BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12830
(94 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242011218|ref|XP_002426352.1| DNA-directed RNA polymerase II 33 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212510429|gb|EEB13614.1| DNA-directed RNA polymerase II 33 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 275
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/29 (96%), Positives = 29/29 (100%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSVHITDLTDENVKFQ+EDTELS
Sbjct: 1 MPYANQPSVHITDLTDENVKFQIEDTELS 29
>gi|332017912|gb|EGI58566.1| DNA-directed RNA polymerase II subunit RPB3 [Acromyrmex
echinatior]
Length = 256
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/29 (93%), Positives = 29/29 (100%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSVHI+DLT+ENVKFQVEDTELS
Sbjct: 1 MPYANQPSVHISDLTEENVKFQVEDTELS 29
>gi|322793846|gb|EFZ17186.1| hypothetical protein SINV_07940 [Solenopsis invicta]
Length = 325
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/29 (93%), Positives = 29/29 (100%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSVHI+DLT+ENVKFQVEDTELS
Sbjct: 1 MPYANQPSVHISDLTEENVKFQVEDTELS 29
>gi|66517558|ref|XP_624836.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Apis
mellifera]
gi|380029804|ref|XP_003698555.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Apis
florea]
Length = 276
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/29 (93%), Positives = 29/29 (100%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSVHI+DLT+ENVKFQVEDTELS
Sbjct: 1 MPYANQPSVHISDLTEENVKFQVEDTELS 29
>gi|350400985|ref|XP_003486021.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Bombus impatiens]
Length = 276
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/29 (93%), Positives = 29/29 (100%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSVHI+DLT+ENVKFQVEDTELS
Sbjct: 1 MPYANQPSVHISDLTEENVKFQVEDTELS 29
>gi|383848177|ref|XP_003699728.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Megachile rotundata]
Length = 276
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/29 (93%), Positives = 29/29 (100%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSVHI+DLT+ENVKFQVEDTELS
Sbjct: 1 MPYANQPSVHISDLTEENVKFQVEDTELS 29
>gi|307175611|gb|EFN65520.1| DNA-directed RNA polymerase II subunit RPB3 [Camponotus
floridanus]
Length = 276
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/29 (93%), Positives = 29/29 (100%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSVHI+DLT+ENVKFQVEDTELS
Sbjct: 1 MPYANQPSVHISDLTEENVKFQVEDTELS 29
>gi|332376707|gb|AEE63493.1| unknown [Dendroctonus ponderosae]
Length = 275
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/29 (93%), Positives = 28/29 (96%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSVHITDLTDENVKF VEDT+LS
Sbjct: 1 MPYANQPSVHITDLTDENVKFYVEDTDLS 29
>gi|91094813|ref|XP_970635.1| PREDICTED: similar to DNA-directed RNA polymerase II subunit
[Tribolium castaneum]
gi|270006567|gb|EFA03015.1| hypothetical protein TcasGA2_TC010438 [Tribolium castaneum]
Length = 274
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 28/29 (96%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSVHITDLTD+NVKF +EDT+LS
Sbjct: 1 MPYANQPSVHITDLTDDNVKFYIEDTDLS 29
>gi|114051193|ref|NP_001040388.1| DNA-directed RNA polymerase II polypeptide [Bombyx mori]
gi|95102714|gb|ABF51298.1| DNA-directed RNA polymerase II polypeptide [Bombyx mori]
Length = 275
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/29 (89%), Positives = 28/29 (96%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSVHIT+L+DENVKF VEDTELS
Sbjct: 1 MPYANQPSVHITELSDENVKFVVEDTELS 29
>gi|357630064|gb|EHJ78455.1| DNA-directed RNA polymerase II polypeptide [Danaus plexippus]
Length = 275
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/29 (89%), Positives = 28/29 (96%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSVHIT+LTD+NVKF VEDTELS
Sbjct: 1 MPYANQPSVHITELTDDNVKFVVEDTELS 29
>gi|156551093|ref|XP_001603079.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Nasonia vitripennis]
Length = 276
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 29/29 (100%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+VHI++LT+EN+KFQVEDTELS
Sbjct: 1 MPYANQPTVHISELTEENIKFQVEDTELS 29
>gi|307202125|gb|EFN81625.1| DNA-directed RNA polymerase II subunit RPB3 [Harpegnathos
saltator]
Length = 276
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/29 (89%), Positives = 28/29 (96%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSVHI+DLT+ENVKFQVE TELS
Sbjct: 1 MPYANQPSVHISDLTEENVKFQVEYTELS 29
>gi|427778021|gb|JAA54462.1| Putative rna polymerase ii subunit polr2c/rpb3 [Rhipicephalus
pulchellus]
Length = 324
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/29 (86%), Positives = 28/29 (96%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSVHI++LTDENVKF VEDT+LS
Sbjct: 1 MPYANQPSVHISELTDENVKFFVEDTDLS 29
>gi|427778887|gb|JAA54895.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 250
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 28/29 (96%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSVHI++LTDENVKF VEDT+LS
Sbjct: 1 MPYANQPSVHISELTDENVKFFVEDTDLS 29
>gi|427778091|gb|JAA54497.1| Putative rna polymerase ii subunit polr2c/rpb3 [Rhipicephalus
pulchellus]
Length = 268
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 28/29 (96%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSVHI++LTDENVKF VEDT+LS
Sbjct: 1 MPYANQPSVHISELTDENVKFFVEDTDLS 29
>gi|241853662|ref|XP_002415909.1| RNA polymerase II, subunit POLR2C/RPB3, putative [Ixodes
scapularis]
gi|215510123|gb|EEC19576.1| RNA polymerase II, subunit POLR2C/RPB3, putative [Ixodes
scapularis]
Length = 274
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 28/29 (96%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSVHI++LTDENVKF VEDT+LS
Sbjct: 1 MPYANQPSVHISELTDENVKFFVEDTDLS 29
>gi|346471307|gb|AEO35498.1| hypothetical protein [Amblyomma maculatum]
Length = 274
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 28/29 (96%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSVHI++LTDENVKF VEDT+LS
Sbjct: 1 MPYANQPSVHISELTDENVKFFVEDTDLS 29
>gi|427787879|gb|JAA59391.1| Putative rna polymerase ii subunit polr2c/rpb3 [Rhipicephalus
pulchellus]
Length = 274
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 28/29 (96%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSVHI++LTDENVKF VEDT+LS
Sbjct: 1 MPYANQPSVHISELTDENVKFFVEDTDLS 29
>gi|40645083|dbj|BAD06460.1| homologue of DNA-directed RNA polymerase II subunit [Antheraea
pernyi]
gi|40645085|dbj|BAD06461.1| homologue of DNA-directed RNA polymerase II subunit [Antheraea
pernyi]
Length = 275
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSVHIT+L D+NVKF VEDTELS
Sbjct: 1 MPYANQPSVHITELNDDNVKFVVEDTELS 29
>gi|194761112|ref|XP_001962776.1| GF19666 [Drosophila ananassae]
gi|190616473|gb|EDV31997.1| GF19666 [Drosophila ananassae]
Length = 125
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSV IT+LTD+NVKF +EDTELS
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELS 29
>gi|194860382|ref|XP_001969570.1| GG23887 [Drosophila erecta]
gi|190661437|gb|EDV58629.1| GG23887 [Drosophila erecta]
Length = 117
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSV IT+LTD+NVKF +EDTELS
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELS 29
>gi|25012925|gb|AAN71549.1| RH25219p [Drosophila melanogaster]
Length = 117
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSV IT+LTD+NVKF +EDTELS
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELS 29
>gi|157119713|ref|XP_001659470.1| DNA-directed RNA polymerase II subunit [Aedes aegypti]
gi|108875224|gb|EAT39449.1| AAEL008755-PA [Aedes aegypti]
Length = 275
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSV IT+LTDENVKF VEDT+LS
Sbjct: 1 MPYANQPSVTITELTDENVKFVVEDTDLS 29
>gi|312378871|gb|EFR25321.1| hypothetical protein AND_09454 [Anopheles darlingi]
Length = 273
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSV I++LTDENVKF VEDTELS
Sbjct: 1 MPYANQPSVTISELTDENVKFVVEDTELS 29
>gi|260799989|ref|XP_002594919.1| hypothetical protein BRAFLDRAFT_277672 [Branchiostoma floridae]
gi|229280157|gb|EEN50930.1| hypothetical protein BRAFLDRAFT_277672 [Branchiostoma floridae]
Length = 275
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/29 (75%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP VH+T+L+DENVKF +EDT+LS
Sbjct: 1 MPYANQPQVHLTELSDENVKFVIEDTDLS 29
>gi|195472723|ref|XP_002088649.1| GE18688 [Drosophila yakuba]
gi|194174750|gb|EDW88361.1| GE18688 [Drosophila yakuba]
Length = 275
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSV IT+LTD+NVKF +EDTELS
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELS 29
>gi|58391045|ref|XP_318245.2| AGAP010321-PA [Anopheles gambiae str. PEST]
gi|55236782|gb|EAA13388.2| AGAP010321-PA [Anopheles gambiae str. PEST]
Length = 273
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSV I++LTDENVKF VEDTELS
Sbjct: 1 MPYANQPSVTISELTDENVKFIVEDTELS 29
>gi|195579088|ref|XP_002079394.1| GD23930 [Drosophila simulans]
gi|194191403|gb|EDX04979.1| GD23930 [Drosophila simulans]
Length = 275
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSV IT+LTD+NVKF +EDTELS
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELS 29
>gi|17137650|ref|NP_477419.1| RNA polymerase II 33kD subunit [Drosophila melanogaster]
gi|4490379|emb|CAB38635.1| RNA polymerase II p33 subunit [Drosophila melanogaster]
gi|7298103|gb|AAF53342.1| RNA polymerase II 33kD subunit [Drosophila melanogaster]
gi|16767948|gb|AAL28192.1| GH07456p [Drosophila melanogaster]
gi|220944002|gb|ACL84544.1| RpII33-PA [synthetic construct]
gi|220953902|gb|ACL89494.1| RpII33-PA [synthetic construct]
Length = 275
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSV IT+LTD+NVKF +EDTELS
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELS 29
>gi|195338303|ref|XP_002035764.1| GM15286 [Drosophila sechellia]
gi|194129644|gb|EDW51687.1| GM15286 [Drosophila sechellia]
Length = 275
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSV IT+LTD+NVKF +EDTELS
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELS 29
>gi|195031522|ref|XP_001988351.1| GH11119 [Drosophila grimshawi]
gi|195115860|ref|XP_002002474.1| GI12561 [Drosophila mojavensis]
gi|195397712|ref|XP_002057472.1| GJ18149 [Drosophila virilis]
gi|193904351|gb|EDW03218.1| GH11119 [Drosophila grimshawi]
gi|193913049|gb|EDW11916.1| GI12561 [Drosophila mojavensis]
gi|194141126|gb|EDW57545.1| GJ18149 [Drosophila virilis]
Length = 275
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSV IT+LTD+NVKF +EDTELS
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELS 29
>gi|195433589|ref|XP_002064793.1| GK15011 [Drosophila willistoni]
gi|194160878|gb|EDW75779.1| GK15011 [Drosophila willistoni]
Length = 275
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSV IT+LTD+NVKF +EDTELS
Sbjct: 1 MPYANQPSVQITELTDDNVKFILEDTELS 29
>gi|242247264|ref|NP_001156090.1| DNA-directed RNA polymerase II polypeptide-like [Acyrthosiphon
pisum]
gi|239789163|dbj|BAH71223.1| ACYPI001769 [Acyrthosiphon pisum]
Length = 273
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 28/29 (96%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSVHI++LT +++KFQ+EDT+LS
Sbjct: 1 MPYANQPSVHISELTTDSIKFQIEDTDLS 29
>gi|125984946|ref|XP_001356237.1| GA20659 [Drosophila pseudoobscura pseudoobscura]
gi|195164762|ref|XP_002023215.1| GL21238 [Drosophila persimilis]
gi|54644558|gb|EAL33299.1| GA20659 [Drosophila pseudoobscura pseudoobscura]
gi|194105300|gb|EDW27343.1| GL21238 [Drosophila persimilis]
Length = 275
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTD+NVKF +EDTELS
Sbjct: 1 MPYANQPNVQITELTDDNVKFVLEDTELS 29
>gi|441597761|ref|XP_004093284.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB3 [Nomascus leucogenys]
Length = 258
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 16/64 (25%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSKRTNGNWKENMEWKGLSAQLLLCSRPSFLFA 60
MPYANQP+V IT+LTDENVKF +E+T+L+ N L A+L +C F
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLALXVN-----------LMAKLHVC-----FFH 44
Query: 61 FLCI 64
FL I
Sbjct: 45 FLAI 48
>gi|291242309|ref|XP_002741050.1| PREDICTED: DNA directed RNA polymerase II polypeptide C-like
[Saccoglossus kowalevskii]
Length = 275
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSV +++L+D+NVKF VEDT+LS
Sbjct: 1 MPYANQPSVRLSELSDDNVKFSVEDTDLS 29
>gi|444725635|gb|ELW66196.1| DNA-directed RNA polymerase II subunit RPB3 [Tupaia chinensis]
Length = 707
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 433 MPYANQPTVRITELTDENVKFIIENTDLA 461
>gi|45360897|ref|NP_989124.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Xenopus
(Silurana) tropicalis]
gi|38511942|gb|AAH61444.1| polymerase (RNA) II (DNA directed) polypeptide C [Xenopus
(Silurana) tropicalis]
gi|89266865|emb|CAJ83921.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Xenopus
(Silurana) tropicalis]
gi|111598412|gb|AAH80362.1| polymerase (RNA) II (DNA directed) polypeptide C [Xenopus
(Silurana) tropicalis]
Length = 275
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/29 (75%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF VE+T+L+
Sbjct: 1 MPYANQPTVRITELTDENVKFIVENTDLA 29
>gi|432119373|gb|ELK38451.1| DNA-directed RNA polymerase II subunit RPB3 [Myotis davidii]
Length = 275
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/29 (75%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF VE+T+L+
Sbjct: 1 MPYANQPTVRITELTDENVKFIVENTDLA 29
>gi|221043080|dbj|BAH13217.1| unnamed protein product [Homo sapiens]
Length = 424
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLA 29
>gi|67970900|dbj|BAE01792.1| unnamed protein product [Macaca fascicularis]
Length = 251
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLA 29
>gi|395506009|ref|XP_003757328.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 2
[Sarcophilus harrisii]
Length = 252
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLA 29
>gi|344289201|ref|XP_003416333.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Loxodonta africana]
Length = 275
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLA 29
>gi|337497|gb|AAA36586.1| RNA polymerase subunit hRPB 33 [Homo sapiens]
gi|2920709|emb|CAA11842.1| RNA polymerase II subunit [Homo sapiens]
gi|2920711|emb|CAA11843.1| RNA polymerase subunit [Homo sapiens]
Length = 275
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLA 29
>gi|14702171|ref|NP_116558.1| DNA-directed RNA polymerase II subunit RPB3 [Homo sapiens]
gi|384475805|ref|NP_001245048.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|114662810|ref|XP_001148305.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 1
[Pan troglodytes]
gi|296231192|ref|XP_002761051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3
[Callithrix jacchus]
gi|297698834|ref|XP_002826511.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Pongo
abelii]
gi|397506549|ref|XP_003823789.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Pan
paniscus]
gi|402908526|ref|XP_003916990.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Papio
anubis]
gi|403306002|ref|XP_003943535.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Saimiri
boliviensis boliviensis]
gi|426382315|ref|XP_004057753.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Gorilla
gorilla gorilla]
gi|3915850|sp|P19387.2|RPB3_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA
polymerase II 33 kDa polypeptide; Short=RPB33; AltName:
Full=DNA-directed RNA polymerase II subunit C; AltName:
Full=RPB31
gi|2266931|gb|AAC14355.1| RNA polymerase II subunit hRPB33 [Homo sapiens]
gi|3252823|gb|AAC24309.1| RNA polymerase II subunit hRPB33 [Homo sapiens]
gi|12653281|gb|AAH00409.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Homo
sapiens]
gi|13111973|gb|AAH03159.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Homo
sapiens]
gi|20380436|gb|AAH28157.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Homo
sapiens]
gi|49457035|emb|CAG46838.1| POLR2C [Homo sapiens]
gi|60823189|gb|AAX36635.1| polymerase II polypeptide C [synthetic construct]
gi|90079489|dbj|BAE89424.1| unnamed protein product [Macaca fascicularis]
gi|119603332|gb|EAW82926.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|119603333|gb|EAW82927.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|119603335|gb|EAW82929.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|119603336|gb|EAW82930.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|123981016|gb|ABM82337.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa
[synthetic construct]
gi|123995821|gb|ABM85512.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa
[synthetic construct]
gi|157928942|gb|ABW03756.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa
[synthetic construct]
gi|158259685|dbj|BAF85801.1| unnamed protein product [Homo sapiens]
gi|208967078|dbj|BAG73553.1| polymerase (RNA) II (DNA directed) polypeptide C [synthetic
construct]
gi|355710235|gb|EHH31699.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|355756811|gb|EHH60419.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca fascicularis]
gi|383419311|gb|AFH32869.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|384947770|gb|AFI37490.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|410206970|gb|JAA00704.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
gi|410264222|gb|JAA20077.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
gi|410307460|gb|JAA32330.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
gi|410331907|gb|JAA34900.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
Length = 275
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLA 29
>gi|348503818|ref|XP_003439459.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Oreochromis niloticus]
Length = 275
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVKITELTDENVKFVIENTDLA 29
>gi|291390190|ref|XP_002711589.1| PREDICTED: DNA directed RNA polymerase II polypeptide C
[Oryctolagus cuniculus]
Length = 275
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLA 29
>gi|335289326|ref|XP_003355849.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Sus
scrofa]
Length = 275
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLA 29
>gi|77735375|ref|NP_001029384.1| DNA-directed RNA polymerase II subunit RPB3 [Bos taurus]
gi|73949776|ref|XP_535283.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 1
[Canis lupus familiaris]
gi|149699174|ref|XP_001494261.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
isoform 1 [Equus caballus]
gi|301752940|ref|XP_002912312.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Ailuropoda melanoleuca]
gi|348572668|ref|XP_003472114.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Cavia porcellus]
gi|426242429|ref|XP_004015075.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Ovis
aries]
gi|122146160|sp|Q3T0Q3.1|RPB3_BOVIN RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA
polymerase II subunit C
gi|74268238|gb|AAI02302.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Bos
taurus]
gi|152941118|gb|ABS44996.1| DNA directed RNA polymerase II polypeptide C [Bos taurus]
gi|281346645|gb|EFB22229.1| hypothetical protein PANDA_000038 [Ailuropoda melanoleuca]
gi|296477912|tpg|DAA20027.1| TPA: DNA-directed RNA polymerase II subunit RPB3 [Bos taurus]
gi|351697739|gb|EHB00658.1| DNA-directed RNA polymerase II subunit RPB3 [Heterocephalus
glaber]
gi|417398216|gb|JAA46141.1| Putative rna polymerase ii subunit polr2c/rpb3 [Desmodus
rotundus]
gi|440902632|gb|ELR53402.1| DNA-directed RNA polymerase II subunit RPB3 [Bos grunniens mutus]
Length = 275
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLA 29
>gi|410907303|ref|XP_003967131.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Takifugu rubripes]
Length = 275
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVKITELTDENVKFVIENTDLA 29
>gi|395839490|ref|XP_003792622.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Otolemur
garnettii]
Length = 275
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLA 29
>gi|126296213|ref|XP_001365715.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Monodelphis domestica]
Length = 275
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLA 29
>gi|432862447|ref|XP_004069860.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Oryzias latipes]
Length = 275
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVKITELTDENVKFVIENTDLA 29
>gi|50753469|ref|XP_414001.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Gallus
gallus]
Length = 275
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLA 29
>gi|395506007|ref|XP_003757327.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 1
[Sarcophilus harrisii]
Length = 275
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLA 29
>gi|47221930|emb|CAF98942.1| unnamed protein product [Tetraodon nigroviridis]
Length = 275
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVKITELTDENVKFVIENTDLA 29
>gi|221040824|dbj|BAH12113.1| unnamed protein product [Homo sapiens]
Length = 155
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLA 29
>gi|350539355|ref|NP_001232142.1| putative DNA directed RNA polymerase II polypeptide C
[Taeniopygia guttata]
gi|197127827|gb|ACH44325.1| putative DNA directed RNA polymerase II polypeptide C
[Taeniopygia guttata]
Length = 275
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLA 29
>gi|209730678|gb|ACI66208.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
Length = 275
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/29 (75%), Positives = 26/29 (89%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP V IT+LTDENVKF +E+T+LS
Sbjct: 1 MPYANQPIVKITELTDENVKFVIENTDLS 29
>gi|225716034|gb|ACO13863.1| DNA-directed RNA polymerase II subunit RPB3 [Esox lucius]
Length = 275
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/29 (75%), Positives = 26/29 (89%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP V IT+LTDENVKF +E+T+LS
Sbjct: 1 MPYANQPIVKITELTDENVKFVIENTDLS 29
>gi|218931178|ref|NP_001135345.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
gi|209734758|gb|ACI68248.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
gi|223647266|gb|ACN10391.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
gi|223673145|gb|ACN12754.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
Length = 275
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/29 (75%), Positives = 26/29 (89%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP V IT+LTDENVKF +E+T+LS
Sbjct: 1 MPYANQPIVKITELTDENVKFVIENTDLS 29
>gi|391329125|ref|XP_003739027.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Metaseiulus occidentalis]
Length = 277
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/29 (75%), Positives = 26/29 (89%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP V ITDL++ENVKF +EDT+LS
Sbjct: 1 MPYANQPRVTITDLSNENVKFVLEDTDLS 29
>gi|148234336|ref|NP_001084998.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Xenopus
laevis]
gi|47682270|gb|AAH70601.1| MGC81245 protein [Xenopus laevis]
Length = 275
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V +T+LTDENVKF VE+T+L+
Sbjct: 1 MPYANQPTVRLTELTDENVKFIVENTDLA 29
>gi|149032427|gb|EDL87318.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_c
[Rattus norvegicus]
Length = 92
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LT+ENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTEENVKFIIENTDLA 29
>gi|327287828|ref|XP_003228630.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Anolis carolinensis]
Length = 275
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+L+DENVKF VE+T+L+
Sbjct: 1 MPYANQPTVRITELSDENVKFIVENTDLA 29
>gi|198422271|ref|XP_002119444.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 2 [Ciona intestinalis]
gi|198422273|ref|XP_002119542.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 3 [Ciona intestinalis]
gi|198422275|ref|XP_002119306.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 1 [Ciona intestinalis]
Length = 277
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MP+ANQP+V IT+LT++NVKF VEDT+LS
Sbjct: 1 MPFANQPTVSITELTEDNVKFVVEDTDLS 29
>gi|321475674|gb|EFX86636.1| hypothetical protein DAPPUDRAFT_313021 [Daphnia pulex]
Length = 274
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP++ +T+LT+ENVKFQ+ DT+LS
Sbjct: 1 MPYANQPNLKLTELTEENVKFQISDTDLS 29
>gi|225707818|gb|ACO09755.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Osmerus
mordax]
Length = 275
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+L+DENVKF +E+T+L+
Sbjct: 1 MPYANQPTVKITELSDENVKFVIENTDLA 29
>gi|269784633|ref|NP_001161428.1| DNA-directed RNA polymerase II subunit RPB3 [Danio rerio]
gi|28278474|gb|AAH46047.1| Polymerase (RNA) II (DNA directed) polypeptide C [Danio rerio]
Length = 275
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+L+DENVKF +E+T+L+
Sbjct: 1 MPYANQPTVKITELSDENVKFVIENTDLA 29
>gi|149032428|gb|EDL87319.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_d
[Rattus norvegicus]
Length = 165
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LT+ENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTEENVKFIIENTDLA 29
>gi|2829844|sp|P97760.1|RPB3_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA
polymerase II 33 kDa polypeptide; Short=RPB33; AltName:
Full=DNA-directed RNA polymerase II subunit C; AltName:
Full=RPB31
gi|1850789|dbj|BAA12205.1| the third largest RNA polymerase II subunit [Mus musculus]
Length = 275
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LT+ENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTEENVKFIIENTDLA 29
>gi|12837765|dbj|BAB23943.1| unnamed protein product [Mus musculus]
Length = 275
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LT+ENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTEENVKFIIENTDLA 29
>gi|29336059|ref|NP_033116.2| DNA-directed RNA polymerase II subunit RPB3 [Mus musculus]
gi|60223073|ref|NP_001012491.1| DNA-directed RNA polymerase II subunit RPB3 [Rattus norvegicus]
gi|354495470|ref|XP_003509853.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Cricetulus griseus]
gi|12805131|gb|AAH02023.1| Polymerase (RNA) II (DNA directed) polypeptide C [Mus musculus]
gi|59808391|gb|AAH89905.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Rattus
norvegicus]
gi|68534485|gb|AAH99548.1| Polymerase (RNA) II (DNA directed) polypeptide C [Mus musculus]
gi|74145092|dbj|BAE27415.1| unnamed protein product [Mus musculus]
gi|74191349|dbj|BAE30257.1| unnamed protein product [Mus musculus]
gi|74213568|dbj|BAE35592.1| unnamed protein product [Mus musculus]
gi|149032426|gb|EDL87317.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_b
[Rattus norvegicus]
gi|344256627|gb|EGW12731.1| DNA-directed RNA polymerase II subunit RPB3 [Cricetulus griseus]
Length = 275
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LT+ENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTEENVKFIIENTDLA 29
>gi|74202237|dbj|BAE23500.1| unnamed protein product [Mus musculus]
Length = 332
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LT+ENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTEENVKFIIENTDLA 29
>gi|149032425|gb|EDL87316.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_a
[Rattus norvegicus]
Length = 241
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LT+ENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTEENVKFIIENTDLA 29
>gi|387018210|gb|AFJ51223.1| DNA-directed RNA polymerase II subunit RPB3-like [Crotalus
adamanteus]
Length = 275
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+L+D+NVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELSDDNVKFIIENTDLA 29
>gi|355712722|gb|AES04444.1| polymerase II polypeptide C, 33kDa [Mustela putorius furo]
Length = 273
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 26/28 (92%)
Query: 2 PYANQPSVHITDLTDENVKFQVEDTELS 29
PYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 PYANQPTVRITELTDENVKFIIENTDLA 28
>gi|225714130|gb|ACO12911.1| DNA-directed RNA polymerase II subunit RPB3 [Lepeophtheirus
salmonis]
Length = 279
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPS++IT+LT++ VKF +EDT+LS
Sbjct: 1 MPYANQPSINITELTEDLVKFTLEDTDLS 29
>gi|156371210|ref|XP_001628658.1| predicted protein [Nematostella vectensis]
gi|156215640|gb|EDO36595.1| predicted protein [Nematostella vectensis]
Length = 274
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 24/29 (82%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSV I +LTDENVKF +E T +S
Sbjct: 1 MPYANQPSVKILELTDENVKFIIEKTGMS 29
>gi|444726969|gb|ELW67479.1| DNA-directed RNA polymerase II subunit RPB3 [Tupaia chinensis]
Length = 77
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELSKRTNGNWK 37
MP+ NQP+V IT+LTDE+VKF +E+ +L+ N W+
Sbjct: 2 MPFVNQPTVRITELTDESVKFIIENADLAM-ANSIWR 37
>gi|443691223|gb|ELT93136.1| hypothetical protein CAPTEDRAFT_155833 [Capitella teleta]
Length = 270
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 25/29 (86%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYAN+P+V IT+ T EN+KF +EDT+LS
Sbjct: 1 MPYANKPTVRITESTSENLKFILEDTDLS 29
>gi|312083749|ref|XP_003143992.1| DNA-directed RNA polymerase II polypeptide [Loa loa]
gi|307760845|gb|EFO20079.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Loa loa]
Length = 275
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP V IT L DE V+F +EDT+LS
Sbjct: 1 MPYANQPHVAITALNDEIVRFVLEDTDLS 29
>gi|170581298|ref|XP_001895623.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Brugia malayi]
gi|158597360|gb|EDP35528.1| DNA-directed RNA polymerase II 33 kDa polypeptide, putative
[Brugia malayi]
Length = 275
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP V IT L DE V+F +EDT+LS
Sbjct: 1 MPYANQPHVAITALNDEIVRFVLEDTDLS 29
>gi|402590881|gb|EJW84811.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Wuchereria bancrofti]
Length = 275
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP V IT L DE V+F +EDT+LS
Sbjct: 1 MPYANQPHVAITALNDEIVRFVLEDTDLS 29
>gi|196004242|ref|XP_002111988.1| hypothetical protein TRIADDRAFT_24132 [Trichoplax adhaerens]
gi|190585887|gb|EDV25955.1| hypothetical protein TRIADDRAFT_24132 [Trichoplax adhaerens]
Length = 274
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 25/29 (86%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYA+QP V I DLT+ENVKF +E+T+LS
Sbjct: 1 MPYASQPRVTIPDLTNENVKFILENTDLS 29
>gi|313232341|emb|CBY09450.1| unnamed protein product [Oikopleura dioica]
Length = 164
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP V I ++ DEN KF +E+T+LS
Sbjct: 1 MPYANQPIVRIEEIKDENCKFSIENTDLS 29
>gi|324521335|gb|ADY47834.1| DNA-directed RNA polymerase II subunit RPB3 [Ascaris suum]
Length = 275
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP V I+ L DE VKF +EDT+LS
Sbjct: 1 MPYANQPRVTISMLNDEMVKFVLEDTDLS 29
>gi|340372125|ref|XP_003384595.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Amphimedon queenslandica]
Length = 274
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYA P V ++++TDENVKF +E T+LS
Sbjct: 1 MPYAKNPLVKVSEITDENVKFIIERTDLS 29
>gi|432098388|gb|ELK28188.1| DNA-directed RNA polymerase II subunit RPB3 [Myotis davidii]
Length = 303
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 24/26 (92%)
Query: 4 ANQPSVHITDLTDENVKFQVEDTELS 29
+NQP+V IT+LTDENVKF VE+T+L+
Sbjct: 72 SNQPTVRITELTDENVKFIVENTDLA 97
>gi|256089309|ref|XP_002580754.1| DNA-directed rna polymerase II subunit [Schistosoma mansoni]
gi|350646602|emb|CCD58722.1| DNA-directed rna polymerase II subunit,putative [Schistosoma
mansoni]
Length = 266
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP V +T +EN+KF +E+T+LS
Sbjct: 1 MPYANQPIVTLTSFNNENIKFVLEETDLS 29
>gi|226490156|emb|CAX69320.1| DNA-directed RNA polymerase II subunit C [Schistosoma japonicum]
Length = 266
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP V +T +EN+KF +E+T+LS
Sbjct: 1 MPYANQPIVTLTSFNNENIKFVLEETDLS 29
>gi|268566109|ref|XP_002639637.1| C. briggsae CBR-RPB-3 protein [Caenorhabditis briggsae]
Length = 280
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 25/29 (86%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP++ +T+LT++ +KF + DT+LS
Sbjct: 1 MPYANQPNIEVTELTNDLIKFVLWDTDLS 29
>gi|86560996|ref|NP_492361.2| Protein RPB-3 [Caenorhabditis elegans]
gi|74834695|emb|CAB02268.2| Protein RPB-3 [Caenorhabditis elegans]
Length = 282
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 25/29 (86%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP++ +T+LT++ +KF + DT+LS
Sbjct: 1 MPYANQPNIEVTELTNDIIKFVLWDTDLS 29
>gi|449692874|ref|XP_004213207.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like,
partial [Hydra magnipapillata]
Length = 131
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYA+QP V I + TD+N+KF +E+T+LS
Sbjct: 1 MPYASQPRVKILEWTDDNLKFILENTDLS 29
>gi|221114057|ref|XP_002158521.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Hydra magnipapillata]
Length = 273
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYA+QP V I + TD+N+KF +E+T+LS
Sbjct: 1 MPYASQPRVKILEWTDDNLKFILENTDLS 29
>gi|341882009|gb|EGT37944.1| hypothetical protein CAEBREN_16087 [Caenorhabditis brenneri]
gi|341882040|gb|EGT37975.1| hypothetical protein CAEBREN_14407 [Caenorhabditis brenneri]
Length = 281
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 25/29 (86%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V +T+L+++ +KF + DT+LS
Sbjct: 1 MPYANQPNVEVTELSNDLIKFVLWDTDLS 29
>gi|358341556|dbj|GAA27309.2| DNA-directed RNA polymerase II subunit RPB3 [Clonorchis sinensis]
Length = 266
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP V +T +EN KF +E+T+LS
Sbjct: 1 MPYANQPIVTLTSYNNENCKFIIEETDLS 29
>gi|308499659|ref|XP_003112015.1| CRE-RPB-3 protein [Caenorhabditis remanei]
gi|308268496|gb|EFP12449.1| CRE-RPB-3 protein [Caenorhabditis remanei]
Length = 297
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 25/29 (86%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP++ +T+L+++ +KF + DT+LS
Sbjct: 1 MPYANQPNIEVTELSNDLMKFVLWDTDLS 29
>gi|320166369|gb|EFW43268.1| polymerase II polypeptide C [Capsaspora owczarzaki ATCC 30864]
Length = 270
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MP+A+QP V I +LT +NV+F + TELS
Sbjct: 1 MPFASQPVVQILELTPDNVRFVLSKTELS 29
>gi|340719719|ref|XP_003398295.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Bombus terrestris]
Length = 273
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/17 (94%), Positives = 17/17 (100%)
Query: 13 DLTDENVKFQVEDTELS 29
DLT+ENVKFQVEDTELS
Sbjct: 10 DLTEENVKFQVEDTELS 26
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.132 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,510,548,234
Number of Sequences: 23463169
Number of extensions: 49336705
Number of successful extensions: 99159
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99058
Number of HSP's gapped (non-prelim): 101
length of query: 94
length of database: 8,064,228,071
effective HSP length: 64
effective length of query: 30
effective length of database: 6,562,585,255
effective search space: 196877557650
effective search space used: 196877557650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)