Your job contains 1 sequence.
>psy12830
MPYANQPSVHITDLTDENVKFQVEDTELSKRTNGNWKENMEWKGLSAQLLLCSRPSFLFA
FLCIYENRLALSQTGFRKTFCSPNQSPENPGNLI
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy12830
(94 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0026373 - symbol:RpII33 "RNA polymerase II 33kD su... 126 1.0e-07 1
UNIPROTKB|D4A8A8 - symbol:Polr2c "Protein Polr2c" species... 112 2.4e-07 2
UNIPROTKB|H3BRR2 - symbol:POLR2C "DNA-directed RNA polyme... 116 3.8e-07 1
UNIPROTKB|E1BV97 - symbol:POLR2C "Uncharacterized protein... 116 1.3e-06 1
UNIPROTKB|Q3T0Q3 - symbol:POLR2C "DNA-directed RNA polyme... 116 1.3e-06 1
UNIPROTKB|E2RQ42 - symbol:POLR2C "Uncharacterized protein... 116 1.3e-06 1
UNIPROTKB|P19387 - symbol:POLR2C "DNA-directed RNA polyme... 116 1.3e-06 1
UNIPROTKB|I3LCH3 - symbol:POLR2C "Uncharacterized protein... 116 1.3e-06 1
MGI|MGI:109299 - symbol:Polr2c "polymerase (RNA) II (DNA ... 112 3.7e-06 1
RGD|1306935 - symbol:Polr2c "polymerase (RNA) II (DNA dir... 112 3.7e-06 1
ZFIN|ZDB-GENE-030131-6609 - symbol:polr2c "polymerase (RN... 112 3.7e-06 1
WB|WBGene00007971 - symbol:rpb-3 species:6239 "Caenorhabd... 95 0.00029 1
>FB|FBgn0026373 [details] [associations]
symbol:RpII33 "RNA polymerase II 33kD subunit" species:7227
"Drosophila melanogaster" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISS;NAS] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS;IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0034605 "cellular response to heat" evidence=IEP] [GO:0005634
"nucleus" evidence=IDA] [GO:0005703 "polytene chromosome puff"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005875
"microtubule associated complex" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IDA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
GO:GO:0005737 GO:GO:0005875 GO:GO:0034605 EMBL:AE014134
GO:GO:0003677 GO:GO:0006366 GO:GO:0005703 GO:GO:0003899 KO:K03011
GO:GO:0005665 eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 GeneTree:ENSGT00640000091532 OMA:NQPTVKI
EMBL:AY060644 EMBL:AJ133650 RefSeq:NP_477419.1 UniGene:Dm.3412
HSSP:P16370 SMR:O97183 IntAct:O97183 MINT:MINT-801436 STRING:O97183
EnsemblMetazoa:FBtr0080544 GeneID:34796 KEGG:dme:Dmel_CG7885
UCSC:CG7885-RA CTD:34796 FlyBase:FBgn0026373 InParanoid:O97183
OrthoDB:EOG441NT4 GenomeRNAi:34796 NextBio:790263 Uniprot:O97183
Length = 275
Score = 126 (49.4 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 24/29 (82%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQPSV IT+LTD+NVKF +EDTELS
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELS 29
>UNIPROTKB|D4A8A8 [details] [associations]
symbol:Polr2c "Protein Polr2c" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 RGD:1306935 GO:GO:0005737 GO:GO:0015630 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 OrthoDB:EOG437RFC IPI:IPI00779676
Ensembl:ENSRNOT00000061255 ArrayExpress:D4A8A8 Uniprot:D4A8A8
Length = 330
Score = 112 (44.5 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 20/29 (68%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LT+ENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTEENVKFIIENTDLA 29
Score = 31 (16.0 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 83 PNQSPENPGNL 93
PN PE G+L
Sbjct: 222 PNGKPERLGDL 232
>UNIPROTKB|H3BRR2 [details] [associations]
symbol:POLR2C "DNA-directed RNA polymerase II subunit RPB3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
InterPro:IPR009025 InterPro:IPR011261 Pfam:PF01193 GO:GO:0003677
GO:GO:0006351 EMBL:AC009052 GO:GO:0003899 SUPFAM:SSF55257
HGNC:HGNC:9189 ProteinModelPortal:H3BRR2 SMR:H3BRR2
Ensembl:ENST00000562599 Bgee:H3BRR2 Uniprot:H3BRR2
Length = 46
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLA 29
>UNIPROTKB|E1BV97 [details] [associations]
symbol:POLR2C "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0046983
"protein dimerization activity" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0015630
"microtubule cytoskeleton" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0005737 GO:GO:0015630 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 KO:K03011 GO:GO:0005665
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 CTD:5432
GeneTree:ENSGT00640000091532 OMA:NQPTVKI EMBL:AADN02065759
IPI:IPI00579063 RefSeq:XP_414001.1 UniGene:Gga.11991 PRIDE:E1BV97
Ensembl:ENSGALT00000001768 GeneID:415635 KEGG:gga:415635
NextBio:20819207 Uniprot:E1BV97
Length = 275
Score = 116 (45.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLA 29
>UNIPROTKB|Q3T0Q3 [details] [associations]
symbol:POLR2C "DNA-directed RNA polymerase II subunit RPB3"
species:9913 "Bos taurus" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0015630 "microtubule
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0005737 GO:GO:0015630 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 KO:K03011 GO:GO:0005665 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 EMBL:BT030680 EMBL:BC102301 IPI:IPI00690694
RefSeq:NP_001029384.1 UniGene:Bt.49139 ProteinModelPortal:Q3T0Q3
STRING:Q3T0Q3 PRIDE:Q3T0Q3 Ensembl:ENSBTAT00000002420 GeneID:504452
KEGG:bta:504452 CTD:5432 GeneTree:ENSGT00640000091532
HOVERGEN:HBG000897 InParanoid:Q3T0Q3 OMA:NQPTVKI OrthoDB:EOG437RFC
NextBio:20866665 Uniprot:Q3T0Q3
Length = 275
Score = 116 (45.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLA 29
>UNIPROTKB|E2RQ42 [details] [associations]
symbol:POLR2C "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015630 "microtubule cytoskeleton"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0005737 GO:GO:0015630
GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 KO:K03011 GO:GO:0005665
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 CTD:5432
GeneTree:ENSGT00640000091532 OMA:NQPTVKI EMBL:AAEX03001573
EMBL:AAEX03001572 RefSeq:XP_535283.2 ProteinModelPortal:E2RQ42
PRIDE:E2RQ42 Ensembl:ENSCAFT00000013863 GeneID:478109
KEGG:cfa:478109 NextBio:20853480 Uniprot:E2RQ42
Length = 275
Score = 116 (45.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLA 29
>UNIPROTKB|P19387 [details] [associations]
symbol:POLR2C "DNA-directed RNA polymerase II subunit RPB3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IDA;TAS] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0015630 "microtubule
cytoskeleton" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0005737 Reactome:REACT_116125
GO:GO:0016032 GO:GO:0015630 GO:GO:0003677 Reactome:REACT_1675
GO:GO:0006368 GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788
EMBL:AC004382 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
Reactome:REACT_1892 GO:GO:0003899 KO:K03011 GO:GO:0005665
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
CTD:5432 HOVERGEN:HBG000897 OMA:NQPTVKI OrthoDB:EOG437RFC
EMBL:J05448 EMBL:AF008443 EMBL:AJ224143 EMBL:AJ224144 EMBL:BC000409
EMBL:BC003159 EMBL:BC028157 IPI:IPI00018288 PIR:A36264
RefSeq:NP_116558.1 UniGene:Hs.79402 ProteinModelPortal:P19387
SMR:P19387 DIP:DIP-32911N IntAct:P19387 MINT:MINT-270053
STRING:P19387 PhosphoSite:P19387 DMDM:3915850 PaxDb:P19387
PeptideAtlas:P19387 PRIDE:P19387 DNASU:5432 Ensembl:ENST00000219252
GeneID:5432 KEGG:hsa:5432 UCSC:uc002elt.1 GeneCards:GC16P057496
HGNC:HGNC:9189 HPA:HPA040919 HPA:HPA041826 MIM:180663
neXtProt:NX_P19387 PharmGKB:PA33509 InParanoid:P19387
PhylomeDB:P19387 GenomeRNAi:5432 NextBio:21017 ArrayExpress:P19387
Bgee:P19387 CleanEx:HS_POLR2C Genevestigator:P19387
GermOnline:ENSG00000102978 Uniprot:P19387
Length = 275
Score = 116 (45.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLA 29
>UNIPROTKB|I3LCH3 [details] [associations]
symbol:POLR2C "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0005737 GO:GO:0015630 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 KO:K03011 GO:GO:0005665
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
GeneTree:ENSGT00640000091532 OMA:NQPTVKI EMBL:FP326735
RefSeq:XP_003355849.1 Ensembl:ENSSSCT00000024584 GeneID:100620737
KEGG:ssc:100620737 Uniprot:I3LCH3
Length = 275
Score = 116 (45.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LTDENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLA 29
>MGI|MGI:109299 [details] [associations]
symbol:Polr2c "polymerase (RNA) II (DNA directed) polypeptide
C" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 MGI:MGI:109299 GO:GO:0005737 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 HOVERGEN:HBG000897 EMBL:D83999 IPI:IPI00129026
PIR:JC6181 UniGene:Mm.292492 ProteinModelPortal:P97760 SMR:P97760
IntAct:P97760 STRING:P97760 PhosphoSite:P97760 PaxDb:P97760
PRIDE:P97760 CleanEx:MM_POLR2C Genevestigator:P97760 Uniprot:P97760
Length = 275
Score = 112 (44.5 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 20/29 (68%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LT+ENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTEENVKFIIENTDLA 29
>RGD|1306935 [details] [associations]
symbol:Polr2c "polymerase (RNA) II (DNA directed) polypeptide C"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0015630 "microtubule cytoskeleton" evidence=IEA;ISO]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 RGD:1306935 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
KO:K03011 eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 HOGENOM:HOG000230844 CTD:5432
GeneTree:ENSGT00640000091532 HOVERGEN:HBG000897 OMA:NQPTVKI
EMBL:CH474006 EMBL:BC089905 IPI:IPI00476352 RefSeq:NP_001012491.1
UniGene:Rn.139399 SMR:Q5EB90 STRING:Q5EB90
Ensembl:ENSRNOT00000021639 GeneID:361365 KEGG:rno:361365
UCSC:RGD:1306935 NextBio:676047 Genevestigator:Q5EB90
Uniprot:Q5EB90
Length = 275
Score = 112 (44.5 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 20/29 (68%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+LT+ENVKF +E+T+L+
Sbjct: 1 MPYANQPTVRITELTEENVKFIIENTDLA 29
>ZFIN|ZDB-GENE-030131-6609 [details] [associations]
symbol:polr2c "polymerase (RNA) II (DNA directed)
polypeptide C" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
SMART:SM00662 ZFIN:ZDB-GENE-030131-6609 GO:GO:0003677 GO:GO:0006351
EMBL:AL929309 GO:GO:0003899 KO:K03011 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 CTD:5432 GeneTree:ENSGT00640000091532
HOVERGEN:HBG000897 OMA:NQPTVKI OrthoDB:EOG437RFC EMBL:BC046047
IPI:IPI00484221 RefSeq:NP_001161428.1 UniGene:Dr.81878
STRING:Q7ZV11 Ensembl:ENSDART00000043812 GeneID:334669
KEGG:dre:334669 InParanoid:Q7ZV11 NextBio:20810502 Uniprot:Q7ZV11
Length = 275
Score = 112 (44.5 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 20/29 (68%), Positives = 27/29 (93%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP+V IT+L+DENVKF +E+T+L+
Sbjct: 1 MPYANQPTVKITELSDENVKFVIENTDLA 29
>WB|WBGene00007971 [details] [associations]
symbol:rpb-3 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
SMART:SM00662 EMBL:Z80215 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0003677 GO:GO:0040011 GO:GO:0000003
GO:GO:0006351 GO:GO:0003899 KO:K03011 GO:GO:0001703 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 GeneTree:ENSGT00640000091532 OMA:NQPTVKI
PIR:T19774 RefSeq:NP_492361.2 UniGene:Cel.32712
ProteinModelPortal:Q93338 SMR:Q93338 STRING:Q93338 PaxDb:Q93338
EnsemblMetazoa:C36B1.3 GeneID:172680 KEGG:cel:CELE_C36B1.3
UCSC:C36B1.3 CTD:172680 WormBase:C36B1.3 InParanoid:Q93338
NextBio:876551 Uniprot:Q93338
Length = 282
Score = 95 (38.5 bits), Expect = 0.00029, P = 0.00029
Identities = 16/29 (55%), Positives = 25/29 (86%)
Query: 1 MPYANQPSVHITDLTDENVKFQVEDTELS 29
MPYANQP++ +T+LT++ +KF + DT+LS
Sbjct: 1 MPYANQPNIEVTELTNDIIKFVLWDTDLS 29
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.411 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 94 94 0.00091 102 3 11 22 0.38 30
29 0.42 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 582 (62 KB)
Total size of DFA: 128 KB (2080 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 10.29u 0.06s 10.35t Elapsed: 00:00:04
Total cpu time: 10.29u 0.07s 10.36t Elapsed: 00:00:06
Start: Thu Aug 15 12:12:42 2013 End: Thu Aug 15 12:12:48 2013