BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1283
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P52654|TF2AA_DROME Transcription initiation factor IIA subunit 1 OS=Drosophila
melanogaster GN=TfIIA-L PE=1 SV=2
Length = 366
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 38/53 (71%)
Query: 6 QSLTMKLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKLFGIGVGKLS 58
Q+ +K+Y AVI DVI NV++AF +EGVDEQVLQE+K +W KL +LS
Sbjct: 5 QTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLASKAVELS 57
>sp|Q8R4I4|TF2AY_MOUSE TFIIA-alpha and beta-like factor OS=Mus musculus GN=Gtf2a1l PE=2
SV=2
Length = 468
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 34/44 (77%)
Query: 7 SLTMKLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKLF 50
+L KLYQ+VI DVI V++ F EEG++EQVL++LK +WE K+
Sbjct: 5 NLVPKLYQSVIEDVIEGVRDLFAEEGIEEQVLKDLKKLWETKVL 48
>sp|Q5RCU0|TF2AA_PONAB Transcription initiation factor IIA subunit 1 OS=Pongo abelii
GN=GTF2A1 PE=2 SV=1
Length = 376
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 1 MAGTPQSLTM-KLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKL 49
MA + + T+ KLY++VI DVIN+V++ F ++GVDEQVL ELK +WE KL
Sbjct: 1 MANSANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKL 50
>sp|P52655|TF2AA_HUMAN Transcription initiation factor IIA subunit 1 OS=Homo sapiens
GN=GTF2A1 PE=1 SV=1
Length = 376
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 1 MAGTPQSLTM-KLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKL 49
MA + + T+ KLY++VI DVIN+V++ F ++GVDEQVL ELK +WE KL
Sbjct: 1 MANSANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKL 50
>sp|O08949|TF2AA_RAT Transcription initiation factor IIA subunit 1 OS=Rattus
norvegicus GN=Gtf2a1 PE=2 SV=1
Length = 377
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 1 MAGTPQSLTM-KLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKL 49
MA + + T+ KLY++VI DVIN+V++ F ++GVDEQVL ELK +WE KL
Sbjct: 1 MANSANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKL 50
>sp|Q99PM3|TF2AA_MOUSE Transcription initiation factor IIA subunit 1 OS=Mus musculus
GN=Gtf2a1 PE=2 SV=2
Length = 378
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 1 MAGTPQSLTM-KLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKL 49
MA + + T+ KLY++VI DVIN+V++ F ++GVDEQVL ELK +WE KL
Sbjct: 1 MANSANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKL 50
>sp|Q9UNN4|TF2AY_HUMAN TFIIA-alpha and beta-like factor OS=Homo sapiens GN=GTF2A1L PE=2
SV=2
Length = 478
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 11 KLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKLF 50
KLY++VI DVI V+ F EEG++EQVL++LK +WE K+
Sbjct: 9 KLYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVL 48
>sp|P32773|TOA1_YEAST Transcription initiation factor IIA large subunit
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TOA1 PE=1 SV=1
Length = 286
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 6/74 (8%)
Query: 11 KLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKLFGIGVGKLSKRKEWMSKCYRS 70
++Y+ ++ V+N V+E F+ G+DEQ LQ+LK+IW+ KL V S W ++ +
Sbjct: 8 RVYEIIVESVVNEVREDFENAGIDEQTLQDLKNIWQKKLTETKVTTFS----WDNQ-FNE 62
Query: 71 SNISG-RPSLSGNL 83
NI+G + L+ NL
Sbjct: 63 GNINGVQNDLNFNL 76
>sp|Q9USU9|TOA1_SCHPO Transcription initiation factor IIA large subunit
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=toa1 PE=1 SV=1
Length = 369
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 6 QSLTMKLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKLFGIGVGKL 57
S+ ++Y VI DVI N + F+E GVD+ L+EL+++W++KL V
Sbjct: 3 NSIVGEVYHHVILDVIANSRSDFEENGVDDATLRELQNLWQSKLVATDVATF 54
>sp|Q54G80|TF2AA_DICDI Transcription initiation factor IIA subunit 1 OS=Dictyostelium
discoideum GN=gtf2a1 PE=3 SV=1
Length = 310
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 12 LYQAVIADVINNVKEAFQE----EGVDEQVLQELKHIWEAKLFGIG 53
+Y+ ++ DVI N+K + E VDE ++ E++ +W +L G
Sbjct: 6 VYKYIVFDVIRNIKSNIKNDSDTENVDESIIDEIQTMWLDRLTQTG 51
>sp|P50124|PUR7_CYBJA Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Cyberlindnera jadinii GN=ADE1 PE=3 SV=1
Length = 301
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 33 VDEQVLQELKHIWEAKLFGIGVGKLSKRKEWMSKCYRSSNISGRPSLS 80
VDE + + W AK + +G G+ S K+++ S+ ++G+ +S
Sbjct: 228 VDEVLTPDSSRFWNAKTYEVGKGQDSYDKQFLRDWLTSNGLAGKEGVS 275
>sp|Q9P2D7|DYH1_HUMAN Dynein heavy chain 1, axonemal OS=Homo sapiens GN=DNAH1 PE=2 SV=4
Length = 4330
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 46/101 (45%), Gaps = 21/101 (20%)
Query: 10 MKLYQAVIADVINNVKEAFQEEGVDEQVLQE------LKHI----------WEAKLFGIG 53
+KL+ +++D+ +KE + G+ ++ ++E LK + +E + G
Sbjct: 1798 LKLFSGIVSDLFPTIKEEDTDYGILDEAIREACRNSNLKDVEGFLTKCIQLYETTVVRHG 1857
Query: 54 VGKLSKRKEWMSKCYR-----SSNISGRPSLSGNLKARLVY 89
+ + S CYR +++ G+PS+SG + + Y
Sbjct: 1858 LMLVGPTGSGKSTCYRVLAAAMTSLKGQPSISGGMYEAVNY 1898
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,981,987
Number of Sequences: 539616
Number of extensions: 1602093
Number of successful extensions: 4072
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4059
Number of HSP's gapped (non-prelim): 19
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)