RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12830
         (94 letters)



>d1twfc1 d.74.3.1 (C:3-41,C:173-268) RPB3 {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 135

 Score = 26.3 bits (58), Expect = 0.52
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 6  QPSVHITDLTDENVKFQVEDTELS 29
           P V I + + +NV F + + +L+
Sbjct: 3  GPQVKIREASKDNVDFILSNVDLA 26


>d7ahla_ f.6.1.1 (A:) Alpha-hemolysin {Staphylococcus aureus [TaxId:
           1280]}
          Length = 293

 Score = 26.0 bits (57), Expect = 0.74
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 5   NQPS--VHITDLTDENVKFQVEDTELSKRTNGNWKENMEWKGLSAQLLLCSRPSFLFAF- 61
            QP     +   TD+ V ++V    +  +  G +  +        QL + +R   + A  
Sbjct: 149 VQPDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAAD 208

Query: 62  LCIYENRL-ALSQTGFRKTF 80
             +  N+  +L  +GF   F
Sbjct: 209 NFLDPNKASSLLSSGFSPDF 228


>d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus
          musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}
          Length = 73

 Score = 23.2 bits (50), Expect = 3.8
 Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 10 HITD--LTDENVKFQVEDTELSKRTNGNWKENMEWKGLS 46
          H+ +  L +E  ++ VE     +   G  +  ++WKG S
Sbjct: 1  HMVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFS 39


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.411 

Gapped
Lambda     K      H
   0.267   0.0609    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 326,983
Number of extensions: 11954
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 4
Length of query: 94
Length of database: 2,407,596
Length adjustment: 57
Effective length of query: 37
Effective length of database: 1,624,986
Effective search space: 60124482
Effective search space used: 60124482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)