 VA 224
>gi|156061627|ref|XP_001596736.1| hypothetical protein SS1G_02959 [Sclerotinia sclerotiorum 1980]
gi|154700360|gb|EDO00099.1| hypothetical protein SS1G_02959 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 387
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 37/189 (19%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDE--V 78
F + + SVAN+ RR+ IAE PT+AI++ ++ N++V+ DE + R+GL+P + +
Sbjct: 76 FSLVGIDASVANAFRRILIAEIPTLAIEYCFVKNNTSVIQDEVLCGRLGLVPFKGGKEGL 135
Query: 79 VDRILY-----------SRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST--DA 125
+D + + R D +++ +L ++C ++ AD + +A
Sbjct: 136 LDFMKWFQKPEEETPEEERHLGSFD---HNTIQLSLKIECTRNKEAAPGEADPRKIYHNA 192
Query: 126 RVVPVTSRNRDADMNEYGE--------------TDDILIVKLRKGQELRLRAYAKKGFGK 171
V +D + +G DILI K+R GQ + + +A KG G+
Sbjct: 193 HVYA-----KDIEFKPFGRQLEYFSGENAIRSPNPDILIAKMRPGQVIDIDMHAIKGIGR 247
Query: 172 EHAKWNPTA 180
+HAK++P A
Sbjct: 248 DHAKFSPVA 256
>gi|20094910|ref|NP_614757.1| DNA-directed RNA polymerase alpha subunit [Methanopyrus kandleri
AV19]
gi|23822100|sp|Q8TVB8.1|RPOD_METKA RecName: Full=DNA-directed RNA polymerase subunit D
gi|19888146|gb|AAM02687.1| DNA-directed RNA polymerase alpha subunit [Methanopyrus kandleri
AV19]
Length = 275
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 73/166 (43%), Gaps = 20/166 (12%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E F +E+T N++RR PT+ I+ V + N T + DE +A R+GLIPL D
Sbjct: 17 ERATFIIEETSAEFVNTIRRALYTLVPTLRIEEVIIYENDTPMYDEMLAHRLGLIPLRVD 76
Query: 77 EVVDRILYSRDCTC-VDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNR 135
+ +D+ C C C +C V L+V + V DLK V P
Sbjct: 77 D-IDQFELPDLCDCGGKGCEKCQVRAELEV----EGPTKVYARDLKFDHPDVEPAFP--- 128
Query: 136 DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
D LI ++ + Q +RL A G G EHAKW P +
Sbjct: 129 -----------DTLITEVGEDQRIRLEVIAVPGLGLEHAKWKPVSA 163
>gi|398014106|ref|XP_003860244.1| DNA-directed RNA polymerase, alpha subunit, putative [Leishmania
donovani]
gi|322498464|emb|CBZ33537.1| DNA-directed RNA polymerase, alpha subunit, putative [Leishmania
donovani]
Length = 442
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 25/189 (13%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E + F++++ ++N RRV E PT+A D V +E N + + DE ++ R+GL+P+
Sbjct: 118 ERMSFEMQNVSPPISNLFRRVLTTEVPTLAFDRVLIEENDSPVLDELLSHRLGLVPVAGP 177
Query: 77 EV-VDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQ------TRHVTTADLKSTDARVVP 129
+ + I S + + + F LD D +R + L D +
Sbjct: 178 VMKMHYITESNQASFSNLDPSRVLLFELDATGAKDAAVTPVYSRQLQWVPLPGQDKKTGA 237
Query: 130 VTSR---NRDADMNEYGETD---------------DILIVKLRKGQELRLRAYAKKGFGK 171
V R+ G T+ DIL+ KL GQ ++L+A A KG G
Sbjct: 238 VAGACQTGREEYAGAAGATEHSADDDDDAVFLVHPDILLSKLGPGQRIKLKAIAVKGLGA 297
Query: 172 EHAKWNPTA 180
HAKW+P +
Sbjct: 298 VHAKWSPVS 306
>gi|146084517|ref|XP_001465028.1| putative DNA-directed RNA polymerase, alpha subunit [Leishmania
infantum JPCM5]
gi|134069124|emb|CAM67271.1| putative DNA-directed RNA polymerase, alpha subunit [Leishmania
infantum JPCM5]
Length = 442
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 25/189 (13%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E + F++++ ++N RRV E PT+A D V +E N + + DE ++ R+GL+P+
Sbjct: 118 ERMSFEMQNVSPPISNLFRRVLTTEVPTLAFDRVLIEENDSPVLDELLSHRLGLVPVAGP 177
Query: 77 EV-VDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQ------TRHVTTADLKSTDARVVP 129
+ + I S + + + F LD D +R + L D +
Sbjct: 178 VMKMHYITESNQASFSNLDPSRVLLFELDATGAKDAAVTPVYSRQLQWVPLPGQDKKTGA 237
Query: 130 VTSR---NRDADMNEYGETD---------------DILIVKLRKGQELRLRAYAKKGFGK 171
V R+ G T+ DIL+ KL GQ ++L+A A KG G
Sbjct: 238 VAGACQTGREEYAGAAGATEHSADDDDDAVFLVHPDILLSKLGPGQRIKLKAIAVKGLGA 297
Query: 172 EHAKWNPTA 180
HAKW+P +
Sbjct: 298 VHAKWSPVS 306
>gi|339238573|ref|XP_003380841.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Trichinella
spiralis]
gi|316976212|gb|EFV59540.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Trichinella
spiralis]
Length = 277
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 90/182 (49%), Gaps = 15/182 (8%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
YA V + ++ D ++ + + N++RR+ +AE PTMAI+ V + N+ V++DE
Sbjct: 31 YAKHMKVKVMNIIDMEMQLDFVNVDAPFVNAIRRILLAEVPTMAIEKVHMFQNTGVIADE 90
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRH----VTTA 118
A R+GL+P+ +D + Y D + +E ++ F L VK D+ + +
Sbjct: 91 VFAHRLGLLPIKADP--RQFQYRTD---DEPKAEDTLIFELKVKSNVDEIENERVCSSAL 145
Query: 119 DLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+ K D + + + DIL+ L+ GQE+ + KG G++HAK++P
Sbjct: 146 EWKPIDGQ------EEKFKNCPPKVVHPDILLAILKSGQEIECVCHCTKGIGRDHAKFSP 199
Query: 179 TA 180
A
Sbjct: 200 VA 201
>gi|257076683|ref|ZP_05571044.1| DNA-directed RNA polymerase subunit D [Ferroplasma acidarmanus
fer1]
Length = 269
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 95/187 (50%), Gaps = 35/187 (18%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWV------------QLEANS 56
+ I +L D ++F ++ ++ANS+RR I + P +AI+ V + +S
Sbjct: 1 MKILELKDNFIRFSIDGITPAIANSIRRTLINDIPKLAIENVIYHHGEIRDADGNVYDSS 60
Query: 57 TVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD-FCSECSVEFTLDVKCVDDQTRHV 115
L DE +ASRIGLIPL +D ++ + +C+C C C+V ++++ +
Sbjct: 61 LPLFDEILASRIGLIPLKTDLSMN---FRDECSCGGKGCDLCTVTYSIN---------KL 108
Query: 116 TTADLKSTDARVVPVTSRNRDADMNEYGETDDIL-IVKLRKGQELRLRAYAKKGFGKEHA 174
+ S+D ++PV + E TD ++ IV+L+K Q + + A G GKEHA
Sbjct: 109 GPGMVYSSD--IMPVNNP-------ELTVTDPLIPIVELKKNQAMLVTCEAILGRGKEHA 159
Query: 175 KWNPTAG 181
KW T+G
Sbjct: 160 KWQATSG 166
>gi|448583259|ref|ZP_21646615.1| DNA-directed RNA polymerase subunit D [Haloferax gibbonsii ATCC
33959]
gi|445729488|gb|ELZ81083.1| DNA-directed RNA polymerase subunit D [Haloferax gibbonsii ATCC
33959]
Length = 259
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 31/171 (18%)
Query: 5 NQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFI 64
N V + D +F ++AN +RR +A+ PT +I+ V+ N++V+ DE I
Sbjct: 3 NDFQVEFIEREDRRARFVARGLTPALANGIRRAMVADVPTFSIETVRFVENTSVMFDEMI 62
Query: 65 ASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTD 124
R+GL+PLT+ DF +V L+V D + D++S D
Sbjct: 63 GLRLGLVPLTT-------------PLDDFEPGDTVTVALEV----DGPATAYSGDIESAD 105
Query: 125 ARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
VVP AD N I I++L++GQ L A A G+GK+HAK
Sbjct: 106 DMVVP-------ADEN-------IPIIELKEGQRLEFEADAVLGYGKDHAK 142
>gi|296090458|emb|CBI40277.3| unnamed protein product [Vitis vinifera]
Length = 206
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 50/73 (68%), Gaps = 6/73 (8%)
Query: 110 DQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD--DILIVKLRKGQELRLRAYAKK 167
D+T VT+ DL S+D VVPV +D + Y D I+IVKLR+GQELRLRA A+K
Sbjct: 3 DETLDVTSKDLISSDHTVVPVDF----SDSSGYDSADKKGIIIVKLRRGQELRLRAIARK 58
Query: 168 GFGKEHAKWNPTA 180
G GK+HAKW+P A
Sbjct: 59 GIGKDHAKWSPAA 71
>gi|256071190|ref|XP_002571924.1| DNA-directed RNA polymerase I [Schistosoma mansoni]
gi|353231403|emb|CCD77821.1| putative dna-directed RNA polymerase I [Schistosoma mansoni]
Length = 490
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 88/187 (47%), Gaps = 25/187 (13%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
+ ++F + + + S AN++RR+ ++E P++AI+ V + N++++ DE + R+GLIPL D
Sbjct: 48 DTMEFDMINLDCSFANAVRRILVSEVPSLAIERVYVSQNTSIMPDEVMCHRLGLIPLAVD 107
Query: 77 --------------------EVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVT 116
+ + ++Y CV F K DD
Sbjct: 108 PKYFLFPTRKPPASDDLSGFDPKEHLVYD---LCVGFTHSSKDSHNKPEKDKDDTLPVAQ 164
Query: 117 TADLKSTDARVVPVTSRNRDADMNE--YGETDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
+ S+D + +P+ + ++N + ILI KL G E+ R A KG G++HA
Sbjct: 165 YLPVYSSDLKWIPLAGQEDHFNINNPPIPVSSTILINKLALGDEIEARCVAVKGIGRDHA 224
Query: 175 KWNPTAG 181
K++P A
Sbjct: 225 KFSPVAA 231
>gi|322369534|ref|ZP_08044099.1| DNA-directed RNA polymerase subunit D [Haladaptatus paucihalophilus
DX253]
gi|320551266|gb|EFW92915.1| DNA-directed RNA polymerase subunit D [Haladaptatus paucihalophilus
DX253]
Length = 248
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 31/169 (18%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V D + +F V + + AN +RR IA+ PT++ID +++ NS+V+ DE I R+
Sbjct: 7 VEFIDRGERKARFLVRNVTPAFANGIRRAMIADVPTLSIDTLRVIENSSVMFDEQIGLRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+ +F +V +LDV + DL S+D V
Sbjct: 67 GLVPLTT-------------PPGEFEEGDTVTLSLDVSG----PGTAFSGDLISSDEMVQ 109
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD D+I I+ L++GQ L L A A G GK+HAK
Sbjct: 110 P-------AD-------DNIPIIDLKEGQRLELEADAVLGSGKDHAKHQ 144
>gi|292656898|ref|YP_003536795.1| DNA-directed RNA polymerase subunit D [Haloferax volcanii DS2]
gi|448290898|ref|ZP_21482043.1| DNA-directed RNA polymerase subunit D [Haloferax volcanii DS2]
gi|291371468|gb|ADE03695.1| DNA-directed RNA polymerase subunit D [Haloferax volcanii DS2]
gi|445577951|gb|ELY32371.1| DNA-directed RNA polymerase subunit D [Haloferax volcanii DS2]
Length = 259
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 31/171 (18%)
Query: 5 NQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFI 64
N V + D +F ++AN +RR +A+ PT +ID V+ N++V+ DE I
Sbjct: 3 NDFQVEFIEREDRRARFVARGLTPALANGIRRAMVADVPTFSIDTVRFVENTSVMFDEMI 62
Query: 65 ASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTD 124
R+GL+PLT+ DF +V L+V D + D++S D
Sbjct: 63 GLRLGLVPLTT-------------PLDDFEPGDTVTVALEV----DGPATAYSGDIESAD 105
Query: 125 ARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
VVP AD N I I++L++GQ L A A G GK+HAK
Sbjct: 106 DMVVP-------ADEN-------IPIIELKEGQRLEFEADAVLGHGKDHAK 142
>gi|322693281|gb|EFY85147.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Metarhizium acridum CQMa 102]
Length = 1842
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 26/182 (14%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTS--DEV 78
F + + S+AN+ RR+ IAE PT+AI+ V +E N++V+ DE +A R+GLIP D +
Sbjct: 1534 FSLMGLDASLANAFRRILIAEIPTLAIENVYIENNTSVIQDEVLAHRLGLIPFNGGRDGL 1593
Query: 79 VDRILYSRD--------CTCVDFCSECSVEFTLDVKCV---------DDQTRHVTTADLK 121
+ + + + C D+ +V L+V C D + A +
Sbjct: 1594 KNFLKWHKKPEAGEDPYAGCFDW---NTVRLELNVTCTVNPDAAPDERDPLKAFNNAHVY 1650
Query: 122 STDARVVPVTSRNRDADMNEYG---ETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+ D VP T R + E DILI KLR Q + L + KG G +HAK++P
Sbjct: 1651 AKDIVFVP-TGRQVEFFSGEDAIAPVNPDILIAKLRPRQTINLSMHMHKGIGADHAKFSP 1709
Query: 179 TA 180
A
Sbjct: 1710 VA 1711
>gi|435847148|ref|YP_007309398.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Natronococcus occultus SP4]
gi|433673416|gb|AGB37608.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Natronococcus occultus SP4]
Length = 249
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 30/169 (17%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + D +F V AN +RR +A+ PTMAID V+ NS+V+ DE +A R+
Sbjct: 7 VEFVERGDREARFLVRGISPGFANGIRRAMVADVPTMAIDTVRFIENSSVMFDEQLALRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+ +F + +V ++DV+ + DL S+D+ V
Sbjct: 67 GLVPLTT------------PPEGEFVEDDTVTLSIDVEG----PATAYSGDLVSSDSLVE 110
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD N + I++L++GQ L A A+ GK+HAK
Sbjct: 111 P-------ADEN-------VPIIELKEGQRLEAEADARLERGKDHAKHQ 145
>gi|401419509|ref|XP_003874244.1| DNA-directed RNA polymerase, alpha subunit,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322490479|emb|CBZ25739.1| DNA-directed RNA polymerase, alpha subunit,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 434
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 17/181 (9%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
E + F++++ ++N RRV E PT+A D V +E N + + DE ++ R+GL+P+
Sbjct: 118 ERMSFEMQNVSPPISNLFRRVLTTEVPTLAFDRVLIEENDSPVLDELLSHRLGLVPVAGP 177
Query: 77 EV-VDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQ------TRHVTTADLKSTDARVVP 129
+ + I S + + + F LD D +R + L D +
Sbjct: 178 VMKMHYITESNQASFNNLDPSRVLLFELDATGAKDAAVTPVYSRQLQWVPLPGQDKKTGA 237
Query: 130 VTSRNRDADMNEYGET----------DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
V + G DIL+ KL GQ ++L+A A KG G HAKW+P
Sbjct: 238 VAGVCQAGSEECAGADDDDDAVFLVHPDILLTKLGPGQRIKLKAIAVKGLGAVHAKWSPV 297
Query: 180 A 180
+
Sbjct: 298 S 298
>gi|320591803|gb|EFX04242.1| DNA-directed RNA polymerase 1 and 3 subunit [Grosmannia clavigera
kw1407]
Length = 376
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 30/183 (16%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTS--DEV 78
F + + S+AN+ RR+ I+E PT+AI+ ++ N++V+ DE +A R+GLIP T D +
Sbjct: 67 FSLIGVDASIANAFRRIMISEIPTVAIETAYIDNNTSVIQDEVLAHRLGLIPFTGGYDGL 126
Query: 79 VDRILYSR----DCTCVDFCSEC---SVEFTLDVKCV---------DDQTRHVTTADLKS 122
+ I + + D +F +++ L V+C D + A + +
Sbjct: 127 RNFIKWWKRPGPDADPNEFPPSFDYNTIKLKLQVECTRNRSAAPGETDPLKLYHNAHVYA 186
Query: 123 TDARVVP-------VTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
D VP + N +N DIL+ KLR GQ + + + KG G +HAK
Sbjct: 187 RDIEFVPEGNQPSVFSGENAIRPVNP-----DILVAKLRPGQAIDIEMHMHKGIGSDHAK 241
Query: 176 WNP 178
++P
Sbjct: 242 FSP 244
>gi|15668364|ref|NP_247160.1| DNA-directed RNA polymerase subunit D [Methanocaldococcus
jannaschii DSM 2661]
gi|2500626|sp|Q57648.1|RPOD_METJA RecName: Full=DNA-directed RNA polymerase subunit D
gi|1590937|gb|AAB98172.1| DNA-directed RNA polymerase, subunit D (rpoD) [Methanocaldococcus
jannaschii DSM 2661]
Length = 191
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 35/151 (23%)
Query: 28 LSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRD 87
+S +N++RR+ I+E PT AI+ V + NS+ + DE +A R+GLIP+ +++ +
Sbjct: 24 ISFSNAIRRIMISEVPTFAIEDVYIYENSSSMDDEILAHRLGLIPIKGKPLLENEV---- 79
Query: 88 CTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDD 147
+ FTL+ + V ++DLKS + V +
Sbjct: 80 -----------ITFTLE----KEGPCTVYSSDLKSENGEVA----------------FKN 108
Query: 148 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
I IVKL KGQ +++ A G GK HAKW P
Sbjct: 109 IPIVKLGKGQRIQIECEAIPGIGKVHAKWQP 139
>gi|448298705|ref|ZP_21488732.1| DNA-directed RNA polymerase subunit D [Natronorubrum tibetense
GA33]
gi|445591007|gb|ELY45218.1| DNA-directed RNA polymerase subunit D [Natronorubrum tibetense
GA33]
Length = 249
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 30/169 (17%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + D + +F V D + AN +RR +A+ PTMAID V+ NS+V+ DE +A R+
Sbjct: 7 VEFVEREDRDARFLVRDVTPAFANGIRRAMVADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+ +F + +V ++DV+ + DL S+D V
Sbjct: 67 GLVPLTT------------PPEGEFVEDDTVTLSIDVEG----PATAYSGDLVSSDDLVQ 110
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD D++ I++L+ GQ L A A GK HAK
Sbjct: 111 P-------AD-------DNVPIIELKDGQRLEAEADAVLERGKNHAKHQ 145
>gi|257388632|ref|YP_003178405.1| RNA polymerase insert [Halomicrobium mukohataei DSM 12286]
gi|257170939|gb|ACV48698.1| RNA polymerase insert [Halomicrobium mukohataei DSM 12286]
Length = 259
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 82/169 (48%), Gaps = 31/169 (18%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + +D +F V + AN +RR IA+ PT ++D V++ NS+V+ DE I R+
Sbjct: 7 VEFVERSDREARFLVRGISPAFANGIRRAMIADVPTFSVDTVRVIENSSVMFDEQIGLRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+D DF E E TL + +T + + DL S+D+ V
Sbjct: 67 GLVPLTTD-------------LDDF--EVGDEVTLSIDVSGPETAY--SGDLVSSDSLVG 109
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD D+I I+ L+ GQ L + A A G+EHAK
Sbjct: 110 P-------AD-------DNIPIIDLKDGQRLEVEADAVLDRGREHAKHQ 144
>gi|324559772|gb|ADY49840.1| DNA-directed RNA polymerase II subunit RPB3, partial [Ascaris suum]
Length = 69
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 45 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCT--CVDFCSECSVEFT 102
MAIDWVQ+EAN++VL DEFIA R+GLIPLTS+ VVD+ YSR + C V F
Sbjct: 1 MAIDWVQIEANTSVLHDEFIAHRMGLIPLTSNNVVDKFQYSRGFGKEHAKWNPTCGVAFE 60
Query: 103 LDVKCVDDQTRH 114
D D+ RH
Sbjct: 61 YD---PDNALRH 69
Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 167 KGFGKEHAKWNPTAG 181
+GFGKEHAKWNPT G
Sbjct: 42 RGFGKEHAKWNPTCG 56
>gi|76802059|ref|YP_327067.1| DNA-directed RNA polymerase subunit D [Natronomonas pharaonis DSM
2160]
gi|121723150|sp|Q3IQT6.1|RPOD_NATPD RecName: Full=DNA-directed RNA polymerase subunit D
gi|76557924|emb|CAI49508.1| DNA-directed RNA polymerase subunit D [Natronomonas pharaonis DSM
2160]
Length = 247
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 32/169 (18%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V D + + +F V + AN LRR IA+ PT++ID +++ NS+V+ DE +A R+
Sbjct: 7 VTFIDRDERSARFLVRGVTPAFANGLRRAMIADVPTLSIDTLRVVENSSVMFDEQLALRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT T D+ +V +DV+ + DL S+D +V
Sbjct: 67 GLVPLT--------------TPDDYEPGETVTLAIDVEG----PATAYSGDLVSSDDKVQ 108
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD N I I++L+ Q+L L A A G GK+HAK
Sbjct: 109 P-------ADEN-------IPIIELKDDQQLELEADATLGRGKDHAKHQ 143
>gi|433590977|ref|YP_007280473.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Natrinema
pellirubrum DSM 15624]
gi|448334510|ref|ZP_21523685.1| DNA-directed RNA polymerase subunit D [Natrinema pellirubrum DSM
15624]
gi|448385452|ref|ZP_21563958.1| DNA-directed RNA polymerase subunit D [Haloterrigena thermotolerans
DSM 11522]
gi|433305757|gb|AGB31569.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Natrinema
pellirubrum DSM 15624]
gi|445619842|gb|ELY73359.1| DNA-directed RNA polymerase subunit D [Natrinema pellirubrum DSM
15624]
gi|445656947|gb|ELZ09779.1| DNA-directed RNA polymerase subunit D [Haloterrigena thermotolerans
DSM 11522]
Length = 249
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 78/169 (46%), Gaps = 30/169 (17%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + D +F V AN +RR IA+ PTMAID V+ NS+V+ DE +A R+
Sbjct: 7 VEFVEREDREARFLVRGVTPGFANGIRRAMIADVPTMAIDTVRFVENSSVMFDEQLALRM 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+ V +F + +V ++DV+ D + DL S D V
Sbjct: 67 GLVPLTTPPV------------GEFAEDDTVTLSIDVEGPD----TAYSGDLVSEDDLVQ 110
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD N + I+ L+ GQ L A A GK+HAK
Sbjct: 111 P-------ADEN-------VPIIDLKDGQRLEAEADAVIDRGKDHAKHQ 145
>gi|256810443|ref|YP_003127812.1| RNA polymerase insert [Methanocaldococcus fervens AG86]
gi|256793643|gb|ACV24312.1| RNA polymerase insert [Methanocaldococcus fervens AG86]
Length = 191
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 35/151 (23%)
Query: 28 LSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRD 87
+S +N++RR+ I+E PT AI+ V + NS+ + DE IA R+GLIP+ +++ +
Sbjct: 24 ISFSNAIRRIMISEVPTYAIEDVYIFENSSSMDDEIIAHRLGLIPIKGKPLLENEI---- 79
Query: 88 CTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDD 147
+ FTL+ + V ++DLKS + V +
Sbjct: 80 -----------ITFTLE----KEGPCTVYSSDLKSENGEVA----------------FKN 108
Query: 148 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
I IVKL GQ++++ A G GK HAKW P
Sbjct: 109 IPIVKLGNGQKIQIECEAVPGIGKVHAKWQP 139
>gi|300708874|ref|XP_002996608.1| hypothetical protein NCER_100268 [Nosema ceranae BRL01]
gi|239605923|gb|EEQ82937.1| hypothetical protein NCER_100268 [Nosema ceranae BRL01]
Length = 293
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 77/164 (46%), Gaps = 32/164 (19%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
++F + + SVAN+LRR+ I E PT AI+ V + N++VL DEF+A R+GLIPL
Sbjct: 42 LEFDLVGVDCSVANALRRILINEIPTFAIENVFIFDNTSVLPDEFLAHRLGLIPL----- 96
Query: 79 VDRILYSRDCTCVDFCSECSV---EFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNR 135
D C + V F L + VT+ D+K P
Sbjct: 97 -------------DVCPDLEVGDFHFELKKTNTSSEVMTVTSNDIKYIKKDGQP------ 137
Query: 136 DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
D ++++ DI I KL Q L + A K G+ HAKW+P
Sbjct: 138 DIEISK-----DIPIAKLAPKQALIIEMVACKNVGRVHAKWSPV 176
>gi|118490838|ref|XP_001238728.1| rna polymerase ii b3 subunit [Eimeria tenella strain Houghton]
gi|109238511|emb|CAK51475.1| rna polymerase ii b3 subunit [Eimeria tenella]
Length = 147
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 58/82 (70%), Gaps = 3/82 (3%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
++ +T+L+++ V+F + + + S+AN+LRRV I+E PT+AID V + N++VL DE+I R
Sbjct: 43 AIRVTELSNKVVRFTLSNCDASIANALRRVMISEVPTLAIDLVTVFENTSVLHDEYIVHR 102
Query: 68 IGLIPLTSDEV---VDRILYSR 86
+GL+P+ S V V R L SR
Sbjct: 103 LGLLPIDSSNVGNFVARDLASR 124
>gi|395534244|ref|XP_003769156.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Sarcophilus harrisii]
Length = 310
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 81/153 (52%), Gaps = 19/153 (12%)
Query: 41 ETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVE 100
+ PTMA++ V + N++++ DE +A R+GLIP+ +D R+ R+ D +++
Sbjct: 47 KVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADP---RLFEYRNQGDEDGTEIDTLQ 103
Query: 101 FTLDVKCVDDQTRHVTTAD---------LKSTDARVVPVTSRNRDADMNEYGET----DD 147
F L VKC + ++D + + +P+ ++ AD+ G DD
Sbjct: 104 FQLKVKCTRNPQAAKDSSDPNELYLNHKVYTKHMTWIPLGNQ---ADVFPEGTIRPVHDD 160
Query: 148 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
ILI +LR GQEL L + KG GK+HAK++P A
Sbjct: 161 ILIAQLRPGQELDLVMHCVKGIGKDHAKFSPVA 193
>gi|16082064|ref|NP_394490.1| DNA-directed RNA polymerase subunit D [Thermoplasma acidophilum DSM
1728]
gi|13124516|sp|Q9HJD9.1|RPOD_THEAC RecName: Full=DNA-directed RNA polymerase subunit D
gi|10640345|emb|CAC12159.1| DNA-dependent RNA polymerase, subunit D related protein
[Thermoplasma acidophilum]
Length = 271
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 92/187 (49%), Gaps = 35/187 (18%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQL--------EAN----S 56
V I L+D+ ++F+++ S AN+LRR I + P +AI+ V E N S
Sbjct: 3 VKIFKLSDKYIRFEIDGITPSQANALRRTLINDIPKLAIENVTFHHGEIRDSEGNVYDSS 62
Query: 57 TVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD-FCSECSVEFTLDVKCVDDQTRHV 115
L DE +A R+GLIPL +D ++ + C+C CS C+V ++++ V
Sbjct: 63 LPLFDEMVAHRLGLIPLKTDLTMN---FRDQCSCGGKGCSLCTVTYSINKL----GPSTV 115
Query: 116 TTADLKS-TDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
++DL++ + ++PV +I IVKL Q + + A A G KEHA
Sbjct: 116 FSSDLQAVSHPDLIPVDG--------------EIPIVKLGPKQAILITAEAILGTAKEHA 161
Query: 175 KWNPTAG 181
KW T+G
Sbjct: 162 KWQVTSG 168
>gi|448317558|ref|ZP_21507108.1| DNA-directed RNA polymerase subunit D [Natronococcus jeotgali DSM
18795]
gi|445602949|gb|ELY56919.1| DNA-directed RNA polymerase subunit D [Natronococcus jeotgali DSM
18795]
Length = 249
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 30/169 (17%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + D +F V AN +RR +A+ PTMAID V+ NS+V+ DE +A R+
Sbjct: 7 VEFVERGDREARFLVRGITPGFANGIRRAMVADVPTMAIDTVRFIENSSVMFDEQLALRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+ +F + +V ++DV+ + DL S+D+ V
Sbjct: 67 GLVPLTT------------PPEGEFVEDDTVTLSIDVEG----PATAYSGDLVSSDSLVE 110
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD N + I++L+ GQ L A A+ GK+HAK
Sbjct: 111 P-------ADEN-------VPIIELKDGQRLEAEADARLERGKDHAKHQ 145
>gi|449017050|dbj|BAM80452.1| RNA polymerase I, III common subunit [Cyanidioschyzon merolae
strain 10D]
Length = 383
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 98/214 (45%), Gaps = 54/214 (25%)
Query: 17 ENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 76
+ V F+V + N+LRRV +AE PTMAI++V + NSTV++DEF+A R+GL+P+ +D
Sbjct: 33 DEVSFEVSGVDAPFLNALRRVLLAEVPTMAIEYVTVNENSTVMNDEFLAHRLGLVPVLAD 92
Query: 77 EVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTR---HVTTADLKSTDARV--VPVT 131
R + R+ + ++ ++ F L V V+ + +++ + + D V +PV
Sbjct: 93 P--RRFEFRRESD--EPSAQNTICFRLRVPPVNRKAHPEWNLSDGAVFAGDDAVPSIPVY 148
Query: 132 S-------------------------RNRDADMNEYGETDDILI-----------VKLRK 155
S +D + E D L V++++
Sbjct: 149 SDDIIWEQLQTRVGESCLSSTEGASPHRSSSDAQQQAEATDGLASAADSTAAVEPVQVQR 208
Query: 156 G---------QELRLRAYAKKGFGKEHAKWNPTA 180
G Q L +R A KG G +HAKW+P A
Sbjct: 209 GILLTKMLRGQRLDIRMEAVKGLGHDHAKWSPVA 242
>gi|448352729|ref|ZP_21541510.1| DNA-directed RNA polymerase subunit D [Natrialba hulunbeirensis JCM
10989]
gi|448358769|ref|ZP_21547445.1| DNA-directed RNA polymerase subunit D [Natrialba chahannaoensis JCM
10990]
gi|445642008|gb|ELY95079.1| DNA-directed RNA polymerase subunit D [Natrialba hulunbeirensis JCM
10989]
gi|445644783|gb|ELY97792.1| DNA-directed RNA polymerase subunit D [Natrialba chahannaoensis JCM
10990]
Length = 249
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 30/169 (17%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + D + +F V+ + AN +RR +A+ PTMAID V+ NS+V+ DE +A R+
Sbjct: 7 VEFVEREDRDARFLVQGITPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+ V +F + +V ++DV+ + DL S+D V
Sbjct: 67 GLVPLTTPPV------------GEFVEDDTVTLSIDVEG----PATAYSGDLVSSDDLVQ 110
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD N + I+ L+ GQ L A A GK+HAK
Sbjct: 111 P-------ADEN-------VPIIDLKDGQRLEAEADAVLDRGKDHAKHQ 145
>gi|333910738|ref|YP_004484471.1| DNA-directed RNA polymerase [Methanotorris igneus Kol 5]
gi|333751327|gb|AEF96406.1| DNA-directed RNA polymerase [Methanotorris igneus Kol 5]
Length = 195
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 73/151 (48%), Gaps = 35/151 (23%)
Query: 28 LSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRD 87
+S +N++RR+ I+E PT AI+ V + N++ + DE +A R+GLIP+ + S D
Sbjct: 24 ISFSNAIRRIMISEVPTYAIENVYVHENTSSMHDEILAHRLGLIPIKGKPI------SED 77
Query: 88 CTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDD 147
+ FTL V + V ++DLKS + V +
Sbjct: 78 EV---------ITFTL----VKEGPCTVYSSDLKSENGEVA----------------FKN 108
Query: 148 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
I I+KL++GQ + L A G GK HAKW P
Sbjct: 109 IPIIKLKEGQRIELVCEATVGIGKVHAKWQP 139
>gi|13541396|ref|NP_111084.1| DNA-directed RNA polymerase subunit D [Thermoplasma volcanium GSS1]
gi|20978715|sp|Q97B93.1|RPOD_THEVO RecName: Full=DNA-directed RNA polymerase subunit D
gi|14324779|dbj|BAB59706.1| DNA-directed RNA polymerase D [Thermoplasma volcanium GSS1]
Length = 271
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 35/187 (18%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQL--------EAN----S 56
V I L+D+ + F+++ S AN+LRR I + P +AI+ V E N S
Sbjct: 3 VKIFKLSDKYMSFEIDGITPSQANALRRTLINDIPKLAIENVTFHHGEIRDAEGNVYDSS 62
Query: 57 TVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD-FCSECSVEFTLDVKCVDDQTRHV 115
L DE +A R+GLIPL +D ++ + C+C CS C+V ++++ V
Sbjct: 63 LPLFDEMVAHRLGLIPLKTDLSLN---FRDQCSCGGKGCSLCTVTYSIN----KIGPASV 115
Query: 116 TTADLKS-TDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
+ D+++ + +VPV DI IVKL Q + + A A G KEHA
Sbjct: 116 MSGDIQAISHPDLVPVDP--------------DIPIVKLGAKQAILITAEAILGTAKEHA 161
Query: 175 KWNPTAG 181
KW T+G
Sbjct: 162 KWQVTSG 168
>gi|448578450|ref|ZP_21643885.1| DNA-directed RNA polymerase subunit D [Haloferax larsenii JCM
13917]
gi|448592478|ref|ZP_21651585.1| DNA-directed RNA polymerase subunit D [Haloferax elongans ATCC
BAA-1513]
gi|445726991|gb|ELZ78607.1| DNA-directed RNA polymerase subunit D [Haloferax larsenii JCM
13917]
gi|445731483|gb|ELZ83067.1| DNA-directed RNA polymerase subunit D [Haloferax elongans ATCC
BAA-1513]
Length = 260
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 31/172 (18%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEF 63
A+ V + D +F ++AN +RR IA+ PT +I+ V+ N++V+ DE
Sbjct: 2 ADDFEVEFIEREDRRARFVARGLTPALANGIRRAMIADVPTFSIETVRFVENTSVMFDEM 61
Query: 64 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
I R+GL+PLT+ +F SV L+V D + D++S
Sbjct: 62 IGLRLGLVPLTT-------------PLDEFEPGDSVTVALEV----DGPATAYSGDIESA 104
Query: 124 DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
D VVP AD N + I++L++GQ L A A G+GK+HA+
Sbjct: 105 DDMVVP-------ADEN-------VPIIELKEGQRLEFEADAVLGYGKDHAR 142
>gi|150402492|ref|YP_001329786.1| RNA polymerase insert [Methanococcus maripaludis C7]
gi|150033522|gb|ABR65635.1| RNA polymerase insert [Methanococcus maripaludis C7]
Length = 180
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 77/158 (48%), Gaps = 49/158 (31%)
Query: 28 LSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPL-----TSDEVVDRI 82
LS +++LRR+ I+E PT AI+ V N++ + DE +A R+GLIP+ + DEV+ +
Sbjct: 9 LSFSSALRRIMISEVPTYAIENVYFYENTSSMYDEVLAHRLGLIPIKGVPVSGDEVI-VL 67
Query: 83 LYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEY 142
S++ C+ V ++DLKS E
Sbjct: 68 TISKEGPCM-----------------------VYSSDLKS------------------ES 86
Query: 143 GET--DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
GE ++I IVKL +GQ+L L A A G GK HAKW P
Sbjct: 87 GEPAFENIPIVKLAEGQKLELEAEALVGTGKIHAKWQP 124
>gi|315044489|ref|XP_003171620.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Arthroderma
gypseum CBS 118893]
gi|311343963|gb|EFR03166.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Arthroderma
gypseum CBS 118893]
Length = 380
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 18/178 (10%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + ++AN+ RR+ +AE P +AI++V ++ N++V+ DE +A R+GLIPL S E +
Sbjct: 66 FSLIGVDAAIANAFRRILLAEIPALAIEYVYIQNNTSVIQDEVLAHRLGLIPLKGSLEGL 125
Query: 80 DRILYSRDCTCVDFCSECSVE------FTLDVKCV---------DDQTRHVTTADLKSTD 124
+ + + + D S + E L +C +D T A + + D
Sbjct: 126 NWLRWFKAPKEGDPDSGSTHEDSNTIVLRLVKECTKNRSAPPGEEDPTILYNNAHIYAKD 185
Query: 125 ARVVPVTSRNR--DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
P + + D DIL+ KLR GQ++ + + KG G +HAK++P A
Sbjct: 186 LVFEPQGRQEKYFHGDGAIQSCNPDILLAKLRPGQKIDIEMHCIKGIGADHAKFSPVA 243
>gi|397772870|ref|YP_006540416.1| DNA-directed RNA polymerase [Natrinema sp. J7-2]
gi|448340555|ref|ZP_21529526.1| DNA-directed RNA polymerase subunit D [Natrinema gari JCM 14663]
gi|397681963|gb|AFO56340.1| DNA-directed RNA polymerase [Natrinema sp. J7-2]
gi|445629988|gb|ELY83258.1| DNA-directed RNA polymerase subunit D [Natrinema gari JCM 14663]
Length = 249
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 79/169 (46%), Gaps = 30/169 (17%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + D +F V AN +RR +A+ PTMAID V+ NS+V+ DE +A R+
Sbjct: 7 VEFVEREDREARFLVRGVTPGFANGIRRAMVADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+ V +F + +V ++DV+ + DL S+D V
Sbjct: 67 GLVPLTTPPV------------GEFGEDETVTLSIDVEG----PATAYSGDLVSSDELVK 110
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD N + I++L+ GQ L A A GK+HAK
Sbjct: 111 P-------ADEN-------VPIIELKDGQRLEAEADAVIDRGKDHAKHQ 145
>gi|300711111|ref|YP_003736925.1| DNA-directed RNA polymerase subunit D [Halalkalicoccus jeotgali B3]
gi|448296790|ref|ZP_21486841.1| DNA-directed RNA polymerase subunit D [Halalkalicoccus jeotgali B3]
gi|299124794|gb|ADJ15133.1| DNA-directed RNA polymerase subunit D [Halalkalicoccus jeotgali B3]
gi|445580773|gb|ELY35147.1| DNA-directed RNA polymerase subunit D [Halalkalicoccus jeotgali B3]
Length = 248
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 32/169 (18%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I + D + +F V + AN +RR +A+ PT++ID V+ NS+V+ +E +A R+
Sbjct: 7 VEIIERDDRSARFLVRGATPAFANGIRRAMLADVPTLSIDSVRFIENSSVMFNEQLALRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PL++ E D+ V LDV+ + DL S+D +V
Sbjct: 67 GLVPLSTPE--------------DYELGEDVTLALDVEG----PATAYSGDLVSSDEQVE 108
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD N + I++L++GQ L L A A G+EHAK
Sbjct: 109 P-------ADRN-------VPIIELKEGQRLELEADAVLDVGREHAKHQ 143
>gi|326915378|ref|XP_003203995.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like, partial [Meleagris gallopavo]
Length = 266
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 17/154 (11%)
Query: 39 IAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECS 98
+ E PTMA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +
Sbjct: 1 LPEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADP---RLFEYRNQGDEEGTEIDT 57
Query: 99 VEFTLDVKCVDDQTRHVTTAD---------LKSTDARVVPVTSRN---RDADMNEYGETD 146
++F L +KC + ++D + S VP+ ++ DAD D
Sbjct: 58 LQFQLKIKCSRNPQAAKESSDPNELYFNHKVYSKHMTWVPLGNQTDLFPDADFRPV--HD 115
Query: 147 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
DILI LR GQE+ + + KG GK+HAK++P A
Sbjct: 116 DILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVA 149
>gi|150399384|ref|YP_001323151.1| RNA polymerase insert [Methanococcus vannielii SB]
gi|150012087|gb|ABR54539.1| RNA polymerase insert [Methanococcus vannielii SB]
Length = 195
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 46/169 (27%)
Query: 15 TDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLI--- 71
T E VK +++ LS +++LRR+ I+E PT AI+ V N++ + DE +A R+GLI
Sbjct: 12 TGEIVKVELK-APLSFSSALRRLMISEVPTYAIENVYFYENTSSMYDEVLAHRLGLIPVK 70
Query: 72 --PLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVP 129
P++ DEVV L S++ C V ++DLKS +
Sbjct: 71 GVPVSGDEVVVFTL-SKEGPCT-----------------------VYSSDLKSEAGEIA- 105
Query: 130 VTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
++I IVKL +GQ+L A A G GK HAKW P
Sbjct: 106 ---------------FENIPIVKLAEGQKLEFEAEALVGTGKFHAKWQP 139
>gi|448337141|ref|ZP_21526223.1| DNA-directed RNA polymerase subunit D [Natrinema pallidum DSM 3751]
gi|445626487|gb|ELY79830.1| DNA-directed RNA polymerase subunit D [Natrinema pallidum DSM 3751]
Length = 249
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 79/169 (46%), Gaps = 30/169 (17%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + D +F V AN +RR +A+ PTMAID V+ NS+V+ DE +A R+
Sbjct: 7 VEFVEREDREARFLVRGVTPGFANGIRRAMVADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+ V +F + +V ++DV+ + DL S+D V
Sbjct: 67 GLVPLTTPPV------------GEFGEDETVTLSIDVEG----PATAYSGDLVSSDDLVQ 110
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD N + I++L+ GQ L A A GK+HAK
Sbjct: 111 P-------ADEN-------VPIIELKDGQRLEAEADAVIDRGKDHAKHQ 145
>gi|432329429|ref|YP_007247573.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Aciduliprofundum sp. MAR08-339]
gi|432136138|gb|AGB05407.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Aciduliprofundum sp. MAR08-339]
Length = 273
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 93/186 (50%), Gaps = 36/186 (19%)
Query: 11 ITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWV------------QLEANSTV 58
I D+ D ++F++ ++AN+LRR I + P +AI V ++ +ST
Sbjct: 5 ILDVQDRYIRFEIRGITPAMANALRRTLINDIPKLAIHKVIFHHGQIRDMEGKVYDSSTP 64
Query: 59 LSDEFIASRIGLIPLTSDEVVDRILYSRDCTCV--DFCSECSVEFTLDVKCVDDQTRHVT 116
L DE IA R+GLIPL +D + + +C + C C+V +TL+ +H
Sbjct: 65 LFDEIIAHRLGLIPLPTDL---NMKFRDECDHPPDEGCPLCTVTYTLN--------KH-G 112
Query: 117 TADLKSTDARVVPVTSRNRDADMNEYGETDDIL-IVKLRKGQELRLRAYAKKGFGKEHAK 175
A + S D ++PV +++ D ++ IVKL++ Q + L A A G KEHAK
Sbjct: 113 PATVYSGD--LIPVGD-------DKFRPVDPLIPIVKLKEHQAILLEAEAIMGTAKEHAK 163
Query: 176 WNPTAG 181
W T+G
Sbjct: 164 WQVTSG 169
>gi|238599273|ref|XP_002394835.1| hypothetical protein MPER_05213 [Moniliophthora perniciosa FA553]
gi|215464510|gb|EEB95765.1| hypothetical protein MPER_05213 [Moniliophthora perniciosa FA553]
Length = 182
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 12/106 (11%)
Query: 87 DCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK-------STDARVVPVTSRNRD--- 136
DCTC +C CS+ L+V C D T +T+ L+ D ++ R D
Sbjct: 1 DCTCTSYCPYCSITLLLNVSCPDAVTMDITSNHLEVQTDIDVGLDEPGEELSKRTPDFGH 60
Query: 137 -ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
N+ G +LI K+RKGQEL+L+ AKKG KEHAKW+P +
Sbjct: 61 PVGKNKLG-AQPVLICKIRKGQELKLKCVAKKGIAKEHAKWSPCSA 105
>gi|448346280|ref|ZP_21535166.1| DNA-directed RNA polymerase subunit D [Natrinema altunense JCM
12890]
gi|445632869|gb|ELY86075.1| DNA-directed RNA polymerase subunit D [Natrinema altunense JCM
12890]
Length = 249
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 79/169 (46%), Gaps = 30/169 (17%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + D +F V AN +RR +A+ PTMAID V+ NS+V+ DE +A R+
Sbjct: 7 VEFVEREDREARFLVRGVTPGFANGIRRAMVADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+ V +F + +V ++DV+ + DL S+D V
Sbjct: 67 GLVPLTTPPV------------GEFGEDETVTLSIDVEG----PATAYSGDLVSSDDLVE 110
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD N + I++L+ GQ L A A GK+HAK
Sbjct: 111 P-------ADEN-------VPIIELKDGQRLEAEADAVIDRGKDHAKHQ 145
>gi|159116466|ref|XP_001708454.1| DNA-directed RNA polymerase subunit D [Giardia lamblia ATCC 50803]
gi|157436566|gb|EDO80780.1| DNA-directed RNA polymerase subunit D [Giardia lamblia ATCC 50803]
Length = 350
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 81/175 (46%), Gaps = 20/175 (11%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD 80
F V + +AN++RR+ + E PTMAID V + NS++++DE + R+GL+P+ D
Sbjct: 45 FDVINLSPVIANTIRRIILDEVPTMAIDTVVVHENSSIIADEIFSHRLGLVPMNIDP--- 101
Query: 81 RIL-YSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTAD-----LKSTDARVVPVTSRN 134
R+ Y D + +V F LDV + + + S D VP+ +
Sbjct: 102 RLFEYHEDGDKIH--ERNTVVFKLDVTAPATYSSSFNDEEPGWFYVYSRDIYWVPIGGQK 159
Query: 135 R-------DADMNEYGET--DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
ADM+ DIL+ KL GQ + Y KG G+ HAK+ P
Sbjct: 160 DWLLKQEVRADMSSLPAPLDPDILLAKLAPGQRIFCEIYCHKGIGRMHAKFQPVG 214
>gi|323350237|gb|EGA84384.1| Rpc40p [Saccharomyces cerevisiae VL3]
Length = 265
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 16/156 (10%)
Query: 38 FIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD---FC 94
I+E P++A ++V N++V+ DE +A RIGL+PL D +L D D F
Sbjct: 1 MISEVPSVAAEYVYFFNNTSVIQDEVLAHRIGLVPLKVDP---DMLTWVDSNLPDDEKFT 57
Query: 95 SECSVEFTLDVKCVDDQTRHVTTADLKS------TDARVVPVTSRNRD----ADMNEYGE 144
E ++ +L+VKC + + D K AR + + R AD
Sbjct: 58 DENTIVLSLNVKCTRNPDAPKGSTDPKELYNNAHVYARDLKFEPQGRQSTTFADCPVVPA 117
Query: 145 TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
DIL+ KLR GQE+ L+A+ G G +HAK++P +
Sbjct: 118 DPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVS 153
>gi|448314284|ref|ZP_21503984.1| DNA-directed RNA polymerase subunit D [Natronolimnobius
innermongolicus JCM 12255]
gi|445595544|gb|ELY49650.1| DNA-directed RNA polymerase subunit D [Natronolimnobius
innermongolicus JCM 12255]
Length = 249
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 78/169 (46%), Gaps = 30/169 (17%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + D +F V AN +RR +A+ PTMAID V+ NS+V+ DE +A R+
Sbjct: 7 VEFVERGDREARFLVRGVTPGFANGIRRAMVADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+ +F + +V ++DV+ + DL S+D V
Sbjct: 67 GLVPLTT------------PPEGEFGEDETVTLSIDVEG----PATAYSGDLVSSDELVQ 110
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD N + I++L+ GQ L A A GK+HAK
Sbjct: 111 P-------ADEN-------VPIIELKDGQRLEAEADAVVDRGKDHAKHQ 145
>gi|15790216|ref|NP_280040.1| DNA-directed RNA polymerase II [Halobacterium sp. NRC-1]
gi|169235945|ref|YP_001689145.1| DNA-directed RNA polymerase subunit D [Halobacterium salinarum R1]
gi|13124517|sp|Q9HQJ4.1|RPOD_HALSA RecName: Full=DNA-directed RNA polymerase subunit D
gi|229564264|sp|B0R4Y2.1|RPOD_HALS3 RecName: Full=DNA-directed RNA polymerase subunit D
gi|10580674|gb|AAG19520.1| DNA-directed RNA polymerase II [Halobacterium sp. NRC-1]
gi|167727011|emb|CAP13797.1| DNA-directed RNA polymerase subunit D [Halobacterium salinarum R1]
Length = 248
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 77/169 (45%), Gaps = 32/169 (18%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V D D +F V + + AN +RR + + PT++ID V+ NS+V+ DE + R+
Sbjct: 8 VEFVDRDDREARFVVRNITPAFANGIRRAILVDVPTLSIDTVRFVENSSVMFDEQLGLRL 67
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+ E D+ + +V LDV+ + DL S D V
Sbjct: 68 GLVPLTTPE--------------DYAAGEAVTLALDVEG----PGTAYSGDLVSNDPEV- 108
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
AD N I I++L+ Q L L A A G G++HAK
Sbjct: 109 ------EAADEN-------IPIIELKDDQRLELEADAVMGHGRDHAKHQ 144
>gi|302655859|ref|XP_003019711.1| hypothetical protein TRV_06253 [Trichophyton verrucosum HKI 0517]
gi|291183453|gb|EFE39066.1| hypothetical protein TRV_06253 [Trichophyton verrucosum HKI 0517]
Length = 388
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 18/178 (10%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + ++AN+ RR+ +AE P +AI++V ++ N++V+ DE +A R+GLIPL S E +
Sbjct: 74 FSLIGVDAAIANAFRRILLAEIPALAIEYVYIQNNTSVIQDEVLAHRLGLIPLKGSLEGL 133
Query: 80 DRILYSRDCTCVDFCSECSVE------FTLDVKCV---------DDQTRHVTTADLKSTD 124
+ + + + D S + E L +C +D T A + + D
Sbjct: 134 NWLRWFKIPKEGDPDSGSTHEDSNTIVLRLVKECTKNRNAAPDEEDPTVLYNNAHIYAKD 193
Query: 125 ARVVPVTSRNR--DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
P + + D DIL+ KLR GQ++ + + KG G +HAK++P A
Sbjct: 194 LVFEPQGRQEKYFHGDGVIQPCNPDILLAKLRPGQKIDIEMHCIKGIGADHAKFSPVA 251
>gi|326475646|gb|EGD99655.1| DNA-directed RNA polymerase I and III [Trichophyton tonsurans CBS
112818]
gi|326485520|gb|EGE09530.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Trichophyton
equinum CBS 127.97]
Length = 380
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 18/178 (10%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + ++AN+ RR+ +AE P +AI++V ++ N++V+ DE +A R+GLIPL S E +
Sbjct: 66 FSLIGVDAAIANAFRRILLAEIPALAIEYVYIQNNTSVIQDEVLAHRLGLIPLKGSLEGL 125
Query: 80 DRILYSRDCTCVDFCSECSVE------FTLDVKCV---------DDQTRHVTTADLKSTD 124
+ + + + D S + E L +C +D T A + + D
Sbjct: 126 NWLRWFKIPKEGDPDSGSTHEDSNTIVLRLVKECTKNRNAAPDEEDPTVLYNNAHIYAKD 185
Query: 125 ARVVPVTSRNR--DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
P + + D DIL+ KLR GQ++ + + KG G +HAK++P A
Sbjct: 186 LVFEPQGRQEKYFHGDGVIQPCNPDILLAKLRPGQKIDIEMHCIKGIGADHAKFSPVA 243
>gi|327297236|ref|XP_003233312.1| DNA-directed RNA polymerase I and III [Trichophyton rubrum CBS
118892]
gi|326464618|gb|EGD90071.1| DNA-directed RNA polymerase I and III [Trichophyton rubrum CBS
118892]
Length = 380
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 93/179 (51%), Gaps = 20/179 (11%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + ++AN+ RR+ +AE P +AI++V ++ N++V+ DE +A R+GLIPL S E +
Sbjct: 66 FSLIGVDAAIANAFRRILLAEIPALAIEYVYIQNNTSVIQDEVLAHRLGLIPLKGSLEGL 125
Query: 80 DRILYSRDCTCVDFCSECSVE--FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDA 137
+ + + + D S + E T+ ++ V + T++ A D V+ +
Sbjct: 126 NWLRWFKIPKEGDPDSGSTHEDSNTIVLRLVKECTKNRNAAP-DEEDPTVLYNNAHIYAK 184
Query: 138 DM--------NEYGETD--------DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D+ +Y D DIL+ KLR GQ++ + + KG G +HAK++P A
Sbjct: 185 DLVFEPQGRQEKYFHGDGVIQPCNPDILLAKLRPGQKIDIEMHCIKGIGADHAKFSPVA 243
>gi|289580107|ref|YP_003478573.1| RNA polymerase insert [Natrialba magadii ATCC 43099]
gi|448281346|ref|ZP_21472652.1| DNA-directed RNA polymerase subunit D [Natrialba magadii ATCC
43099]
gi|289529660|gb|ADD04011.1| RNA polymerase insert [Natrialba magadii ATCC 43099]
gi|445578768|gb|ELY33168.1| DNA-directed RNA polymerase subunit D [Natrialba magadii ATCC
43099]
Length = 249
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 30/169 (17%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +F V+ + AN +RR +A+ PTMAID V+ NS+V+ DE +A R+
Sbjct: 7 VEFVEREERDARFLVQGITPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+ V +F + +V ++DV+ + DL S+D V
Sbjct: 67 GLVPLTTPPV------------GEFVEDDTVTLSIDVEG----PATAYSGDLVSSDDLVQ 110
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD N + I+ L+ GQ L A A GK+HAK
Sbjct: 111 P-------ADEN-------VPIIDLKDGQRLEAEADAVLDRGKDHAKHQ 145
>gi|134045316|ref|YP_001096802.1| DNA-directed RNA polymerase subunit D [Methanococcus maripaludis
C5]
gi|132662941|gb|ABO34587.1| DNA-directed RNA polymerase, subunit D [Methanococcus maripaludis
C5]
Length = 180
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 49/158 (31%)
Query: 28 LSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPL-----TSDEVVDRI 82
LS +++LRR+ I+E PT AI+ V N++ + DE +A R+GL+P+ + DEV+ +
Sbjct: 9 LSFSSALRRIMISEVPTYAIENVYFYENTSSMYDEVLAHRLGLVPIKGVPVSGDEVI-VL 67
Query: 83 LYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEY 142
S++ C+ V ++D+KS E
Sbjct: 68 TISKEGPCM-----------------------VYSSDIKS------------------ES 86
Query: 143 GET--DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
GE ++I IVKL +GQ+L L A A G GK HAKW P
Sbjct: 87 GEPAFENIPIVKLAEGQKLELEAEALVGTGKIHAKWQP 124
>gi|308158822|gb|EFO61385.1| DNA-directed RNA polymerase subunit D [Giardia lamblia P15]
Length = 350
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 24/183 (13%)
Query: 16 DENVKFQVEDTELS--VANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPL 73
DE F E LS +AN++RR+ + E PTMAID V + NS++++DE + R+GL+P+
Sbjct: 38 DECDTFSFEVINLSPIIANTIRRIILDEVPTMAIDTVVVHENSSIIADEIFSHRLGLVPM 97
Query: 74 TSDEVVDRIL-YSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTAD-----LKSTDARV 127
D R+ Y D + +V F LDV + + + + S D
Sbjct: 98 NIDP---RLFEYHEDGDKIH--ERNTVVFKLDVTAPATYSGNFNGEEPGWFYVYSRDICW 152
Query: 128 VPVTSRNRDADMNEYGETD----------DILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
+PV + +D + + +D +IL+ KL GQ + Y KG G+ HAK+
Sbjct: 153 IPVGGQ-KDWLLKQEVRSDMSSLPAPLDPNILLAKLAPGQRIFCELYCHKGIGRMHAKFQ 211
Query: 178 PTA 180
P
Sbjct: 212 PVG 214
>gi|399576713|ref|ZP_10770468.1| DNA-directed RNA polymerase, subunit d [Halogranum salarium B-1]
gi|399238157|gb|EJN59086.1| DNA-directed RNA polymerase, subunit d [Halogranum salarium B-1]
Length = 249
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 31/169 (18%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + D +F V ++AN +RR IA+ PT++ID V+ NS+V+ DE IA R+
Sbjct: 7 VEFIERGDRKARFLVRGLTPAIANGIRRAMIADVPTLSIDSVRFVENSSVMFDEMIALRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+ + DF V LDV+ + D+ S+ V
Sbjct: 67 GLVPLTT-------------SLDDFEEGDEVTLALDVEG----PATAYSGDMVSSVEYVQ 109
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD N I I++L++GQ L A A GK HAK
Sbjct: 110 P-------ADEN-------IPIIELKEGQHLEFEADAVLDSGKSHAKHQ 144
>gi|452836262|gb|EME38206.1| hypothetical protein DOTSEDRAFT_57363 [Dothistroma septosporum
NZE10]
Length = 393
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 90/212 (42%), Gaps = 58/212 (27%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD 80
F + + S+AN+ RR+ +AE PT++I+ V N++++ DE +A R+GLIPLT
Sbjct: 68 FSLVGVDSSIANAYRRILLAELPTLSIEDVYFFDNTSIIQDEVLAHRLGLIPLTGSRKGL 127
Query: 81 RIL--YSRDCTCVDFCSEC----------------------SVEFTLDVKCVDDQTRHVT 116
R + + + DF + +V +L V+C
Sbjct: 128 REMRWFKKPPPKDDFAARAQWDADRAEGRVETDNDAPNDFNTVVLSLQVEC------RWK 181
Query: 117 TADLKSTDARVVP----VTSRNRDADMNEY------------------GE------TDDI 148
T D D R + + + A+ N Y GE DI
Sbjct: 182 TVDEDGVDGRQLAKDGETDPKEKYANSNVYAHQIQFEPQGDRQTGWFSGEEIIRPVNPDI 241
Query: 149 LIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
LI KLR GQ + +R +A KG G +HAK++P A
Sbjct: 242 LIAKLRPGQRINVRMHAIKGIGADHAKFSPVA 273
>gi|452979634|gb|EME79396.1| hypothetical protein MYCFIDRAFT_216428 [Pseudocercospora fijiensis
CIRAD86]
Length = 392
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 92/208 (44%), Gaps = 45/208 (21%)
Query: 18 NVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDE 77
N F + + S+AN+ RR+ +AE PT+AI+ V + N++++ DE +A R+GLIPLT +
Sbjct: 65 NSAFSLIGVDASIANAYRRILLAELPTLAIEDVFIFDNTSIIQDEVLAHRLGLIPLTGGK 124
Query: 78 VVDRIL--YSRDCTCVDFCSEC---------------------SVEFTLDVKCV-----D 109
R + + + D+ + +V TL+V C +
Sbjct: 125 DGLRWMHWFKKPPPQSDYAARALWEQEQEESGDTSSSVNSDFNTVVMTLNVTCRWKNKEE 184
Query: 110 DQTRHVTTADLKSTDARVVPVTSRNRDADMN---------EY--GE------TDDILIVK 152
D A STD V S M EY GE +ILI K
Sbjct: 185 DGIDGKKVAQEGSTDPTEKYVNSNVYAHQMTFEPQGKLQREYFGGENAIRPVNPNILIAK 244
Query: 153 LRKGQELRLRAYAKKGFGKEHAKWNPTA 180
LR GQ + +R + KG G +HAK++P A
Sbjct: 245 LRPGQTINVRMHCCKGIGADHAKFSPVA 272
>gi|448330852|ref|ZP_21520128.1| DNA-directed RNA polymerase subunit D [Natrinema versiforme JCM
10478]
gi|445610688|gb|ELY64457.1| DNA-directed RNA polymerase subunit D [Natrinema versiforme JCM
10478]
Length = 249
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 30/169 (17%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + D +F + AN +RR +A+ PTMA+D V+ NS+V+ DE +A R+
Sbjct: 7 VEFVEREDREARFLIRGVTPGFANGIRRAMVADVPTMAVDTVRFVENSSVMFDEQLALRM 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+ V +F + +V ++DV+ + DL S D V
Sbjct: 67 GLVPLTTPPV------------GEFGEDETVTLSIDVEG----PATAYSGDLVSEDDLVQ 110
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD D++ I++L+ GQ L A A GK HAK
Sbjct: 111 P-------AD-------DNVPIIELKDGQRLEAEADAVVNRGKNHAKHQ 145
>gi|448400361|ref|ZP_21571353.1| DNA-directed RNA polymerase subunit D [Haloterrigena limicola JCM
13563]
gi|445667384|gb|ELZ20027.1| DNA-directed RNA polymerase subunit D [Haloterrigena limicola JCM
13563]
Length = 249
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 79/169 (46%), Gaps = 30/169 (17%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + D +F V + AN +RR +A+ PTMAID V+ NS+V+ DE +A R+
Sbjct: 7 VEFVEREDREARFLVRGVTPAFANGIRRAMVADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+ V +F + +V ++DV+ + DL S+D V
Sbjct: 67 GLVPLTTPPV------------GEFTEDDTVTLSIDVEG----PATAYSGDLVSSDELVQ 110
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD N I I++L+ Q L A A GK+HAK
Sbjct: 111 P-------ADEN-------IPIIELKDDQRLEAEADAVLDRGKDHAKHQ 145
>gi|255636318|gb|ACU18498.1| unknown [Glycine max]
Length = 233
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + LTD +++F + + ++AN+ RR+ +AE PTMAI+ V + N++V+ DE ++ R+
Sbjct: 88 VEVKRLTDSDIEFDMIGIDPAIANAFRRILVAEVPTMAIERVYIANNTSVVQDEVLSHRL 147
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTAD 119
GLIP+ +D R+ + D + ++ F L V+C Q R +D
Sbjct: 148 GLIPIRADP---RLFEYPENAGDDKNEKNTIVFKLHVRCQVGQPRITVKSD 195
>gi|159905734|ref|YP_001549396.1| RNA polymerase insert [Methanococcus maripaludis C6]
gi|159887227|gb|ABX02164.1| RNA polymerase insert [Methanococcus maripaludis C6]
Length = 180
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 49/158 (31%)
Query: 28 LSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPL-----TSDEVVDRI 82
LS +++LRR+ I+E PT AI+ V N++ + DE +A R+GLIP+ + DEV+ +
Sbjct: 9 LSFSSALRRIMISEVPTYAIENVYFYENTSSMYDEVLAHRLGLIPIKGVPVSGDEVI-VL 67
Query: 83 LYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEY 142
S++ C+ V ++D+KS E
Sbjct: 68 TISKEGPCM-----------------------VYSSDIKS------------------ES 86
Query: 143 GET--DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
GE ++I IVKL +GQ+L L A G GK HAKW P
Sbjct: 87 GEPAFENIPIVKLAEGQKLELETEALVGTGKIHAKWQP 124
>gi|336252152|ref|YP_004595259.1| DNA-directed RNA polymerase subunit D [Halopiger xanaduensis SH-6]
gi|335336141|gb|AEH35380.1| DNA-directed RNA polymerase subunit D [Halopiger xanaduensis SH-6]
Length = 249
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 30/169 (17%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + D +F V + AN +RR +A+ PTMAID V+ NS+V+ DE +A R+
Sbjct: 7 VEFVERDDREARFLVRGVTPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+ +F + +V ++DV+ + DL+S+D V
Sbjct: 67 GLVPLTT------------PPEDEFGEDATVTLSIDVEG----PATAYSGDLESSDELVQ 110
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD N + I++L+ Q L A A GK+HAK
Sbjct: 111 P-------ADEN-------VPIIELKDDQRLEAEADAVLDRGKDHAKHQ 145
>gi|357612390|gb|EHJ67960.1| DNA-directed RNA polymerase [Danaus plexippus]
Length = 322
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 11 ITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGL 70
I + ++F + + + AN+ RR+ ++E P+MAI+ V ++ N++++ DE +A R+GL
Sbjct: 44 IVRMDSTEMEFDLIGIQPAFANAFRRLMLSEVPSMAIEKVMIKNNTSIIQDEVLAHRLGL 103
Query: 71 IPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQ---TRHVTTADL------K 121
IPL +D R+ R + ++EF+L +KC +++ DL
Sbjct: 104 IPLKADP---RLFEFRPENAEEGTEFDTLEFSLKIKCTNNKYGPKDSFRAEDLYENHSVY 160
Query: 122 STDARVVPV---TSRNRDADMNEYGETDDILIVKLRKGQEL 159
S+ + P+ S +++AD+ DDILI K+R G EL
Sbjct: 161 SSSIKWHPIGNQASIHKEADVGPV--DDDILISKMRPGHEL 199
>gi|302511159|ref|XP_003017531.1| hypothetical protein ARB_04413 [Arthroderma benhamiae CBS 112371]
gi|291181102|gb|EFE36886.1| hypothetical protein ARB_04413 [Arthroderma benhamiae CBS 112371]
Length = 362
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 93/179 (51%), Gaps = 20/179 (11%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVV 79
F + + ++AN+ RR+ +AE P +AI++V ++ N++V+ DE +A R+GLIPL S E +
Sbjct: 48 FSLIGVDAAIANAFRRILLAEIPALAIEYVYIQNNTSVIQDEVLAHRLGLIPLKGSLEGL 107
Query: 80 DRILYSRDCTCVDFCSECSVE--FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDA 137
+ + + + D S + E T+ ++ V + T++ +A D V+ +
Sbjct: 108 NWLRWFKIPKEGDPDSGSTHEDSNTIVLRLVKECTKNRNSAP-DEEDPTVLYNNAHIYAK 166
Query: 138 DM--------NEYGETD--------DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D+ +Y D D L+ KLR GQ++ + + KG G +HAK++P A
Sbjct: 167 DLVFEPQGRQEKYFHGDGVIQPCNPDTLLAKLRPGQKIDIEMHCIKGIGADHAKFSPVA 225
>gi|448728476|ref|ZP_21710804.1| DNA-directed RNA polymerase subunit D [Halococcus saccharolyticus
DSM 5350]
gi|445796958|gb|EMA47443.1| DNA-directed RNA polymerase subunit D [Halococcus saccharolyticus
DSM 5350]
Length = 248
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 31/169 (18%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V D D + +F V + AN +RR +A+ PT+++D V++ NS+V+ DE I R+
Sbjct: 7 VAFIDRDDRDARFLVRGITPAFANGIRRAMVADVPTLSVDTVRVVENSSVMFDEQIGHRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
G++PL+ +F + SV LDV D + DL S+D+ V
Sbjct: 67 GMVPLS-------------APPNEFEPDDSVTLGLDVSGPD----TAYSGDLVSSDSVVE 109
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P D++ I++L++ Q L + A A GK HAK
Sbjct: 110 PA--------------EDNVPIIELKEDQRLEVEAEAVLDTGKSHAKHQ 144
>gi|448322475|ref|ZP_21511945.1| DNA-directed RNA polymerase subunit D [Natronococcus amylolyticus
DSM 10524]
gi|445601233|gb|ELY55222.1| DNA-directed RNA polymerase subunit D [Natronococcus amylolyticus
DSM 10524]
Length = 249
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 30/158 (18%)
Query: 20 KFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVV 79
+F V + AN +RR +A+ PTMAID V+ NS+V+ DE +A R+GL+PLT+
Sbjct: 18 RFLVRGITPAFANGIRRAMVADVPTMAIDTVRFVENSSVMFDEQLALRLGLVPLTT---- 73
Query: 80 DRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADM 139
+F + +V ++DV+ + DL S+D+ V AD
Sbjct: 74 --------PPEGEFVEDDTVTLSIDVEG----PATAYSGDLVSSDSLV-------EAADE 114
Query: 140 NEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
N + I++L++GQ L A A+ GK HAK
Sbjct: 115 N-------VPIIELKEGQRLEAEAEARLERGKNHAKHQ 145
>gi|448499366|ref|ZP_21611293.1| DNA-directed RNA polymerase subunit D [Halorubrum coriense DSM
10284]
gi|445697321|gb|ELZ49386.1| DNA-directed RNA polymerase subunit D [Halorubrum coriense DSM
10284]
Length = 250
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 69/149 (46%), Gaps = 31/149 (20%)
Query: 29 SVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC 88
+ AN +RR IA+ PT +ID VQ NS+V+ DE I R+GL+PLT+
Sbjct: 28 AFANGIRRAMIADVPTFSIDTVQFVENSSVMFDEMIGLRLGLVPLTT------------- 74
Query: 89 TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDI 148
DF V LDV+ + D++S+D +V V N +
Sbjct: 75 PLDDFEIGDEVTLALDVEG----PATAYSGDIESSDP-LVEVADEN-------------V 116
Query: 149 LIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
I++L++GQ L A A GKEHAK
Sbjct: 117 PIIELKEGQRLEFEATAVLDTGKEHAKHQ 145
>gi|391867820|gb|EIT77060.1| RNA polymerase I and III, subunit RPA40/RPC40 [Aspergillus oryzae
3.042]
Length = 290
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 31/166 (18%)
Query: 39 IAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSR--------DCTC 90
+AE P++AI++V + N++V+ DE +A R+GLIPL VD I + R D
Sbjct: 1 MAEVPSVAIEFVFVHNNTSVIQDEVLAQRLGLIPLKGS--VDGINWMRWFKKATEDDPEG 58
Query: 91 VDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSR--NRDADMNEYGETD-- 146
D ++ LD++C + AD D R + + RD + G +
Sbjct: 59 SDPSDYNTIVLRLDIECTKN-----PNADATENDPRKLYKNAHVYARDITFHPVGRQEQF 113
Query: 147 ------------DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
DILI KLR GQ++ L + KG G +HAK++P A
Sbjct: 114 FTGEDAIQPVNPDILIAKLRPGQKIDLEMHCIKGIGADHAKFSPVA 159
>gi|386001506|ref|YP_005919805.1| DNA-directed RNA polymerase subunit D [Methanosaeta harundinacea
6Ac]
gi|357209562|gb|AET64182.1| DNA-directed RNA polymerase subunit D [Methanosaeta harundinacea
6Ac]
Length = 266
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 20/170 (11%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + +L + +F + + AN++RR +AE P++AID + + N++VL DE ++ R+
Sbjct: 3 VELIELVEGRARFLLRGVTPAFANAIRRACLAEVPSLAIDEISIYDNTSVLFDEQLSLRL 62
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDF-CSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 127
GL+P+ +D+ + +C C C C V TL + V + DL+ +D V
Sbjct: 63 GLVPIKADD-LSLFRVPEECECGGAGCPACQVGMTLSA----EGPCTVHSGDLRFSDPGV 117
Query: 128 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
V + I I L +G++L L G HAKW
Sbjct: 118 KVVFEK--------------IPIAILGEGEKLMLEGIVTLNRGTVHAKWQ 153
>gi|398398399|ref|XP_003852657.1| hypothetical protein MYCGRDRAFT_109462 [Zymoseptoria tritici
IPO323]
gi|339472538|gb|EGP87633.1| hypothetical protein MYCGRDRAFT_109462 [Zymoseptoria tritici
IPO323]
Length = 474
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 92/207 (44%), Gaps = 48/207 (23%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVV 79
F + + S+AN+ RR+ ++E PT+AI+ V + N++++ DE + R+GLIPLT E +
Sbjct: 68 FSLVGVDASIANAFRRILLSELPTLAIEDVFMFDNTSIIQDEVLCHRLGLIPLTGGREGL 127
Query: 80 DRILYSR------------------DCTCVDFCSECSVEFT-----LDVKCV-----DDQ 111
+ + R + +D S ++ L+V+C +D
Sbjct: 128 QWLRWYRKPPPKDDYAALAAWEAEKESGGIDPASSVPSDYNTIVMELNVECRWATQEEDG 187
Query: 112 TRHVTTADLKSTDARVVPVTSR------------NRDADMNEYGE------TDDILIVKL 153
A STD + V S N + E GE DILI KL
Sbjct: 188 RDGKQLAKDGSTDPKEKYVNSSVYAHQFTFIPQGNHQPTLFE-GENAIRPVNPDILIAKL 246
Query: 154 RKGQELRLRAYAKKGFGKEHAKWNPTA 180
R GQ + LR + KG G +HAK++P A
Sbjct: 247 RPGQRIHLRVHCIKGIGADHAKFSPVA 273
>gi|448491314|ref|ZP_21608255.1| DNA-directed RNA polymerase subunit D [Halorubrum californiensis
DSM 19288]
gi|445693085|gb|ELZ45247.1| DNA-directed RNA polymerase subunit D [Halorubrum californiensis
DSM 19288]
Length = 250
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 70/149 (46%), Gaps = 31/149 (20%)
Query: 29 SVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC 88
+ AN +RR IA+ PT +ID VQ NS+V+ DE I R+GL+PLT+
Sbjct: 28 AFANGIRRAMIADVPTFSIDTVQFVENSSVMFDEMIGLRLGLVPLTT------------- 74
Query: 89 TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDI 148
DF V LDV+ + D++S+D +V V D++
Sbjct: 75 PLDDFELGDEVTLALDVEG----PATAYSGDIESSDP-LVEVAD-------------DNV 116
Query: 149 LIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
I++L++GQ L A A GKEHAK
Sbjct: 117 PIIELKEGQRLEFEANAVLDTGKEHAKHQ 145
>gi|296109380|ref|YP_003616329.1| RNA polymerase insert [methanocaldococcus infernus ME]
gi|295434194|gb|ADG13365.1| RNA polymerase insert [Methanocaldococcus infernus ME]
Length = 195
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 43/155 (27%)
Query: 28 LSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDR--ILYS 85
+S +N++RR+ I+E PT AI+ V + NS+ + DE +A R+GLIP+ + IL++
Sbjct: 24 ISFSNAIRRIMISEVPTFAIEDVFIYENSSSMDDEILAHRLGLIPIKGKPAFENETILFT 83
Query: 86 --RDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYG 143
++ CV V ++DLKS + V
Sbjct: 84 LEKEGPCV-----------------------VYSSDLKSDNGEVA--------------- 105
Query: 144 ETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+I IVKL + Q +++ A G GK HAKW P
Sbjct: 106 -FKNIPIVKLGEKQRIKIECEAVPGIGKVHAKWQP 139
>gi|432957842|ref|XP_004085906.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like, partial [Oryzias latipes]
Length = 264
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 21/163 (12%)
Query: 35 RRVFIA--ETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD 92
R VF + PTMAI+ V + N++++ DE +A R+GL+P+ +D L+ +
Sbjct: 28 RNVFYCCFQVPTMAIEKVFIYNNTSIVQDEVLAHRLGLVPIKADPR----LFEYKNIAEE 83
Query: 93 F----CSEC-SVEFTLDVKCVDDQTRHVTTADLK---------STDARVVPVTSR-NRDA 137
F SE +++ L +KC + ++D + S D VP+ ++ + A
Sbjct: 84 FGEQEASEIDTIQLQLKIKCSRNPRASKESSDPRELYLNHIVYSKDINWVPLGNQADVFA 143
Query: 138 DMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D DDI+I +LR GQEL + + KG GK+HAK++P A
Sbjct: 144 DSRIGAVHDDIVIAQLRPGQELDVVMHCVKGIGKDHAKFSPVA 186
>gi|453085895|gb|EMF13938.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Mycosphaerella populorum SO2202]
Length = 393
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 87/206 (42%), Gaps = 46/206 (22%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD 80
F + + SVAN+LRR+ +AE PT+AI+ V + N++++ DE +A R+GLIPL +
Sbjct: 68 FSLVGVDASVANALRRIALAELPTLAIENVYMYDNTSIIQDEVLAHRMGLIPLKGGKEGL 127
Query: 81 RILY--------SRDCTCVDFCSE----------------CSVEFTLDVKC--------- 107
R + S F +E +V L V+C
Sbjct: 128 RWMQWFKKTPPESDHAAYAQFMAEQEEEGADRSASTPSDLNTVVLNLKVECRWKTVEEDG 187
Query: 108 VD----------DQTRHVTTADLKSTDARVVPVTSRNRDADMNEYG---ETDDILIVKLR 154
VD D T +++ + P R + E DILI KLR
Sbjct: 188 VDGKKLAREGSTDPTEKYVNSNVYAHQITFEPQGQRQPEFFSGENAIRPVNPDILIAKLR 247
Query: 155 KGQELRLRAYAKKGFGKEHAKWNPTA 180
GQ + + + KG G +HAK++P A
Sbjct: 248 PGQRIHMTMHCVKGIGADHAKFSPVA 273
>gi|448534354|ref|ZP_21621682.1| DNA-directed RNA polymerase subunit D [Halorubrum hochstenium ATCC
700873]
gi|445704836|gb|ELZ56743.1| DNA-directed RNA polymerase subunit D [Halorubrum hochstenium ATCC
700873]
Length = 250
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 70/149 (46%), Gaps = 31/149 (20%)
Query: 29 SVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC 88
++AN +RR IA+ PT +ID V+ NS+V+ DE I R+GLIPLT+
Sbjct: 28 ALANGIRRAMIADVPTFSIDTVRFVENSSVMFDEMIGLRLGLIPLTT------------- 74
Query: 89 TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDI 148
DF V LDV+ + D++S+D +V V N +
Sbjct: 75 PLDDFEVGDEVTLALDVEG----PATAYSGDIESSDP-LVEVADEN-------------V 116
Query: 149 LIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
I++L++GQ L A A GKEHAK
Sbjct: 117 PIIELKEGQRLEFEADAVLDTGKEHAKHQ 145
>gi|297599856|ref|NP_001047973.2| Os02g0723600 [Oryza sativa Japonica Group]
gi|45736002|dbj|BAD13030.1| putative RNA polymerase subunit [Oryza sativa Japonica Group]
gi|222623582|gb|EEE57714.1| hypothetical protein OsJ_08197 [Oryza sativa Japonica Group]
gi|255671218|dbj|BAF09887.2| Os02g0723600 [Oryza sativa Japonica Group]
Length = 300
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 51/68 (75%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I+ LT+++++F + + S+AN+ RR+ IAE PTMAI+ V + N++V++DE ++ R+
Sbjct: 72 VEISRLTEDDMEFDMIGIDASIANAFRRILIAELPTMAIEKVLMVDNTSVIADEVLSHRL 131
Query: 69 GLIPLTSD 76
GLIPL +D
Sbjct: 132 GLIPLDAD 139
>gi|269986616|gb|EEZ92898.1| RNA polymerase insert [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 248
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 32/169 (18%)
Query: 11 ITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGL 70
I + D K +ED ++S+ N+LRR I T+ I+ V++ N++ + DE +ASR+GL
Sbjct: 5 IVETKDNTAKILLEDFKVSMVNALRRSIINGVNTLTIEDVKIYKNTSFMYDEILASRLGL 64
Query: 71 IPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPV 130
IP+ T ++ + F L + + V +DL +D VVP
Sbjct: 65 IPIK--------------TPIELKGKGKFSFKLK----EMGPKAVHASDLVPSDKDVVPA 106
Query: 131 TSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
S D+LI+ L+ G+ + L A G G +H+K+ P
Sbjct: 107 IS--------------DMLIINLKDGEAIDLEAETAWGNGADHSKFTPA 141
>gi|253744733|gb|EET00889.1| DNA-directed RNA polymerase subunit D [Giardia intestinalis ATCC
50581]
Length = 350
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 20/175 (11%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD 80
F V + +AN++RR+ + E PT+AID V + NS++++DE + R+GL+P+ D
Sbjct: 45 FDVINLSPVIANTIRRIILDEVPTIAIDTVVVHENSSIIADEIFSHRLGLVPMNIDP--- 101
Query: 81 RIL-YSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTAD-----LKSTDARVVPVTSRN 134
R+ Y D + +V F LDV + + S D VP+ +
Sbjct: 102 RLFEYHEDGDKIH--ERNTVVFKLDVTAPATYPGSFQDGEPRWFYVYSRDIHWVPIGGQK 159
Query: 135 --------RDADMNEYGETD-DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
R + D DIL+ KL GQ + Y KG G HAK+ P
Sbjct: 160 NWLPEQEVRPGTSSLPAPLDPDILLAKLAPGQRIFCEIYCHKGVGHTHAKFQPVG 214
>gi|448391689|ref|ZP_21566784.1| DNA-directed RNA polymerase subunit D [Haloterrigena salina JCM
13891]
gi|445665101|gb|ELZ17779.1| DNA-directed RNA polymerase subunit D [Haloterrigena salina JCM
13891]
Length = 249
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 30/169 (17%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + +F V AN +RR +A+ PTMAID V+ NS+V+ DE +A R+
Sbjct: 7 VEFVERGEREARFLVRGVTPGFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+ +F + +V ++DV+ + DL S D V
Sbjct: 67 GLVPLTT------------PPEGEFGEDETVTLSIDVEG----PATAYSGDLVSNDELVQ 110
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD N + I+ L+ Q L A A +GK+HAK
Sbjct: 111 P-------ADQN-------VPIIDLKDDQRLEAEADAVVDYGKDHAKHQ 145
>gi|268324993|emb|CBH38581.1| putative DNA-directed RNA polymerase, subunit D [uncultured
archaeon]
Length = 213
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 28/177 (15%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V I D ++ V + ++ AN+LRRV IAE P +AID + + N+++L DE +A R+
Sbjct: 3 VKIADRGEKEVVIALSGVKVRFANALRRVMIAEVPKLAIDELNIRENTSLLYDEQLALRL 62
Query: 69 GLIPLTSD----EVVDRILYSRDCTCVDFCSECSV---EFTLDVKCVDDQTRHVTTADLK 121
L+PL +D + D+I + T + V E V+ + ++ L
Sbjct: 63 ALVPLKTDLKDYKEEDQITLTLKATSPEKAGHTMVYSKELISSYPKVEAASENIPIVKLI 122
Query: 122 STDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
ST+ + + + R Q++ L A A+ G G+EHAKW P
Sbjct: 123 STEREIGAIKTVAR---------------------QKIDLDAIARWGRGEEHAKWQP 158
>gi|33086616|gb|AAP92620.1| Ac2-127 [Rattus norvegicus]
Length = 260
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 78/151 (51%), Gaps = 23/151 (15%)
Query: 45 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 104
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 1 MAVEKVLVYNNTSIVQDEILAHRLGLIPILADP---RLFEYRNPGEEEGTEIDTLQFRLQ 57
Query: 105 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 149
V+C TR+ + A S+D + V + AD+ G DDIL
Sbjct: 58 VRC----TRNPSAAK-DSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTVRPVHDDIL 112
Query: 150 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
I +LR GQE+ L + KG GK+HAK++P A
Sbjct: 113 IAQLRPGQEIDLMMHCVKGIGKDHAKFSPVA 143
>gi|301095579|ref|XP_002896889.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Phytophthora infestans T30-4]
gi|262108536|gb|EEY66588.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Phytophthora infestans T30-4]
Length = 304
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 18/178 (10%)
Query: 5 NQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFI 64
Q + H D+ E+ VE ++ V ++ + E I V + NS+++ DE +
Sbjct: 11 GQDAPHQPDVESESSYSFVEQSKRQVKVKIQSLTDDEIVFDLIGHVYIWNNSSIIQDEVL 70
Query: 65 ASRIGLIPLTS-DEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 123
A R+GLIPL + DE + I++ D TC D + D T+ + ++ + S
Sbjct: 71 AHRLGLIPLNATDE--NTIVFKLDVTC-----------KFDPEHPKDPTKAIHSS-VYSR 116
Query: 124 DARVVPVTSRN-RDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D VP ++ R + E DIL+ KLR GQ + L A+ +KG GK+HAK++P A
Sbjct: 117 DLEWVPQGNQEERFGSIRPVHE--DILMAKLRPGQSIALEAHCRKGVGKDHAKFSPVA 172
>gi|448306201|ref|ZP_21496110.1| DNA-directed RNA polymerase subunit D [Natronorubrum bangense JCM
10635]
gi|445598615|gb|ELY52670.1| DNA-directed RNA polymerase subunit D [Natronorubrum bangense JCM
10635]
Length = 249
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 76/167 (45%), Gaps = 30/167 (17%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + D +F V + AN LRR +A+ PT+AID V+ NS+V+ DE +A R+
Sbjct: 7 VEFVEHEDRYARFLVRGVTPAFANGLRRAMLADVPTLAIDTVRFIENSSVMFDEQLALRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+ +F + +V ++DV+ + DL S+D V
Sbjct: 67 GLVPLTT------------PPEAEFAEDDTVTLSIDVEG----PATAYSGDLVSSDDLVQ 110
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
P AD N I I+ L+ Q L A A GK HAK
Sbjct: 111 P-------ADEN-------IPIIDLKDNQRLEAEADAVFNRGKNHAK 143
>gi|448361735|ref|ZP_21550348.1| DNA-directed RNA polymerase subunit D [Natrialba asiatica DSM
12278]
gi|445649415|gb|ELZ02352.1| DNA-directed RNA polymerase subunit D [Natrialba asiatica DSM
12278]
Length = 249
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 30/169 (17%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + D + +F V + AN +RR +A+ PTMAID V+ NS+V+ DE +A R+
Sbjct: 7 VEFVEREDRDARFLVRGITPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+ +F + +V ++DV+ + DL S+D V
Sbjct: 67 GLVPLTT------------PPEGEFGEDDTVTLSIDVEG----PATAYSGDLISSDELVQ 110
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD N + I+ L+ Q L A A GK+HAK
Sbjct: 111 P-------ADEN-------VPIIDLKDDQRLEAEADAVLDRGKDHAKHQ 145
>gi|110668834|ref|YP_658645.1| DNA-directed RNA polymerase subunit D [Haloquadratum walsbyi DSM
16790]
gi|109626581|emb|CAJ53045.1| DNA-directed RNA polymerase subunit D [Haloquadratum walsbyi DSM
16790]
Length = 262
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 31/165 (18%)
Query: 13 DLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIP 72
D D + +F V +VAN +RR +A+ PT +I+ V+ NS+V+ DE I R+GL+P
Sbjct: 13 DTDDRSARFLVRGVTPAVANGIRRAMVADIPTFSIEDVRFVENSSVMFDEMIGLRLGLVP 72
Query: 73 LTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTS 132
LT+ DF +V +LD+ QT + + D+ S+D V P
Sbjct: 73 LTT-------------PVDDFDIGDTVTLSLDITG--PQTAY--SGDIVSSDRLVEP--- 112
Query: 133 RNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
AD N I I++L++ L L A A GK HAK
Sbjct: 113 ----ADEN-------IPIIELKENHRLELEADAVLDTGKSHAKQQ 146
>gi|385804352|ref|YP_005840752.1| DNA-directed RNA polymerase subunit D [Haloquadratum walsbyi C23]
gi|339729844|emb|CCC41127.1| DNA-directed RNA polymerase subunit D [Haloquadratum walsbyi C23]
Length = 262
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 31/165 (18%)
Query: 13 DLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIP 72
D D + +F V +VAN +RR +A+ PT +I+ V+ NS+V+ DE I R+GL+P
Sbjct: 13 DTDDRSARFLVRGVTPAVANGIRRAMVADIPTFSIEDVRFVENSSVMFDEMIGLRLGLVP 72
Query: 73 LTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTS 132
LT+ DF +V +LD+ QT + + D+ S+D V P
Sbjct: 73 LTT-------------PVDDFDIGDTVTLSLDITG--PQTAY--SGDIVSSDRLVEP--- 112
Query: 133 RNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
AD N I I++L++ L L A A GK HAK
Sbjct: 113 ----ADEN-------IPIIELKENHRLELEADAVLDTGKSHAKQQ 146
>gi|448425439|ref|ZP_21582769.1| DNA-directed RNA polymerase subunit D [Halorubrum terrestre JCM
10247]
gi|448453316|ref|ZP_21593759.1| DNA-directed RNA polymerase subunit D [Halorubrum litoreum JCM
13561]
gi|448485426|ref|ZP_21606651.1| DNA-directed RNA polymerase subunit D [Halorubrum arcis JCM 13916]
gi|448504669|ref|ZP_21614010.1| DNA-directed RNA polymerase subunit D [Halorubrum distributum JCM
9100]
gi|448519096|ref|ZP_21617872.1| DNA-directed RNA polymerase subunit D [Halorubrum distributum JCM
10118]
gi|445680510|gb|ELZ32953.1| DNA-directed RNA polymerase subunit D [Halorubrum terrestre JCM
10247]
gi|445701879|gb|ELZ53851.1| DNA-directed RNA polymerase subunit D [Halorubrum distributum JCM
9100]
gi|445704112|gb|ELZ56030.1| DNA-directed RNA polymerase subunit D [Halorubrum distributum JCM
10118]
gi|445807636|gb|EMA57719.1| DNA-directed RNA polymerase subunit D [Halorubrum litoreum JCM
13561]
gi|445818080|gb|EMA67947.1| DNA-directed RNA polymerase subunit D [Halorubrum arcis JCM 13916]
Length = 250
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 31/149 (20%)
Query: 29 SVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC 88
+ AN +RR IA+ PT +ID V+ NS+V+ DE I R+GL+PLT+
Sbjct: 28 AFANGIRRAMIADVPTFSIDTVRFVENSSVMFDEMIGLRLGLVPLTT------------- 74
Query: 89 TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDI 148
DF V LDV+ + D++S+D +V V N +
Sbjct: 75 PLDDFELGDEVTLALDVEG----PATAYSGDIESSDP-LVEVADEN-------------V 116
Query: 149 LIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
I++L++GQ L A A GKEHAK
Sbjct: 117 PIIELKEGQRLEFEADAVLDTGKEHAKHQ 145
>gi|160331409|ref|XP_001712412.1| rpa5 [Hemiselmis andersenii]
gi|159765860|gb|ABW98087.1| rpa5 [Hemiselmis andersenii]
Length = 335
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 13/176 (7%)
Query: 8 SVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
S+ E + FQ++ + S +N+LRR+ ++E I+ V NS++L+DE IA R
Sbjct: 47 SIKAIKKNQEELIFQIKGFDFSFSNALRRILLSEISIFGIEKVFFYDNSSILNDEIIAHR 106
Query: 68 IGLIPL-TSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVT--TADLKSTD 124
+G+IPL S +D YS +F + L ++ ++++ + LK
Sbjct: 107 LGMIPLFVSPHFID---YSVKKKTQNF---LKIILNLRANHPNNFFKNISIYSKSLKWKK 160
Query: 125 ARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V+ +N DILI KL GQ++ + G G HAK++P
Sbjct: 161 YGVLKSFFKNVPVK----PVFKDILIAKLNPGQKIECECESLIGIGNNHAKFSPVG 212
>gi|448460443|ref|ZP_21597268.1| DNA-directed RNA polymerase subunit D [Halorubrum lipolyticum DSM
21995]
gi|445807184|gb|EMA57270.1| DNA-directed RNA polymerase subunit D [Halorubrum lipolyticum DSM
21995]
Length = 250
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 68/150 (45%), Gaps = 33/150 (22%)
Query: 29 SVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC 88
+ AN +RR IA+ PT +ID V+ NS+V+ DE I R+GL+PLT+
Sbjct: 28 AFANGIRRAMIADVPTFSIDTVRFVENSSVMFDEMIGLRLGLVPLTT------------- 74
Query: 89 TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDD- 147
DF V LDV+ + D++S D V G DD
Sbjct: 75 PLDDFEVGDEVTLALDVEG----PATAYSGDIESADPLV---------------GVADDN 115
Query: 148 ILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
+ I++L++GQ L A A GKEHAK
Sbjct: 116 VPIIELKEGQRLEFEATAVLDSGKEHAKHQ 145
>gi|45358885|ref|NP_988442.1| DNA-directed RNA polymerase subunit D [Methanococcus maripaludis
S2]
gi|45047751|emb|CAF30878.1| DNA-directed RNA polymerase, subunit D [Methanococcus maripaludis
S2]
Length = 180
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 74/158 (46%), Gaps = 49/158 (31%)
Query: 28 LSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPL-----TSDEVVDRI 82
LS +++LRR+ I+E PT AI+ V N++ + DE +A R+GLIP+ + DEV+ +
Sbjct: 9 LSFSSALRRIMISEVPTYAIENVYFYENTSSMYDEVLAHRLGLIPIKGVPVSGDEVI-VL 67
Query: 83 LYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEY 142
S++ C V ++DLKS E
Sbjct: 68 TISKEGPCT-----------------------VYSSDLKS------------------ES 86
Query: 143 GET--DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
GE ++I IVKL + Q+L L A G GK HAKW P
Sbjct: 87 GEPAFENIPIVKLAEDQKLELETEALVGTGKIHAKWQP 124
>gi|6172230|dbj|BAA85898.1| RNA-polymerase D [Halobacterium salinarum]
Length = 249
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 75/169 (44%), Gaps = 33/169 (19%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V D D +F V + + AN +RR + + PT++ID V+ NS+V+ DE + R+
Sbjct: 8 VEFVDRDDREARFVVRNITPAFANGIRRAILVDVPTLSIDTVRFVENSSVMFDEQLGLRL 67
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+ E D+ + V LDV+ DL S D V
Sbjct: 68 GLVPLTTPE--------------DYPA-GEVTLALDVEG----PGTAYPGDLVSNDPEV- 107
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
AD N I I++L+ Q L L A A G G++HAK
Sbjct: 108 ------EAADEN-------IPIIELKDDQRLELEADAVDGHGRDHAKHQ 143
>gi|448409409|ref|ZP_21574707.1| DNA-directed RNA polymerase subunit D [Halosimplex carlsbadense
2-9-1]
gi|445673012|gb|ELZ25579.1| DNA-directed RNA polymerase subunit D [Halosimplex carlsbadense
2-9-1]
Length = 255
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 27/171 (15%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + D +F V + AN +RR +A+ PT +ID +++ NS+V+ DE I R+
Sbjct: 6 VEFVERGDREARFLVRGITPAFANGIRRAMVADVPTFSIDELRVVENSSVMFDEQIGLRL 65
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVT--TADLKSTDAR 126
GL+PLT+ E + E ++ ++ ++ T VT + D+ S+D
Sbjct: 66 GLVPLTTPE-----------GEFEIGDEVTLALDVEGPSREETTETVTAYSGDIVSSDEM 114
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
V P D+I I+ L+ GQ L A A G++HAK
Sbjct: 115 VRPA--------------NDNIPIIDLKAGQRLEAEADAVLDRGRDHAKHQ 151
>gi|448474335|ref|ZP_21602194.1| DNA-directed RNA polymerase subunit D [Halorubrum aidingense JCM
13560]
gi|445817642|gb|EMA67511.1| DNA-directed RNA polymerase subunit D [Halorubrum aidingense JCM
13560]
Length = 250
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 68/149 (45%), Gaps = 31/149 (20%)
Query: 29 SVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC 88
+ AN +RR IA+ PT +ID V NS+V+ DE I R+GLIPLT+
Sbjct: 28 AFANGIRRAMIADVPTFSIDTVNFVENSSVMFDEMIGLRLGLIPLTT------------- 74
Query: 89 TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDI 148
DF V LDV+ + D++S D V AD D++
Sbjct: 75 PLDDFEIGDEVTLALDVEG----PATAYSGDIESADPLV-------EVAD-------DNV 116
Query: 149 LIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
I++L++GQ L A A GKEHAK
Sbjct: 117 PIIELKEGQRLEFEATAVLDSGKEHAKHQ 145
>gi|340624633|ref|YP_004743086.1| DNA-directed RNA polymerase subunit D [Methanococcus maripaludis
X1]
gi|339904901|gb|AEK20343.1| DNA-directed RNA polymerase subunit D [Methanococcus maripaludis
X1]
Length = 195
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 74/158 (46%), Gaps = 49/158 (31%)
Query: 28 LSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPL-----TSDEVVDRI 82
LS +++LRR+ I+E PT AI+ V N++ + DE +A R+GLIP+ + DEV+ +
Sbjct: 24 LSFSSALRRIMISEVPTYAIENVYFYENTSSMYDEVLAHRLGLIPIKGVPVSGDEVI-VL 82
Query: 83 LYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEY 142
S++ C V ++DLKS E
Sbjct: 83 TISKEGPCT-----------------------VYSSDLKS------------------ES 101
Query: 143 GET--DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
GE ++I IVKL + Q+L L A G GK HAKW P
Sbjct: 102 GEPAFENIPIVKLAEDQKLELETEALVGTGKIHAKWQP 139
>gi|448431138|ref|ZP_21584966.1| DNA-directed RNA polymerase subunit D [Halorubrum tebenquichense
DSM 14210]
gi|445688285|gb|ELZ40550.1| DNA-directed RNA polymerase subunit D [Halorubrum tebenquichense
DSM 14210]
Length = 250
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 71/153 (46%), Gaps = 39/153 (25%)
Query: 29 SVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD----EVVDRILY 84
++AN +RR IA+ PT +ID V+ NS+V+ DE I R+GLIPLT+ EV D +
Sbjct: 28 ALANGIRRAMIADVPTFSIDTVRFVENSSVMFDEMIGLRLGLIPLTTPLDDFEVGDEVTL 87
Query: 85 SRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGE 144
+ D + ++ D++C D V AD
Sbjct: 88 ALDVEG------PATAYSGDIECSD---PLVEVAD------------------------- 113
Query: 145 TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
D++ I++L++GQ L A A GKEHAK
Sbjct: 114 -DNVPIIELKEGQRLEFEADAVLDTGKEHAKHQ 145
>gi|448733727|ref|ZP_21715969.1| DNA-directed RNA polymerase subunit D [Halococcus salifodinae DSM
8989]
gi|445802247|gb|EMA52554.1| DNA-directed RNA polymerase subunit D [Halococcus salifodinae DSM
8989]
Length = 248
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 31/167 (18%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V D D + +F V + AN +RR +A+ PT++ID V++ NS+V+ DE I R+
Sbjct: 7 VAFIDRDDRDARFLVRGITPAFANGIRRAMVADVPTLSIDTVRVVENSSVMFDEQIGHRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
G+IPL + +F S V +DV D + DL S+D+ V
Sbjct: 67 GMIPL-------------NAPPNEFESGEGVTLGIDVSGPD----TAYSGDLVSSDSVVE 109
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
P D++ I+ L++ Q L A A GK HAK
Sbjct: 110 PA--------------EDNVPIIDLKEDQRLEAEAEAVLDTGKTHAK 142
>gi|383621940|ref|ZP_09948346.1| DNA-directed RNA polymerase subunit D [Halobiforma lacisalsi AJ5]
gi|448702865|ref|ZP_21700222.1| DNA-directed RNA polymerase subunit D [Halobiforma lacisalsi AJ5]
gi|445776958|gb|EMA27934.1| DNA-directed RNA polymerase subunit D [Halobiforma lacisalsi AJ5]
Length = 249
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + +F V AN +RR +A+ PTMAID V+ NS+V+ DE +A R+
Sbjct: 7 VEFVEHGEREARFLVRGISPGFANGIRRAMVADVPTMAIDTVRFIENSSVMFDEQLALRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+ +F + +V ++DV+ + DL S D V
Sbjct: 67 GLVPLTT------------PPEGEFGEDDTVTLSIDVEG----PATAYSGDLVSEDDLVQ 110
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD N + I++L++ Q L A A GK+HAK
Sbjct: 111 P-------ADEN-------VPIIELKEDQRLEAEADAVLDHGKDHAKHQ 145
>gi|284165822|ref|YP_003404101.1| RNA polymerase insert [Haloterrigena turkmenica DSM 5511]
gi|284015477|gb|ADB61428.1| RNA polymerase insert [Haloterrigena turkmenica DSM 5511]
Length = 249
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 30/147 (20%)
Query: 31 ANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTC 90
AN +RR +A+ PTMAID V+ NS+V+ DE +A R+GL+PLT+
Sbjct: 29 ANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLALRLGLVPLTT------------PPE 76
Query: 91 VDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILI 150
+F + +V ++DV+ + DL S+D V P AD N + I
Sbjct: 77 GEFGEDETVTLSIDVEG----PATAYSGDLVSSDDLVQP-------ADEN-------VPI 118
Query: 151 VKLRKGQELRLRAYAKKGFGKEHAKWN 177
+ L+ Q L A A +GK+HAK
Sbjct: 119 IDLKDDQRLEAEADAVLDYGKDHAKHQ 145
>gi|448348754|ref|ZP_21537602.1| DNA-directed RNA polymerase subunit D [Natrialba taiwanensis DSM
12281]
gi|445642415|gb|ELY95483.1| DNA-directed RNA polymerase subunit D [Natrialba taiwanensis DSM
12281]
Length = 249
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 30/169 (17%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + D + +F V + AN +RR +A+ PTMAID V+ NS+V+ DE +A R+
Sbjct: 7 VEFVEREDRDARFLVRGITPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PL++ +F + +V ++DV+ + DL S+D V
Sbjct: 67 GLVPLST------------PPEGEFGEDDTVTLSIDVEG----PATAYSGDLISSDELVQ 110
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD N + I+ L+ Q L A A GK+HAK
Sbjct: 111 P-------ADEN-------VPIIDLKDDQRLEAEADAVLDRGKDHAKHQ 145
>gi|161899303|ref|XP_001712878.1| DNA-directed RNA polymerase II third largest subunit [Bigelowiella
natans]
gi|75756372|gb|ABA27266.1| DNA-directed RNA polymerase II third largest subunit [Bigelowiella
natans]
Length = 291
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 15/159 (9%)
Query: 29 SVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC 88
S ++++ + T+A D + + N++ +DEFIA RIGLIPL S+ + + + ++
Sbjct: 27 SFTHAIKNIVENSIITLAADTIMIFENTSNFNDEFIAHRIGLIPLISNTLYEACNWEKNP 86
Query: 89 TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA--RVVPVTSRNRDA--DMNEYGE 144
V F ++ C ++ + V+T D + RV P+ D N++
Sbjct: 87 KIV---------FDINKFCKNNSSCFVSTKDYRCNTFRNRVTPIGYSYYDKINQENKFNL 137
Query: 145 TD--DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 181
+ ILI+KL++ Q L ++ KKG G +H KW G
Sbjct: 138 VNYSHILILKLKQSQVLSMKITLKKGKGSDHTKWCSNYG 176
>gi|170579941|ref|XP_001895048.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Brugia malayi]
gi|158598143|gb|EDP36103.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Brugia malayi]
Length = 339
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 86/165 (52%), Gaps = 11/165 (6%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
++F + E +AN++RR+ IAE PT+AI+ V L N++++ DE ++ R GL+P+ +D
Sbjct: 67 LEFDLVGVEAPIANAIRRILIAELPTLAIEKVYLYQNTSIIPDEVLSHRFGLLPIKADPR 126
Query: 79 VDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK---STDARVVPVTSRNR 135
+ ++ +R + +CS E D TR++ ++K S + + + +
Sbjct: 127 LFKMPLTRVIGIDESGVDCSEE------PAGDPTRNLIF-EIKVNCSRNPNALKTATNPK 179
Query: 136 DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ N + ++ + + Q L + KG G++HAK++P A
Sbjct: 180 EIYENAFVYSNSFKWIPI-GDQSTSLPCHCLKGLGRDHAKFSPVA 223
>gi|448440158|ref|ZP_21588406.1| DNA-directed RNA polymerase subunit D [Halorubrum saccharovorum DSM
1137]
gi|445690675|gb|ELZ42885.1| DNA-directed RNA polymerase subunit D [Halorubrum saccharovorum DSM
1137]
Length = 250
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 39/153 (25%)
Query: 29 SVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSD----EVVDRILY 84
+ AN +RR IA+ PT +ID V+ NS+V+ DE I R+GL+PLT+ E+ D +
Sbjct: 28 AFANGIRRAMIADVPTFSIDTVRFVENSSVMFDEMIGLRLGLVPLTTPLDDFEIGDEVTL 87
Query: 85 SRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGE 144
+ D + ++ D++C D V AD
Sbjct: 88 ALDVEG------PATAYSGDIECAD---PLVEVAD------------------------- 113
Query: 145 TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
D+I I++L++GQ L A A GKEHAK
Sbjct: 114 -DNIPIIELKEGQRLEFEADAVLDTGKEHAKHQ 145
>gi|448368976|ref|ZP_21555743.1| DNA-directed RNA polymerase subunit D [Natrialba aegyptia DSM
13077]
gi|445651519|gb|ELZ04427.1| DNA-directed RNA polymerase subunit D [Natrialba aegyptia DSM
13077]
Length = 249
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 30/169 (17%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + D + +F V + AN +RR +A+ PTMAID V+ NS+V+ DE +A R+
Sbjct: 7 VEFVEREDRDARFLVRGITPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PL++ +F + +V ++DV+ + DL S+D V
Sbjct: 67 GLVPLST------------PPEGEFGEDDTVTLSIDVEG----PATAYSGDLISSDELVQ 110
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD N + I+ L+ Q L A A GK+HAK
Sbjct: 111 P-------ADEN-------VPIIDLKDDQRLEAEADAVLDRGKDHAKHQ 145
>gi|297618745|ref|YP_003706850.1| RNA polymerase insert [Methanococcus voltae A3]
gi|297377722|gb|ADI35877.1| RNA polymerase insert [Methanococcus voltae A3]
Length = 188
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 50/171 (29%)
Query: 15 TDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPL- 73
T E + +VE LS +++LRR+ I+E PT AI+ V N++ + DE +A R+G++P+
Sbjct: 8 TGEIITMKVE-APLSFSSALRRIMISELPTYAIENVFFYENTSSMYDEVLAHRLGMVPIK 66
Query: 74 ----TSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVP 129
+SDE++ ++ S++ C V ++DL S
Sbjct: 67 GKPVSSDELITFVV-SKEGPCT-----------------------VYSSDLNS------- 95
Query: 130 VTSRNRDADMNEYGET--DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
E GE+ D++ +VKL +GQ+L A G GK H+KW P
Sbjct: 96 -----------EVGESAFDNVPLVKLAEGQKLEAECEALVGTGKIHSKWQP 135
>gi|448739234|ref|ZP_21721249.1| DNA-directed RNA polymerase subunit D [Halococcus thailandensis JCM
13552]
gi|445799829|gb|EMA50198.1| DNA-directed RNA polymerase subunit D [Halococcus thailandensis JCM
13552]
Length = 248
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 75/169 (44%), Gaps = 31/169 (18%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V D + +F V + AN +RR IA+ PT++ID V++ NS+V+ DE I R+
Sbjct: 7 VEFVDRDERAARFLVRGITPAFANGIRRAMIADVPTLSIDTVRVVENSSVMFDEQIGHRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
G++PL +F SV LDV D + DL+S D+ V
Sbjct: 67 GMVPLA-------------APPDEFEMGESVTLGLDVSGPD----TAYSGDLQSMDSMVE 109
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P A+ N + I++L+ Q L + A A GK HAK
Sbjct: 110 P-------AEQN-------VPIIELKDDQRLEIEADAVLDTGKSHAKHQ 144
>gi|222480231|ref|YP_002566468.1| RNA polymerase insert [Halorubrum lacusprofundi ATCC 49239]
gi|222453133|gb|ACM57398.1| RNA polymerase insert [Halorubrum lacusprofundi ATCC 49239]
Length = 250
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 68/149 (45%), Gaps = 31/149 (20%)
Query: 29 SVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC 88
+ AN +RR IA+ PT +ID V+ NS+V+ DE I R+GLIPL +
Sbjct: 28 AFANGIRRAMIADVPTFSIDTVRFVENSSVMFDEMIGLRLGLIPLKT------------- 74
Query: 89 TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDI 148
DF V LDV+ + D++S D +V V D+I
Sbjct: 75 PLDDFEVGDEVTLALDVEG----PATAYSGDIESADP-LVEVAD-------------DNI 116
Query: 149 LIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
I++L++GQ L A A GKEHAK
Sbjct: 117 PIIELKEGQRLEFEADAVLDTGKEHAKHQ 145
>gi|448303016|ref|ZP_21492966.1| DNA-directed RNA polymerase subunit D [Natronorubrum sulfidifaciens
JCM 14089]
gi|445594023|gb|ELY48190.1| DNA-directed RNA polymerase subunit D [Natronorubrum sulfidifaciens
JCM 14089]
Length = 249
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 75/169 (44%), Gaps = 30/169 (17%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + D +F V + AN LRR +A+ PT+AID V+ NS+V+ DE +A R+
Sbjct: 7 VEFVEHEDRYARFLVRGVTPAFANGLRRAMLADVPTLAIDTVRFIENSSVMFDEQLALRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GL+PLT+ +F +V ++DV+ + DL S+D V
Sbjct: 67 GLVPLTT------------PPEAEFAEGDTVTLSIDVEG----PATAYSGDLVSSDDLVQ 110
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P AD N + I+ L+ Q L A A GK HAK
Sbjct: 111 P-------ADEN-------VPIIDLKDDQRLEAEADAVFNRGKNHAKHQ 145
>gi|409722495|ref|ZP_11269943.1| DNA-directed RNA polymerase subunit D [Halococcus hamelinensis
100A6]
gi|448724486|ref|ZP_21706993.1| DNA-directed RNA polymerase subunit D [Halococcus hamelinensis
100A6]
gi|445785803|gb|EMA36589.1| DNA-directed RNA polymerase subunit D [Halococcus hamelinensis
100A6]
Length = 249
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 31/169 (18%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V D+ + +F V + AN +RR +A+ PT++ID V++ NS+V+ DE I R+
Sbjct: 8 VEFIDVDEREARFLVRGITPAFANGIRRAMVADVPTLSIDTVRVIENSSVMFDEQIGHRL 67
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
G++PL+ +F SV LDV + DL+S D+ V
Sbjct: 68 GMVPLS-------------APPDEFEVGESVTLALDVSG----PETAYSGDLQSADSMVE 110
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P A+ N + I+ L++ Q L + A A GK HAK
Sbjct: 111 P-------AEQN-------VPIIDLKEDQRLEVEAEAVLDSGKTHAKHQ 145
>gi|349806155|gb|AEQ18550.1| putative polymerase i polypeptide subunit [Hymenochirus curtipes]
Length = 159
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 61/99 (61%), Gaps = 3/99 (3%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
+ I ++ + ++F + + +VAN+ RR+ +AE PT+A++ V + N++++ DE +A R+
Sbjct: 40 IDIVNMEGDTLEFDMVGIDAAVANTFRRILLAEVPTVAVEKVLVYNNTSIIQDEILAHRL 99
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKC 107
GLIP+ +D R+ R+ D +++F L+VKC
Sbjct: 100 GLIPIRADP---RLFEFRNTDEGDGTEIDTLQFELNVKC 135
>gi|448465603|ref|ZP_21598869.1| DNA-directed RNA polymerase subunit D [Halorubrum kocurii JCM
14978]
gi|445814935|gb|EMA64883.1| DNA-directed RNA polymerase subunit D [Halorubrum kocurii JCM
14978]
Length = 250
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 31/149 (20%)
Query: 29 SVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC 88
+ AN +RR IA+ PT +ID V+ NS+V+ DE I R+GLIPL +
Sbjct: 28 AFANGIRRAMIADVPTFSIDTVRFVENSSVMFDEMIGLRLGLIPLKT------------- 74
Query: 89 TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDI 148
DF V LDV+ + D++S+D +V V D++
Sbjct: 75 PLDDFEVGDEVTLALDVEG----PATAYSGDIESSDP-LVEVAD-------------DNV 116
Query: 149 LIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
I++L++GQ L A A GKEHAK
Sbjct: 117 PIIELKEGQRLEFEADAVLDTGKEHAKHQ 145
>gi|448712003|ref|ZP_21701546.1| DNA-directed RNA polymerase subunit D [Halobiforma nitratireducens
JCM 10879]
gi|445791088|gb|EMA41737.1| DNA-directed RNA polymerase subunit D [Halobiforma nitratireducens
JCM 10879]
Length = 249
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 30/147 (20%)
Query: 31 ANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTC 90
AN +RR IA+ PTMAID V+ NS+V+ DE +A R+GL+PLT+
Sbjct: 29 ANGIRRAMIADVPTMAIDTVRFIENSSVMFDEQLALRLGLVPLTT------------PPE 76
Query: 91 VDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILI 150
+F + +V ++DV+ + DL S + V P AD N + I
Sbjct: 77 DEFVEDDTVTLSIDVEG----PATAYSGDLVSEEDLVQP-------ADEN-------VPI 118
Query: 151 VKLRKGQELRLRAYAKKGFGKEHAKWN 177
++L+ Q L A A +GK+HAK
Sbjct: 119 IELKDDQRLEAEADAVLDYGKDHAKHQ 145
>gi|430813139|emb|CCJ29483.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 578
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 25/187 (13%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV 78
++F + + S+ N+ RR+ IAE PT+AI++V + N++++ DE +A R+GLIP+ ++
Sbjct: 1 MEFDLIGIDCSIVNAFRRILIAEIPTIAIEYVFVNNNTSIIQDEILAQRLGLIPIKANPD 60
Query: 79 VDRILYSRDCTCVDFCSEC---------------SVEFTLDVKCVD---------DQTRH 114
S F +V +L V C D +
Sbjct: 61 FFTWFTSNYFPIFFFILNIKEPDANQEPRPTDYDTVVLSLKVACTKNPKASENERDPEKL 120
Query: 115 VTTADLKSTDARVVPVTSRNRDADMNEYGETDD-ILIVKLRKGQELRLRAYAKKGFGKEH 173
+++ S D + P + + D ILI KLR GQE+ + + G G++H
Sbjct: 121 YINSNVYSGDIQWQPAGRQIELFKDDPIKAVHDKILIAKLRPGQEIDVTMHCILGIGQDH 180
Query: 174 AKWNPTA 180
AK++P +
Sbjct: 181 AKFSPVS 187
>gi|304274344|gb|ADM18919.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
gi|304274346|gb|ADM18920.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
gi|304274358|gb|ADM18926.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
Length = 171
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ N V + L+ ++F + + SVAN++RR+ IAE PT+AI+ V + N++++ DE
Sbjct: 14 FCNHLKVAVNSLSSAAIEFDLVGVDASVANAIRRIVIAEVPTVAIETVYVWNNTSIIQDE 73
Query: 63 FIASRIGLIPLTSD 76
+A R+GLIPL D
Sbjct: 74 VLAQRLGLIPLAID 87
>gi|448727623|ref|ZP_21709972.1| DNA-directed RNA polymerase subunit D [Halococcus morrhuae DSM
1307]
gi|445789609|gb|EMA40288.1| DNA-directed RNA polymerase subunit D [Halococcus morrhuae DSM
1307]
Length = 248
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 31/169 (18%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V D + +F V + AN +RR +A+ PT++ID V++ NS+V+ DE I R+
Sbjct: 7 VEFVDHDERAARFLVRGITPAFANGIRRAMVADVPTLSIDTVRVVENSSVMFDEQIGHRL 66
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
G++PL + +F SV LDV D + DL+S D+ V
Sbjct: 67 GMVPLAT-------------PPDEFEMGESVTLGLDVSGPD----TAYSGDLQSMDSMVE 109
Query: 129 PVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
P A+ N + I++L+ Q L + A A GK HAK
Sbjct: 110 P-------AEQN-------VPIIELKDDQRLEVEADAVLDTGKSHAKHQ 144
>gi|257053585|ref|YP_003131418.1| RNA polymerase insert [Halorhabdus utahensis DSM 12940]
gi|256692348|gb|ACV12685.1| RNA polymerase insert [Halorhabdus utahensis DSM 12940]
Length = 247
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 31/158 (19%)
Query: 20 KFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVV 79
+F V + AN +RR IA+ PT +ID V++ NS+V+ DE I R+GL+PLT+
Sbjct: 17 RFLVRGVTPAFANGVRRAMIADVPTFSIDNVRVIENSSVMFDEQIGLRLGLVPLTT---- 72
Query: 80 DRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADM 139
+F V LDV+ D + DL D V P
Sbjct: 73 ---------PVGEFEIGDEVTLALDVQGPD----TAYSGDLVGNDEMVEPAEP------- 112
Query: 140 NEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
D+ I++L+ Q L L A A G+EHAK
Sbjct: 113 -------DVPIIELKDDQRLELEADAVLDKGREHAKHQ 143
>gi|304274352|gb|ADM18923.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
gi|304274354|gb|ADM18924.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
gi|304274356|gb|ADM18925.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
Length = 171
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ N V + L+ ++F + + SVAN++RR+ IAE PT+AI+ V + N++++ DE
Sbjct: 14 FRNHLKVAVNSLSSAAIEFDLVGVDASVANAIRRIVIAEVPTVAIETVYVWNNTSIIQDE 73
Query: 63 FIASRIGLIPLTSD 76
+A R+GLIPL D
Sbjct: 74 VLAQRLGLIPLAID 87
>gi|304274360|gb|ADM18927.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
Length = 171
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ N V + L+ ++F + + SVAN++RR+ IAE PT+AI+ V + N++++ DE
Sbjct: 14 FRNHLKVAVNSLSSAAIEFDLVGVDASVANAIRRIVIAEVPTVAIETVYVWNNTSIIQDE 73
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKC 107
+A R+GLIPL D I D D +V F L +C
Sbjct: 74 VLAQRLGLIPLAIDPRKLEIKQDADEAPTDL---NTVVFGLVARC 115
>gi|304274362|gb|ADM18928.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
Length = 171
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ N V + L+ ++F + + SVAN++RR+ IAE PT+AI+ V + N++++ DE
Sbjct: 14 FRNHLKVAVNSLSSAAIEFDLVGVDASVANAIRRIVIAEVPTVAIETVYVWNNTSIIQDE 73
Query: 63 FIASRIGLIPLTSD 76
+A R+GLIPL D
Sbjct: 74 VLAQRLGLIPLAID 87
>gi|304274348|gb|ADM18921.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
gi|304274350|gb|ADM18922.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
Length = 171
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ N V + L+ ++F + + SVAN++RR+ IAE PT+AI+ V + N++++ DE
Sbjct: 14 FRNHLKVAVNSLSSGAIEFDLVGVDASVANAIRRIVIAEVPTVAIETVYVWNNTSIIQDE 73
Query: 63 FIASRIGLIPLTSD 76
+A R+GLIPL D
Sbjct: 74 VLAQRLGLIPLAID 87
>gi|335433578|ref|ZP_08558398.1| DNA-directed RNA polymerase subunit D [Halorhabdus tiamatea SARL4B]
gi|334898584|gb|EGM36688.1| DNA-directed RNA polymerase subunit D [Halorhabdus tiamatea SARL4B]
Length = 247
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 69/158 (43%), Gaps = 31/158 (19%)
Query: 20 KFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVV 79
+F V + AN +RR +A+ PT +ID V++ NS+V+ DE I R+GL+PLT+
Sbjct: 17 RFLVRGVTPAFANGVRRAMVADVPTFSIDTVRVIENSSVMFDEQIGLRLGLVPLTT---- 72
Query: 80 DRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADM 139
+F V LDV+ D + DL D V P
Sbjct: 73 ---------PVGEFEIGEEVTLALDVEGPD----TAYSGDLVGNDEMVGPAEP------- 112
Query: 140 NEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
D+ I++L+ Q L L A A G+EHAK
Sbjct: 113 -------DVPIIELKDDQRLELEADAVLDTGREHAKHQ 143
>gi|291334097|gb|ADD93769.1| putative RNA polymerase Rpb3/Rpb11 dimerisation domain protein
[uncultured marine bacterium MedDCM-OCT-S05-C222]
Length = 310
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 35/185 (18%)
Query: 19 VKFQVEDTELSVANSLRRVFIAETPTMAIDWV------------QLEANSTVLSDEFIAS 66
++ + +T+ + N++RR IA+ P +AID V ++ + VL DE IA
Sbjct: 15 IRIILSNTDAAQVNAVRRALIADVPKLAIDKVNFTQGVNQDNKGEILESVNVLPDEVIAH 74
Query: 67 RIGLIPLTSDEVVDRILYSRDC-TCVDF------CSECSVEFTLDVKC----VDDQTRHV 115
R+ +IP+ + + +++ DC C D C C V + + + ++ R V
Sbjct: 75 RLAMIPIPT-HPDEGMMHPDDCPNCKDLAEESKGCMTCQVLYHIRKEGPSEDSEETVRTV 133
Query: 116 TTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
DL + ++ + RD E I + L KGQ L L A+A G G++H+K
Sbjct: 134 YAGDLTNISDQMFDI----RD-------EHKRIPLTVLSKGQFLELYAFATLGRGRQHSK 182
Query: 176 WNPTA 180
W+P A
Sbjct: 183 WSPVA 187
>gi|55376999|ref|YP_134849.1| DNA-directed RNA polymerase subunit D [Haloarcula marismortui ATCC
43049]
gi|344211110|ref|YP_004795430.1| DNA-directed RNA polymerase subunit D [Haloarcula hispanica ATCC
33960]
gi|448640850|ref|ZP_21677637.1| DNA-directed RNA polymerase subunit D [Haloarcula sinaiiensis ATCC
33800]
gi|448651240|ref|ZP_21680309.1| DNA-directed RNA polymerase subunit D [Haloarcula californiae ATCC
33799]
gi|448667520|ref|ZP_21686020.1| DNA-directed RNA polymerase subunit D [Haloarcula amylolytica JCM
13557]
gi|448678705|ref|ZP_21689712.1| DNA-directed RNA polymerase subunit D [Haloarcula argentinensis DSM
12282]
gi|1350858|sp|Q00813.1|RPOD_HALMA RecName: Full=DNA-directed RNA polymerase subunit D
gi|148773|gb|AAA73212.1| ribosomal protein HmaRp-alpha subunit [Haloarcula marismortui]
gi|55229724|gb|AAV45143.1| DNA-directed RNA polymerase subunit D [Haloarcula marismortui ATCC
43049]
gi|343782465|gb|AEM56442.1| DNA-directed RNA polymerase subunit D [Haloarcula hispanica ATCC
33960]
gi|445761375|gb|EMA12623.1| DNA-directed RNA polymerase subunit D [Haloarcula sinaiiensis ATCC
33800]
gi|445770088|gb|EMA21156.1| DNA-directed RNA polymerase subunit D [Haloarcula amylolytica JCM
13557]
gi|445770767|gb|EMA21825.1| DNA-directed RNA polymerase subunit D [Haloarcula californiae ATCC
33799]
gi|445772692|gb|EMA23737.1| DNA-directed RNA polymerase subunit D [Haloarcula argentinensis DSM
12282]
Length = 259
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 31/147 (21%)
Query: 29 SVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC 88
+ AN +RR +A+ PT +ID V++ N++V+ +E I R+GL+PLT+D
Sbjct: 27 AFANGIRRAMVADVPTFSIDTVRVIENTSVMFNEQIGLRLGLVPLTTD------------ 74
Query: 89 TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDI 148
DF E E TL + D ++DL S+D V AD D+I
Sbjct: 75 -LDDF--EIGDEVTLSLSV--DGPSTAYSSDLVSSDPMV-------EAAD-------DNI 115
Query: 149 LIVKLRKGQELRLRAYAKKGFGKEHAK 175
I+ L++GQ L + A A G+EHAK
Sbjct: 116 PIIDLKEGQRLEVEADAVLDTGREHAK 142
>gi|424813874|ref|ZP_18239052.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Candidatus Nanosalina sp. J07AB43]
gi|339757490|gb|EGQ42747.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Candidatus Nanosalina sp. J07AB43]
Length = 190
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 34/169 (20%)
Query: 9 VHITDLTDEN--VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
+ + +L +EN +K ++ED + AN+LRR +A+ PT+A+ +Q+ N + L DE +A+
Sbjct: 1 MKVEELEEENGVLKVELEDANNAEANTLRRTMMAKVPTLAVKELQVTKNGSGLFDEVLAN 60
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+G +P T + + + D + E + V D+++ +
Sbjct: 61 RLGQVPFT----IPQGMEEEDEVSIAVKQEGPGD--------------VLAQDIQTGNEE 102
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
PV D ++V L++ QEL A G GK+HAK
Sbjct: 103 SEPVNP--------------DTVLVTLKEDQELEFEGTAVLGKGKDHAK 137
>gi|448689118|ref|ZP_21694855.1| DNA-directed RNA polymerase subunit D [Haloarcula japonica DSM
6131]
gi|445778988|gb|EMA29930.1| DNA-directed RNA polymerase subunit D [Haloarcula japonica DSM
6131]
Length = 259
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 31/147 (21%)
Query: 29 SVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC 88
+ AN +RR +A+ PT +ID V++ N++V+ +E I R+GL+PLT+D
Sbjct: 27 AFANGIRRAMVADVPTFSIDTVRVIENTSVMFNEQIGLRLGLVPLTTD------------ 74
Query: 89 TCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDI 148
DF E E TL + D ++DL S+D V AD D+I
Sbjct: 75 -LDDF--EIGDEVTLSLSV--DGPATAYSSDLVSSDPMV-------EAAD-------DNI 115
Query: 149 LIVKLRKGQELRLRAYAKKGFGKEHAK 175
I+ L++GQ L + A A G+EHAK
Sbjct: 116 PIIDLKEGQRLEVEADAVLDTGREHAK 142
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,707,543,616
Number of Sequences: 23463169
Number of extensions: 99928781
Number of successful extensions: 231737
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 229477
Number of HSP's gapped (non-prelim): 1201
length of query: 181
length of database: 8,064,228,071
effective HSP length: 133
effective length of query: 48
effective length of database: 9,238,593,890
effective search space: 443452506720
effective search space used: 443452506720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 72 (32.3 bits)