Your job contains 1 sequence.
>psy12829
MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS
DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL
KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
G
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy12829
(181 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0026373 - symbol:RpII33 "RNA polymerase II 33kD su... 786 3.8e-78 1
UNIPROTKB|Q3T0Q3 - symbol:POLR2C "DNA-directed RNA polyme... 755 7.3e-75 1
UNIPROTKB|E2RQ42 - symbol:POLR2C "Uncharacterized protein... 755 7.3e-75 1
RGD|1306935 - symbol:Polr2c "polymerase (RNA) II (DNA dir... 751 1.9e-74 1
UNIPROTKB|D4A8A8 - symbol:Polr2c "Protein Polr2c" species... 751 1.9e-74 1
UNIPROTKB|I3LCH3 - symbol:POLR2C "Uncharacterized protein... 750 2.5e-74 1
UNIPROTKB|P19387 - symbol:POLR2C "DNA-directed RNA polyme... 749 3.1e-74 1
UNIPROTKB|E1BV97 - symbol:POLR2C "Uncharacterized protein... 746 6.5e-74 1
ZFIN|ZDB-GENE-030131-6609 - symbol:polr2c "polymerase (RN... 745 8.4e-74 1
MGI|MGI:109299 - symbol:Polr2c "polymerase (RNA) II (DNA ... 727 6.7e-72 1
WB|WBGene00007971 - symbol:rpb-3 species:6239 "Caenorhabd... 562 2.1e-54 1
DICTYBASE|DDB_G0292244 - symbol:rpb3 "RNA polymerase II c... 467 2.4e-44 1
TAIR|locus:2047168 - symbol:NRPB3 species:3702 "Arabidops... 459 1.7e-43 1
TAIR|locus:2047198 - symbol:NRPE3B species:3702 "Arabidop... 438 2.8e-41 1
SGD|S000001283 - symbol:RPB3 "RNA polymerase II third lar... 386 9.2e-36 1
CGD|CAL0002919 - symbol:orf19.1248 species:5476 "Candida ... 379 5.1e-35 1
UNIPROTKB|Q5A462 - symbol:RPB3 "Putative uncharacterized ... 379 5.1e-35 1
ASPGD|ASPL0000005413 - symbol:AN6252 species:162425 "Emer... 359 6.7e-33 1
POMBASE|SPCC1442.10c - symbol:rpb3 "RNA polymerase II sub... 339 8.8e-31 1
TAIR|locus:2036494 - symbol:RPAC43 "RNA polymerase I subu... 165 1.2e-21 2
TAIR|locus:2025855 - symbol:ATRPAC42 species:3702 "Arabid... 164 2.8e-21 2
POMBASE|SPBC1289.07c - symbol:rpc40 "DNA-directed RNA pol... 231 2.5e-19 1
WB|WBGene00019275 - symbol:rpac-40 species:6239 "Caenorha... 147 4.1e-19 2
CGD|CAL0005950 - symbol:RPC40 species:5476 "Candida albic... 225 2.0e-18 1
DICTYBASE|DDB_G0282339 - symbol:rpa5 "RNA polymerase III ... 221 3.8e-18 1
MGI|MGI:103288 - symbol:Polr1c "polymerase (RNA) I polype... 216 1.5e-17 1
UNIPROTKB|Q5RJK9 - symbol:Polr1c "Protein Polr1c" species... 215 2.0e-17 1
SGD|S000006314 - symbol:RPC40 "RNA polymerase subunit AC4... 213 2.7e-17 1
UNIPROTKB|F1RRJ4 - symbol:POLR1C "Uncharacterized protein... 214 2.8e-17 1
ZFIN|ZDB-GENE-040426-1495 - symbol:polr1c "polymerase (RN... 213 4.3e-17 1
UNIPROTKB|E2RH57 - symbol:POLR1C "Uncharacterized protein... 212 4.4e-17 1
ASPGD|ASPL0000043748 - symbol:AN2415 species:162425 "Emer... 143 4.5e-17 2
UNIPROTKB|Q32L22 - symbol:POLR1C "DNA-directed RNA polyme... 211 5.7e-17 1
UNIPROTKB|O15160 - symbol:POLR1C "DNA-directed RNA polyme... 211 5.7e-17 1
UNIPROTKB|E1C548 - symbol:POLR1C "Uncharacterized protein... 201 8.1e-16 1
FB|FBgn0031657 - symbol:CG3756 species:7227 "Drosophila m... 197 1.9e-15 1
UNIPROTKB|E7EQB9 - symbol:POLR1C "DNA-directed RNA polyme... 184 3.2e-14 1
UNIPROTKB|G4MQN0 - symbol:MGG_09284 "DNA-directed RNA pol... 183 1.1e-13 1
UNIPROTKB|H3BRR2 - symbol:POLR2C "DNA-directed RNA polyme... 176 1.6e-13 1
UNIPROTKB|F1LXY3 - symbol:Polr1c "Protein Polr1c" species... 146 4.6e-10 1
UNIPROTKB|D6RDJ3 - symbol:POLR1C "DNA-directed RNA polyme... 143 5.2e-10 1
UNIPROTKB|H0Y723 - symbol:POLR1C "DNA-directed RNA polyme... 139 1.4e-09 1
UNIPROTKB|Q57648 - symbol:rpoD "DNA-directed RNA polymera... 118 4.5e-06 1
>FB|FBgn0026373 [details] [associations]
symbol:RpII33 "RNA polymerase II 33kD subunit" species:7227
"Drosophila melanogaster" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISS;NAS] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS;IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0034605 "cellular response to heat" evidence=IEP] [GO:0005634
"nucleus" evidence=IDA] [GO:0005703 "polytene chromosome puff"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005875
"microtubule associated complex" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IDA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
GO:GO:0005737 GO:GO:0005875 GO:GO:0034605 EMBL:AE014134
GO:GO:0003677 GO:GO:0006366 GO:GO:0005703 GO:GO:0003899 KO:K03011
GO:GO:0005665 eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 GeneTree:ENSGT00640000091532 OMA:NQPTVKI
EMBL:AY060644 EMBL:AJ133650 RefSeq:NP_477419.1 UniGene:Dm.3412
HSSP:P16370 SMR:O97183 IntAct:O97183 MINT:MINT-801436 STRING:O97183
EnsemblMetazoa:FBtr0080544 GeneID:34796 KEGG:dme:Dmel_CG7885
UCSC:CG7885-RA CTD:34796 FlyBase:FBgn0026373 InParanoid:O97183
OrthoDB:EOG441NT4 GenomeRNAi:34796 NextBio:790263 Uniprot:O97183
Length = 275
Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
Identities = 148/182 (81%), Positives = 170/182 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQPSV IT+LTD+NVKF +EDTELSVANSLRRVFIAETPT+AIDWVQLEANSTVLS
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLS 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A RIGLIPL SD+VV+R+ Y+RDC C+DFC ECSVEFTLDVKC ++QTRHVTTADL
Sbjct: 61 DEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTRHVTTADL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
KS++A+V+PVTSRN+ + NEYGE+ D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPT
Sbjct: 121 KSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPT 180
Query: 180 AG 181
AG
Sbjct: 181 AG 182
>UNIPROTKB|Q3T0Q3 [details] [associations]
symbol:POLR2C "DNA-directed RNA polymerase II subunit RPB3"
species:9913 "Bos taurus" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0015630 "microtubule
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0005737 GO:GO:0015630 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 KO:K03011 GO:GO:0005665 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 EMBL:BT030680 EMBL:BC102301 IPI:IPI00690694
RefSeq:NP_001029384.1 UniGene:Bt.49139 ProteinModelPortal:Q3T0Q3
STRING:Q3T0Q3 PRIDE:Q3T0Q3 Ensembl:ENSBTAT00000002420 GeneID:504452
KEGG:bta:504452 CTD:5432 GeneTree:ENSGT00640000091532
HOVERGEN:HBG000897 InParanoid:Q3T0Q3 OMA:NQPTVKI OrthoDB:EOG437RFC
NextBio:20866665 Uniprot:Q3T0Q3
Length = 275
Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
Identities = 140/181 (77%), Positives = 162/181 (89%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>UNIPROTKB|E2RQ42 [details] [associations]
symbol:POLR2C "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015630 "microtubule cytoskeleton"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0005737 GO:GO:0015630
GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 KO:K03011 GO:GO:0005665
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 CTD:5432
GeneTree:ENSGT00640000091532 OMA:NQPTVKI EMBL:AAEX03001573
EMBL:AAEX03001572 RefSeq:XP_535283.2 ProteinModelPortal:E2RQ42
PRIDE:E2RQ42 Ensembl:ENSCAFT00000013863 GeneID:478109
KEGG:cfa:478109 NextBio:20853480 Uniprot:E2RQ42
Length = 275
Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
Identities = 140/181 (77%), Positives = 162/181 (89%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>RGD|1306935 [details] [associations]
symbol:Polr2c "polymerase (RNA) II (DNA directed) polypeptide C"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0015630 "microtubule cytoskeleton" evidence=IEA;ISO]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 RGD:1306935 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
KO:K03011 eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 HOGENOM:HOG000230844 CTD:5432
GeneTree:ENSGT00640000091532 HOVERGEN:HBG000897 OMA:NQPTVKI
EMBL:CH474006 EMBL:BC089905 IPI:IPI00476352 RefSeq:NP_001012491.1
UniGene:Rn.139399 SMR:Q5EB90 STRING:Q5EB90
Ensembl:ENSRNOT00000021639 GeneID:361365 KEGG:rno:361365
UCSC:RGD:1306935 NextBio:676047 Genevestigator:Q5EB90
Uniprot:Q5EB90
Length = 275
Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
Identities = 139/181 (76%), Positives = 162/181 (89%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LT+ENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>UNIPROTKB|D4A8A8 [details] [associations]
symbol:Polr2c "Protein Polr2c" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 RGD:1306935 GO:GO:0005737 GO:GO:0015630 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 OrthoDB:EOG437RFC IPI:IPI00779676
Ensembl:ENSRNOT00000061255 ArrayExpress:D4A8A8 Uniprot:D4A8A8
Length = 330
Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
Identities = 139/181 (76%), Positives = 162/181 (89%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LT+ENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>UNIPROTKB|I3LCH3 [details] [associations]
symbol:POLR2C "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0005737 GO:GO:0015630 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 KO:K03011 GO:GO:0005665
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
GeneTree:ENSGT00640000091532 OMA:NQPTVKI EMBL:FP326735
RefSeq:XP_003355849.1 Ensembl:ENSSSCT00000024584 GeneID:100620737
KEGG:ssc:100620737 Uniprot:I3LCH3
Length = 275
Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
Identities = 139/181 (76%), Positives = 162/181 (89%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSRNRD D ++Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPSDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>UNIPROTKB|P19387 [details] [associations]
symbol:POLR2C "DNA-directed RNA polymerase II subunit RPB3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IDA;TAS] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0015630 "microtubule
cytoskeleton" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0005737 Reactome:REACT_116125
GO:GO:0016032 GO:GO:0015630 GO:GO:0003677 Reactome:REACT_1675
GO:GO:0006368 GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788
EMBL:AC004382 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
Reactome:REACT_1892 GO:GO:0003899 KO:K03011 GO:GO:0005665
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
CTD:5432 HOVERGEN:HBG000897 OMA:NQPTVKI OrthoDB:EOG437RFC
EMBL:J05448 EMBL:AF008443 EMBL:AJ224143 EMBL:AJ224144 EMBL:BC000409
EMBL:BC003159 EMBL:BC028157 IPI:IPI00018288 PIR:A36264
RefSeq:NP_116558.1 UniGene:Hs.79402 ProteinModelPortal:P19387
SMR:P19387 DIP:DIP-32911N IntAct:P19387 MINT:MINT-270053
STRING:P19387 PhosphoSite:P19387 DMDM:3915850 PaxDb:P19387
PeptideAtlas:P19387 PRIDE:P19387 DNASU:5432 Ensembl:ENST00000219252
GeneID:5432 KEGG:hsa:5432 UCSC:uc002elt.1 GeneCards:GC16P057496
HGNC:HGNC:9189 HPA:HPA040919 HPA:HPA041826 MIM:180663
neXtProt:NX_P19387 PharmGKB:PA33509 InParanoid:P19387
PhylomeDB:P19387 GenomeRNAi:5432 NextBio:21017 ArrayExpress:P19387
Bgee:P19387 CleanEx:HS_POLR2C Genevestigator:P19387
GermOnline:ENSG00000102978 Uniprot:P19387
Length = 275
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 139/181 (76%), Positives = 161/181 (88%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPL SD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>UNIPROTKB|E1BV97 [details] [associations]
symbol:POLR2C "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0046983
"protein dimerization activity" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0015630
"microtubule cytoskeleton" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0005737 GO:GO:0015630 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 KO:K03011 GO:GO:0005665
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 CTD:5432
GeneTree:ENSGT00640000091532 OMA:NQPTVKI EMBL:AADN02065759
IPI:IPI00579063 RefSeq:XP_414001.1 UniGene:Gga.11991 PRIDE:E1BV97
Ensembl:ENSGALT00000001768 GeneID:415635 KEGG:gga:415635
NextBio:20819207 Uniprot:E1BV97
Length = 275
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 138/181 (76%), Positives = 163/181 (90%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLTSDDIVDKMQYSRDCTCDEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S + RV+PVTSR+RD D N+Y E DDILIVKLRKGQEL+LRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNNPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>ZFIN|ZDB-GENE-030131-6609 [details] [associations]
symbol:polr2c "polymerase (RNA) II (DNA directed)
polypeptide C" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
SMART:SM00662 ZFIN:ZDB-GENE-030131-6609 GO:GO:0003677 GO:GO:0006351
EMBL:AL929309 GO:GO:0003899 KO:K03011 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 CTD:5432 GeneTree:ENSGT00640000091532
HOVERGEN:HBG000897 OMA:NQPTVKI OrthoDB:EOG437RFC EMBL:BC046047
IPI:IPI00484221 RefSeq:NP_001161428.1 UniGene:Dr.81878
STRING:Q7ZV11 Ensembl:ENSDART00000043812 GeneID:334669
KEGG:dre:334669 InParanoid:Q7ZV11 NextBio:20810502 Uniprot:Q7ZV11
Length = 275
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 135/181 (74%), Positives = 163/181 (90%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+L+DENVKF +E+T+L+VANS+RRVF++E PT+AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWVQIDANSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEF+A R+GLIPLTSD++VD++ YSRDCTC DFC ECSVE TLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFVAHRVGLIPLTSDDIVDKMQYSRDCTCDDFCPECSVELTLDVRCTEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S + RV+PVTSR+RD D N+Y E DDIL+VKLRKGQELRLRAYAKKGFGKEHAKWNPTA
Sbjct: 121 LSNNPRVIPVTSRSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>MGI|MGI:109299 [details] [associations]
symbol:Polr2c "polymerase (RNA) II (DNA directed) polypeptide
C" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 MGI:MGI:109299 GO:GO:0005737 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 HOVERGEN:HBG000897 EMBL:D83999 IPI:IPI00129026
PIR:JC6181 UniGene:Mm.292492 ProteinModelPortal:P97760 SMR:P97760
IntAct:P97760 STRING:P97760 PhosphoSite:P97760 PaxDb:P97760
PRIDE:P97760 CleanEx:MM_POLR2C Genevestigator:P97760 Uniprot:P97760
Length = 275
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 135/181 (74%), Positives = 158/181 (87%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP+V IT+LT+ENVKF +E+T+L+VANS+RRVFIAE P +AIDWVQ++ NS+VL
Sbjct: 1 MPYANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDGNSSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 121 KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAY KK GKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYVKKRSGKEHAKWNPTA 180
Query: 181 G 181
G
Sbjct: 181 G 181
>WB|WBGene00007971 [details] [associations]
symbol:rpb-3 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
SMART:SM00662 EMBL:Z80215 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0003677 GO:GO:0040011 GO:GO:0000003
GO:GO:0006351 GO:GO:0003899 KO:K03011 GO:GO:0001703 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 GeneTree:ENSGT00640000091532 OMA:NQPTVKI
PIR:T19774 RefSeq:NP_492361.2 UniGene:Cel.32712
ProteinModelPortal:Q93338 SMR:Q93338 STRING:Q93338 PaxDb:Q93338
EnsemblMetazoa:C36B1.3 GeneID:172680 KEGG:cel:CELE_C36B1.3
UCSC:C36B1.3 CTD:172680 WormBase:C36B1.3 InParanoid:Q93338
NextBio:876551 Uniprot:Q93338
Length = 282
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 108/187 (57%), Positives = 138/187 (73%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
MPYANQP++ +T+LT++ +KF + DT+LSVANSLRRVF+AE PT+AIDWVQ+E N++VL
Sbjct: 1 MPYANQPNIEVTELTNDIIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLH 60
Query: 61 DEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
DEFIA R+GLIP SD V+++ Y+RDC C +FC ECS+ F L +KC D+ T VTT L
Sbjct: 61 DEFIAHRMGLIPFISDYHVEKMQYTRDCECAEFCDECSIPFILQMKCKDEATLAVTTEHL 120
Query: 121 K---STDARVVPVTS---RNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
+ D V P R R + +E+ ++ILIVKLRKGQEL L+AY KKGFGKEHA
Sbjct: 121 MPMHNLDTTVRPACGKALRERGSTRDEFHNREEILIVKLRKGQELNLKAYVKKGFGKEHA 180
Query: 175 KWNPTAG 181
KWNPT G
Sbjct: 181 KWNPTCG 187
>DICTYBASE|DDB_G0292244 [details] [associations]
symbol:rpb3 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
dictyBase:DDB_G0292244 GenomeReviews:CM000155_GR GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 KO:K03011 EMBL:AAFI02000188
GO:GO:0005665 eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 OMA:KWQAGVA RefSeq:XP_629750.1
ProteinModelPortal:Q54DH7 STRING:Q54DH7 PRIDE:Q54DH7
EnsemblProtists:DDB0216289 GeneID:8628579 KEGG:ddi:DDB_G0292244
ProtClustDB:CLSZ2728736 Uniprot:Q54DH7
Length = 302
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 89/174 (51%), Positives = 131/174 (75%)
Query: 6 QPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIA 65
QP + I ++ ++++ F + +T++SVAN+LRRV IAE PTM ID V+ E+N++VL DEFIA
Sbjct: 11 QPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFIA 70
Query: 66 SRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDA 125
R+GLIPL SD + D+ Y+RDC+C D C +CSVE L+VKC +++ R VT++DL S ++
Sbjct: 71 HRLGLIPLVSDNI-DKFCYTRDCSCSDRCDQCSVELRLNVKCTENRPRDVTSSDLLSQNS 129
Query: 126 RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
V+PV+S+ ++ + +I IVKLR+GQE++LRA AKKG GKEHAKW+P+
Sbjct: 130 AVIPVSSQVTSSNSEQ-----EIPIVKLRRGQEIKLRAIAKKGVGKEHAKWSPS 178
>TAIR|locus:2047168 [details] [associations]
symbol:NRPB3 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0000418 "DNA-directed RNA
polymerase IV complex" evidence=IPI] [GO:0000419 "DNA-directed RNA
polymerase V complex" evidence=IPI] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IPI] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005730 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03011
EMBL:AC006920 GO:GO:0000418 GO:GO:0000419 GO:GO:0005665
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
EMBL:L34770 EMBL:AY063965 EMBL:AY096406 IPI:IPI00544466 PIR:S71176
RefSeq:NP_179145.1 UniGene:At.27427 ProteinModelPortal:Q39211
SMR:Q39211 IntAct:Q39211 STRING:Q39211 PaxDb:Q39211 PRIDE:Q39211
EnsemblPlants:AT2G15430.1 GeneID:816035 KEGG:ath:AT2G15430
TAIR:At2g15430 HOGENOM:HOG000230844 InParanoid:Q39211 OMA:KWQAGVA
PhylomeDB:Q39211 ProtClustDB:CLSN2683582 Genevestigator:Q39211
GermOnline:AT2G15430 Uniprot:Q39211
Length = 319
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 94/181 (51%), Positives = 126/181 (69%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y P + I +L D+ KF++ +T++S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 6 YQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 65
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEFTLDVKCVDDQTRHVTTAD 119
FIA R+GLIPLTS+ + + +SRDC D C CSVEF L KCV DQT VT+ D
Sbjct: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVTSRD 124
Query: 120 LKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
L S D V PV D+ +++ E I+IVKLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 125 LYSADPTVTPVDF-TIDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPA 183
Query: 180 A 180
A
Sbjct: 184 A 184
>TAIR|locus:2047198 [details] [associations]
symbol:NRPE3B species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000419 "DNA-directed RNA polymerase V complex" evidence=IPI]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IPI] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 KO:K03011 EMBL:AC006920 GO:GO:0000419 GO:GO:0005665
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 ProtClustDB:CLSN2683582 EMBL:L34771
EMBL:BT005715 EMBL:BT006072 IPI:IPI00547850 PIR:E84528 PIR:S71177
RefSeq:NP_179142.1 UniGene:At.40419 ProteinModelPortal:Q39212
SMR:Q39212 IntAct:Q39212 STRING:Q39212 PaxDb:Q39212 PRIDE:Q39212
EnsemblPlants:AT2G15400.1 GeneID:816032 KEGG:ath:AT2G15400
TAIR:At2g15400 InParanoid:Q39212 OMA:GFVYYKY PhylomeDB:Q39212
Genevestigator:Q39212 GermOnline:AT2G15400 Uniprot:Q39212
Length = 319
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 92/182 (50%), Positives = 123/182 (67%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Y P+V I +L D+ KF++ +T++S+AN+LRRV I+E PTMAI V++E NS+VL+DE
Sbjct: 6 YQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVLNDE 65
Query: 63 FIASRIGLIPLTSDEVVD-RILYS-RDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL 120
FIA R+ LIPLTS+ + R DC + C CSVEF L KCV DQT VT+ DL
Sbjct: 66 FIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDVTSRDL 125
Query: 121 KSTDARVVPV--TSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
S D V PV TS + +D +E+ I+I KLR+GQEL+L+A A+KG GK+HAKW+P
Sbjct: 126 YSADPTVTPVDFTSNSSTSDSSEH---KGIIIAKLRRGQELKLKALARKGIGKDHAKWSP 182
Query: 179 TA 180
A
Sbjct: 183 AA 184
>SGD|S000001283 [details] [associations]
symbol:RPB3 "RNA polymerase II third largest subunit B44"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=IMP] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003968
"RNA-directed RNA polymerase activity" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 SGD:S000001283 GO:GO:0046872 GO:GO:0003677
EMBL:BK006942 EMBL:Z46881 GO:GO:0006369 GO:GO:0003899
RefSeq:NP_012243.3 GeneID:854791 KEGG:sce:YIL021W KO:K03011
GO:GO:0005665 PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83 PDB:1NIK PDB:1NT9
PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO PDB:1TWA PDB:1TWC
PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y
PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I PDB:2E2J PDB:2JA5
PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT PDB:2NVX PDB:2NVY
PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM PDB:2YU9 PDB:3CQZ
PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL PDB:3GTM PDB:3GTO
PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX
PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F PDB:3K7A PDB:3M3Y
PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD PDB:3RZO PDB:3S14
PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N PDB:3S1Q PDB:3S1R
PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F
PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93
PDB:4BBR PDB:4BBS PDBsum:1I3Q PDBsum:1I50 PDBsum:1I6H PDBsum:1K83
PDBsum:1NIK PDBsum:1NT9 PDBsum:1PQV PDBsum:1R5U PDBsum:1R9S
PDBsum:1R9T PDBsum:1SFO PDBsum:1TWA PDBsum:1TWC PDBsum:1TWF
PDBsum:1TWG PDBsum:1TWH PDBsum:1WCM PDBsum:1Y1V PDBsum:1Y1W
PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63 PDBsum:2B8K PDBsum:2E2H
PDBsum:2E2I PDBsum:2E2J PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7
PDBsum:2JA8 PDBsum:2NVQ PDBsum:2NVT PDBsum:2NVX PDBsum:2NVY
PDBsum:2NVZ PDBsum:2R7Z PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM
PDBsum:2YU9 PDBsum:3CQZ PDBsum:3FKI PDBsum:3GTG PDBsum:3GTJ
PDBsum:3GTK PDBsum:3GTL PDBsum:3GTM PDBsum:3GTO PDBsum:3GTP
PDBsum:3GTQ PDBsum:3H3V PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW
PDBsum:3HOX PDBsum:3HOY PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N
PDBsum:3K1F PDBsum:3K7A PDBsum:3M3Y PDBsum:3M4O PDBsum:3PO2
PDBsum:3PO3 PDBsum:3QT1 PDBsum:3RZD PDBsum:3RZO PDBsum:3S14
PDBsum:3S15 PDBsum:3S16 PDBsum:3S17 PDBsum:3S1M PDBsum:3S1N
PDBsum:3S1Q PDBsum:3S1R PDBsum:3S2D PDBsum:3S2H PDBsum:4A3B
PDBsum:4A3C PDBsum:4A3D PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G
PDBsum:4A3I PDBsum:4A3J PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M
PDBsum:4A93 PDBsum:4BBR PDBsum:4BBS eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 GeneTree:ENSGT00640000091532 OMA:NQPTVKI
OrthoDB:EOG4DV8VZ EMBL:M27496 PIR:S49961 RefSeq:NP_012250.3
ProteinModelPortal:P16370 SMR:P16370 DIP:DIP-837N IntAct:P16370
MINT:MINT-613688 STRING:P16370 PaxDb:P16370 PeptideAtlas:P16370
EnsemblFungi:YIL021W GeneID:854799 KEGG:sce:YIL014C-A CYGD:YIL021w
EvolutionaryTrace:P16370 NextBio:977585 Genevestigator:P16370
GermOnline:YIL021W Uniprot:P16370
Length = 318
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 84/174 (48%), Positives = 113/174 (64%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V I + + +NV F + + +L++ANSLRRV IAE PT+AID V++E N+TVL+DEFIA
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S ++ +++ YSRDC C D C +CSV TL + T +V + DL
Sbjct: 66 RLGLIPLQSMDI-EQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDL----VI 120
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
V + RN + + E + +LI KLRKGQEL+L AKKG KEHAKW P A
Sbjct: 121 VSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAA 174
>CGD|CAL0002919 [details] [associations]
symbol:orf19.1248 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
CGD:CAL0002919 GO:GO:0042493 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 KO:K03011 EMBL:AACQ01000068 EMBL:AACQ01000067
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 RefSeq:XP_716500.1 RefSeq:XP_716556.1
ProteinModelPortal:Q5A462 SMR:Q5A462 STRING:Q5A462 GeneID:3641812
GeneID:3641858 KEGG:cal:CaO19.1248 KEGG:cal:CaO19.8832
Uniprot:Q5A462
Length = 318
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 80/174 (45%), Positives = 113/174 (64%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
PSV I + ++V F +++ +L+VANS+RR IAE PT+AID V+++ N++VL+DEF++
Sbjct: 9 PSVTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S E +D + YSRDCTC ++CS+CSV L C + T +V +DL+
Sbjct: 69 RLGLIPLVS-EGIDNLTYSRDCTCDNYCSKCSVTLQLIANCATESTMNVYASDLQKMSHN 127
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S+ D + + + LI KLRK QEL L AKKG KEHAKW+PTA
Sbjct: 128 ----GSKLGDPVIRD-PQARGPLICKLRKHQELSLTCIAKKGIAKEHAKWSPTA 176
>UNIPROTKB|Q5A462 [details] [associations]
symbol:RPB3 "Putative uncharacterized protein RPB3"
species:237561 "Candida albicans SC5314" [GO:0042493 "response to
drug" evidence=IMP] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
CGD:CAL0002919 GO:GO:0042493 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 KO:K03011 EMBL:AACQ01000068 EMBL:AACQ01000067
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 RefSeq:XP_716500.1 RefSeq:XP_716556.1
ProteinModelPortal:Q5A462 SMR:Q5A462 STRING:Q5A462 GeneID:3641812
GeneID:3641858 KEGG:cal:CaO19.1248 KEGG:cal:CaO19.8832
Uniprot:Q5A462
Length = 318
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 80/174 (45%), Positives = 113/174 (64%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
PSV I + ++V F +++ +L+VANS+RR IAE PT+AID V+++ N++VL+DEF++
Sbjct: 9 PSVTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S E +D + YSRDCTC ++CS+CSV L C + T +V +DL+
Sbjct: 69 RLGLIPLVS-EGIDNLTYSRDCTCDNYCSKCSVTLQLIANCATESTMNVYASDLQKMSHN 127
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S+ D + + + LI KLRK QEL L AKKG KEHAKW+PTA
Sbjct: 128 ----GSKLGDPVIRD-PQARGPLICKLRKHQELSLTCIAKKGIAKEHAKWSPTA 176
>ASPGD|ASPL0000005413 [details] [associations]
symbol:AN6252 species:162425 "Emericella nidulans"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 EMBL:AACD01000107
EMBL:BN001301 GO:GO:0003899 KO:K03011 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 OrthoDB:EOG4DV8VZ RefSeq:XP_663856.1
ProteinModelPortal:Q5AZM8 SMR:Q5AZM8 STRING:Q5AZM8
EnsemblFungi:CADANIAT00006740 GeneID:2870835 KEGG:ani:AN6252.2
OMA:EPFDYNA Uniprot:Q5AZM8
Length = 333
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 77/174 (44%), Positives = 100/174 (57%)
Query: 7 PSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIAS 66
P V + + V F++ +L+ ANSLRRV +AE PTMAID V++E NS+VL DE +A
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRVMLAEIPTMAIDIVEVEKNSSVLPDEMLAH 71
Query: 67 RIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDAR 126
R+GLIPL S + Y+RDC C D C+ CSV +L +C D+ V DL T R
Sbjct: 72 RLGLIPLDSKNCDQDVEYTRDCECEDHCARCSVTLSLHARCTSDEIMRVYARDLVITGER 131
Query: 127 VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
D + G LI KLR+GQEL++ AKKG KEH+KW PTA
Sbjct: 132 ANEWVGNPVITDPDGNGP----LICKLRRGQELKMTCIAKKGIAKEHSKWAPTA 181
>POMBASE|SPCC1442.10c [details] [associations]
symbol:rpb3 "RNA polymerase II subunit 3" species:4896
"Schizosaccharomyces pombe" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IMP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IC] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IDA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
PomBase:SPCC1442.10c GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003677 GO:GO:0006366 GO:GO:0003899
KO:K03011 GO:GO:0005665 PDB:3H0G PDBsum:3H0G eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 OMA:NQPTVKI EMBL:D15070 EMBL:D50661
EMBL:D50662 PIR:S43201 PIR:T40975 RefSeq:NP_588324.1
ProteinModelPortal:P37382 SMR:P37382 IntAct:P37382
MINT:MINT-1213878 STRING:P37382 EnsemblFungi:SPCC1442.10c.1
GeneID:2538816 KEGG:spo:SPCC1442.10c OrthoDB:EOG4DV8VZ
EvolutionaryTrace:P37382 NextBio:20799998 Uniprot:P37382
Length = 297
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 77/179 (43%), Positives = 109/179 (60%)
Query: 10 HIT--DLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASR 67
HIT +++ +V F + +T L+VANSLRRV +AE PT+AID V++ N++V+ DEF+A R
Sbjct: 6 HITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHR 65
Query: 68 IGLIPLTSDEVVDR----ILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADL--K 121
+G+IPL S + + + Y+R+C C +C +CSVE L+ KC + T + DL
Sbjct: 66 LGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARDLVVS 125
Query: 122 STDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
S + P+ AD G LI KLRK QE+ LR AKKG KEHAKW+PT+
Sbjct: 126 SNSSLGHPIL-----ADPKSRGP----LICKLRKEQEISLRCIAKKGIAKEHAKWSPTS 175
>TAIR|locus:2036494 [details] [associations]
symbol:RPAC43 "RNA polymerase I subunit 43" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0046983
"protein dimerization activity" evidence=IEA] [GO:0006626 "protein
targeting to mitochondrion" evidence=RCA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0003677
GO:GO:0006351 EMBL:AC002292 GO:GO:0003899 eggNOG:COG0202
HOGENOM:HOG000230845 KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 OMA:TVSRECL EMBL:L34773 EMBL:AF386969 EMBL:BT001161
IPI:IPI00538979 PIR:D96631 RefSeq:NP_176261.1 UniGene:At.8271
ProteinModelPortal:Q39216 SMR:Q39216 STRING:Q39216 PaxDb:Q39216
PRIDE:Q39216 EnsemblPlants:AT1G60620.1 GeneID:842356
KEGG:ath:AT1G60620 TAIR:At1g60620 InParanoid:Q39216
PhylomeDB:Q39216 ProtClustDB:CLSN2914384 ArrayExpress:Q39216
Genevestigator:Q39216 Uniprot:Q39216
Length = 385
Score = 165 (63.1 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 39/114 (34%), Positives = 65/114 (57%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + LT+ ++ F + +AN+ RR+ +AE P+MAI+ V + N++V+ DE +A R+
Sbjct: 83 VDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHRL 142
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVD-DQTRHVTTADLK 121
GLIP+ +D + L D + ++ F L VKC+ D R V T++LK
Sbjct: 143 GLIPIAADPRLFEYLSENDQPN----EKNTIVFKLHVKCLKGDPRRKVLTSELK 192
Score = 115 (45.5 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 22/34 (64%), Positives = 25/34 (73%)
Query: 147 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
DILI KL GQE+ L A+A KG GK HAKW+P A
Sbjct: 238 DILIAKLGPGQEIELEAHAVKGIGKTHAKWSPVA 271
>TAIR|locus:2025855 [details] [associations]
symbol:ATRPAC42 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 SMART:SM00662
EMBL:CP002684 GO:GO:0005730 GO:GO:0003677 GO:GO:0006351
EMBL:AC079675 GO:GO:0003899 KO:K03027 Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 EMBL:AK226775 IPI:IPI00518314
PIR:H96633 RefSeq:NP_176282.1 RefSeq:NP_849833.1 UniGene:At.8270
ProteinModelPortal:Q9C6C2 SMR:Q9C6C2 STRING:Q9C6C2 PRIDE:Q9C6C2
EnsemblPlants:AT1G60850.1 EnsemblPlants:AT1G60850.2 GeneID:842377
KEGG:ath:AT1G60850 TAIR:At1g60850 InParanoid:Q9C6C2 OMA:EHAKHQG
PhylomeDB:Q9C6C2 ProtClustDB:CLSN2681820 Genevestigator:Q9C6C2
Uniprot:Q9C6C2
Length = 375
Score = 164 (62.8 bits), Expect = 2.8e-21, Sum P(2) = 2.8e-21
Identities = 40/114 (35%), Positives = 66/114 (57%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + LT +++F + + + AN+ RR+ IAE P+MAI+ V + N++V+ DE +A R+
Sbjct: 76 VDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHRM 135
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTR-HVTTADLK 121
GLIP+ +D + L D + ++ F L VKC ++ R V T+DLK
Sbjct: 136 GLIPIAADPRLFEYLSEHD----QANEKNTIVFKLHVKCPKNRPRLKVLTSDLK 185
Score = 112 (44.5 bits), Expect = 2.8e-21, Sum P(2) = 2.8e-21
Identities = 21/32 (65%), Positives = 24/32 (75%)
Query: 147 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
DILI KL GQE+ L A+A KG GK HAKW+P
Sbjct: 231 DILIAKLAPGQEIELEAHAVKGIGKTHAKWSP 262
>POMBASE|SPBC1289.07c [details] [associations]
symbol:rpc40 "DNA-directed RNA polymerase I and III
subunit Rpc40" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IGI]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=IGI] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=IGI] [GO:0006995 "cellular
response to nitrogen starvation" evidence=IMP] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0070317 "negative
regulation of G0 to G1 transition" evidence=IMP] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IGI]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 PomBase:SPBC1289.07c GO:GO:0005829
GO:GO:0070317 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006995 GO:GO:0006383 GO:GO:0006360 GO:GO:0005736
GO:GO:0005666 GO:GO:0003899 eggNOG:COG0202 HOGENOM:HOG000230845
KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
EMBL:AF082512 EMBL:AB021859 PIR:T39358 RefSeq:NP_596831.1
ProteinModelPortal:O94616 DIP:DIP-29538N STRING:O94616
EnsemblFungi:SPBC1289.07c.1 GeneID:2539663 KEGG:spo:SPBC1289.07c
OMA:TVSRECL OrthoDB:EOG4VX5F0 NextBio:20800817 Uniprot:O94616
Length = 348
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 62/186 (33%), Positives = 101/186 (54%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V IT L E + F++ + S+AN+ RR+ IAE PT+A ++V + N++++ DE ++ RI
Sbjct: 48 VSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRI 107
Query: 69 GLIPLTSDEVV----DRILYSRDCTCVDFCSECSVEFTLDVKC-------VD--DQTRHV 115
GL+P+++D + L ++ T D+ + V F+L+ KC D D R
Sbjct: 108 GLVPISADPDMFKWFQHPLPGQEATHTDYDT---VVFSLNKKCEFNKNAATDEKDPKRLY 164
Query: 116 TTADLKSTDARVVPV-TSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHA 174
+++ S D P R AD DI++ KLR GQE+ L A+A G G++HA
Sbjct: 165 VNSEVYSGDLIWKPQGRQEERFADNPIRVVNPDIVVAKLRPGQEIDLEAHAILGIGQDHA 224
Query: 175 KWNPTA 180
K++P A
Sbjct: 225 KFSPVA 230
>WB|WBGene00019275 [details] [associations]
symbol:rpac-40 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 SMART:SM00662 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 eggNOG:COG0202
GeneTree:ENSGT00550000075060 HOGENOM:HOG000230845 KO:K03027
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 OMA:TVSRECL
EMBL:FO081035 RefSeq:NP_504166.2 ProteinModelPortal:Q9UAY9
SMR:Q9UAY9 STRING:Q9UAY9 PaxDb:Q9UAY9 EnsemblMetazoa:H43I07.2
GeneID:178823 KEGG:cel:CELE_H43I07.2 UCSC:H43I07.2 CTD:178823
WormBase:H43I07.2 InParanoid:Q9UAY9 NextBio:902702 Uniprot:Q9UAY9
Length = 366
Score = 147 (56.8 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 3 YANQPSVHITDLTDENV--KFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
Y +Q V + + +D+ + +F + E +AN+LRRV IAE PTMA++ + L N++V+
Sbjct: 50 YCDQIQVAMVNESDDGMTLEFDITRIEAPIANALRRVLIAEVPTMALEKIYLYQNTSVIQ 109
Query: 61 DEFIASRIGLIPLTSD 76
DE + R+GL+PL D
Sbjct: 110 DEVLCHRLGLLPLRVD 125
Score = 109 (43.4 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 29/91 (31%), Positives = 45/91 (49%)
Query: 101 FTLDVKCVDDQTRHVTTADLK------STDARV---VPVTSRNRDADMNEYGE--TDDIL 149
F ++V C ++ T D K S +R VP+ + + +DDIL
Sbjct: 160 FKINVSCTKNRNAVPTATDPKQLYHNSSVYSRAFEWVPIADQKTQFTEEAHPRMVSDDIL 219
Query: 150 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ KLR GQE+ +A KG G++HAK++P A
Sbjct: 220 VAKLRPGQEIEASCHAVKGIGRDHAKFSPVA 250
>CGD|CAL0005950 [details] [associations]
symbol:RPC40 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=IEA] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=IEA] [GO:0070317 "negative
regulation of G0 to G1 transition" evidence=IEA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 CGD:CAL0005950 GO:GO:0003677
GO:GO:0006351 EMBL:AACQ01000094 EMBL:AACQ01000093 GO:GO:0003899
eggNOG:COG0202 KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 RefSeq:XP_714923.1 RefSeq:XP_714986.1
ProteinModelPortal:Q59ZF5 STRING:Q59ZF5 GeneID:3643382
GeneID:3643427 KEGG:cal:CaO19.11048 KEGG:cal:CaO19.3564
Uniprot:Q59ZF5
Length = 369
Score = 225 (84.3 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 62/195 (31%), Positives = 102/195 (52%)
Query: 3 YANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDE 62
+ N+ + IT+L++ F + + S+AN+ RR+ IAE P++A + V + N++V+ DE
Sbjct: 71 FKNKFEIKITNLSERTGTFDLIHIDTSIANAFRRIMIAEVPSVAAETVYMFMNTSVIQDE 130
Query: 63 FIASRIGLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFTLDVKCVDDQTRHVTTADL 120
+A RIGLIP D D++ + + ++ F + ++ +LDV C + H A
Sbjct: 131 VLAQRIGLIPWKIDP--DKLTWVDETVDINDRFTEDNTIVLSLDVAC--SKNPH---APK 183
Query: 121 KSTDARVVPVTSR--NRDADMNEYGETD-------------DILIVKLRKGQELRLRAYA 165
STD R + S +D +G + DIL+ KLR GQE+ LRA+
Sbjct: 184 NSTDPRELYKNSHVYAKDFKFEPHGNQEEKFKDTPVVPCDPDILLAKLRPGQEISLRAHC 243
Query: 166 KKGFGKEHAKWNPTA 180
G G +HAK++P A
Sbjct: 244 VLGIGSDHAKFSPVA 258
>DICTYBASE|DDB_G0282339 [details] [associations]
symbol:rpa5 "RNA polymerase III subunit"
species:44689 "Dictyostelium discoideum" [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=ISS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISS] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 dictyBase:DDB_G0282339
EMBL:AAFI02000047 GenomeReviews:CM000152_GR GO:GO:0003677
GO:GO:0006383 GO:GO:0006360 GO:GO:0005736 GO:GO:0005666
GO:GO:0003899 eggNOG:COG0202 KO:K03027 OMA:GKCQRFL
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
RefSeq:XP_640267.1 ProteinModelPortal:Q54SN4 STRING:Q54SN4
PRIDE:Q54SN4 EnsemblProtists:DDB0216288 GeneID:8623528
KEGG:ddi:DDB_G0282339 ProtClustDB:CLSZ2729016 Uniprot:Q54SN4
Length = 345
Score = 221 (82.9 bits), Expect = 3.8e-18, P = 3.8e-18
Identities = 57/175 (32%), Positives = 93/175 (53%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
++I + + F++ + +AN+LRR+ I+E PTMAI+ V + N+++L DE +A R+
Sbjct: 61 INILSESANELVFEMIGIDAPIANALRRIMISEIPTMAIEKVYIINNTSILQDEVLAHRL 120
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQ-TRHVTTADLKSTDARV 127
G+IP+ VD ++ ++ +E ++ F L VKC D T + S
Sbjct: 121 GMIPIK----VDPRKFNFKLPNKEYTAEDTLIFQLKVKCEKDSVTGKIINETALSKHLIW 176
Query: 128 VPVTSRNRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
VP T + NE DDI I+KLR GQ + ++ Y +K G+EH KW+P
Sbjct: 177 VP-TQDQEEMFPNEEDRPRPMEDDIPIMKLRPGQVIDIQCYCEKNIGREHIKWSP 230
>MGI|MGI:103288 [details] [associations]
symbol:Polr1c "polymerase (RNA) I polypeptide C"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] Reactome:REACT_78136
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 MGI:MGI:103288 GO:GO:0005654
GO:GO:0003677 GO:GO:0006351 EMBL:CH466559 GO:GO:0003899
Reactome:REACT_86751 CleanEx:MM_POLR1E CTD:9533 eggNOG:COG0202
GeneTree:ENSGT00550000075060 HOVERGEN:HBG017743 KO:K03027
OMA:GKCQRFL OrthoDB:EOG47SSF0 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 EMBL:D31966 EMBL:AK132114 EMBL:AK146240
IPI:IPI00816991 PIR:A55082 RefSeq:NP_033111.2 UniGene:Mm.3458
ProteinModelPortal:P52432 SMR:P52432 STRING:P52432
PhosphoSite:P52432 PaxDb:P52432 PRIDE:P52432
Ensembl:ENSMUST00000087026 GeneID:20016 KEGG:mmu:20016
InParanoid:Q3UJZ9 NextBio:297517 Bgee:P52432 Genevestigator:P52432
GermOnline:ENSMUSG00000067148 Uniprot:P52432
Length = 346
Score = 216 (81.1 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 54/182 (29%), Positives = 96/182 (52%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + ++ ++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVQMDEDTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS------ 122
GLIP+ +D R+ R+ + +++F L V+C + ++D
Sbjct: 111 GLIPILADP---RLFEYRNQGEEEGTEIDTLQFRLQVRCTRNPNAAKDSSDPNELYVNHK 167
Query: 123 TDARVVPVTSRNRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
R + AD+ G DDILI +LR GQE+ L + KG GK+HAK++P
Sbjct: 168 VYTRHMTWVPLGNQADVFPEGTIRPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSP 227
Query: 179 TA 180
A
Sbjct: 228 VA 229
>UNIPROTKB|Q5RJK9 [details] [associations]
symbol:Polr1c "Protein Polr1c" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:CH473987 CTD:9533 eggNOG:COG0202 GeneTree:ENSGT00550000075060
HOGENOM:HOG000230845 HOVERGEN:HBG017743 KO:K03027 OrthoDB:EOG47SSF0
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 OMA:TVSRECL
RGD:1309689 EMBL:BC086597 IPI:IPI00373754 RefSeq:NP_001008331.1
UniGene:Rn.107990 STRING:Q5RJK9 Ensembl:ENSRNOT00000025787
GeneID:301246 KEGG:rno:301246 InParanoid:Q5RJK9 NextBio:648381
Genevestigator:Q5RJK9 Uniprot:Q5RJK9
Length = 346
Score = 215 (80.7 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 54/182 (29%), Positives = 96/182 (52%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + ++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDESTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS------ 122
GLIP+ +D R+ R+ + +++F L V+C + + ++D
Sbjct: 111 GLIPILADP---RLFEYRNPGEEEGTEIDTLQFRLQVRCTRNPSAAKDSSDPNELYVNHK 167
Query: 123 TDARVVPVTSRNRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
R + AD+ G DDILI +LR GQE+ L + KG GK+HAK++P
Sbjct: 168 VYTRHMTWVPLGNQADVFPEGTVRPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSP 227
Query: 179 TA 180
A
Sbjct: 228 VA 229
>SGD|S000006314 [details] [associations]
symbol:RPC40 "RNA polymerase subunit AC40" species:4932
"Saccharomyces cerevisiae" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=IC] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
SGD:S000006314 GO:GO:0003677 EMBL:BK006949 GO:GO:0006360
EMBL:U32445 GO:GO:0005736 GO:GO:0005666 GO:GO:0003899
Reactome:REACT_83470 Reactome:REACT_87991 GO:GO:0042797
eggNOG:COG0202 GeneTree:ENSGT00550000075060 HOGENOM:HOG000230845
KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
OMA:TVSRECL OrthoDB:EOG4VX5F0 EMBL:M15499 PIR:A25968
RefSeq:NP_015435.1 ProteinModelPortal:P07703 SMR:P07703 DIP:DIP-17N
IntAct:P07703 MINT:MINT-395916 STRING:P07703 PaxDb:P07703
PeptideAtlas:P07703 EnsemblFungi:YPR110C GeneID:856226
KEGG:sce:YPR110C CYGD:YPR110c NextBio:981464 Genevestigator:P07703
GermOnline:YPR110C Uniprot:P07703
Length = 335
Score = 213 (80.0 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 59/185 (31%), Positives = 97/185 (52%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V+I+ L F + + + S+AN+ RR+ I+E P++A ++V N++V+ DE +A RI
Sbjct: 42 VNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHRI 101
Query: 69 GLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEFTLDVKCV--DDQTRHVT------- 116
GL+PL D D + + D D F E ++ +L+VKC D + T
Sbjct: 102 GLVPLKVDP--DMLTWV-DSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYN 158
Query: 117 TADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
A + + D + P ++ AD DIL+ KLR GQE+ L+A+ G G +HAK
Sbjct: 159 NAHVYARDLKFEPQGRQSTTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAK 218
Query: 176 WNPTA 180
++P +
Sbjct: 219 FSPVS 223
>UNIPROTKB|F1RRJ4 [details] [associations]
symbol:POLR1C "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:CU928765 GeneTree:ENSGT00550000075060 OMA:GKCQRFL
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
Ensembl:ENSSSCT00000028506 ArrayExpress:F1RRJ4 Uniprot:F1RRJ4
Length = 351
Score = 214 (80.4 bits), Expect = 2.8e-17, P = 2.8e-17
Identities = 54/182 (29%), Positives = 96/182 (52%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 56 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 115
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS------ 122
GLIP+ +D R+ R+ + +++F L V+C + + ++D
Sbjct: 116 GLIPIHADP---RLFEYRNLGDEEGTEIDTLQFRLQVRCTRNPSAAKDSSDPNELYVNHK 172
Query: 123 TDARVVPVTSRNRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
R + AD+ G DDILI +LR GQE+ L KG GK+HAK++P
Sbjct: 173 VYTRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMQCVKGIGKDHAKFSP 232
Query: 179 TA 180
A
Sbjct: 233 VA 234
>ZFIN|ZDB-GENE-040426-1495 [details] [associations]
symbol:polr1c "polymerase (RNA) I polypeptide C"
species:7955 "Danio rerio" [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 ZFIN:ZDB-GENE-040426-1495
GO:GO:0003677 GO:GO:0006351 EMBL:AL928951 GO:GO:0003899
eggNOG:COG0202 GeneTree:ENSGT00550000075060 HOGENOM:HOG000230845
HOVERGEN:HBG017743 OMA:GKCQRFL OrthoDB:EOG47SSF0
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 IPI:IPI00491988
Ensembl:ENSDART00000128246 InParanoid:A2ATX1 Uniprot:A2ATX1
Length = 362
Score = 213 (80.0 bits), Expect = 4.3e-17, P = 4.3e-17
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 15 TDEN-VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPL 73
+DEN ++F + + ++AN+ RR+ +AE PTMAI+ V + N++++ DE +A R+GL+P+
Sbjct: 72 SDENTLEFDMIGIDAAIANAFRRILLAEVPTMAIEKVFIYNNTSIIQDEILAHRLGLVPI 131
Query: 74 TSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK---------STD 124
+D R+ R+ + +++ L VKC + ++D K S D
Sbjct: 132 KADP---RLFEYRNSEDQEGTEIDTIQLQLKVKCTRNPRAPKDSSDPKELYLNHMIYSGD 188
Query: 125 ARVVPVTSR-NRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
+ +P+ ++ + AD DIL+ ++R GQEL + + KG GK+HAK++P A
Sbjct: 189 IKWLPIGNQADVFADAKIGPVHGDILLAQVRPGQELDIVMHCVKGIGKDHAKFSPVA 245
>UNIPROTKB|E2RH57 [details] [associations]
symbol:POLR1C "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 CTD:9533 GeneTree:ENSGT00550000075060 KO:K03027
OMA:GKCQRFL Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
EMBL:AAEX03008344 RefSeq:XP_532147.1 ProteinModelPortal:E2RH57
Ensembl:ENSCAFT00000002964 GeneID:474912 KEGG:cfa:474912
NextBio:20850849 Uniprot:E2RH57
Length = 346
Score = 212 (79.7 bits), Expect = 4.4e-17, P = 4.4e-17
Identities = 54/182 (29%), Positives = 97/182 (53%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS------ 122
GLIP+ +D R+ R+ + +++F L V+C + ++D
Sbjct: 111 GLIPIHADP---RLFEYRNQGDDEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHK 167
Query: 123 TDARVVPVTSRNRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
+R + AD+ G DDILI +LR GQE+ L + KG GK+HAK++P
Sbjct: 168 VYSRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSP 227
Query: 179 TA 180
A
Sbjct: 228 VA 229
>ASPGD|ASPL0000043748 [details] [associations]
symbol:AN2415 species:162425 "Emericella nidulans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0006995 "cellular response to nitrogen
starvation" evidence=IEA] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=IEA] [GO:0070317 "negative
regulation of G0 to G1 transition" evidence=IEA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0003677 EMBL:BN001307
GO:GO:0006351 GO:GO:0003899 EMBL:AACD01000039 eggNOG:COG0202
HOGENOM:HOG000230845 KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 OMA:TVSRECL OrthoDB:EOG4VX5F0 RefSeq:XP_660019.1
ProteinModelPortal:Q5BAL5 STRING:Q5BAL5
EnsemblFungi:CADANIAT00009122 GeneID:2874697 KEGG:ani:AN2415.2
Uniprot:Q5BAL5
Length = 373
Score = 143 (55.4 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 25/53 (47%), Positives = 39/53 (73%)
Query: 21 FQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPL 73
F + + S+AN+ RR+ +AE PT+AI+WV + N++V+ DE +A R+GLIPL
Sbjct: 66 FSLIGLDASIANAFRRIVMAEVPTLAIEWVYIHNNTSVIQDEVLAQRLGLIPL 118
Score = 94 (38.1 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 147 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
DIL+ KLR GQ++ L + KG G +HAK++P A
Sbjct: 210 DILVAKLRPGQKIELEMHCIKGIGADHAKFSPVA 243
>UNIPROTKB|Q32L22 [details] [associations]
symbol:POLR1C "DNA-directed RNA polymerases I and III
subunit RPAC1" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 EMBL:BC109803 IPI:IPI00709012
RefSeq:NP_001033213.1 UniGene:Bt.42189 ProteinModelPortal:Q32L22
STRING:Q32L22 PRIDE:Q32L22 Ensembl:ENSBTAT00000025246 GeneID:516337
KEGG:bta:516337 CTD:9533 eggNOG:COG0202
GeneTree:ENSGT00550000075060 HOGENOM:HOG000230845
HOVERGEN:HBG017743 InParanoid:Q32L22 KO:K03027 OMA:GKCQRFL
OrthoDB:EOG47SSF0 NextBio:20872197 Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 Uniprot:Q32L22
Length = 346
Score = 211 (79.3 bits), Expect = 5.7e-17, P = 5.7e-17
Identities = 56/182 (30%), Positives = 98/182 (53%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS--TDAR 126
GLIP+ +D R+ R+ +++F L V+C + ++D + R
Sbjct: 111 GLIPIHADP---RLFEYRNQGDEGGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHR 167
Query: 127 VVP--VT--SRNRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
V +T AD+ G DDILI +LR GQE+ L + KG GK+HAK++P
Sbjct: 168 VYTRHMTWVPLGNQADLFPEGAIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSP 227
Query: 179 TA 180
A
Sbjct: 228 VA 229
>UNIPROTKB|O15160 [details] [associations]
symbol:POLR1C "DNA-directed RNA polymerases I and III
subunit RPAC1" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006360
"transcription from RNA polymerase I promoter" evidence=TAS]
[GO:0006361 "transcription initiation from RNA polymerase I
promoter" evidence=TAS] [GO:0006362 "transcription elongation from
RNA polymerase I promoter" evidence=TAS] [GO:0006363 "termination
of RNA polymerase I transcription" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0006385 "transcription elongation from RNA polymerase III
promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
III transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] Reactome:REACT_71 InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0005654 GO:GO:0003677 Reactome:REACT_1788
GO:GO:0006363 GO:GO:0006362 GO:GO:0006361 GO:GO:0005736
GO:GO:0003899 GO:GO:0006386 GO:GO:0006385 EMBL:AL355802
CleanEx:HS_POLR1E CTD:9533 eggNOG:COG0202 HOGENOM:HOG000230845
HOVERGEN:HBG017743 KO:K03027 OMA:GKCQRFL Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 EMBL:AF008442 EMBL:AF047441
EMBL:BC008863 IPI:IPI00005179 IPI:IPI00217386 RefSeq:NP_976035.1
UniGene:Hs.584839 ProteinModelPortal:O15160 SMR:O15160
DIP:DIP-27587N IntAct:O15160 MINT:MINT-1137932 STRING:O15160
PhosphoSite:O15160 REPRODUCTION-2DPAGE:IPI00217386
SWISS-2DPAGE:O15160 PaxDb:O15160 PRIDE:O15160 DNASU:9533
Ensembl:ENST00000304004 Ensembl:ENST00000372389 GeneID:9533
KEGG:hsa:9533 UCSC:uc003ovn.3 UCSC:uc003ovo.2 GeneCards:GC06P043484
H-InvDB:HIX0005907 HGNC:HGNC:20194 HPA:HPA031010 MIM:248390
MIM:610060 neXtProt:NX_O15160 Orphanet:861 PharmGKB:PA134882004
InParanoid:O15160 PhylomeDB:O15160 GenomeRNAi:9533 NextBio:35740
ArrayExpress:O15160 Bgee:O15160 CleanEx:HS_POLR1C
Genevestigator:O15160 GermOnline:ENSG00000171453 Uniprot:O15160
Length = 346
Score = 211 (79.3 bits), Expect = 5.7e-17, P = 5.7e-17
Identities = 54/182 (29%), Positives = 95/182 (52%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ + +++F L V+C + ++D
Sbjct: 111 GLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHK 167
Query: 129 PVTSR------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
T AD+ G DDILI +LR GQE+ L + KG GK+HAK++P
Sbjct: 168 VYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSP 227
Query: 179 TA 180
A
Sbjct: 228 VA 229
>UNIPROTKB|E1C548 [details] [associations]
symbol:POLR1C "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 CTD:9533
GeneTree:ENSGT00550000075060 KO:K03027 OMA:GKCQRFL
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
EMBL:AADN02011864 IPI:IPI00572554 RefSeq:XP_419502.1
UniGene:Gga.1059 Ensembl:ENSGALT00000016848 GeneID:421452
KEGG:gga:421452 NextBio:20824218 Uniprot:E1C548
Length = 346
Score = 201 (75.8 bits), Expect = 8.1e-16, P = 8.1e-16
Identities = 55/177 (31%), Positives = 95/177 (53%)
Query: 16 DENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLTS 75
D ++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+GLIP+ +
Sbjct: 58 DGVLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRA 117
Query: 76 DEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTAD---------LKSTDAR 126
D R+ R+ + +++F L +KC + ++D + S
Sbjct: 118 DP---RLFEYRNQGDEEGTEIDTLQFQLKIKCSRNPQAAKESSDPNELYFNHKVYSKHMT 174
Query: 127 VVPVTSRNR---DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
VP+ ++ DAD DDILI LR GQE+ + + KG GK+HAK++P A
Sbjct: 175 WVPLGNQTDLFPDADFRPVH--DDILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVA 229
>FB|FBgn0031657 [details] [associations]
symbol:CG3756 species:7227 "Drosophila melanogaster"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;NAS] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=NAS] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=NAS] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=NAS] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=NAS] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
SMART:SM00662 GO:GO:0005875 EMBL:AE014134 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 eggNOG:COG0202
GeneTree:ENSGT00550000075060 KO:K03027 Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 OMA:TVSRECL EMBL:AY119625
RefSeq:NP_608885.1 UniGene:Dm.30765 SMR:Q9VMX3 IntAct:Q9VMX3
MINT:MINT-1550361 STRING:Q9VMX3 EnsemblMetazoa:FBtr0078994
GeneID:33712 KEGG:dme:Dmel_CG3756 UCSC:CG3756-RA
FlyBase:FBgn0031657 InParanoid:Q9VMX3 OrthoDB:EOG4X95ZS
GenomeRNAi:33712 NextBio:784915 Uniprot:Q9VMX3
Length = 333
Score = 197 (74.4 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 59/191 (30%), Positives = 104/191 (54%)
Query: 4 ANQPSVHITDL-TDEN-VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSD 61
A + +HI + DE+ ++F + ++AN+ RR+ +++ P+MAI+ V + N++++ D
Sbjct: 36 AFKEKLHIKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQD 95
Query: 62 EFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVD--DQTRHVTTAD 119
E +A R+GL+PL +D + Y + + + ++EF L VKC D + + D
Sbjct: 96 EVLAHRMGLLPLRADPRL--FAYRTEESTEAGTEQDTLEFELKVKCSRRRDAGKDQSNFD 153
Query: 120 LKSTDARV----VPVTSRNRDADMNEYGET------DDILIVKLRKGQELRLRAYAKKGF 169
+ +V + + + A + Y E+ DDILI +LR G EL LR A KG
Sbjct: 154 DIYKNHKVYSGHLKWLPKGKQAQI--YSESAVNCIHDDILIAQLRPGHELDLRLVAVKGL 211
Query: 170 GKEHAKWNPTA 180
G++HAK++P A
Sbjct: 212 GRDHAKFSPVA 222
>UNIPROTKB|E7EQB9 [details] [associations]
symbol:POLR1C "DNA-directed RNA polymerases I and III
subunit RPAC1" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 EMBL:AL355802
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 HGNC:HGNC:20194
IPI:IPI00552946 ProteinModelPortal:E7EQB9 SMR:E7EQB9
Ensembl:ENST00000372344 ArrayExpress:E7EQB9 Bgee:E7EQB9
Uniprot:E7EQB9
Length = 296
Score = 184 (69.8 bits), Expect = 3.2e-14, P = 3.2e-14
Identities = 52/181 (28%), Positives = 92/181 (50%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVV 128
GLIP+ +D R+ R+ + +++F L V+C + ++D
Sbjct: 111 GLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHK 167
Query: 129 PVTSR------NRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEHAKW-N 177
T AD+ G DDILI +LR GQE+ L + KG GK+ A+ N
Sbjct: 168 VYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKKVARVAN 227
Query: 178 P 178
P
Sbjct: 228 P 228
>UNIPROTKB|G4MQN0 [details] [associations]
symbol:MGG_09284 "DNA-directed RNA polymerase I and III
subunit RPAC1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0043581 "mycelium development" evidence=IEP] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 EMBL:CM001231
GO:GO:0043581 GO:GO:0003899 KO:K03027 Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 RefSeq:XP_003709929.1
EnsemblFungi:MGG_09284T0 GeneID:2680208 KEGG:mgr:MGG_09284
Uniprot:G4MQN0
Length = 373
Score = 183 (69.5 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 59/194 (30%), Positives = 97/194 (50%)
Query: 5 NQPSVHITDLTDEN----VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLS 60
N+ S H+ +N F + + S+AN+ RR+ IAE P++AI+ V + N++V+
Sbjct: 47 NEFSQHLNIQFHQNDPSLASFSLIGVDASIANAFRRIMIAEIPSLAIERVFITNNTSVIQ 106
Query: 61 DEFIASRIGLIPLT-SDEVVDRIL--YSRDCTC-VDFCSECS-VEFTLDVKCV------- 108
DE +A R+GL+PL S E + + + + R T D + + V L+VKC
Sbjct: 107 DEVLAQRLGLVPLKGSKEGLRKFMKPFKRTETGGFDNSFDFNTVNLRLNVKCTRNPDAKP 166
Query: 109 --DDQTRHVTTADLKSTDARVVPVTSRNR--DADMNEYGETDDILIVKLRKGQELRLRAY 164
+D + ++ ++D VP + D DILI KLR GQ + L +
Sbjct: 167 GENDPNKAYIKPNVYASDIEFVPAGQQTDYFSGDGAIVPVNPDILIAKLRPGQGIDLEMH 226
Query: 165 AKKGFGKEHAKWNP 178
A G+G +HAK++P
Sbjct: 227 AHIGYGWDHAKFSP 240
>UNIPROTKB|H3BRR2 [details] [associations]
symbol:POLR2C "DNA-directed RNA polymerase II subunit RPB3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
InterPro:IPR009025 InterPro:IPR011261 Pfam:PF01193 GO:GO:0003677
GO:GO:0006351 EMBL:AC009052 GO:GO:0003899 SUPFAM:SSF55257
HGNC:HGNC:9189 ProteinModelPortal:H3BRR2 SMR:H3BRR2
Ensembl:ENST00000562599 Bgee:H3BRR2 Uniprot:H3BRR2
Length = 46
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 33/43 (76%), Positives = 40/43 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSVANSLRRVFIAETP 43
MPYANQP+V IT+LTDENVKF +E+T+L+VANS+RRVFIAE P
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVP 43
>UNIPROTKB|F1LXY3 [details] [associations]
symbol:Polr1c "Protein Polr1c" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 SMART:SM00662 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
IPI:IPI00948748 Ensembl:ENSRNOT00000067036 RGD:1309689
ArrayExpress:F1LXY3 Uniprot:F1LXY3
Length = 260
Score = 146 (56.5 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 43/146 (29%), Positives = 74/146 (50%)
Query: 45 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 104
+A++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 1 VAVEKVLVYNNTSIVQDEILAHRLGLIPILADP---RLFEYRNPGEEEGTEIDTLQFRLQ 57
Query: 105 VKCVDDQTRHVTTADLKS------TDARVVPVTSRNRDADMNEYGET----DDILIVKLR 154
V+C + + ++D R + AD+ G DDILI +LR
Sbjct: 58 VRCTRNPSAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTVRPVHDDILIAQLR 117
Query: 155 KGQELRLRAYAKKGFGKEHAKWNPTA 180
GQE+ L + KG GK+HAK++P A
Sbjct: 118 PGQEIDLMMHCVKGIGKDHAKFSPVA 143
>UNIPROTKB|D6RDJ3 [details] [associations]
symbol:POLR1C "DNA-directed RNA polymerases I and III
subunit RPAC1" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 EMBL:AL355802
OrthoDB:EOG47SSF0 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 HGNC:HGNC:20194 IPI:IPI00966384
ProteinModelPortal:D6RDJ3 SMR:D6RDJ3 Ensembl:ENST00000428025
ArrayExpress:D6RDJ3 Bgee:D6RDJ3 Uniprot:D6RDJ3
Length = 124
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 31/93 (33%), Positives = 58/93 (62%)
Query: 16 DEN-VKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIPLT 74
DEN ++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+GLIP+
Sbjct: 2 DENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIH 61
Query: 75 SDEVVDRILYSRDCTCVDFCSECSVEFTLDVKC 107
+D R+ R+ + +++F L V+C
Sbjct: 62 ADP---RLFEYRNQGDEEGTEIDTLQFRLQVRC 91
>UNIPROTKB|H0Y723 [details] [associations]
symbol:POLR1C "DNA-directed RNA polymerases I and III
subunit RPAC1" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 EMBL:AL355802
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 HGNC:HGNC:20194
ProteinModelPortal:H0Y723 Ensembl:ENST00000423780 Uniprot:H0Y723
Length = 140
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 23/68 (33%), Positives = 47/68 (69%)
Query: 9 VHITDLTDENVKFQVEDTELSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRI 68
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE +A R+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 69 GLIPLTSD 76
GLIP+ +D
Sbjct: 111 GLIPIHAD 118
>UNIPROTKB|Q57648 [details] [associations]
symbol:rpoD "DNA-directed RNA polymerase subunit D"
species:243232 "Methanocaldococcus jannaschii DSM 2661" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00320 InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 InterPro:IPR022842 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0003677 GO:GO:0006351
EMBL:L77117 GenomeReviews:L77117_GR GO:GO:0003899 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 PIR:A64324
RefSeq:NP_247160.1 ProteinModelPortal:Q57648 IntAct:Q57648
GeneID:1451040 KEGG:mja:MJ_0192 KO:K03047 OMA:HAKWQPC
ProtClustDB:PRK14979 Uniprot:Q57648
Length = 191
Score = 118 (46.6 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 28 LSVANSLRRVFIAETPTMAIDWVQLEANSTVLSDEFIASRIGLIP-----LTSDEVVDRI 82
+S +N++RR+ I+E PT AI+ V + NS+ + DE +A R+GLIP L +EV+
Sbjct: 24 ISFSNAIRRIMISEVPTFAIEDVYIYENSSSMDDEILAHRLGLIPIKGKPLLENEVITFT 83
Query: 83 LYSRDCTCVDFCSECSVE 100
L ++ C + S+ E
Sbjct: 84 L-EKEGPCTVYSSDLKSE 100
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.132 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 181 181 0.00095 109 3 11 22 0.43 32
31 0.40 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 43
No. of states in DFA: 595 (63 KB)
Total size of DFA: 162 KB (2096 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.04u 0.08s 17.12t Elapsed: 00:00:16
Total cpu time: 17.05u 0.08s 17.13t Elapsed: 00:00:17
Start: Thu Aug 15 12:10:03 2013 End: Thu Aug 15 12:10:20 2013