Query psy12830
Match_columns 94
No_of_seqs 108 out of 173
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 20:56:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12830.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12830hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_C DNA-directed RNA polyme 99.7 3.2E-19 1.1E-23 140.1 1.2 67 4-75 2-75 (297)
2 2pa8_D DNA-directed RNA polyme 99.7 7.7E-19 2.6E-23 132.7 2.2 64 7-75 1-71 (265)
3 1twf_C B44.5, DNA-directed RNA 99.7 7.4E-19 2.5E-23 138.5 0.4 68 4-76 3-77 (318)
4 1bdf_A RNA polymerase alpha su 98.9 7.2E-10 2.5E-14 83.8 2.8 54 6-73 10-75 (235)
5 2a6h_A DNA-directed RNA polyme 98.8 2.4E-09 8.2E-14 84.3 3.5 42 6-47 8-60 (315)
6 3lu0_A DNA-directed RNA polyme 98.3 2.8E-07 9.5E-12 73.3 2.1 49 8-63 13-72 (329)
7 2pa8_L DNA-directed RNA polyme 90.6 0.16 5.6E-06 33.2 2.6 31 7-37 1-31 (92)
8 1xpp_A TA1416, DNA-directed RN 87.7 0.47 1.6E-05 32.6 3.3 42 4-45 8-50 (115)
9 1twf_K B13.6, DNA-directed RNA 75.4 2 6.9E-05 29.4 2.8 41 4-44 16-57 (120)
10 4goj_C Protein UNC-119 homolog 37.8 88 0.003 24.1 6.2 78 8-85 90-186 (240)
11 3k9o_B Ubiquitin, UBB+1; E2-25 35.5 35 0.0012 20.4 3.0 85 6-92 1-93 (96)
12 3gqq_A Protein UNC-119 homolog 32.5 1.5E+02 0.005 22.2 6.5 78 8-85 45-141 (195)
13 3h0g_K DNA-directed RNA polyme 24.9 54 0.0018 22.4 2.8 30 8-37 19-48 (123)
14 1tif_A IF3-N, translation init 24.4 32 0.0011 22.0 1.4 38 7-50 14-53 (78)
No 1
>3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.73 E-value=3.2e-19 Score=140.12 Aligned_cols=67 Identities=12% Similarity=0.228 Sum_probs=59.7
Q ss_pred CCCCeEEEeecCCceEEEEEccCCchhhhcceee-------EEeeeEEEeecccccCCcccceeeeeeeccceeccccc
Q psy12830 4 ANQPSVHITDLTDENVKFQVEDTELSKRTNGNWK-------ENMEWKGLSAQLLLCSRPSFLFAFLCIYENRLALSQTG 75 (94)
Q Consensus 4 ~~qP~V~I~eLtd~~vkFiL~ntDlS~ANaLRRi-------lAID~V~I~~NTSVL~d~~~~~~fl~~~~~~~~l~~t~ 75 (94)
.++|+|+|.++++++++|+|+|+|+++||||||+ +|||.|.|+.|||||+| |||+||++.||+-+..
T Consensus 2 ~~~p~I~i~~~~~~~~~F~l~g~~~tiaNALRRiLLSeVPt~AI~~V~I~~NtSvl~D-----E~laHrlglIP~v~ed 75 (297)
T 3h0g_C 2 DSETHITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPD-----EFLAHRLGMIPLDSSN 75 (297)
T ss_dssp --CCSBCCCCBCSSEEEEEECSCCHHHHHHHHHHHHSSCCEEEEEEEEEEEECSSSCH-----HHHHHHHHHSCBCCTT
T ss_pred CCCCeEEEEEccCCEEEEEEECCChhHHHHHHHHHHHcCccceEEEEEEEeCCccccc-----cceeeeeccCCccccc
Confidence 4689999999999999999999999999999999 99999999999999999 7777777777776543
No 2
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=99.72 E-value=7.7e-19 Score=132.70 Aligned_cols=64 Identities=8% Similarity=-0.063 Sum_probs=57.9
Q ss_pred CeEEEeecCCceEEEEEccCCchhhhcceee-------EEeeeEEEeecccccCCcccceeeeeeeccceeccccc
Q psy12830 7 PSVHITDLTDENVKFQVEDTELSKRTNGNWK-------ENMEWKGLSAQLLLCSRPSFLFAFLCIYENRLALSQTG 75 (94)
Q Consensus 7 P~V~I~eLtd~~vkFiL~ntDlS~ANaLRRi-------lAID~V~I~~NTSVL~d~~~~~~fl~~~~~~~~l~~t~ 75 (94)
|+|+|.++++++++|+|+|.+.++||||||+ +|||.|+|+.|||||+| |||+||.+.||+-+..
T Consensus 1 ~~i~i~~~~~~~~~f~l~g~~~t~~NalRRills~vp~~AI~~V~i~~Ntsvl~D-----E~v~Hr~~~Ip~~~ed 71 (265)
T 2pa8_D 1 MSINLLHKDDTRIDLVFEGYPLEFVNAIRRASMLYVPIMAVDDVYFIENNSPLYD-----EILAHRLALIPFMSEE 71 (265)
T ss_dssp -CEEEEEECSSEEEEEEESSCHHHHHHHHHHHHHSCCEEEEEEEEEEEECSSSCH-----HHHHHHHTTSCBCCTT
T ss_pred CeEEEEEcCCCEEEEEEeCCCHHHHHHHHHHHHHcCccceEEEEEEEeCCCcccc-----HHHHHhhcCCcCcccC
Confidence 6799999999999999999999999999999 99999999999999999 7777777777776654
No 3
>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1 d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C 1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C* 1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C 1y77_C* ...
Probab=99.71 E-value=7.4e-19 Score=138.52 Aligned_cols=68 Identities=13% Similarity=0.229 Sum_probs=60.9
Q ss_pred CCCCeEEEeecCCceEEEEEccCCchhhhcceee-------EEeeeEEEeecccccCCcccceeeeeeeccceecccccc
Q psy12830 4 ANQPSVHITDLTDENVKFQVEDTELSKRTNGNWK-------ENMEWKGLSAQLLLCSRPSFLFAFLCIYENRLALSQTGF 76 (94)
Q Consensus 4 ~~qP~V~I~eLtd~~vkFiL~ntDlS~ANaLRRi-------lAID~V~I~~NTSVL~d~~~~~~fl~~~~~~~~l~~t~~ 76 (94)
.++|+|+|.++++++++|+|+|.++++||||||+ +|||.|+|+.|||||+| |||+||++.||+-+..+
T Consensus 3 ~~~p~I~i~~~~~~~~kF~leG~~~tlaNALRRiLLSevPg~AI~~V~I~~NTSvl~D-----E~vaHrlglIP~v~eDv 77 (318)
T 1twf_C 3 EEGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLAD-----EFIAHRLGLIPLQSMDI 77 (318)
T ss_dssp CCSSBCCCSCCCSSEECCEEBSSCHHHHHHHHHHHHHCCCEEEEEEEEEEEECSSSCH-----HHHHHHHHTSCEEETTG
T ss_pred ccCCeEEEEEecCCEEEEEEEccChhHHHHHHHHHHHcCccceEEEEEEEeCCccccc-----ceeEeecccCCCcccCh
Confidence 4789999999999999999999999999999999 99999999999999999 77777777777765443
No 4
>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble; 2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1
Probab=98.87 E-value=7.2e-10 Score=83.76 Aligned_cols=54 Identities=11% Similarity=-0.044 Sum_probs=45.1
Q ss_pred CCe-EEEeecCCceEEEEEc----cCCchhhhcceee-------EEeeeEEEeecccccCCcccceeeeeeeccceeccc
Q psy12830 6 QPS-VHITDLTDENVKFQVE----DTELSKRTNGNWK-------ENMEWKGLSAQLLLCSRPSFLFAFLCIYENRLALSQ 73 (94)
Q Consensus 6 qP~-V~I~eLtd~~vkFiL~----ntDlS~ANaLRRi-------lAID~V~I~~NTSVL~d~~~~~~fl~~~~~~~~l~~ 73 (94)
.|. |+|.+.++.+++|+++ |.+.++||||||+ +||+.|.| ++++|+.+.||+-+
T Consensus 10 ~p~~i~i~~~~~~~~~F~l~Ple~G~~~tlgNaLRRiLLsevpg~AI~~V~I--------------e~v~He~~~Ipgv~ 75 (235)
T 1bdf_A 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRAILLSSMPGCAVTEVEI--------------DGVLHEYSTKEGVQ 75 (235)
T ss_dssp CCCEEEEEESSSSEEEEEEEEEETTHHHHHHHHHHHHHTTSCCCEEEEEEEE--------------TTCCSTTCCCTTBS
T ss_pred CCceEEEEEccCCEEEEEEEecCCCCchHHHHHHHHHHHhcCCceEEEEEEE--------------cceeeccccCCCcc
Confidence 344 9999999999999996 9999999999999 99999999 24555555555554
No 5
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=98.79 E-value=2.4e-09 Score=84.27 Aligned_cols=42 Identities=10% Similarity=0.010 Sum_probs=39.8
Q ss_pred CCeEEEeecCCceEEEEEc----cCCchhhhcceee-------EEeeeEEEee
Q psy12830 6 QPSVHITDLTDENVKFQVE----DTELSKRTNGNWK-------ENMEWKGLSA 47 (94)
Q Consensus 6 qP~V~I~eLtd~~vkFiL~----ntDlS~ANaLRRi-------lAID~V~I~~ 47 (94)
.|+|+|.+.++.+++|+++ |.+.++||||||+ +||+.|.|+.
T Consensus 8 ~p~i~i~~~~~~~~~F~l~Ple~G~~~TlgNaLRRiLLsevpg~AI~~V~I~~ 60 (315)
T 2a6h_A 8 APVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIED 60 (315)
T ss_dssp CCEEEEEEETTTEEEEEEEEECTTCHHHHHHHHHHHHHHTCEEEEEEEEEESS
T ss_pred CCeEEEEEccCCEEEEEEEccCCCchhHHHHHHHHHHHhcCCceEEEEEEEec
Confidence 5899999999999999995 9999999999999 9999999975
No 6
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=98.25 E-value=2.8e-07 Score=73.27 Aligned_cols=49 Identities=8% Similarity=-0.027 Sum_probs=41.7
Q ss_pred eEEEeecCCceEEEEEc----cCCchhhhcceee-------EEeeeEEEeecccccCCcccceeeee
Q psy12830 8 SVHITDLTDENVKFQVE----DTELSKRTNGNWK-------ENMEWKGLSAQLLLCSRPSFLFAFLC 63 (94)
Q Consensus 8 ~V~I~eLtd~~vkFiL~----ntDlS~ANaLRRi-------lAID~V~I~~NTSVL~d~~~~~~fl~ 63 (94)
.++|.+.++.+.+|+++ |.+.++||||||+ +||+.|+|+ | | .|+|+.+|
T Consensus 13 ~~~v~~~~~~~~kF~l~PlerG~g~TlgNaLRRvLLssvpg~AIt~V~I~-g--v----~Hefs~Ip 72 (329)
T 3lu0_A 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID-G--V----LHEYSTKE 72 (329)
T ss_dssp CCCEEECTTSEEEEEECCCCTTCHHHHHHHHHHHTTTSSCEEEEEEEEES-S--C----SSTTCCCT
T ss_pred eEEEEEcCCCEEEEEEEecCCCChhHHHHHHHHHHHhcCCceEEEEEEEe-C--c----cccccccc
Confidence 57889999999999999 9999999999999 999999994 3 1 25566555
No 7
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=90.64 E-value=0.16 Score=33.21 Aligned_cols=31 Identities=6% Similarity=0.044 Sum_probs=29.8
Q ss_pred CeEEEeecCCceEEEEEccCCchhhhcceee
Q psy12830 7 PSVHITDLTDENVKFQVEDTELSKRTNGNWK 37 (94)
Q Consensus 7 P~V~I~eLtd~~vkFiL~ntDlS~ANaLRRi 37 (94)
|+|+|.+.+++.+.|++.|=|=.+.|+||-.
T Consensus 1 Meikvi~k~~n~~~f~i~~EDHTLgN~Lr~~ 31 (92)
T 2pa8_L 1 MEIRILKSESNYLELEIEGEDHTLGNLIAGT 31 (92)
T ss_dssp CEEEEEEEETTEEEEEEETCCHHHHHHHHHH
T ss_pred CceEEEecCCCeEEEEEecCchhHHHHHHHH
Confidence 6899999999999999999999999999988
No 8
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=87.72 E-value=0.47 Score=32.56 Aligned_cols=42 Identities=2% Similarity=-0.057 Sum_probs=34.7
Q ss_pred CCCCeEEEeecCCceEEEEEccCCchhhhcceee-EEeeeEEE
Q psy12830 4 ANQPSVHITDLTDENVKFQVEDTELSKRTNGNWK-ENMEWKGL 45 (94)
Q Consensus 4 ~~qP~V~I~eLtd~~vkFiL~ntDlS~ANaLRRi-lAID~V~I 45 (94)
.+.|+++|.+.+++.+.|++.+=|=.+.|+||-. +.-+.|.+
T Consensus 8 ~~kmeiki~~k~~n~~~f~i~~EDHTLgNlLr~~Llkdp~V~f 50 (115)
T 1xpp_A 8 TAESSLRVISKEKNSITVEMINYDNTLLRTLVEEILKDDQVDE 50 (115)
T ss_dssp -CCCEEEEEEECSSEEEEEEESCCHHHHHHHHHHHTTCTTEEE
T ss_pred ccceEEEEEcCCCCEEEEEEeCCCchhHHHHHHHHhcCCCeEE
Confidence 3569999999999999999999999999999988 44344433
No 9
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=75.37 E-value=2 Score=29.38 Aligned_cols=41 Identities=7% Similarity=-0.117 Sum_probs=33.6
Q ss_pred CCCCeEEEeecCCceEEEEEccCCchhhhcceee-EEeeeEE
Q psy12830 4 ANQPSVHITDLTDENVKFQVEDTELSKRTNGNWK-ENMEWKG 44 (94)
Q Consensus 4 ~~qP~V~I~eLtd~~vkFiL~ntDlS~ANaLRRi-lAID~V~ 44 (94)
.+.+++++.+.+++.+.|++.|=|=.+.|+||-. +.-..|.
T Consensus 16 e~K~~~~~~~k~~n~~~f~i~~EDHTLgNlLr~~Llk~p~V~ 57 (120)
T 1twf_K 16 ESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVL 57 (120)
T ss_dssp CCSCCEEECSSSTTEEEEEEESCCHHHHHHHHHHHTTCTTEE
T ss_pred CceEEEEeccCCCCeEEEEEeCCCchHHHHHHHHHhhCCCee
Confidence 4568888888899999999999999999999988 3333333
No 10
>4goj_C Protein UNC-119 homolog A; small G protein ARL, GDI-like solubilizing factors, cilia, S protein; HET: GNP; 2.10A {Homo sapiens} PDB: 4gok_G*
Probab=37.78 E-value=88 Score=24.13 Aligned_cols=78 Identities=19% Similarity=0.373 Sum_probs=54.4
Q ss_pred eEEEeecCCceEEEEEccCCch----------hhhcceee--------EEeeeEEEeecccccCCcccceeee-eeeccc
Q psy12830 8 SVHITDLTDENVKFQVEDTELS----------KRTNGNWK--------ENMEWKGLSAQLLLCSRPSFLFAFL-CIYENR 68 (94)
Q Consensus 8 ~V~I~eLtd~~vkFiL~ntDlS----------~ANaLRRi--------lAID~V~I~~NTSVL~d~~~~~~fl-~~~~~~ 68 (94)
+.+|++++...|-|.+..-+.+ -.||.|.| |-.-.|.=.-+=||=..|+..|-.. -||.+-
T Consensus 90 ~F~IRD~etg~vlFei~kp~~~~~~~~~~~~~d~~agR~VrY~F~p~FLklktVga~i~Fsvgdkpv~nFRmiERhyFrd 169 (240)
T 4goj_C 90 RFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRN 169 (240)
T ss_dssp EEEEEETTTCCEEEEEEC------------------CCEEEEEECGGGGGCSEEEEEEEEECCSSCEEEEEEEEEEEETT
T ss_pred EEEEecCCCCeEEEEecCCCccccccccccccCcccCceEEEecCHHHhcccceeeEEEEeeCceehhcceeeehhhhcc
Confidence 5689999999999999765432 13788877 5555566666667766677444443 588999
Q ss_pred eecccccceeeecCCCC
Q psy12830 69 LALSQTGFRKTFCSPNQ 85 (94)
Q Consensus 69 ~~l~~t~~~~~~~~~~~ 85 (94)
-.|.+--|.--||-||.
T Consensus 170 ~lLksfDFeFGFcIPnS 186 (240)
T 4goj_C 170 QLLKSFDFHFGFCIPSS 186 (240)
T ss_dssp EEEEEEEEEEEEECTTC
T ss_pred cchheeccccceeccCC
Confidence 99999999999999984
No 11
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=35.50 E-value=35 Score=20.45 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=36.2
Q ss_pred CCeEEEeecCCceEEEEEccCCchhhhcceee-----EEeeeEEEeecccccCCcccceeeeeeecc---ceecccccce
Q psy12830 6 QPSVHITDLTDENVKFQVEDTELSKRTNGNWK-----ENMEWKGLSAQLLLCSRPSFLFAFLCIYEN---RLALSQTGFR 77 (94)
Q Consensus 6 qP~V~I~eLtd~~vkFiL~ntDlS~ANaLRRi-----lAID~V~I~~NTSVL~d~~~~~~fl~~~~~---~~~l~~t~~~ 77 (94)
+|+|.|+.++.....+.+... ..++.=-.++ +..+...+.-+-.+|.|.. .|+-+.+..+ .+-+...|=.
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~-~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~-tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPS-DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR-TLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTT-CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTS-BTGGGTCCTTCEEEEEECCCC--
T ss_pred CcEEEEEeCCCCEEEEEECCC-CCHHHHHHHHHhhhCCChhHEEEEECCEECCCCC-cHHHcCCCCCCEEEEEEEcCCCC
Confidence 489999999988888887653 3333222222 5556666666777777754 2222222111 1112233333
Q ss_pred eeecCCCCCCCCCCC
Q psy12830 78 KTFCSPNQSPENPGN 92 (94)
Q Consensus 78 ~~~~~~~~~~~~~~~ 92 (94)
+.-.+|.++.-+|+.
T Consensus 79 ~~~~~p~~~~~~p~~ 93 (96)
T 3k9o_B 79 DLREDPDRQDHHPGS 93 (96)
T ss_dssp ---------------
T ss_pred ccccCCCCCCCCCCc
Confidence 344667777777763
No 12
>3gqq_A Protein UNC-119 homolog A; human retinal protein 4, HRG4, U119A_human, HR3066A, NESG, structural genomics, PSI-2, protein structure initiative; 1.95A {Homo sapiens} PDB: 3rbq_A*
Probab=32.52 E-value=1.5e+02 Score=22.23 Aligned_cols=78 Identities=19% Similarity=0.376 Sum_probs=57.4
Q ss_pred eEEEeecCCceEEEEEccCCchh----------hhcceee--------EEeeeEEEeecccccCCcccceeee-eeeccc
Q psy12830 8 SVHITDLTDENVKFQVEDTELSK----------RTNGNWK--------ENMEWKGLSAQLLLCSRPSFLFAFL-CIYENR 68 (94)
Q Consensus 8 ~V~I~eLtd~~vkFiL~ntDlS~----------ANaLRRi--------lAID~V~I~~NTSVL~d~~~~~~fl-~~~~~~ 68 (94)
+.+|++++...|-|.+..-..+- .|+.|.+ |-.-.|.=+-|=||-..|+..|-.. -||.+-
T Consensus 45 ~F~IRD~etg~vLFei~k~~~~~~~~~~~~~~~~~~~R~vrYqF~~~~L~~k~V~~~i~Fsvgdkpi~nFRmierhyF~~ 124 (195)
T 3gqq_A 45 RFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRN 124 (195)
T ss_dssp EEEEEETTTCCEEEEEECCC--------------CTTCEEEEECCGGGGGCSEEEEEEEEECCSSCBCSEEEEEEEEETT
T ss_pred EEEEeccCCCCEEEEecCCCCccccccccccCCccccceEEEEeCHHHhcchhhceEEEEeeCCccccccEEEEEEEeCC
Confidence 56899999999999997643332 6888888 6666677777778844477444333 578888
Q ss_pred eecccccceeeecCCCC
Q psy12830 69 LALSQTGFRKTFCSPNQ 85 (94)
Q Consensus 69 ~~l~~t~~~~~~~~~~~ 85 (94)
-.|.+--|.--||-||.
T Consensus 125 ~llk~~dF~FGFcIP~S 141 (195)
T 3gqq_A 125 QLLKSFDFHFGFCIPSS 141 (195)
T ss_dssp EEEEEEEEECCCBCTTS
T ss_pred ceeeEEeeeeeeEcCCC
Confidence 89999999999999984
No 13
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=24.91 E-value=54 Score=22.36 Aligned_cols=30 Identities=3% Similarity=-0.011 Sum_probs=25.0
Q ss_pred eEEEeecCCceEEEEEccCCchhhhcceee
Q psy12830 8 SVHITDLTDENVKFQVEDTELSKRTNGNWK 37 (94)
Q Consensus 8 ~V~I~eLtd~~vkFiL~ntDlS~ANaLRRi 37 (94)
+++.-...++.+.|++.+=|=.+.|+||-.
T Consensus 19 ~~~~dtk~~n~~~f~i~~EDHTLgNlLr~~ 48 (123)
T 3h0g_K 19 TYELDSKSPNAAVVTLEKEDHTLANMLANQ 48 (123)
T ss_dssp CEEECSSSTTEEEEEEESCCSSHHHHHHHT
T ss_pred EEecCCCCCceEEEEEeCCCcchHHHHHHH
Confidence 344446667899999999999999999987
No 14
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=24.43 E-value=32 Score=22.04 Aligned_cols=38 Identities=13% Similarity=0.125 Sum_probs=27.4
Q ss_pred CeEEEeecCCceEEEEEccCCchhhhcceee--EEeeeEEEeeccc
Q psy12830 7 PSVHITDLTDENVKFQVEDTELSKRTNGNWK--ENMEWKGLSAQLL 50 (94)
Q Consensus 7 P~V~I~eLtd~~vkFiL~ntDlS~ANaLRRi--lAID~V~I~~NTS 50 (94)
++|++...+.+.+ | -++.+.||+.+ .-.|+|+|..|..
T Consensus 14 ~eVrli~~~Ge~l-----G-v~~~~eAl~~A~e~~LDLVevsp~a~ 53 (78)
T 1tif_A 14 REVRLIDQNGDQL-----G-IKSKQEALEIAARRNLDLVLVAPNAK 53 (78)
T ss_dssp SEEEEECTTSCEE-----E-EEEHHHHHHHHHHTTCEEEEEETTSS
T ss_pred CEEEEECCCCcCC-----C-cccHHHHHHHHHHcCCCEEEECCCCC
Confidence 5566665555544 2 27888899998 8899999998854
Done!