RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1283
(123 letters)
>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 43
Score = 70.8 bits (174), Expect = 1e-18
Identities = 25/41 (60%), Positives = 33/41 (80%)
Query: 9 TMKLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKL 49
KLY++VI DVIN+V++ F ++GVDEQVL ELK +WE KL
Sbjct: 2 VPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKL 42
>d1nh2b_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 46
Score = 69.0 bits (169), Expect = 7e-18
Identities = 18/43 (41%), Positives = 31/43 (72%)
Query: 7 SLTMKLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKL 49
+ ++Y+ ++ V+N V+E F+ G+DEQ LQ+LK+IW+ KL
Sbjct: 2 AEASRVYEIIVESVVNEVREDFENAGIDEQTLQDLKNIWQKKL 44
>d1hvca_ b.50.1.1 (A:) Human immunodeficiency virus type 1 protease
{Human immunodeficiency virus type 1 [TaxId: 11676]}
Length = 203
Score = 26.8 bits (60), Expect = 0.55
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 2 AGTPQSLTMKLYQAVIADVINNVKEAFQEEGVDEQVLQE--LKHIWEAKLFGIGVGKLSK 59
+ PQ + V + +KEA + G D+ VL+E L W+ K+ G G+G K
Sbjct: 102 SSGPQITLWQR-PLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIG-GIGGFIK 159
Query: 60 RKEW 63
+++
Sbjct: 160 VRQY 163
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia
coli [TaxId: 562]}
Length = 294
Score = 27.0 bits (59), Expect = 0.57
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 30 EEGV-----DEQVLQELKHIWEAK-LFGIGVGKLSKRKEW 63
E V + LQ+ + G+GK SKRK W
Sbjct: 255 EHNVGHLYKAPETLQKFYRENDPTNSMNPGIGKTSKRKNW 294
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1449
Score = 26.0 bits (56), Expect = 1.4
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 2 AGTPQSLTMKLYQAVIADVINNVKEAFQEEGV-----DEQVLQELKHIWEAKLFGIGVGK 56
G Q K ++ + +E E++L KHI +G +
Sbjct: 166 CGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNE 225
Query: 57 LSKRKEWM 64
+ R EWM
Sbjct: 226 VFSRPEWM 233
>d1nqka_ c.1.16.4 (A:) Alkanesulfonate monooxygenase SsuD
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 25.8 bits (55), Expect = 1.5
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 13/49 (26%)
Query: 3 GTPQSLTMKLYQAVIADVINNVKEAFQEEGVDEQVLQELKHIWEAKLFG 51
G + +A I + G+D VL H+ EA G
Sbjct: 307 GDGPT---------VAARI----NEYAALGIDSFVLSGYPHLEEAYRVG 342
>d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 266
Score = 25.6 bits (56), Expect = 1.6
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 15 AVI----ADVINNVKEAFQEEGVDEQVLQELK 42
AVI D I + + +G+D+ + +
Sbjct: 234 AVISLKDVDSIYKIPGLLKSQGLDDYICKRFS 265
>d1iwpb_ c.51.3.1 (B:) Diol dehydratase, beta subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 184
Score = 25.2 bits (55), Expect = 2.1
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 17 IADVINNVKEAFQEEGVDEQVLQELKHI------WEA-KLFGIGVG 55
++ + +EEG+ +V++ L+ W+A L G G+G
Sbjct: 41 HGAILKELIAGVEEEGLHARVVRILRTSDVSFMAWDAANLSGSGIG 86
>d1p8kz1 d.95.2.1 (Z:1-125) DNA endonuclease I-AniI {Aspergillus
nidulans [TaxId: 162425]}
Length = 125
Score = 24.9 bits (54), Expect = 2.3
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 34 DEQVLQELKHIWEAKLFGIGVGKLSKRKEWMSKCYRSSNIS 74
D Q++ ++K + GIG+ KR E R + +
Sbjct: 40 DVQLIYKIKK-----ILGIGIVSFRKRNEIEMVALRIRDKN 75
>d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein
MscS (YggB), C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 101
Score = 24.2 bits (52), Expect = 3.0
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 13 YQAVIADVINNVKEAFQEEGVD 34
Q V DV+ +K F G+
Sbjct: 67 LQNVYWDVLERIKREFDAAGIS 88
>d1eexb_ c.51.3.1 (B:) Diol dehydratase, beta subunit {Klebsiella
oxytoca [TaxId: 571]}
Length = 178
Score = 24.4 bits (53), Expect = 4.1
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 17 IADVINNVKEAFQEEGVDEQVLQELKHI------WEA-KLFGIGVG 55
++ V +EEG+ +V++ K E +L G G+
Sbjct: 39 HKSILREVIAGIEEEGIKARVIRCFKSSDVAFVAVEGNRLSGSGIS 84
>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A
MoaA {Staphylococcus aureus [TaxId: 1280]}
Length = 327
Score = 24.0 bits (50), Expect = 6.0
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 23 NVKEAFQEEGVDEQVLQELKHIWEAK 48
NVK + DE++ ++ K +W+ +
Sbjct: 285 NVKAFIRSGVTDEELKEQFKALWQIR 310
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.383
Gapped
Lambda K H
0.267 0.0551 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 441,173
Number of extensions: 18060
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 13
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.3 bits)