AmiGO: BLAST Results


BLAST match view associations BLAST with TfIIA-L TfIIA-L TfIIA-L Transcription factor IIA L	protein from Drosophila melanogaster	9.7e-10
BLAST match view associations BLAST with GTF2A1 GTF2A1 GTF2A1 Transcription initiation factor IIA subunit 1	protein from Homo sapiens	1.6e-08
BLAST match view associations BLAST with Gtf2a1 Gtf2a1 Gtf2a1 general transcription factor IIA, 1	gene from Rattus norvegicus	1.6e-08
BLAST match view associations BLAST with Gtf2a1 Gtf2a1 Gtf2a1 general transcription factor II A, 1	protein from Mus musculus	1.7e-08
BLAST match view associations BLAST with orf19.2682 orf19.2682 orf19.2682	gene_product from Candida albicans	2.2e-08
BLAST match view associations BLAST with GTF2A1 GTF2A1 GTF2A1 Uncharacterized protein	protein from Bos taurus	3.5e-08
BLAST match view associations BLAST with GTF2A1 GTF2A1 GTF2A1 Uncharacterized protein	protein from Canis lupus familiaris	3.8e-08
BLAST match view associations BLAST with GTF2A1 GTF2A1 GTF2A1 Uncharacterized protein	protein from Canis lupus familiaris	4.5e-08
BLAST match view associations BLAST with Gtf2a1l Gtf2a1l Gtf2a1l general transcription factor IIA, 1-like	protein from Mus musculus	6.6e-08
BLAST match view associations BLAST with gtf2a1 gtf2a1 gtf2a1 general transcription factor IIA, 1	gene_product from Danio rerio	7.1e-08
BLAST match view associations BLAST with GTF2A1L GTF2A1L GTF2A1L Uncharacterized protein	protein from Bos taurus	1.7e-07
BLAST match view associations BLAST with Gtf2a1l Gtf2a1l Gtf2a1l general transcription factor IIA, 1-like	gene from Rattus norvegicus	1.8e-07
BLAST match view associations BLAST with GTF2A1L GTF2A1L GTF2A1L TFIIA-alpha and beta-like factor	protein from Homo sapiens	2.7e-07
BLAST match view associations BLAST with STON1 STON1 STON1 Uncharacterized protein	protein from Canis lupus familiaris	3.0e-07
BLAST match view associations BLAST with TOA1 TOA1 TOA1 TFIIA large subunit	gene from Saccharomyces cerevisiae	3.1e-07
BLAST match view associations BLAST with GTF2A1 GTF2A1 GTF2A1 Transcription initiation factor IIA beta chain	protein from Homo sapiens	4.8e-07
BLAST match view associations BLAST with GTF2A1L GTF2A1L GTF2A1L TFIIA-alpha and beta-like factor	protein from Homo sapiens	5.0e-07
BLAST match view associations BLAST with STON1 STON1 STON1 Uncharacterized protein	protein from Canis lupus familiaris	8.0e-07
BLAST match view associations BLAST with ALF ALF ALF Protein STON1-GTF2A1L	protein from Homo sapiens	1.6e-06
BLAST match view associations BLAST with STON1 STON1 STON1 Uncharacterized protein	protein from Gallus gallus	4.4e-06
BLAST match view associations BLAST with zgc:154100 zgc:154100 zgc:154100	gene_product from Danio rerio	1.8e-05
BLAST match view associations BLAST with pqn-51 pqn-51 pqn-51	gene from Caenorhabditis elegans	2.1e-05
BLAST match view associations BLAST with AT1G07470 AT1G07470 AT1G07470	protein from Arabidopsis thaliana	0.00036
BLAST match view associations BLAST with AT1G07480 AT1G07480 AT1G07480	protein from Arabidopsis thaliana	0.00036

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy1283
        (123 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0011289 - symbol:TfIIA-L "Transcription factor IIA...   147  9.7e-10   1
UNIPROTKB|F1NTD4 - symbol:GTF2A1 "Uncharacterized protein...   139  7.8e-09   1
UNIPROTKB|P52655 - symbol:GTF2A1 "Transcription initiatio...   136  1.6e-08   1
RGD|69246 - symbol:Gtf2a1 "general transcription factor I...   136  1.6e-08   1
MGI|MGI:1933277 - symbol:Gtf2a1 "general transcription fa...   136  1.7e-08   1
CGD|CAL0003530 - symbol:orf19.2682 species:5476 "Candida ...   132  2.2e-08   1
UNIPROTKB|F1MII0 - symbol:GTF2A1 "Uncharacterized protein...   133  3.5e-08   1
UNIPROTKB|J9NWE1 - symbol:GTF2A1 "Uncharacterized protein...   133  3.8e-08   1
UNIPROTKB|F1PJI5 - symbol:GTF2A1 "Uncharacterized protein...   132  4.5e-08   1
MGI|MGI:1919078 - symbol:Gtf2a1l "general transcription f...   132  6.6e-08   1
ZFIN|ZDB-GENE-030131-2694 - symbol:gtf2a1 "general transc...   130  7.1e-08   1
UNIPROTKB|F1MSE9 - symbol:GTF2A1L "Uncharacterized protei...   127  1.7e-07   1
RGD|1308625 - symbol:Gtf2a1l "general transcription facto...   128  1.8e-07   1
UNIPROTKB|C9JJY0 - symbol:GTF2A1L "TFIIA-alpha and beta-l...   124  2.7e-07   1
UNIPROTKB|F1PKI8 - symbol:STON1 "Uncharacterized protein"...   126  3.0e-07   1
SGD|S000005720 - symbol:TOA1 "TFIIA large subunit" specie...   122  3.1e-07   1
UNIPROTKB|J3KNC0 - symbol:GTF2A1 "Transcription initiatio...   115  4.8e-07   1
UNIPROTKB|Q9UNN4 - symbol:GTF2A1L "TFIIA-alpha and beta-l...   124  5.0e-07   1
UNIPROTKB|E2R3X3 - symbol:STON1 "Uncharacterized protein"...   126  8.0e-07   1
UNIPROTKB|Q53S48 - symbol:ALF "Putative uncharacterized p...   124  1.6e-06   1
UNIPROTKB|E1BRM0 - symbol:STON1 "Uncharacterized protein"...   120  4.4e-06   1
ZFIN|ZDB-GENE-060929-28 - symbol:zgc:154100 "zgc:154100" ...   113  1.8e-05   1
WB|WBGene00004136 - symbol:pqn-51 species:6239 "Caenorhab...   107  2.1e-05   1
POMBASE|SPBC28F2.09 - symbol:toa1 "transcription factor T...   105  3.7e-05   1
TAIR|locus:2025027 - symbol:AT1G07470 "AT1G07470" species...    96  0.00036   1
TAIR|locus:2024977 - symbol:AT1G07480 "AT1G07480" species...    96  0.00036   1


>FB|FBgn0011289 [details] [associations]
            symbol:TfIIA-L "Transcription factor IIA L" species:7227
            "Drosophila melanogaster" [GO:0001094 "TFIID-class transcription
            factor binding" evidence=IPI] [GO:0005672 "transcription factor
            TFIIA complex" evidence=ISS;IDA] [GO:0017025 "TBP-class protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=NAS;IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0001128 "RNA polymerase
            II transcription coactivator activity involved in preinitiation
            complex assembly" evidence=IPI] [GO:0001129 "TBP-class protein
            binding RNA polymerase II transcription factor activity involved in
            preinitiation complex assembly" evidence=IPI] [GO:0006367
            "transcription initiation from RNA polymerase II promoter"
            evidence=ISS] [GO:0006357 "regulation of transcription from RNA
            polymerase II promoter" evidence=NAS] InterPro:IPR004855
            InterPro:IPR009083 InterPro:IPR009088 InterPro:IPR013028
            Pfam:PF03153 EMBL:AE014297 GO:GO:0045944 GO:GO:0001129
            GeneTree:ENSGT00530000063152 eggNOG:COG5149 GO:GO:0005672
            Gene3D:2.30.18.10 SUPFAM:SSF50784 SUPFAM:SSF47396 KO:K03122
            Gene3D:1.10.287.100 PANTHER:PTHR12694 EMBL:S66759 EMBL:AY061325
            PIR:A49076 RefSeq:NP_476995.1 RefSeq:NP_476996.1 RefSeq:NP_733208.1
            UniGene:Dm.3640 ProteinModelPortal:P52654 SMR:P52654 IntAct:P52654
            MINT:MINT-313938 STRING:P52654 PaxDb:P52654
            EnsemblMetazoa:FBtr0085155 GeneID:43284 KEGG:dme:Dmel_CG5930
            CTD:43284 FlyBase:FBgn0011289 InParanoid:P52654 OMA:QEMKQVW
            OrthoDB:EOG4VHHPH PhylomeDB:P52654 GenomeRNAi:43284 NextBio:833140
            Bgee:P52654 GermOnline:CG5930 Uniprot:P52654
        Length = 366

 Score = 147 (56.8 bits), Expect = 9.7e-10, P = 9.7e-10
 Identities = 29/53 (54%), Positives = 38/53 (71%)

Query:     6 QSLTMKLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKLFGIGVGKLS 58
             Q+  +K+Y AVI DVI NV++AF +EGVDEQVLQE+K +W  KL      +LS
Sbjct:     5 QTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLASKAVELS 57


>UNIPROTKB|F1NTD4 [details] [associations]
            symbol:GTF2A1 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0005672 "transcription factor TFIIA complex"
            evidence=IEA] [GO:0006367 "transcription initiation from RNA
            polymerase II promoter" evidence=IEA] InterPro:IPR004855
            InterPro:IPR009083 InterPro:IPR009088 InterPro:IPR013028
            Pfam:PF03153 GO:GO:0003677 GO:GO:0006367
            GeneTree:ENSGT00530000063152 GO:GO:0005672 Gene3D:2.30.18.10
            SUPFAM:SSF50784 SUPFAM:SSF47396 Gene3D:1.10.287.100
            PANTHER:PTHR12694 OMA:HMSATGM EMBL:AADN02003552 IPI:IPI00577234
            Ensembl:ENSGALT00000037655 ArrayExpress:F1NTD4 Uniprot:F1NTD4
        Length = 379

 Score = 139 (54.0 bits), Expect = 7.8e-09, P = 7.8e-09
 Identities = 27/39 (69%), Positives = 33/39 (84%)

Query:    11 KLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKL 49
             KLY++VI DVIN+V+E F +EGVDEQVL ELK +WE KL
Sbjct:    14 KLYRSVIEDVINDVREVFLDEGVDEQVLMELKTLWENKL 52


>UNIPROTKB|P52655 [details] [associations]
            symbol:GTF2A1 "Transcription initiation factor IIA subunit
            1" species:9606 "Homo sapiens" [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0003713 "transcription coactivator
            activity" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=IDA;TAS] [GO:0006367 "transcription initiation from RNA
            polymerase II promoter" evidence=TAS] [GO:0006368 "transcription
            elongation from RNA polymerase II promoter" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
            reproduction" evidence=TAS] [GO:0003677 "DNA binding" evidence=IDA]
            [GO:0005672 "transcription factor TFIIA complex" evidence=IDA]
            [GO:0017025 "TBP-class protein binding" evidence=IPI] [GO:0008134
            "transcription factor binding" evidence=IPI] [GO:0046982 "protein
            heterodimerization activity" evidence=IPI] Reactome:REACT_71
            InterPro:IPR004855 InterPro:IPR009083 InterPro:IPR009088
            InterPro:IPR013028 Pfam:PF03153 Reactome:REACT_116125 GO:GO:0016032
            GO:GO:0006355 GO:GO:0003677 GO:GO:0003713 GO:GO:0006368
            GO:GO:0006367 Reactome:REACT_1788 eggNOG:COG5149 GO:GO:0005672
            Gene3D:2.30.18.10 SUPFAM:SSF50784 SUPFAM:SSF47396 PDB:1NVP
            PDBsum:1NVP KO:K03122 Gene3D:1.10.287.100 PANTHER:PTHR12694
            EMBL:X75383 EMBL:X77225 EMBL:D14887 EMBL:D14886 EMBL:AC010582
            EMBL:BC107155 EMBL:BC107156 IPI:IPI00004350 IPI:IPI00401787
            PIR:A49077 RefSeq:NP_056943.1 RefSeq:NP_963889.1 UniGene:Hs.592334
            ProteinModelPortal:P52655 SMR:P52655 IntAct:P52655 STRING:P52655
            PhosphoSite:P52655 DMDM:1711663 PRIDE:P52655 DNASU:2957
            Ensembl:ENST00000434192 Ensembl:ENST00000553612 GeneID:2957
            KEGG:hsa:2957 UCSC:uc001xvf.1 CTD:2957 GeneCards:GC14M081646
            HGNC:HGNC:4646 HPA:HPA000869 MIM:600520 neXtProt:NX_P52655
            PharmGKB:PA29033 HOGENOM:HOG000015236 HOVERGEN:HBG052771
            InParanoid:P52655 OMA:HMSATGM OrthoDB:EOG4TXBST PhylomeDB:P52655
            ChEMBL:CHEMBL4832 ChiTaRS:GTF2A1 EvolutionaryTrace:P52655
            GenomeRNAi:2957 NextBio:11720 PMAP-CutDB:P52655 ArrayExpress:P52655
            Bgee:P52655 Genevestigator:P52655 GermOnline:ENSG00000165417
            Uniprot:P52655
        Length = 376

 Score = 136 (52.9 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 28/50 (56%), Positives = 39/50 (78%)

Query:     1 MAGTPQSLTM-KLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKL 49
             MA +  + T+ KLY++VI DVIN+V++ F ++GVDEQVL ELK +WE KL
Sbjct:     1 MANSANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKL 50


>RGD|69246 [details] [associations]
            symbol:Gtf2a1 "general transcription factor IIA, 1" species:10116
           "Rattus norvegicus" [GO:0001103 "RNA polymerase II repressing
           transcription factor binding" evidence=ISO] [GO:0003677 "DNA
           binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
           [GO:0005672 "transcription factor TFIIA complex" evidence=IEA;ISO]
           [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006355 "regulation of
           transcription, DNA-dependent" evidence=IEA] [GO:0006366
           "transcription from RNA polymerase II promoter" evidence=ISO]
           [GO:0006367 "transcription initiation from RNA polymerase II
           promoter" evidence=IEA] [GO:0008134 "transcription factor binding"
           evidence=ISO] [GO:0017025 "TBP-class protein binding" evidence=ISO]
           [GO:0046982 "protein heterodimerization activity" evidence=ISO]
           InterPro:IPR004855 InterPro:IPR009083 InterPro:IPR009088
           InterPro:IPR013028 Pfam:PF03153 RGD:69246 GO:GO:0006355
           GO:GO:0003677 GO:GO:0006367 GeneTree:ENSGT00530000063152
           eggNOG:COG5149 GO:GO:0005672 Gene3D:2.30.18.10 SUPFAM:SSF50784
           SUPFAM:SSF47396 KO:K03122 Gene3D:1.10.287.100 PANTHER:PTHR12694
           CTD:2957 HOGENOM:HOG000015236 HOVERGEN:HBG052771 OMA:HMSATGM
           OrthoDB:EOG4TXBST EMBL:AF000943 IPI:IPI00197475 RefSeq:NP_071544.1
           UniGene:Rn.44436 ProteinModelPortal:O08949 SMR:O08949 STRING:O08949
           PhosphoSite:O08949 PRIDE:O08949 Ensembl:ENSRNOT00000005873
           GeneID:83830 KEGG:rno:83830 UCSC:RGD:69246 InParanoid:O08949
           NextBio:616464 ArrayExpress:O08949 Genevestigator:O08949
           GermOnline:ENSRNOG00000004300 Uniprot:O08949
        Length = 377

 Score = 136 (52.9 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 28/50 (56%), Positives = 39/50 (78%)

Query:     1 MAGTPQSLTM-KLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKL 49
             MA +  + T+ KLY++VI DVIN+V++ F ++GVDEQVL ELK +WE KL
Sbjct:     1 MANSANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKL 50


>MGI|MGI:1933277 [details] [associations]
            symbol:Gtf2a1 "general transcription factor II A, 1"
            species:10090 "Mus musculus" [GO:0001103 "RNA polymerase II
            repressing transcription factor binding" evidence=IPI] [GO:0003677
            "DNA binding" evidence=ISO] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005672
            "transcription factor TFIIA complex" evidence=ISO;IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=ISO]
            [GO:0006367 "transcription initiation from RNA polymerase II
            promoter" evidence=IEA] [GO:0008134 "transcription factor binding"
            evidence=ISO] [GO:0017025 "TBP-class protein binding" evidence=ISO]
            [GO:0046982 "protein heterodimerization activity" evidence=ISO]
            InterPro:IPR004855 InterPro:IPR009083 InterPro:IPR009088
            InterPro:IPR013028 Pfam:PF03153 MGI:MGI:1933277 GO:GO:0005737
            GO:GO:0006355 GO:GO:0006367 GeneTree:ENSGT00530000063152
            eggNOG:COG5149 GO:GO:0005672 Gene3D:2.30.18.10 SUPFAM:SSF50784
            SUPFAM:SSF47396 KO:K03122 Gene3D:1.10.287.100 PANTHER:PTHR12694
            CTD:2957 HOGENOM:HOG000015236 HOVERGEN:HBG052771 OMA:HMSATGM
            OrthoDB:EOG4TXBST EMBL:AF250834 EMBL:AK048711 IPI:IPI00121198
            RefSeq:NP_113568.2 RefSeq:NP_780544.1 UniGene:Mm.275728
            UniGene:Mm.432242 ProteinModelPortal:Q99PM3 SMR:Q99PM3
            MINT:MINT-1348159 STRING:Q99PM3 PhosphoSite:Q99PM3 PaxDb:Q99PM3
            PRIDE:Q99PM3 Ensembl:ENSMUST00000021345 GeneID:83602 KEGG:mmu:83602
            UCSC:uc007okr.2 InParanoid:Q99PM3 NextBio:350672 Bgee:Q99PM3
            CleanEx:MM_GTF2A1 Genevestigator:Q99PM3
            GermOnline:ENSMUSG00000020962 Uniprot:Q99PM3
        Length = 378

 Score = 136 (52.9 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 28/50 (56%), Positives = 39/50 (78%)

Query:     1 MAGTPQSLTM-KLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKL 49
             MA +  + T+ KLY++VI DVIN+V++ F ++GVDEQVL ELK +WE KL
Sbjct:     1 MANSANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKL 50


>CGD|CAL0003530 [details] [associations]
            symbol:orf19.2682 species:5476 "Candida albicans" [GO:0005672
            "transcription factor TFIIA complex" evidence=IEA] [GO:0005829
            "cytosol" evidence=IEA] [GO:0051123 "RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0001129
            "TBP-class protein binding RNA polymerase II transcription factor
            activity involved in preinitiation complex assembly" evidence=IEA]
            InterPro:IPR004855 InterPro:IPR009083 InterPro:IPR009088
            InterPro:IPR013028 Pfam:PF03153 CGD:CAL0003530 GO:GO:0006367
            EMBL:AACQ01000023 EMBL:AACQ01000025 eggNOG:COG5149 GO:GO:0005672
            Gene3D:2.30.18.10 SUPFAM:SSF50784 SUPFAM:SSF47396 KO:K03122
            Gene3D:1.10.287.100 PANTHER:PTHR12694 RefSeq:XP_720205.1
            RefSeq:XP_720435.1 ProteinModelPortal:Q5AFC5 SMR:Q5AFC5
            STRING:Q5AFC5 GeneID:3637926 GeneID:3638110 KEGG:cal:CaO19.10197
            KEGG:cal:CaO19.2682 Uniprot:Q5AFC5
        Length = 275

 Score = 132 (51.5 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 27/54 (50%), Positives = 36/54 (66%)

Query:     9 TMKLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKLFGIGVGKLSKRKE 62
             T KLY++VI DVIN+ ++ F+  G+DE  LQEL+ IW  KL   GV K S  +E
Sbjct:     6 TSKLYESVIEDVINDSRQDFENNGIDESTLQELRRIWCEKLTQSGVAKFSWDEE 59


>UNIPROTKB|F1MII0 [details] [associations]
            symbol:GTF2A1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0006367 "transcription initiation from RNA polymerase
            II promoter" evidence=IEA] [GO:0005672 "transcription factor TFIIA
            complex" evidence=IEA] InterPro:IPR004855 InterPro:IPR009083
            InterPro:IPR009088 InterPro:IPR013028 Pfam:PF03153 GO:GO:0003677
            GO:GO:0006367 GeneTree:ENSGT00530000063152 GO:GO:0005672
            Gene3D:2.30.18.10 SUPFAM:SSF50784 SUPFAM:SSF47396
            Gene3D:1.10.287.100 PANTHER:PTHR12694 OMA:HMSATGM EMBL:DAAA02029838
            EMBL:DAAA02029839 EMBL:DAAA02029840 IPI:IPI00704075
            Ensembl:ENSBTAT00000018145 Uniprot:F1MII0
        Length = 378

 Score = 133 (51.9 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 26/45 (57%), Positives = 34/45 (75%)

Query:     5 PQSLTMKLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKL 49
             P     KLY++VI DVIN+V++ F ++GVDEQVL ELK +WE KL
Sbjct:     8 PTKKKPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKL 52


>UNIPROTKB|J9NWE1 [details] [associations]
            symbol:GTF2A1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006367 "transcription initiation from RNA
            polymerase II promoter" evidence=IEA] [GO:0005672 "transcription
            factor TFIIA complex" evidence=IEA] InterPro:IPR004855
            InterPro:IPR009083 InterPro:IPR009088 InterPro:IPR013028
            Pfam:PF03153 GO:GO:0006367 GeneTree:ENSGT00530000063152
            GO:GO:0005672 Gene3D:2.30.18.10 SUPFAM:SSF50784 SUPFAM:SSF47396
            Gene3D:1.10.287.100 PANTHER:PTHR12694 OMA:HMSATGM EMBL:AAEX03005890
            Ensembl:ENSCAFT00000047079 Uniprot:J9NWE1
        Length = 392

 Score = 133 (51.9 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 26/42 (61%), Positives = 34/42 (80%)

Query:     8 LTMKLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKL 49
             L  KLY++VI DVIN+V++ F ++GVDEQVL ELK +WE KL
Sbjct:    25 LKPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKL 66


>UNIPROTKB|F1PJI5 [details] [associations]
            symbol:GTF2A1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006367 "transcription initiation from RNA
            polymerase II promoter" evidence=IEA] [GO:0005672 "transcription
            factor TFIIA complex" evidence=IEA] InterPro:IPR004855
            InterPro:IPR009083 InterPro:IPR009088 InterPro:IPR013028
            Pfam:PF03153 GO:GO:0003677 GO:GO:0006367
            GeneTree:ENSGT00530000063152 GO:GO:0005672 Gene3D:2.30.18.10
            SUPFAM:SSF50784 SUPFAM:SSF47396 Gene3D:1.10.287.100
            PANTHER:PTHR12694 EMBL:AAEX03005890 Ensembl:ENSCAFT00000027417
            Uniprot:F1PJI5
        Length = 376

 Score = 132 (51.5 bits), Expect = 4.5e-08, P = 4.5e-08
 Identities = 25/39 (64%), Positives = 33/39 (84%)

Query:    11 KLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKL 49
             KLY++VI DVIN+V++ F ++GVDEQVL ELK +WE KL
Sbjct:    12 KLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKL 50


>MGI|MGI:1919078 [details] [associations]
            symbol:Gtf2a1l "general transcription factor IIA, 1-like"
            species:10090 "Mus musculus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005672 "transcription
            factor TFIIA complex" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0006367 "transcription initiation
            from RNA polymerase II promoter" evidence=IEA] InterPro:IPR004855
            InterPro:IPR009083 InterPro:IPR009088 InterPro:IPR013028
            Pfam:PF03153 MGI:MGI:1919078 GO:GO:0005737 GO:GO:0006355
            GO:GO:0003677 GO:GO:0006367 GeneTree:ENSGT00530000063152
            eggNOG:COG5149 OrthoDB:EOG4D7Z4V GO:GO:0005672 Gene3D:2.30.18.10
            SUPFAM:SSF50784 SUPFAM:SSF47396 KO:K03122 Gene3D:1.10.287.100
            PANTHER:PTHR12694 HOGENOM:HOG000015236 HOVERGEN:HBG052771 CTD:11036
            EMBL:AF250835 EMBL:AF452125 EMBL:AK005881 EMBL:BC050756
            IPI:IPI00321094 RefSeq:NP_076119.2 UniGene:Mm.61330
            ProteinModelPortal:Q8R4I4 SMR:Q8R4I4 MINT:MINT-1348145
            STRING:Q8R4I4 PhosphoSite:Q8R4I4 PRIDE:Q8R4I4 DNASU:71828
            Ensembl:ENSMUST00000024970 GeneID:71828 KEGG:mmu:71828
            UCSC:uc008dvt.2 InParanoid:Q8R4I4 OMA:IRDADEN NextBio:334620
            Bgee:Q8R4I4 CleanEx:MM_GTF2A1L Genevestigator:Q8R4I4
            GermOnline:ENSMUSG00000024154 Uniprot:Q8R4I4
        Length = 468

 Score = 132 (51.5 bits), Expect = 6.6e-08, P = 6.6e-08
 Identities = 24/43 (55%), Positives = 34/43 (79%)

Query:     7 SLTMKLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKL 49
             +L  KLYQ+VI DVI  V++ F EEG++EQVL++LK +WE K+
Sbjct:     5 NLVPKLYQSVIEDVIEGVRDLFAEEGIEEQVLKDLKKLWETKV 47


>ZFIN|ZDB-GENE-030131-2694 [details] [associations]
            symbol:gtf2a1 "general transcription factor IIA,
            1" species:7955 "Danio rerio" [GO:0005672 "transcription factor
            TFIIA complex" evidence=IEA] [GO:0006367 "transcription initiation
            from RNA polymerase II promoter" evidence=IEA] InterPro:IPR004855
            InterPro:IPR009083 InterPro:IPR009088 InterPro:IPR013028
            Pfam:PF03153 ZFIN:ZDB-GENE-030131-2694 GO:GO:0006367 GO:GO:0005672
            Gene3D:2.30.18.10 SUPFAM:SSF50784 SUPFAM:SSF47396 HSSP:P52655
            KO:K03122 Gene3D:1.10.287.100 PANTHER:PTHR12694 CTD:2957
            HOVERGEN:HBG052771 EMBL:BC048894 IPI:IPI00490547 RefSeq:NP_997822.1
            UniGene:Dr.78440 ProteinModelPortal:Q7ZUK2 SMR:Q7ZUK2 STRING:Q7ZUK2
            GeneID:323974 KEGG:dre:323974 InParanoid:Q7ZUK2 NextBio:20808514
            ArrayExpress:Q7ZUK2 Uniprot:Q7ZUK2
        Length = 369

 Score = 130 (50.8 bits), Expect = 7.1e-08, P = 7.1e-08
 Identities = 28/50 (56%), Positives = 37/50 (74%)

Query:     1 MAGTPQSLTM-KLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKL 49
             MA +  S  + KLY++V+ DVI  V+E F +EGVDEQVL ELK +WE+KL
Sbjct:     1 MASSANSNQVPKLYRSVMEDVIAEVRELFLDEGVDEQVLMELKTLWESKL 50


>UNIPROTKB|F1MSE9 [details] [associations]
            symbol:GTF2A1L "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0006367 "transcription initiation from RNA polymerase
            II promoter" evidence=IEA] [GO:0005672 "transcription factor TFIIA
            complex" evidence=IEA] InterPro:IPR004855 InterPro:IPR009083
            InterPro:IPR009088 InterPro:IPR013028 Pfam:PF03153 GO:GO:0006367
            GeneTree:ENSGT00530000063152 GO:GO:0005672 Gene3D:2.30.18.10
            SUPFAM:SSF50784 SUPFAM:SSF47396 Gene3D:1.10.287.100
            PANTHER:PTHR12694 OMA:IRDADEN EMBL:DAAA02030760 IPI:IPI00696476
            UniGene:Bt.104044 Ensembl:ENSBTAT00000005456 Uniprot:F1MSE9
        Length = 388

 Score = 127 (49.8 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 23/39 (58%), Positives = 32/39 (82%)

Query:    11 KLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKL 49
             KLY++VI DVI  V++ F EEGV+EQVL++LK +WE K+
Sbjct:     9 KLYRSVIEDVIEGVRDLFAEEGVEEQVLKDLKQLWETKV 47


>RGD|1308625 [details] [associations]
            symbol:Gtf2a1l "general transcription factor IIA, 1-like"
            species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005672 "transcription factor TFIIA complex"
            evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006367
            "transcription initiation from RNA polymerase II promoter"
            evidence=IEA] InterPro:IPR004855 InterPro:IPR009083
            InterPro:IPR009088 InterPro:IPR013028 Pfam:PF03153 RGD:1308625
            GO:GO:0006367 EMBL:CH473947 GeneTree:ENSGT00530000063152
            eggNOG:COG5149 OrthoDB:EOG4D7Z4V GO:GO:0005672 Gene3D:2.30.18.10
            SUPFAM:SSF50784 SUPFAM:SSF47396 KO:K03122 Gene3D:1.10.287.100
            PANTHER:PTHR12694 HOGENOM:HOG000015236 HOVERGEN:HBG052771 CTD:11036
            OMA:IRDADEN EMBL:BC082104 IPI:IPI00363487 RefSeq:NP_001012136.1
            UniGene:Rn.201753 SMR:Q641W8 STRING:Q641W8
            Ensembl:ENSRNOT00000022380 GeneID:316711 KEGG:rno:316711
            UCSC:RGD:1308625 InParanoid:Q641W8 NextBio:671154
            Genevestigator:Q641W8 Uniprot:Q641W8
        Length = 468

 Score = 128 (50.1 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 23/43 (53%), Positives = 34/43 (79%)

Query:     7 SLTMKLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKL 49
             +L  KLY++VI DVI  V++ F EEG++EQVL++LK +WE K+
Sbjct:     5 NLVPKLYRSVIEDVIEGVRDLFAEEGIEEQVLKDLKKLWETKV 47


>UNIPROTKB|C9JJY0 [details] [associations]
            symbol:GTF2A1L "TFIIA-alpha and beta-like factor"
            species:9606 "Homo sapiens" [GO:0005672 "transcription factor TFIIA
            complex" evidence=IEA] [GO:0006367 "transcription initiation from
            RNA polymerase II promoter" evidence=IEA] InterPro:IPR004855
            InterPro:IPR009083 InterPro:IPR013028 Pfam:PF03153 GO:GO:0006367
            EMBL:AC073082 EMBL:AC087816 GO:GO:0005672 SUPFAM:SSF47396
            Gene3D:1.10.287.100 PANTHER:PTHR12694 HOGENOM:HOG000015236
            HGNC:HGNC:30727 IPI:IPI00332543 ProteinModelPortal:C9JJY0
            SMR:C9JJY0 STRING:C9JJY0 Ensembl:ENST00000437125
            ArrayExpress:C9JJY0 Bgee:C9JJY0 Uniprot:C9JJY0
        Length = 335

 Score = 124 (48.7 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 22/39 (56%), Positives = 31/39 (79%)

Query:    11 KLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKL 49
             KLY++VI DVI  V+  F EEG++EQVL++LK +WE K+
Sbjct:     9 KLYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKV 47


>UNIPROTKB|F1PKI8 [details] [associations]
            symbol:STON1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006367 "transcription initiation from RNA
            polymerase II promoter" evidence=IEA] [GO:0005672 "transcription
            factor TFIIA complex" evidence=IEA] InterPro:IPR004855
            InterPro:IPR009083 InterPro:IPR009088 InterPro:IPR013028
            Pfam:PF03153 GO:GO:0006367 GeneTree:ENSGT00530000063152
            GO:GO:0005672 Gene3D:2.30.18.10 SUPFAM:SSF50784 SUPFAM:SSF47396
            KO:K03122 Gene3D:1.10.287.100 PANTHER:PTHR12694 CTD:11036
            OMA:IRDADEN EMBL:AAEX03007508 RefSeq:NP_001191772.1
            Ensembl:ENSCAFT00000004251 GeneID:100534007 KEGG:cfa:100534007
            Uniprot:F1PKI8
        Length = 476

 Score = 126 (49.4 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 22/39 (56%), Positives = 32/39 (82%)

Query:    11 KLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKL 49
             KLY++VI DVI  V++ F EEG++EQVL++LK +WE K+
Sbjct:     9 KLYRSVIEDVIEGVRDLFAEEGIEEQVLKDLKQLWETKV 47


>SGD|S000005720 [details] [associations]
            symbol:TOA1 "TFIIA large subunit" species:4932 "Saccharomyces
            cerevisiae" [GO:0001129 "TBP-class protein binding RNA polymerase
            II transcription factor activity involved in preinitiation complex
            assembly" evidence=IGI;IDA] [GO:0051123 "RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IGI;IDA]
            [GO:0017025 "TBP-class protein binding" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006367 "transcription initiation from RNA polymerase II
            promoter" evidence=IEA;IDA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0005672 "transcription factor
            TFIIA complex" evidence=IEA;IDA] InterPro:IPR004855
            InterPro:IPR009083 InterPro:IPR009088 InterPro:IPR013028
            Pfam:PF03153 SGD:S000005720 GO:GO:0005737 EMBL:BK006948
            GO:GO:0051123 GeneTree:ENSGT00530000063152 eggNOG:COG5149
            GO:GO:0005672 Gene3D:2.30.18.10 SUPFAM:SSF50784 SUPFAM:SSF47396
            PDB:1NH2 PDB:1RM1 PDB:1YTF PDBsum:1NH2 PDBsum:1RM1 PDBsum:1YTF
            KO:K03122 Gene3D:1.10.287.100 PANTHER:PTHR12694 OrthoDB:EOG4QG0PR
            EMBL:M85248 EMBL:Z75102 EMBL:AY693223 PIR:B41810 RefSeq:NP_014837.1
            DisProt:DP00104 ProteinModelPortal:P32773 SMR:P32773 DIP:DIP-2347N
            IntAct:P32773 MINT:MINT-503105 STRING:P32773 PaxDb:P32773
            PeptideAtlas:P32773 EnsemblFungi:YOR194C GeneID:854369
            KEGG:sce:YOR194C CYGD:YOR194c HOGENOM:HOG000246665 OMA:DSRQDFE
            EvolutionaryTrace:P32773 NextBio:976493 Genevestigator:P32773
            GermOnline:YOR194C Uniprot:P32773
        Length = 286

 Score = 122 (48.0 bits), Expect = 3.1e-07, P = 3.1e-07
 Identities = 27/74 (36%), Positives = 45/74 (60%)

Query:    11 KLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKLFGIGVGKLSKRKEWMSKCYRS 70
             ++Y+ ++  V+N V+E F+  G+DEQ LQ+LK+IW+ KL    V   S    W ++ +  
Sbjct:     8 RVYEIIVESVVNEVREDFENAGIDEQTLQDLKNIWQKKLTETKVTTFS----WDNQ-FNE 62

Query:    71 SNISG-RPSLSGNL 83
              NI+G +  L+ NL
Sbjct:    63 GNINGVQNDLNFNL 76


>UNIPROTKB|J3KNC0 [details] [associations]
            symbol:GTF2A1 "Transcription initiation factor IIA beta
            chain" species:9606 "Homo sapiens" [GO:0005672 "transcription
            factor TFIIA complex" evidence=IEA] [GO:0006367 "transcription
            initiation from RNA polymerase II promoter" evidence=IEA]
            InterPro:IPR004855 InterPro:IPR009083 InterPro:IPR013028
            Pfam:PF03153 GO:GO:0006367 EMBL:AL136040 GO:GO:0005672
            SUPFAM:SSF47396 Gene3D:1.10.287.100 PANTHER:PTHR12694
            HGNC:HGNC:4646 ChiTaRS:GTF2A1 ProteinModelPortal:J3KNC0
            Ensembl:ENST00000298173 Uniprot:J3KNC0
        Length = 59

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 25/45 (55%), Positives = 35/45 (77%)

Query:     1 MAGTPQSLTM-KLYQAVIADVINNVKEAFQEEGVDEQVLQELKHI 44
             MA +  + T+ KLY++VI DVIN+V++ F ++GVDEQVL ELK I
Sbjct:     1 MANSANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTI 45


>UNIPROTKB|Q9UNN4 [details] [associations]
            symbol:GTF2A1L "TFIIA-alpha and beta-like factor"
            species:9606 "Homo sapiens" [GO:0005672 "transcription factor TFIIA
            complex" evidence=IEA] [GO:0006367 "transcription initiation from
            RNA polymerase II promoter" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003713 "transcription coactivator
            activity" evidence=TAS] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=TAS] InterPro:IPR004855
            InterPro:IPR009083 InterPro:IPR009088 InterPro:IPR013028
            Pfam:PF03153 GO:GO:0006355 GO:GO:0003677 GO:GO:0003713
            GO:GO:0006366 GO:GO:0006367 EMBL:AF026169 UniGene:Hs.732016
            eggNOG:COG5149 GermOnline:ENSG00000068781 GO:GO:0005672
            Gene3D:2.30.18.10 SUPFAM:SSF50784 SUPFAM:SSF47396 KO:K03122
            Gene3D:1.10.287.100 PANTHER:PTHR12694 HOGENOM:HOG000015236
            HOVERGEN:HBG052771 EMBL:AF106857 EMBL:AK223350 EMBL:AK302220
            EMBL:BC025991 EMBL:BC064585 IPI:IPI00009269 IPI:IPI00893167
            RefSeq:NP_001180416.1 RefSeq:NP_006863.2 ProteinModelPortal:Q9UNN4
            SMR:Q9UNN4 STRING:Q9UNN4 PhosphoSite:Q9UNN4 DMDM:13124585
            PaxDb:Q9UNN4 PRIDE:Q9UNN4 Ensembl:ENST00000403751
            Ensembl:ENST00000430487 GeneID:11036 KEGG:hsa:11036 UCSC:uc002rws.2
            UCSC:uc010yom.2 CTD:11036 GeneCards:GC02P048844 HGNC:HGNC:30727
            MIM:605358 neXtProt:NX_Q9UNN4 PharmGKB:PA162390383 GenomeRNAi:11036
            NextBio:41940 ArrayExpress:Q9UNN4 Bgee:Q9UNN4 CleanEx:HS_GTF2A1L
            Genevestigator:Q9UNN4 Uniprot:Q9UNN4
        Length = 478

 Score = 124 (48.7 bits), Expect = 5.0e-07, P = 5.0e-07
 Identities = 22/39 (56%), Positives = 31/39 (79%)

Query:    11 KLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKL 49
             KLY++VI DVI  V+  F EEG++EQVL++LK +WE K+
Sbjct:     9 KLYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKV 47


>UNIPROTKB|E2R3X3 [details] [associations]
            symbol:STON1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0030131 "clathrin adaptor complex"
            evidence=IEA] [GO:0006897 "endocytosis" evidence=IEA] [GO:0006886
            "intracellular protein transport" evidence=IEA] [GO:0006367
            "transcription initiation from RNA polymerase II promoter"
            evidence=IEA] [GO:0005672 "transcription factor TFIIA complex"
            evidence=IEA] InterPro:IPR004855 InterPro:IPR008968
            InterPro:IPR009083 InterPro:IPR012320 InterPro:IPR013028
            Pfam:PF00928 Pfam:PF03153 PROSITE:PS51070 PROSITE:PS51072
            GO:GO:0006886 GO:GO:0006897 GO:GO:0006367 GO:GO:0030131
            SUPFAM:SSF49447 GeneTree:ENSGT00530000063152 InterPro:IPR017110
            PIRSF:PIRSF037099 GO:GO:0005672 SUPFAM:SSF47396 Gene3D:1.10.287.100
            EMBL:AAEX03007508 Ensembl:ENSCAFT00000004253 Uniprot:E2R3X3
        Length = 982

 Score = 126 (49.4 bits), Expect = 8.0e-07, P = 8.0e-07
 Identities = 22/39 (56%), Positives = 32/39 (82%)

Query:    11 KLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKL 49
             KLY++VI DVI  V++ F EEG++EQVL++LK +WE K+
Sbjct:   713 KLYRSVIEDVIEGVRDLFAEEGIEEQVLKDLKQLWETKV 751


>UNIPROTKB|Q53S48 [details] [associations]
            symbol:ALF "Putative uncharacterized protein ALF"
            species:9606 "Homo sapiens" [GO:0005672 "transcription factor TFIIA
            complex" evidence=IEA] [GO:0006367 "transcription initiation from
            RNA polymerase II promoter" evidence=IEA] [GO:0006886
            "intracellular protein transport" evidence=IEA] [GO:0006897
            "endocytosis" evidence=IEA] [GO:0030131 "clathrin adaptor complex"
            evidence=IEA] InterPro:IPR004855 InterPro:IPR008968
            InterPro:IPR009083 InterPro:IPR009088 InterPro:IPR012320
            InterPro:IPR013028 Pfam:PF00928 Pfam:PF03153 PROSITE:PS51070
            PROSITE:PS51072 GO:GO:0006886 GO:GO:0006897 GO:GO:0006367
            GO:GO:0030131 SUPFAM:SSF49447 EMBL:AC073082 EMBL:AC087816
            EMBL:AC091788 UniGene:Hs.732016 GO:GO:0005672 Gene3D:2.30.18.10
            SUPFAM:SSF50784 SUPFAM:SSF47396 Gene3D:1.10.287.100 IPI:IPI00337314
            RefSeq:NP_758515.1 SMR:Q53S48 STRING:Q53S48 Ensembl:ENST00000309827
            Ensembl:ENST00000394754 Ensembl:ENST00000405008 GeneID:286749
            KEGG:hsa:286749 UCSC:uc002rwp.2 CTD:286749 HGNC:HGNC:30651
            PharmGKB:PA162405016 HOVERGEN:HBG054132 OMA:CKLELGS
            GenomeRNAi:286749 NextBio:96286 Uniprot:Q53S48
        Length = 1182

 Score = 124 (48.7 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 22/39 (56%), Positives = 31/39 (79%)

Query:    11 KLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKL 49
             KLY++VI DVI  V+  F EEG++EQVL++LK +WE K+
Sbjct:   713 KLYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKV 751


>UNIPROTKB|E1BRM0 [details] [associations]
            symbol:STON1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0005672 "transcription factor TFIIA complex"
            evidence=IEA] [GO:0006367 "transcription initiation from RNA
            polymerase II promoter" evidence=IEA] [GO:0006886 "intracellular
            protein transport" evidence=IEA] [GO:0006897 "endocytosis"
            evidence=IEA] [GO:0030131 "clathrin adaptor complex" evidence=IEA]
            InterPro:IPR004855 InterPro:IPR008968 InterPro:IPR009083
            InterPro:IPR009088 InterPro:IPR012320 InterPro:IPR013028
            Pfam:PF00928 Pfam:PF03153 PROSITE:PS51070 PROSITE:PS51072
            GO:GO:0006886 GO:GO:0006897 GO:GO:0006367 GO:GO:0030131
            SUPFAM:SSF49447 GeneTree:ENSGT00530000063152 GO:GO:0005672
            Gene3D:2.30.18.10 SUPFAM:SSF50784 SUPFAM:SSF47396
            Gene3D:1.10.287.100 OMA:CKLELGS EMBL:AADN02036286 IPI:IPI00572948
            Ensembl:ENSGALT00000014803 Uniprot:E1BRM0
        Length = 1194

 Score = 120 (47.3 bits), Expect = 4.4e-06, P = 4.4e-06
 Identities = 22/39 (56%), Positives = 31/39 (79%)

Query:    11 KLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKL 49
             KLY++VI DVI +++  F EEGVD+QVL+ LK +WE K+
Sbjct:   710 KLYKSVIEDVIESIQGLFAEEGVDKQVLRNLKELWETKV 748


>ZFIN|ZDB-GENE-060929-28 [details] [associations]
            symbol:zgc:154100 "zgc:154100" species:7955 "Danio
            rerio" [GO:0030131 "clathrin adaptor complex" evidence=IEA]
            [GO:0005672 "transcription factor TFIIA complex" evidence=IEA]
            [GO:0006367 "transcription initiation from RNA polymerase II
            promoter" evidence=IEA] [GO:0006886 "intracellular protein
            transport" evidence=IEA] [GO:0006897 "endocytosis" evidence=IEA]
            [GO:0016192 "vesicle-mediated transport" evidence=IEA]
            InterPro:IPR004855 InterPro:IPR008968 InterPro:IPR009083
            InterPro:IPR009088 InterPro:IPR012320 InterPro:IPR013028
            Pfam:PF00928 Pfam:PF03153 PROSITE:PS51070 PROSITE:PS51072
            ZFIN:ZDB-GENE-060929-28 GO:GO:0006886 GO:GO:0006897 GO:GO:0006367
            GO:GO:0030131 SUPFAM:SSF49447 GeneTree:ENSGT00530000063152
            GO:GO:0005672 Gene3D:2.30.18.10 SUPFAM:SSF50784 SUPFAM:SSF47396
            Gene3D:1.10.287.100 PANTHER:PTHR12694 EMBL:FP102515 IPI:IPI00994361
            Ensembl:ENSDART00000093247 Bgee:F1R8F7 Uniprot:F1R8F7
        Length = 917

 Score = 113 (44.8 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 21/40 (52%), Positives = 33/40 (82%)

Query:    11 KLYQAVIADVINNVKEAFQEEGVDEQVLQELKH-IWEAKL 49
             KLY +VI DV+ +V+E FQ+EGV+E+VL+ L+  +WE+K+
Sbjct:   468 KLYLSVIEDVLESVRELFQDEGVEERVLEHLRQQLWESKV 507


>WB|WBGene00004136 [details] [associations]
            symbol:pqn-51 species:6239 "Caenorhabditis elegans"
            [GO:0005672 "transcription factor TFIIA complex" evidence=IEA]
            [GO:0006367 "transcription initiation from RNA polymerase II
            promoter" evidence=IEA] [GO:0009792 "embryo development ending in
            birth or egg hatching" evidence=IMP] InterPro:IPR004855
            InterPro:IPR009083 InterPro:IPR009088 InterPro:IPR013028
            Pfam:PF03153 GO:GO:0009792 GO:GO:0006367
            GeneTree:ENSGT00530000063152 eggNOG:COG5149 GO:GO:0005672
            Gene3D:2.30.18.10 SUPFAM:SSF50784 SUPFAM:SSF47396 HSSP:P52655
            KO:K03122 Gene3D:1.10.287.100 PANTHER:PTHR12694 OMA:DGIMHID
            EMBL:FO080527 PIR:T32660 RefSeq:NP_504355.1
            ProteinModelPortal:O44625 SMR:O44625 STRING:O44625 PaxDb:O44625
            EnsemblMetazoa:K11D12.2.1 EnsemblMetazoa:K11D12.2.2
            EnsemblMetazoa:K11D12.2.3 EnsemblMetazoa:K11D12.2.4 GeneID:178893
            KEGG:cel:CELE_K11D12.2 UCSC:K11D12.2.1 CTD:178893 WormBase:K11D12.2
            HOGENOM:HOG000018626 InParanoid:O44625 NextBio:903012
            Uniprot:O44625
        Length = 354

 Score = 107 (42.7 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 21/43 (48%), Positives = 31/43 (72%)

Query:    11 KLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKLFGIG 53
             +LY++V+ADVI N+KEAF +E +D  VL +L+  WE K+   G
Sbjct:     9 ELYKSVMADVIANMKEAFLDENIDVDVLSQLRKEWEDKVNSSG 51


>POMBASE|SPBC28F2.09 [details] [associations]
            symbol:toa1 "transcription factor TFIIA complex large
            subunit Toa1 (predicted)" species:4896 "Schizosaccharomyces pombe"
            [GO:0000991 "core RNA polymerase II binding transcription factor
            activity" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005672 "transcription factor TFIIA complex" evidence=ISO]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0006367 "transcription
            initiation from RNA polymerase II promoter" evidence=ISO]
            InterPro:IPR004855 InterPro:IPR009083 InterPro:IPR009088
            InterPro:IPR013028 Pfam:PF03153 PomBase:SPBC28F2.09 GO:GO:0005829
            EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0006367 GO:GO:0000991
            eggNOG:COG5149 GO:GO:0005672 Gene3D:2.30.18.10 SUPFAM:SSF50784
            SUPFAM:SSF47396 KO:K03122 Gene3D:1.10.287.100 PANTHER:PTHR12694
            OMA:QEMKQVW PIR:T40052 RefSeq:NP_595670.1 HSSP:P32773
            ProteinModelPortal:Q9USU9 STRING:Q9USU9 EnsemblFungi:SPBC28F2.09.1
            GeneID:2540632 KEGG:spo:SPBC28F2.09 OrthoDB:EOG4QG0PR
            NextBio:20801757 Uniprot:Q9USU9
        Length = 369

 Score = 105 (42.0 bits), Expect = 3.7e-05, P = 3.7e-05
 Identities = 20/48 (41%), Positives = 32/48 (66%)

Query:     7 SLTMKLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKLFGIGV 54
             S+  ++Y  VI DVI N +  F+E GVD+  L+EL+++W++KL    V
Sbjct:     4 SIVGEVYHHVILDVIANSRSDFEENGVDDATLRELQNLWQSKLVATDV 51


>TAIR|locus:2025027 [details] [associations]
            symbol:AT1G07470 "AT1G07470" species:3702 "Arabidopsis
            thaliana" [GO:0003700 "sequence-specific DNA binding transcription
            factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0005672 "transcription factor TFIIA complex" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=ISS]
            [GO:0006367 "transcription initiation from RNA polymerase II
            promoter" evidence=IEA] InterPro:IPR004855 InterPro:IPR009083
            InterPro:IPR009088 InterPro:IPR013028 Pfam:PF03153 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0003743 GO:GO:0006367 GO:GO:0005672
            Gene3D:2.30.18.10 SUPFAM:SSF50784 SUPFAM:SSF47396 KO:K03122
            Gene3D:1.10.287.100 PANTHER:PTHR12694 HSSP:P32773 UniGene:At.20059
            UniGene:At.48163 HOGENOM:HOG000241323 ProtClustDB:CLSN2687717
            EMBL:AY039987 EMBL:AY049254 EMBL:AF424559 EMBL:AY085902
            EMBL:AY133802 EMBL:AY463597 IPI:IPI00539823 RefSeq:NP_563790.1
            UniGene:At.67184 UniGene:At.75320 ProteinModelPortal:Q93VP4
            SMR:Q93VP4 STRING:Q93VP4 PRIDE:Q93VP4 EnsemblPlants:AT1G07470.1
            GeneID:837259 KEGG:ath:AT1G07470 TAIR:At1g07470 InParanoid:Q93VP4
            OMA:SYQGPNE PhylomeDB:Q93VP4 ArrayExpress:Q93VP4
            Genevestigator:Q93VP4 Uniprot:Q93VP4
        Length = 375

 Score = 96 (38.9 bits), Expect = 0.00036, P = 0.00036
 Identities = 24/53 (45%), Positives = 30/53 (56%)

Query:     3 GTPQSLTMKLYQAVIADVINNVKEAF-QEEGVDEQVLQELKHIWEAKLFGIGV 54
             GT  + T  +Y  VI DV+N V+E F    G  E VL EL+ IWE K+   GV
Sbjct:     2 GTTTT-TSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGV 53


>TAIR|locus:2024977 [details] [associations]
            symbol:AT1G07480 "AT1G07480" species:3702 "Arabidopsis
            thaliana" [GO:0003700 "sequence-specific DNA binding transcription
            factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0005672 "transcription factor TFIIA complex" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=ISS]
            [GO:0006367 "transcription initiation from RNA polymerase II
            promoter" evidence=IEA] InterPro:IPR004855 InterPro:IPR009083
            InterPro:IPR009088 InterPro:IPR013028 Pfam:PF03153 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0006367 eggNOG:COG5149
            GO:GO:0005672 Gene3D:2.30.18.10 SUPFAM:SSF50784 SUPFAM:SSF47396
            KO:K03122 Gene3D:1.10.287.100 PANTHER:PTHR12694 HSSP:P32773
            EMBL:AY463627 EMBL:AK316911 EMBL:AB493439 EMBL:AJ223635
            IPI:IPI00542934 PIR:T51333 RefSeq:NP_172228.3 RefSeq:NP_850937.1
            UniGene:At.20059 UniGene:At.48163 UniGene:At.72731
            ProteinModelPortal:O49349 SMR:O49349 STRING:O49349 PRIDE:O49349
            EnsemblPlants:AT1G07480.1 EnsemblPlants:AT1G07480.2 GeneID:837262
            KEGG:ath:AT1G07480 TAIR:At1g07480 HOGENOM:HOG000241323
            InParanoid:O49349 OMA:DSSGHYQ PhylomeDB:O49349
            ProtClustDB:CLSN2687717 Genevestigator:O49349 Uniprot:O49349
        Length = 375

 Score = 96 (38.9 bits), Expect = 0.00036, P = 0.00036
 Identities = 24/53 (45%), Positives = 30/53 (56%)

Query:     3 GTPQSLTMKLYQAVIADVINNVKEAF-QEEGVDEQVLQELKHIWEAKLFGIGV 54
             GT  + T  +Y  VI DV+N V+E F    G  E VL EL+ IWE K+   GV
Sbjct:     2 GTTTT-TSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGV 53


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      123       123   0.00091  102 3  11 22  0.37    31
                                                     29  0.50    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  26
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  135 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  12.63u 0.11s 12.74t   Elapsed:  00:00:10
  Total cpu time:  12.63u 0.11s 12.74t   Elapsed:  00:00:11
  Start:  Thu Aug 15 12:11:27 2013   End:  Thu Aug 15 12:11:38 2013

the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with TfIIA-L TfIIA-L TfIIA-L Transcription factor IIA L	protein from Drosophila melanogaster	9.7e-10
BLAST match view associations BLAST with GTF2A1 GTF2A1 GTF2A1 Transcription initiation factor IIA subunit 1	protein from Homo sapiens	1.6e-08
BLAST match view associations BLAST with Gtf2a1 Gtf2a1 Gtf2a1 general transcription factor IIA, 1	gene from Rattus norvegicus	1.6e-08
BLAST match view associations BLAST with Gtf2a1 Gtf2a1 Gtf2a1 general transcription factor II A, 1	protein from Mus musculus	1.7e-08
BLAST match view associations BLAST with orf19.2682 orf19.2682 orf19.2682	gene_product from Candida albicans	2.2e-08
BLAST match view associations BLAST with GTF2A1 GTF2A1 GTF2A1 Uncharacterized protein	protein from Bos taurus	3.5e-08
BLAST match view associations BLAST with GTF2A1 GTF2A1 GTF2A1 Uncharacterized protein	protein from Canis lupus familiaris	3.8e-08
BLAST match view associations BLAST with GTF2A1 GTF2A1 GTF2A1 Uncharacterized protein	protein from Canis lupus familiaris	4.5e-08
BLAST match view associations BLAST with Gtf2a1l Gtf2a1l Gtf2a1l general transcription factor IIA, 1-like	protein from Mus musculus	6.6e-08
BLAST match view associations BLAST with gtf2a1 gtf2a1 gtf2a1 general transcription factor IIA, 1	gene_product from Danio rerio	7.1e-08
BLAST match view associations BLAST with GTF2A1L GTF2A1L GTF2A1L Uncharacterized protein	protein from Bos taurus	1.7e-07
BLAST match view associations BLAST with Gtf2a1l Gtf2a1l Gtf2a1l general transcription factor IIA, 1-like	gene from Rattus norvegicus	1.8e-07
BLAST match view associations BLAST with GTF2A1L GTF2A1L GTF2A1L TFIIA-alpha and beta-like factor	protein from Homo sapiens	2.7e-07
BLAST match view associations BLAST with STON1 STON1 STON1 Uncharacterized protein	protein from Canis lupus familiaris	3.0e-07
BLAST match view associations BLAST with TOA1 TOA1 TOA1 TFIIA large subunit	gene from Saccharomyces cerevisiae	3.1e-07
BLAST match view associations BLAST with GTF2A1 GTF2A1 GTF2A1 Transcription initiation factor IIA beta chain	protein from Homo sapiens	4.8e-07
BLAST match view associations BLAST with GTF2A1L GTF2A1L GTF2A1L TFIIA-alpha and beta-like factor	protein from Homo sapiens	5.0e-07
BLAST match view associations BLAST with STON1 STON1 STON1 Uncharacterized protein	protein from Canis lupus familiaris	8.0e-07
BLAST match view associations BLAST with ALF ALF ALF Protein STON1-GTF2A1L	protein from Homo sapiens	1.6e-06
BLAST match view associations BLAST with STON1 STON1 STON1 Uncharacterized protein	protein from Gallus gallus	4.4e-06
BLAST match view associations BLAST with zgc:154100 zgc:154100 zgc:154100	gene_product from Danio rerio	1.8e-05
BLAST match view associations BLAST with pqn-51 pqn-51 pqn-51	gene from Caenorhabditis elegans	2.1e-05
BLAST match view associations BLAST with AT1G07470 AT1G07470 AT1G07470	protein from Arabidopsis thaliana	0.00036
BLAST match view associations BLAST with AT1G07480 AT1G07480 AT1G07480	protein from Arabidopsis thaliana	0.00036