RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12833
(254 letters)
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 389 bits (1001), Expect = e-138
Identities = 160/252 (63%), Positives = 195/252 (77%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
+KG+V ++TGGASGLG AT ER+V +G VL DLP S GE+ AK+LG + FAP DVTS
Sbjct: 10 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTS 69
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
E+DVQ A+ L K FG++DV VNCAGI+ A K +N KG H+L+DF+R+L VN +GTFN
Sbjct: 70 EKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFN 129
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
V RL A + +N+ ++ G RGVIINTAS+AA+EGQ GQ AYSASK GIVGMTLP+ARDLA
Sbjct: 130 VIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLA 189
Query: 182 GAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSIITNPLIN 241
GIRV TIAPGLF TPLL+ L EKV NFLA +P P RLG P E+A LVQ+II NP +N
Sbjct: 190 PIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQVPFPSRLGDPAEYAHLVQAIIENPFLN 249
Query: 242 GEVIRIDGALRM 253
GEVIR+DGA+RM
Sbjct: 250 GEVIRLDGAIRM 261
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 381 bits (981), Expect = e-136
Identities = 124/252 (49%), Positives = 168/252 (66%), Gaps = 2/252 (0%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
LK V +VTG +SGLG A + +EG V+ DL GE A ELG V+F DVT+
Sbjct: 5 LKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTN 64
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
E D A+ K FG + VNCAG + KI + H+LD F R + VN +GTFN
Sbjct: 65 EADATAALAFAKQEFGHVHGLVNCAGTAPGEKILG--RSGPHALDSFARTVAVNLIGTFN 122
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
+ RL+A+++ + + + DG RGVI+NTASIAA++GQ GQ AY+ASK G+ +TLP AR+LA
Sbjct: 123 MIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIGQAAYAASKGGVAALTLPAARELA 182
Query: 182 GAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSIITNPLIN 241
GIRV TIAPG+FDTP+++ + + V++ LA S+P P RLG +E+A LV+ I N ++N
Sbjct: 183 RFGIRVVTIAPGIFDTPMMAGMPQDVQDALAASVPFPPRLGRAEEYAALVKHICENTMLN 242
Query: 242 GEVIRIDGALRM 253
GEVIR+DGALRM
Sbjct: 243 GEVIRLDGALRM 254
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 378 bits (972), Expect = e-134
Identities = 108/252 (42%), Positives = 152/252 (60%), Gaps = 1/252 (0%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
+G +V+GGA GLG+ATV R+ +G VV+ DL +G+++A ELG +F +VTS
Sbjct: 28 FEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTS 87
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
E+ V A+ V G A +I G+ + F + + + GT+N
Sbjct: 88 EDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQ-RDGSPADMGGFTKTIDLYLNGTYN 146
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
VARL A I + E+G RG ++ TASIA YEGQ GQ AY+A+K+G++G+T+ ARDL+
Sbjct: 147 VARLVAASIAAAEPRENGERGALVLTASIAGYEGQIGQTAYAAAKAGVIGLTIAAARDLS 206
Query: 182 GAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSIITNPLIN 241
AGIRVNTIAPG TP++ + E+ A +IP P+RLG PDEFA ++TN IN
Sbjct: 207 SAGIRVNTIAPGTMKTPIMESVGEEALAKFAANIPFPKRLGTPDEFADAAAFLLTNGYIN 266
Query: 242 GEVIRIDGALRM 253
GEV+R+DGA R
Sbjct: 267 GEVMRLDGAQRF 278
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 364 bits (937), Expect = e-129
Identities = 129/254 (50%), Positives = 172/254 (67%), Gaps = 8/254 (3%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
++ V +VTGGASGLG AT +R++ G +VV+ D+ GE V +LG +FA DVT
Sbjct: 7 IRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIR---GEDVVADLGDRARFAAADVTD 63
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
E V A+ ++ G L + VNCAG A ++ + + V SL F++I+ +N VG+FN
Sbjct: 64 EAAVASALD-LAETMGTLRIVVNCAGTGNAIRVLS--RDGVFSLAAFRKIVDINLVGSFN 120
Query: 122 VARLSAQLIHENK--LNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARD 179
V RL+A+ I + + RGVIINTAS+AA++GQ GQ AYSASK G+VGMTLP+ARD
Sbjct: 121 VLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQAAYSASKGGVVGMTLPIARD 180
Query: 180 LAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSIITNPL 239
LA IRV TIAPGLFDTPLL+ L E+ R L + +P P RLG+PDE+ L II NP+
Sbjct: 181 LASHRIRVMTIAPGLFDTPLLASLPEEARASLGKQVPHPSRLGNPDEYGALAVHIIENPM 240
Query: 240 INGEVIRIDGALRM 253
+NGEVIR+DGA+RM
Sbjct: 241 LNGEVIRLDGAIRM 254
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 350 bits (900), Expect = e-123
Identities = 128/248 (51%), Positives = 165/248 (66%), Gaps = 12/248 (4%)
Query: 6 VGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDV 65
LVTGGASGLG+A + G RVV+ DL + G D+ + DVT EEDV
Sbjct: 4 SALVTGGASGLGRAAALALKARGYRVVVLDL---------RREGEDLIYVEGDVTREEDV 54
Query: 66 QKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFNVARL 125
++AV ++ L V+ AG+ A KI K H L+ F+R+L VN +GTFNV RL
Sbjct: 55 RRAVARAQE-EAPLFAVVSAAGVGLAEKILG--KEGPHGLESFRRVLEVNLLGTFNVLRL 111
Query: 126 SAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLAGAGI 185
+A + EN + +G RGVI+NTAS+AA+EGQ GQ AY+ASK G+V +TLP AR+LAG GI
Sbjct: 112 AAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPAARELAGWGI 171
Query: 186 RVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSIITNPLINGEVI 245
RV T+APGLFDTPLL L EK + LA +P P RLG P+E+A LV I+ NP++NGEV+
Sbjct: 172 RVVTVAPGLFDTPLLQGLPEKAKASLAAQVPFPPRLGRPEEYAALVLHILENPMLNGEVV 231
Query: 246 RIDGALRM 253
R+DGALRM
Sbjct: 232 RLDGALRM 239
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 214 bits (547), Expect = 7e-70
Identities = 78/256 (30%), Positives = 122/256 (47%), Gaps = 26/256 (10%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
L G ++TGGA GLG + V G RVVL D+ EG + A+ELG ++ +DVT
Sbjct: 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTI 62
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
EED Q+ V ++ FG +D VN AGIS + S++ F++++ +N G F
Sbjct: 63 EEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETE------SVERFRKVVEINLTGVFI 116
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
+ + + G I+N +S A G + +Y ASK G+ G++ A +L
Sbjct: 117 GMKTVIPAMKDAG------GGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELG 170
Query: 182 GAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGH-PDEFAQLV-------QS 233
IRVN++ PG+ TP+ + + + P R+G+ P E A V S
Sbjct: 171 TDRIRVNSVHPGMTYTPMTAETGIRQGEGNYPNTPM-GRVGNEPGEIAGAVVKLLSDTSS 229
Query: 234 IITNPLINGEVIRIDG 249
+T G + +DG
Sbjct: 230 YVT-----GAELAVDG 240
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 213 bits (544), Expect = 3e-69
Identities = 83/257 (32%), Positives = 118/257 (45%), Gaps = 34/257 (13%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
L G V LV+GGA G+G + V +V EG +VV D+ EG+++A EL ++ +DVT
Sbjct: 5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQ 64
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
+ AV +FG L V VN AGI I +Y +L +++RIL VN G F
Sbjct: 65 PAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDY------ALTEWQRILDVNLTGVFL 118
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
R + + E RG IIN +SI G Y+A+K + G+T A +L
Sbjct: 119 GIRAVVKPMKEAG------RGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELG 172
Query: 182 GAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSIITNPL-- 239
+GIRVN+I PGL TP+ + E + R P E + LV +
Sbjct: 173 PSGIRVNSIHPGLVKTPMTDWVPEDIFQ-----TAL-GRAAEPVEVSNLV-------VYL 219
Query: 240 -------INGEVIRIDG 249
G +DG
Sbjct: 220 ASDESSYSTGAEFVVDG 236
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 213 bits (544), Expect = 4e-69
Identities = 78/261 (29%), Positives = 115/261 (44%), Gaps = 31/261 (11%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
L V +VTGG SG+G+AT E + G VV+ D+ VA E+G VDV+S
Sbjct: 25 LNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSS 84
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
+D + V +G++DV VN AG + + + RI+ VN G F
Sbjct: 85 AKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTI------PEETWDRIMSVNVKGIFL 138
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
++ ++ N G IINT S A + + AY ASK I +T MA D A
Sbjct: 139 CSKYVIPVMRRNG------GGSIINTTSYTATSAIADRTAYVASKGAISSLTRAMAMDHA 192
Query: 182 GAGIRVNTIAPGLFDTPLLSML------NEKVRNFLARSIPAPQRLGHPDEFAQLV---- 231
GIRVN +APG D+P + + K+R+ R+G +E A+ +
Sbjct: 193 KEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNARAVM-DRMGTAEEIAEAMLFLA 251
Query: 232 ---QSIITNPLINGEVIRIDG 249
T G ++ +DG
Sbjct: 252 SDRSRFAT-----GSILTVDG 267
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 212 bits (542), Expect = 6e-69
Identities = 75/256 (29%), Positives = 113/256 (44%), Gaps = 24/256 (9%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
L+ V ++TG G+G T + R G RVVL DLP ++ A +G VD+T+
Sbjct: 9 LENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTN 68
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
E V+ + D+FG+LD+ N A S T ++D + VN GT
Sbjct: 69 EVSVRALIDFTIDTFGRLDIVDNNAAHS----DPADMLVTQMTVDVWDDTFTVNARGTML 124
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
+ + + + G I+N +S A+ AY+ +K+ I +T +A
Sbjct: 125 MCKYAIPRLISAG------GGAIVNISSATAHAAYDMSTAYACTKAAIETLTRYVATQYG 178
Query: 182 GAGIRVNTIAPGLFDTPLL-SMLNEKVRNFLARSIPAPQRLGHPDEFAQLV-------QS 233
G+R N IAPGL TP L L + + + A A R+G P E A+LV +
Sbjct: 179 RHGVRCNAIAPGLVRTPRLEVGLPQPIVDIFATHHLAG-RIGEPHEIAELVCFLASDRAA 237
Query: 234 IITNPLINGEVIRIDG 249
IT G+VI D
Sbjct: 238 FIT-----GQVIAADS 248
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 210 bits (537), Expect = 6e-68
Identities = 69/262 (26%), Positives = 113/262 (43%), Gaps = 32/262 (12%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
L G V +VTG +G+G A R+ EG V+ D+ ++ A ++G VDV+
Sbjct: 27 LAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSD 86
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
E+ + V C +FG +D V AG+ + + +++DF R++ +N G +
Sbjct: 87 EQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDT------TVEDFDRVIAINLRGAWL 140
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
+ +A + E G I+N +S+A G AY SK+GI+ ++ A +L
Sbjct: 141 CTKHAAPRMIERG------GGAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITAAELR 194
Query: 182 GAGIRVNTIAPGLFDTPLLSMLNEKV-------RNFLARSIPAPQRLGHPDEFAQLVQ-- 232
+GIR NT+ P DTP+ + R+ P+E A +V
Sbjct: 195 SSGIRSNTLLPAFVDTPMQQTAMAMFDGALGAGGARSMIARLQ-GRMAAPEEMAGIVVFL 253
Query: 233 -----SIITNPLINGEVIRIDG 249
S+IT G DG
Sbjct: 254 LSDDASMIT-----GTTQIADG 270
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 206 bits (526), Expect = 1e-66
Identities = 68/264 (25%), Positives = 118/264 (44%), Gaps = 33/264 (12%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL-----GPDVKFA 55
M+ G V LVTG A G+G+A E ++ +G +V L D G L F
Sbjct: 4 MVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFI 63
Query: 56 PVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVN 115
DV ++ ++ D FG+LD+ VN AG++ + ++++ L +N
Sbjct: 64 QCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVN--------------NEKNWEKTLQIN 109
Query: 116 TVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMT-- 173
V + L + + G G+IIN +S+A + Q Y ASK GIVG T
Sbjct: 110 LVSVISGTYLGLDYMSKQN---GGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRS 166
Query: 174 LPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEK--------VRNFLARSIPAPQRLGHPD 225
+A +L +G+R+N I PG +T +L + ++ ++ + I + P
Sbjct: 167 AALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKY-YGILDPP 225
Query: 226 EFAQLVQSIITNPLINGEVIRIDG 249
A + ++I + +NG +++I
Sbjct: 226 LIANGLITLIEDDALNGAIMKITT 249
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 205 bits (523), Expect = 4e-66
Identities = 82/259 (31%), Positives = 121/259 (46%), Gaps = 24/259 (9%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
L+G V L+TG SG G+ +R + G +VV+ D + E VA E+G D++
Sbjct: 7 LEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISK 66
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
E DV AV FGK+D+ VN AGI + + ++F RI+ VN G +
Sbjct: 67 EADVDAAVEAALSKFGKVDILVNNAGIGHKPQNA-----ELVEPEEFDRIVGVNVRGVYL 121
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
+ EN G VI+N AS A + Y+A+K +V +T +A +LA
Sbjct: 122 MTSKLIPHFKENG--AKGQECVILNVASTGAGRPRPNLAWYNATKGWVVSVTKALAIELA 179
Query: 182 GAGIRVNTIAPGLFDTPLLSML----NEKVRNFLARSIPAPQRLGHPDEFAQLVQ----- 232
A IRV + P +TPLL+ +E++R SIP RL PD+ A+
Sbjct: 180 PAKIRVVALNPVAGETPLLTTFMGEDSEEIRKKFRDSIPM-GRLLKPDDLAEAAAFLCSP 238
Query: 233 --SIITNPLINGEVIRIDG 249
S+IT G + +DG
Sbjct: 239 QASMIT-----GVALDVDG 252
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 204 bits (522), Expect = 4e-66
Identities = 77/266 (28%), Positives = 118/266 (44%), Gaps = 37/266 (13%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
L+G V LVTGGASG+G V+ ++ EG +V D+ + G+ +A ELG F DV+S
Sbjct: 4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSS 63
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
E D + + G L+V VN AGI + L+DF R+L +NT F
Sbjct: 64 EADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETG------RLEDFSRLLKINTESVFI 117
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
+ + E G IIN AS++++ YSASK+ + +T A
Sbjct: 118 GCQQGIAAMKETG-------GSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCR 170
Query: 182 --GAGIRVNTIAPGLFDTPLLSML-----NEKVRNFLARSIPAPQRLGHPDEFAQLVQSI 234
G IRVN+I P TP++ ++++ + A R P+ AQLV
Sbjct: 171 KQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPKLNRAG-RAYMPERIAQLV--- 226
Query: 235 ITNPL---------INGEVIRIDGAL 251
L ++G + D ++
Sbjct: 227 ----LFLASDESSVMSGSELHADNSI 248
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 203 bits (519), Expect = 2e-65
Identities = 76/262 (29%), Positives = 113/262 (43%), Gaps = 35/262 (13%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
G V +VTGG G+G V V G RVV+CD S G ++ +EL F DVT
Sbjct: 7 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP-GAVFILCDVTQ 65
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVNTVGT 119
E+DV+ V FG+LD VN AG S F+++L +N +GT
Sbjct: 66 EDDVKTLVSETIRRFGRLDCVVNNAGHH-------PPPQRPEETSAQGFRQLLELNLLGT 118
Query: 120 FNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARD 179
+ + +L+ + +++ G +IN +S+ GQ+ V Y A+K + MT +A D
Sbjct: 119 YTLTKLALPYLRKSQ-------GNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALD 171
Query: 180 LAGAGIRVNTIAPGLFDTPLLSML------NEKVRNFLARSIPAPQRLGHPDEFAQLV-- 231
+ G+RVN I+PG TPL L + P R+G P E
Sbjct: 172 ESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPL-GRMGQPAEVGAAAVF 230
Query: 232 ----QSIITNPLINGEVIRIDG 249
+ T G + + G
Sbjct: 231 LASEANFCT-----GIELLVTG 247
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 201 bits (514), Expect = 6e-65
Identities = 71/260 (27%), Positives = 111/260 (42%), Gaps = 29/260 (11%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGP--DVKFAPVDV 59
L G V ++TGG G+G A + V EG +V++ + GE AK +G ++F D
Sbjct: 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDS 63
Query: 60 TSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGT 119
+ E+ K + +FG + VN AGI+ + + +++++L VN G
Sbjct: 64 SDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEET------TTAEWRKLLAVNLDGV 117
Query: 120 FNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARD 179
F RL Q + GL IIN +SI + G AY+ASK + M+ A D
Sbjct: 118 FFGTRLGIQRMKNK-----GLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALD 172
Query: 180 LA--GAGIRVNTIAPGLFDTPLL-SMLNEKVRNFLARSIPAPQRLGHPDEFAQLV----- 231
A +RVNT+ PG TPL+ + + P +G P++ A +
Sbjct: 173 CALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPM-GHIGEPNDIAYICVYLAS 231
Query: 232 --QSIITNPLINGEVIRIDG 249
T G +DG
Sbjct: 232 NESKFAT-----GSEFVVDG 246
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 201 bits (514), Expect = 1e-64
Identities = 72/272 (26%), Positives = 113/272 (41%), Gaps = 45/272 (16%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL-----GPDVKFAP 56
V L+TGG SGLG+AT R+ EG ++ L D+ + E+ + +V
Sbjct: 11 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTV 70
Query: 57 VDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLV 114
DV+ E V+ V + FG++D N AGI + +F +++ +
Sbjct: 71 ADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQ-------NPTESFTAAEFDKVVSI 123
Query: 115 NTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTL 174
N G F +++ E G+++NTAS+ G Q Y+A+K G+VG+T
Sbjct: 124 NLRGVFLGLEKVLKIMREQG------SGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTR 177
Query: 175 PMARDLAGAGIRVNTIAPGLFDTPLLSML--------NEKVRNFLARSIPAPQRLGHPDE 226
A + GIR+N IAPG TP++ K + P+ R G E
Sbjct: 178 NSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSK-RYGEAPE 236
Query: 227 FAQLVQSIITNPL---------INGEVIRIDG 249
A +V +N V+ IDG
Sbjct: 237 IAAVV-------AFLLSDDASYVNATVVPIDG 261
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 200 bits (512), Expect = 2e-64
Identities = 82/262 (31%), Positives = 123/262 (46%), Gaps = 34/262 (12%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVT 60
+ G LVTGGA G+G+A + REG V LCDL EG+ VA+ +G F VD+
Sbjct: 3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDL-RPEGKEVAEAIG--GAFFQVDLE 59
Query: 61 SEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTF 120
E + + V + G++DV VN A I+ L +++R+L VN
Sbjct: 60 DERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTV------RLPEWRRVLEVNLTAPM 113
Query: 121 NVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDL 180
+++ L+A+ + + G I+N AS+ + AY+ASK G+V +T +A DL
Sbjct: 114 HLSALAAREMRKVG------GGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDL 167
Query: 181 AGAGIRVNTIAPGLFDTPLLSML------NEKVRNFLARSIPAPQRLGHPDEFAQLVQ-- 232
A IRVN +APG T + E+ R +RLG P+E A+ V
Sbjct: 168 APLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHAL-RRLGKPEEVAEAVLFL 226
Query: 233 -----SIITNPLINGEVIRIDG 249
S IT G ++ +DG
Sbjct: 227 ASEKASFIT-----GAILPVDG 243
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 200 bits (511), Expect = 4e-64
Identities = 70/265 (26%), Positives = 111/265 (41%), Gaps = 23/265 (8%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
L G V L+TGGASGLG+A V+R V EG RV + D + G + DV S
Sbjct: 3 LTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRS 62
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
+D ++A C +FGK+D + AGI + F I VN G +
Sbjct: 63 LQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALA-DLPEDKIDAAFDDIFHVNVKGYIH 121
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
+ + + RG ++ T S A + G Y+A+K +VG+ MA +LA
Sbjct: 122 AVKACLPALVSS-------RGSVVFTISNAGFYPNGGGPLYTATKHAVVGLVRQMAFELA 174
Query: 182 GAGIRVNTIAPGLFDTPLLSML----------NEKVRNFLARSIPAPQRLGHPDEFAQLV 231
+RVN +APG +T L + + + L +P R+ +E+
Sbjct: 175 -PHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLPI-GRMPALEEYTGAY 232
Query: 232 Q---SIITNPLINGEVIRIDGALRM 253
+ + G ++ DG + +
Sbjct: 233 VFFATRGDSLPATGALLNYDGGMGV 257
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 200 bits (510), Expect = 6e-64
Identities = 68/269 (25%), Positives = 119/269 (44%), Gaps = 36/269 (13%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL------GPDVKFA 55
+ LVTGG SG+GK +V G V++ + +EL G +++
Sbjct: 9 FQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYE 68
Query: 56 PVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILL 113
P D+T+E++ +AV G+L V+CAG + N G + + ++R +
Sbjct: 69 PTDITNEDETARAVDAVTAWHGRLHGVVHCAGG-------SENIGPITQVDSEAWRRTVD 121
Query: 114 VNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMT 173
+N GT V + +A+ + G + +SIAA AY +KS + +
Sbjct: 122 LNVNGTMYVLKHAAREMVRGG------GGSFVGISSIAASNTHRWFGAYGVTKSAVDHLM 175
Query: 174 LPMARDLAGAGIRVNTIAPGLFDTPLLSML--NEKVRNFLARSIPAPQRLGHPDEFAQLV 231
A +L + +RVN+I PGL T L++ + + ++ + A P P R G ++ A +
Sbjct: 176 QLAADELGASWVRVNSIRPGLIRTDLVAAITESAELSSDYAMCTPLP-RQGEVEDVANMA 234
Query: 232 Q-------SIITNPLINGEVIRIDGALRM 253
S +T G+VI +DG +
Sbjct: 235 MFLLSDAASFVT-----GQVINVDGGQML 258
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 198 bits (507), Expect = 9e-64
Identities = 75/259 (28%), Positives = 114/259 (44%), Gaps = 32/259 (12%)
Query: 6 VGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL----GPDVKFAPVDVTS 61
V +VTG +SG G A R + G RV DL E A+ V DV
Sbjct: 4 VAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVAD 63
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVNTVGT 119
E DV A+ + FG +DV VN AGI+ N G +H ++ F +++ VN G
Sbjct: 64 EGDVNAAIAATMEQFGAIDVLVNNAGITG-----NSEAGVLHTTPVEQFDKVMAVNVRGI 118
Query: 120 FNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARD 179
F R + GVI+N AS+A+ G+ AY+ SK ++ +T +A D
Sbjct: 119 FLGCRAVLPHMLLQG------AGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVD 172
Query: 180 LAGAGIRVNTIAPGLFDTPLLSML--NEKVRNFLARSIPAPQRLGHPDEFAQLVQ----- 232
AG+GIR N + PG+ +TP+ ++R+ + IP +G + A V
Sbjct: 173 YAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQK-EIGTAAQVADAVMFLAGE 231
Query: 233 --SIITNPLINGEVIRIDG 249
+ + G + +DG
Sbjct: 232 DATYVN-----GAALVMDG 245
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 198 bits (507), Expect = 1e-63
Identities = 79/274 (28%), Positives = 110/274 (40%), Gaps = 43/274 (15%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVD 58
G V LVTG +G AT R+ EG + L D+ E + G + + D
Sbjct: 5 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCD 64
Query: 59 VTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVG 118
VTSEE V V FGK+D N AG AF + DDF R+L +N G
Sbjct: 65 VTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPV-----QDYPSDDFARVLTINVTG 119
Query: 119 TFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMAR 178
F+V + ++ + G I+NTAS+A +G AY SK I+ +T A
Sbjct: 120 AFHVLKAVSRQMITQN------YGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAAL 173
Query: 179 DLAGAGIRVNTIAPGLFDTPLLSMLN----------------EKVRNFLARSIPAPQRLG 222
DLA IRVN I+PG + + V + S+P +R G
Sbjct: 174 DLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPM-RRYG 232
Query: 223 HPDEFAQLVQ-------SIITNPLINGEVIRIDG 249
+E +V S +T G + I G
Sbjct: 233 DINEIPGVVAFLLGDDSSFMT-----GVNLPIAG 261
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 196 bits (502), Expect = 4e-63
Identities = 66/265 (24%), Positives = 109/265 (41%), Gaps = 34/265 (12%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVD 58
L G ++TG +G+GK G VV+ D+ V E+ G D
Sbjct: 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCD 68
Query: 59 VTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVNT 116
+TSE+++ GK+D+ VN AG + DF+R +N
Sbjct: 69 ITSEQELSALADFAISKLGKVDILVNNAGG---------GGPKPFDMPMADFRRAYELNV 119
Query: 117 VGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPM 176
F++++L A + +N GVI+ S+AA +Y++SK+ + M
Sbjct: 120 FSFFHLSQLVAPEMEKNG------GGVILTITSMAAENKNINMTSYASSKAAASHLVRNM 173
Query: 177 ARDLAGAGIRVNTIAPGLFDTPLL-SMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ--- 232
A DL IRVN IAPG T L S++ ++ + + P +RLG P + A
Sbjct: 174 AFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPI-RRLGQPQDIANAALFLC 232
Query: 233 ----SIITNPLINGEVIRIDGALRM 253
S ++ G+++ + G
Sbjct: 233 SPAASWVS-----GQILTVSGGGVQ 252
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 196 bits (501), Expect = 8e-63
Identities = 65/270 (24%), Positives = 113/270 (41%), Gaps = 35/270 (12%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
L+G L+TG A G+G+A E VREG V + D+ A E+GP +DVT
Sbjct: 6 LEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTR 65
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
++ + A+ + G LD+ VN A + I + + ++++ +N GT
Sbjct: 66 QDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEI------TRESYEKLFAINVAGTLF 119
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
+ +A+ ++ G G IIN AS A G++ Y A+K+ ++ +T DL
Sbjct: 120 TLQAAAR-----QMIAQGRGGKIINMASQAGRRGEALVAIYCATKAAVISLTQSAGLDLI 174
Query: 182 GAGIRVNTIAPGLFDTPLLSMLN-----------EKVRNFLARSIPAPQRLGHPDEFAQL 230
I VN IAPG+ D ++ + + + ++P R+G ++ +
Sbjct: 175 KHRINVNAIAPGVVDGEHWDGVDALFARYENRPRGEKKRLVGEAVPF-GRMGTAEDLTGM 233
Query: 231 VQ-------SIITNPLINGEVIRIDGALRM 253
I + +DG M
Sbjct: 234 AIFLASAESDYIV-----SQTYNVDGGNWM 258
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 196 bits (501), Expect = 8e-63
Identities = 68/268 (25%), Positives = 120/268 (44%), Gaps = 33/268 (12%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVD 58
LK V +VTG SG+G+A ++ VV +L + +EL G +V D
Sbjct: 5 LKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKAD 64
Query: 59 VTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVNT 116
V+ ++DV++ V +++ ++DV N AGI V S + ++R+L VN
Sbjct: 65 VSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGV-------TPVAEVSDELWERVLAVNL 117
Query: 117 VGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPM 176
F +R ++ + +GVI+NTASIA G Y+ +K G++G+T +
Sbjct: 118 YSAFYSSRAVIPIMLKQG------KGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSI 171
Query: 177 ARDLAGAGIRVNTIAPGLFDTPLLSMLN----EKVRNFLARSIPAPQRLGHPDEFAQLV- 231
A GIR + PG T + + +R + RL P++ A ++
Sbjct: 172 AAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMSLSS-RLAEPEDIANVIV 230
Query: 232 -----QSIITNPLINGEVIRIDGALRMI 254
++ +NG+ + +DG L ++
Sbjct: 231 FLASDEA----SFVNGDAVVVDGGLTVL 254
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 196 bits (501), Expect = 2e-62
Identities = 71/265 (26%), Positives = 109/265 (41%), Gaps = 36/265 (13%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVD 58
L+G + +VTG +SG+G+A REG +VV+ + + E+ G + D
Sbjct: 6 LEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGD 65
Query: 59 VTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVNT 116
V E + V L FG LD N AG A G + S++ ++ L N
Sbjct: 66 VGDEALHEALVELAVRRFGGLDTAFNNAGALGAM-------GEISSLSVEGWRETLDTNL 118
Query: 117 VGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAY-EGQSGQVAYSASKSGIVGMTLP 175
F A+ I G + T+S + G +G Y+ASK+G++G+
Sbjct: 119 TSAFLAAKYQVPAIAALG------GGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQA 172
Query: 176 MARDLAGAGIRVNTIAPGLFDTPL----LSMLNEKVRNFLARSIPAPQRLGHPDEFAQLV 231
+A +L GIRVN + PG DTP L + R F+ R+ P+E A+
Sbjct: 173 LAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALK-RIARPEEIAEAA 231
Query: 232 Q-------SIITNPLINGEVIRIDG 249
S +T G + DG
Sbjct: 232 LYLASDGASFVT-----GAALLADG 251
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 193 bits (494), Expect = 1e-61
Identities = 77/268 (28%), Positives = 122/268 (45%), Gaps = 48/268 (17%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
V +VTGG+SG+G A V+ +VR G +VV L +V+ +DVT+
Sbjct: 12 FTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHF-------KIDVTN 64
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVNTVGT 119
EE+V++AV +G++D+ VN AGI +H + ++RI+ VN G+
Sbjct: 65 EEEVKEAVEKTTKKYGRIDILVNNAGIE--------QYSPLHLTPTEIWRRIIDVNVNGS 116
Query: 120 FNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARD 179
+ +A+ + ++ G IIN AS+ +Y AY SK ++G+T +A D
Sbjct: 117 YLMAKYTIPVMLAIG------HGSIINIASVQSYAATKNAAAYVTSKHALLGLTRSVAID 170
Query: 180 LAGAGIRVNTIAPGLFDTPLLSML-----------NEKVRNFLARSIPAPQRLGHPDEFA 228
A IR N + PG TP++ E+ R P R+G P+E A
Sbjct: 171 YA-PKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQHPM-GRIGRPEEVA 228
Query: 229 QLV-------QSIITNPLINGEVIRIDG 249
++V S IT G + +DG
Sbjct: 229 EVVAFLASDRSSFIT-----GACLTVDG 251
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 193 bits (493), Expect = 2e-61
Identities = 58/248 (23%), Positives = 95/248 (38%), Gaps = 14/248 (5%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
+ +VTG SG+G+A + G V L + A E+G D P DVT
Sbjct: 26 TGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTD 85
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
+ V+ + FG++DV N AG + +K+++ N G F
Sbjct: 86 PDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPM-----EDLTFAQWKQVVDTNLTGPFL 140
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
+ + +++ ++ G IIN SI+A + Y+A+K I G+T + D
Sbjct: 141 CTQEAFRVM----KAQEPRGGRIINNGSISATSPRPYSAPYTATKHAITGLTKSTSLDGR 196
Query: 182 GAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSIITNPL-- 239
I I G DTP+ + V SI + + A V + + PL
Sbjct: 197 VHDIACGQIDIGNADTPMAQKMKAGVPQ-ADLSIKV-EPVMDVAHVASAVVYMASLPLDA 254
Query: 240 -INGEVIR 246
+ I
Sbjct: 255 NVQFMTIM 262
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 193 bits (493), Expect = 2e-61
Identities = 72/266 (27%), Positives = 126/266 (47%), Gaps = 37/266 (13%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPD--VKFAPVDV 59
L+ V ++TGGA G+G+ T + VR G +VV+ D+ G+ V +G + F DV
Sbjct: 14 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDV 73
Query: 60 TSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVNTV 117
T +EDV+ V GKLD+ G+ ++ +DFKR++ +N
Sbjct: 74 TKDEDVRNLVDTTIAKHGKLDIMFGNVGVLST------TPYSILEAGNEDFKRVMDINVY 127
Query: 118 GTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSG-QVAYSASKSGIVGMTLPM 176
G F VA+ +A+++ K +G I+ TASI+++ G Y+A+K ++G+T +
Sbjct: 128 GAFLVAKHAARVMIPAK------KGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSL 181
Query: 177 ARDLAGAGIRVNTIAPGLFDTPLLSML----NEKVRNFLARSIPAPQRLGHPDEFAQLVQ 232
+L GIRVN ++P + +PLL+ + + +V ++ L ++ A V
Sbjct: 182 CTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLRAEDVADAV- 240
Query: 233 SIITNPL---------INGEVIRIDG 249
++G + IDG
Sbjct: 241 ------AYLAGDESKYVSGLNLVIDG 260
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 192 bits (490), Expect = 4e-61
Identities = 75/264 (28%), Positives = 120/264 (45%), Gaps = 35/264 (13%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVD 58
L V +VTGGA +G A V + G RV++ DL + ++L G DV +D
Sbjct: 11 LDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMD 70
Query: 59 VTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVNT 116
VT+ E VQ AV + G++D+ V CAGI ++ + + + + +N
Sbjct: 71 VTNTESVQNAVRSVHEQEGRVDILVACAGI-------CISEVKAEDMTDGQWLKQVDINL 123
Query: 117 VGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEG--QSGQVAYSASKSGIVGMTL 174
G F + +++ E K +GVI+ S++ Q AY+ASK+G+
Sbjct: 124 NGMFRSCQAVGRIMLEQK------QGVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIR 177
Query: 175 PMARDLAGAGIRVNTIAPGLFDTPLLSMLNEK--VRNFLARSIPAPQRLGHPDEFAQLVQ 232
+A + A GIR N +AP +T L EK + + P R+G PDE A +VQ
Sbjct: 178 SLAAEWAPHGIRANAVAPTYIETTLTRFGMEKPELYDAWIAGTPM-GRVGQPDEVASVVQ 236
Query: 233 -------SIITNPLINGEVIRIDG 249
S++T G ++ +D
Sbjct: 237 FLASDAASLMT-----GAIVNVDA 255
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 190 bits (485), Expect = 1e-60
Identities = 67/264 (25%), Positives = 111/264 (42%), Gaps = 42/264 (15%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
L G V ++T A G+G+A REG +V+ D+ S+ + + K G ++ +DVT
Sbjct: 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPG--IQTRVLDVTK 61
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVNTVGT 119
++ + + + +LDV N AG GTV D+ + +N
Sbjct: 62 KKQIDQFA----NEVERLDVLFNVAGFVHH--------GTVLDCEEKDWDFSMNLNVRSM 109
Query: 120 FNVARLSAQLIHENKLNEDGLRGVIINTASIAAY-EGQSGQVAYSASKSGIVGMTLPMAR 178
+ + + + K G IIN +S+A+ +G + YS +K+ ++G+T +A
Sbjct: 110 YLMIKAFLPKMLAQK------SGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAA 163
Query: 179 DLAGAGIRVNTIAPGLFDTPLLSML------NEKVRNFLARSIPAPQRLGHPDEFAQLV- 231
D GIR N + PG DTP L E+ RN + R +E A L
Sbjct: 164 DFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKT-GRFATAEEIAMLCV 222
Query: 232 ------QSIITNPLINGEVIRIDG 249
+ +T G + IDG
Sbjct: 223 YLASDESAYVT-----GNPVIIDG 241
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 191 bits (487), Expect = 1e-60
Identities = 59/274 (21%), Positives = 103/274 (37%), Gaps = 39/274 (14%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPV 57
+L V +++G LG R +G +VL E VAK++ G
Sbjct: 8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGT 67
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTV 117
D+T + V V ++G++DV +N A + K F + + + + +
Sbjct: 68 DITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPF-----ANTTFEHMRDAIELTVF 122
Query: 118 GTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMA 177
G + + + E+K G ++N S+ Q+ AY +KS ++ M+ +A
Sbjct: 123 GALRLIQGFTPALEESK-------GAVVNVNSMVVRHSQAKYGAYKMAKSALLAMSQTLA 175
Query: 178 RDLAGAGIRVNTIAPGLFDTPLLSML-----------NEKVRNFLARSIPAPQRLGHPDE 226
+L GIRVN++ PG L E + N A +RL DE
Sbjct: 176 TELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAGSDL-KRLPTEDE 234
Query: 227 FAQLVQ-------SIITNPLINGEVIRIDGALRM 253
A + S IT G+ + ++
Sbjct: 235 VASAILFMASDLASGIT-----GQALDVNCGEYK 263
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 190 bits (486), Expect = 1e-60
Identities = 73/260 (28%), Positives = 119/260 (45%), Gaps = 28/260 (10%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
L G LVTG ASG+G+A ++ REG +V D L + DV+
Sbjct: 4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSD 63
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
+ V+ + FG+L + AG++ + +N L+ ++++L VN G+F
Sbjct: 64 PKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNL------PLEAWEKVLRVNLTGSFL 117
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
VAR + +++ E G ++ T S+A G G Y+A K G+VG+ +A +LA
Sbjct: 118 VARKAGEVLEEG--------GSLVLTGSVAGL-GAFGLAHYAAGKLGVVGLARTLALELA 168
Query: 182 GAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ-------SI 234
G+RVN + PGL TP+ + L + P R G P+E AQ +
Sbjct: 169 RKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASPL-GRAGRPEEVAQAALFLLSEESAY 227
Query: 235 ITNPLINGEVIRIDGALRMI 254
IT G+ + +DG ++
Sbjct: 228 IT-----GQALYVDGGRSIV 242
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 189 bits (483), Expect = 4e-60
Identities = 65/266 (24%), Positives = 115/266 (43%), Gaps = 33/266 (12%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVD 58
L+ V LVT G+G A R+ ++G VV+ + L G V
Sbjct: 12 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCH 71
Query: 59 VTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVNT 116
V ED ++ V + + G +D+ V+ A + N G + + + + +IL VN
Sbjct: 72 VGKAEDRERLVAMAVNLHGGVDILVSNAAV-------NPFFGNIIDATEEVWDKILHVNV 124
Query: 117 VGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPM 176
T + + + + G ++ +S+ AY Y+ SK+ ++G+T +
Sbjct: 125 KATVLMTKAVVPEMEKRG------GGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNL 178
Query: 177 ARDLAGAGIRVNTIAPGLFDTPLLSML--NEKVRNFLARSIPAPQRLGHPDEFAQLVQ-- 232
A +LA IRVN +APGL T +L ++ + ++ S+ +RLG+P++ A +V
Sbjct: 179 AVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRI-RRLGNPEDCAGIVSFL 237
Query: 233 -----SIITNPLINGEVIRIDGALRM 253
S IT GE + + G
Sbjct: 238 CSEDASYIT-----GETVVVGGGTAS 258
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 189 bits (483), Expect = 7e-60
Identities = 65/275 (23%), Positives = 107/275 (38%), Gaps = 40/275 (14%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVD 58
V L+TG SG+G+AT + +G V +E E VA E+ G D
Sbjct: 26 QPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEAD 85
Query: 59 VTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVNT 116
V+ E ++ AV FG LD+ V AGI N + ++ + VN
Sbjct: 86 VSDELQMRNAVRDLVLKFGHLDIVVANAGI-------NGVWAPIDDLKPFEWDETIAVNL 138
Query: 117 VGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYE--GQSGQVAYSASKSGIVGMTL 174
GTF L+ + + G I+ +SI G AY+A+K+ V +
Sbjct: 139 RGTFLTLHLTVPYLKQRG------GGAIVVVSSINGTRTFTTPGATAYTATKAAQVAIVQ 192
Query: 175 PMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVR-------NFLARSIPAPQ-RLGHPDE 226
+A +L IRVN + PG +T + + + +P + G ++
Sbjct: 193 QLALELGKHHIRVNAVCPGAIETNISDNTKLRHEEETAIPVEWPKGQVPITDGQPGRSED 252
Query: 227 FAQLVQ-------SIITNPLINGEVIRIDGALRMI 254
A+L++ +T G + IDG ++
Sbjct: 253 VAELIRFLVSERARHVT-----GSPVWIDGGQGLL 282
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 188 bits (481), Expect = 1e-59
Identities = 73/270 (27%), Positives = 111/270 (41%), Gaps = 35/270 (12%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
L G +VTGG+ G+G A + + G V + DL ++V L VDVT
Sbjct: 10 LSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTK 69
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
V A+ D+ G D+ AG+S + + +++ VN G F
Sbjct: 70 RASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDI------TDEEWDFNFDVNARGVFL 123
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
+++ + +GVI+NTAS+AA G YSASK + G T +AR++A
Sbjct: 124 ANQIACR-----HFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFAVFGWTQALAREMA 178
Query: 182 GAGIRVNTIAPGLFDTPL-----------LSMLNEKVRNFLARSIPAPQRLGHPDEFAQL 230
IRVN + PG T + M E VR P R+ P++ A +
Sbjct: 179 PKNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSLTPL-GRIEEPEDVADV 237
Query: 231 VQ-------SIITNPLINGEVIRIDGALRM 253
V +T G+ I + G +RM
Sbjct: 238 VVFLASDAARFMT-----GQGINVTGGVRM 262
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 188 bits (479), Expect = 1e-59
Identities = 66/264 (25%), Positives = 106/264 (40%), Gaps = 32/264 (12%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAKELGPDVKFAPVDVT 60
LK + ++TGGA+G+G+A ER EG + + DL + E+ + LG V DV+
Sbjct: 5 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVS 64
Query: 61 SEEDVQKAVLLCKDSFGKLDVNVNCAGI---SCAFKIFNYNKGTVHSLDDFKRILLVNTV 117
DV+ +FG+ D+ VN AGI ++ + + +K+ +N
Sbjct: 65 QPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDEL---------TFEQWKKTFEINVD 115
Query: 118 GTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMA 177
F +A+ + N G IIN S + Y ++K+ +G T +A
Sbjct: 116 SGFLMAKAFVPGMKRNG------WGRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALA 169
Query: 178 RDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAP-QRLGHPDEFAQLVQ---- 232
DL GI VN IAP L T + ++ RL P +
Sbjct: 170 SDLGKDGITVNAIAPSLVRTATTEASALSAMFDVLPNMLQAIPRLQVPLDLTGAAAFLAS 229
Query: 233 ---SIITNPLINGEVIRIDGALRM 253
S IT G+ + +DG +
Sbjct: 230 DDASFIT-----GQTLAVDGGMVR 248
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 188 bits (480), Expect = 1e-59
Identities = 69/266 (25%), Positives = 111/266 (41%), Gaps = 45/266 (16%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
L+ V +VTG + G+G+A ER V EG +V+ + DVT+
Sbjct: 6 LRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLS--------IHDPGEAKYDHIECDVTN 57
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
+ V+ ++ +G + V VN AGI KI + S+ +++RI+ VN G +
Sbjct: 58 PDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESM------SMGEWRRIIDVNLFGYYY 111
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
++ + + ++ I+N +S+ A AY SK ++G+T +A D A
Sbjct: 112 ASKFAIPYMIRSR------DPSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDYA 165
Query: 182 GAGIRVNTIAPGLFDTPLLSML-----------NEKVRNFLARSIPAPQRLGHPDEFAQL 230
+R N + P DTPL+ EK + P QR+G P E A
Sbjct: 166 -PLLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEHPM-QRIGKPQEVASA 223
Query: 231 VQ-------SIITNPLINGEVIRIDG 249
V S IT G + +DG
Sbjct: 224 VAFLASREASFIT-----GTCLYVDG 244
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 187 bits (478), Expect = 2e-59
Identities = 71/265 (26%), Positives = 116/265 (43%), Gaps = 33/265 (12%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVD 58
+ VG+VTG G+G+A E + REG VV+ D+ E+VAK++ G VD
Sbjct: 7 FENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVD 66
Query: 59 VTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVNT 116
V+ E + FG +D VN A I K+ + + +K+ + VN
Sbjct: 67 VSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKL-----DFLLTIDPEYYKKFMSVNL 121
Query: 117 VGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPM 176
G R + + + G I+N +S A Y +K GI G+T +
Sbjct: 122 DGALWCTRAVYKKMTKRG------GGAIVNQSSTA---AWLYSNYYGLAKVGINGLTQQL 172
Query: 177 ARDLAGAGIRVNTIAPGLFDTPLL-SMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ--- 232
+R+L G IR+N IAPG DT + +++ + + + +P R+G PD+ +
Sbjct: 173 SRELGGRNIRINAIAPGPIDTEANRTTTPKEMVDDIVKGLPL-SRMGTPDDLVGMCLFLL 231
Query: 233 ----SIITNPLINGEVIRIDGALRM 253
S IT G++ +DG +
Sbjct: 232 SDEASWIT-----GQIFNVDGGQII 251
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 188 bits (479), Expect = 2e-59
Identities = 69/267 (25%), Positives = 124/267 (46%), Gaps = 33/267 (12%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVD 58
+K V ++TGG+SG+GK R +EG RVV+ + E E+ + +D
Sbjct: 4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMD 63
Query: 59 VTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH-SLDDFKRILLVNTV 117
V + +D+QK + + FG++D+ +N A N+ S++ + ++ +
Sbjct: 64 VRNTDDIQKMIEQIDEKFGRIDILINNAAG-------NFICPAEDLSVNGWNSVINIVLN 116
Query: 118 GTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMA 177
GTF ++ E G++G IIN + A++ G + +A+K+G++ MT +A
Sbjct: 117 GTFYCSQAIG-----KYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLAMTKTLA 171
Query: 178 RDLAG-AGIRVNTIAPGLFDTPLLS---MLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ- 232
+ GIRVN IAPG + + ++E++ +S+P RLG P+E A L
Sbjct: 172 VEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSVPL-GRLGTPEEIAGLAYY 230
Query: 233 ------SIITNPLINGEVIRIDGALRM 253
+ I G + +DG +
Sbjct: 231 LCSDEAAYIN-----GTCMTMDGGQHL 252
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 187 bits (478), Expect = 2e-59
Identities = 70/260 (26%), Positives = 103/260 (39%), Gaps = 28/260 (10%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL----GPDVKFAPV 57
L G L+TG G+G G R+VL SE ++ + L G DV +
Sbjct: 18 LDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAI 77
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTV 117
D+ + + ++FG LDV VN AGIS + + F + VN
Sbjct: 78 DLAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDT------DPQLFDATIAVNLR 131
Query: 118 GTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMA 177
+A + + G G II AS AA AY SK+G+V T +A
Sbjct: 132 APALLASAVGK-----AMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAGLVMATKVLA 186
Query: 178 RDLAGAGIRVNTIAPGLFDTPLLSML--NEKVRNFLARSIPAPQRLGHPDEFAQLV---- 231
R+L GIR N++ P + T + + +E + IP R P E + V
Sbjct: 187 RELGPHGIRANSVCPTVVLTEMGQRVWGDEAKSAPMIARIPL-GRFAVPHEVSDAVVWLA 245
Query: 232 --QSIITNPLINGEVIRIDG 249
+ +ING I +DG
Sbjct: 246 SDAA----SMINGVDIPVDG 261
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 187 bits (478), Expect = 3e-59
Identities = 57/264 (21%), Positives = 96/264 (36%), Gaps = 38/264 (14%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
L + ++TG SG+G A +R V EG RV + ++ E+G D +
Sbjct: 27 LNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSAN 86
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
++ + K G++DV AG + + + + N G
Sbjct: 87 LAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEV------TEEQYDDTFDRNVKGVLF 140
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
+ + L+ ++ T S A G Y+ASK+ + DL
Sbjct: 141 TVQKALPLLARG--------SSVVLTGSTAGSTGTPAFSVYAASKAALRSFARNWILDLK 192
Query: 182 GAGIRVNTIAPGLFDTPLLSML-------NEKVRNFLARSIPAPQRLGHPDEFAQLVQSI 234
GIR+NT++PG +T L L + + N LA +P R+G +E A
Sbjct: 193 DRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPM-GRVGRAEEVAAAA--- 248
Query: 235 ITNPL---------INGEVIRIDG 249
L + G + +DG
Sbjct: 249 ----LFLASDDSSFVTGAELFVDG 268
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 187 bits (477), Expect = 4e-59
Identities = 61/268 (22%), Positives = 100/268 (37%), Gaps = 44/268 (16%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
+G V LVTG A G+G A V + G RV + D + + P D+
Sbjct: 26 FEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADL--------HLPGDLRE 77
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVNTVGT 119
G+LD+ VN AG+ G + + D+ L VN
Sbjct: 78 AAYADGLPGAVAAGLGRLDIVVNNAGVISR--------GRITETTDADWSLSLGVNVEAP 129
Query: 120 FNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARD 179
F + R + L+ G I+N AS G Y +K+ + +T M D
Sbjct: 130 FRICRAAIPLMAAAG------GGAIVNVASCWGLRPGPGHALYCLTKAALASLTQCMGMD 183
Query: 180 LAGAGIRVNTIAPGLFDTPLLSML-------NEKVRNFLARSIPAPQRLGHPDEFAQLVQ 232
A GIR+N + P +TP+L ++ L R++P R+ P++ A +V
Sbjct: 184 HAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRTVPL-GRIAEPEDIADVVL 242
Query: 233 -------SIITNPLINGEVIRIDGALRM 253
+ G ++ ++G +
Sbjct: 243 FLASDAARYLC-----GSLVEVNGGKAV 265
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 187 bits (477), Expect = 4e-59
Identities = 69/262 (26%), Positives = 111/262 (42%), Gaps = 30/262 (11%)
Query: 1 MLKGVVGLVTGGA-SGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL----GPDVKFA 55
+LKG V LVT A +G+G T R + EG VV+ D +L V+
Sbjct: 19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAV 78
Query: 56 PVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVN 115
DVTS E V + + G+LDV VN AG+ + + + +++ R+L V
Sbjct: 79 VCDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDM------TDEEWDRVLNVT 132
Query: 116 TVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLP 175
R A L + GVI+N AS+ + Q Q Y+A+K+G++ +T
Sbjct: 133 LTSVMRATR--AALRY---FRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRC 187
Query: 176 MARDLAGAGIRVNTIAPGLFDTPLL-SMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ-- 232
A + G+R+N ++P + L + ++ + LA R P E A +
Sbjct: 188 SAIEAVEFGVRINAVSPSIARHKFLEKTSSSELLDRLASDEAF-GRAAEPWEVAATIAFL 246
Query: 233 -----SIITNPLINGEVIRIDG 249
S +T GEV+ +
Sbjct: 247 ASDYSSYMT-----GEVVSVSS 263
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 186 bits (475), Expect = 5e-59
Identities = 56/256 (21%), Positives = 104/256 (40%), Gaps = 29/256 (11%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
L G LVTG G+G+ TV+ + G RVV ++ +S+ +E P ++ VD+
Sbjct: 5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRE-CPGIEPVCVDLGD 63
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
E ++A+ S G +D+ VN A ++ + + F R VN
Sbjct: 64 WEATERAL----GSVGPVDLLVNNAAVALLQPFLEV------TKEAFDRSFEVNLRAVIQ 113
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
V+++ A+ L G+ G I+N +S + + Y ++K + +T MA +L
Sbjct: 114 VSQIVAR-----GLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELG 168
Query: 182 GAGIRVNTIAPGLFDTPLLSML--NEKVRNFLARSIPAPQRLGHPDEFAQLV------QS 233
IRVN + P + T + + + IP + + + +S
Sbjct: 169 PHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPL-GKFAEVEHVVNAILFLLSDRS 227
Query: 234 IITNPLINGEVIRIDG 249
+ G + ++G
Sbjct: 228 ----GMTTGSTLPVEG 239
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 186 bits (475), Expect = 6e-59
Identities = 69/265 (26%), Positives = 115/265 (43%), Gaps = 34/265 (12%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVD 58
L V +VTG A+G+G+A + G VV+ DL + E+VA + G +
Sbjct: 10 LNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECN 69
Query: 59 VTSEEDVQKAVLLCKDSFGKLDVNVNCAGIS--CAFKIFNYNKGTVHSLDDFKRILLVNT 116
VT E+ + + D FGK+ V VN AG F + + DF+ +N
Sbjct: 70 VTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPFDM---------PMSDFEWAFKLNL 120
Query: 117 VGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPM 176
F +++L+A + + G I+N +S+A +Y +SK+ + +T +
Sbjct: 121 FSLFRLSQLAAPHMQKAG------GGAILNISSMAGENTNVRMASYGSSKAAVNHLTRNI 174
Query: 177 ARDLAGAGIRVNTIAPGLFDTPLL-SMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ--- 232
A D+ GIRVN IAPG T L ++L ++ + + P RLG + A
Sbjct: 175 AFDVGPMGIRVNAIAPGAIKTDALATVLTPEIERAMLKHTPL-GRLGEAQDIANAALFLC 233
Query: 233 ----SIITNPLINGEVIRIDGALRM 253
+ I+ G+V+ + G
Sbjct: 234 SPAAAWIS-----GQVLTVSGGGVQ 253
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 185 bits (473), Expect = 9e-59
Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 29/256 (11%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
G+ LVTG G+G+ TV+ + G +VV S+ S+AKE P ++ VD+
Sbjct: 5 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE-CPGIEPVCVDLGD 63
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
+ +KA+ G +D+ VN A + + + F R VN F
Sbjct: 64 WDATEKAL----GGIGPVDLLVNNAALVIMQPFLEV------TKEAFDRSFSVNLRSVFQ 113
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
V+++ A+ + G+ G I+N +S+ A+ + YS++K + +T MA +L
Sbjct: 114 VSQMVAR-----DMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELG 168
Query: 182 GAGIRVNTIAPGLFDTPLLSML--NEKVRNFLARSIPAPQRLGHPDEFAQLV------QS 233
IRVN++ P + T + + + + L P ++ ++ + +S
Sbjct: 169 PHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPL-RKFAEVEDVVNSILFLLSDRS 227
Query: 234 IITNPLINGEVIRIDG 249
+G I +D
Sbjct: 228 ----ASTSGGGILVDA 239
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 185 bits (471), Expect = 1e-58
Identities = 64/266 (24%), Positives = 102/266 (38%), Gaps = 46/266 (17%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
LVTGG+ G+GKA VE +++ V+ + ++KF D+T
Sbjct: 2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINI------DIQQSFSAENLKFIKADLTK 55
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
++D+ + + K D AGI IF+ ++ K++L +N +
Sbjct: 56 QQDITNVLDIIK--NVSFDGIFLNAGILIKGSIFDI------DIESIKKVLDLNVWSSIY 107
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
+ + I+ S + + AY+ SK I MT +A DLA
Sbjct: 108 FIKGLENNLKVG--------ASIVFNGSDQCFIAKPNSFAYTLSKGAIAQMTKSLALDLA 159
Query: 182 GAGIRVNTIAPGLFDTPLLSML-----------NEKVRNFLARSIPAPQRLGHPDEFAQL 230
IRVNT+ PG DT L L ++ + + P R+ P E A+L
Sbjct: 160 KYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEFPL-NRIAQPQEIAEL 218
Query: 231 VQ-------SIITNPLINGEVIRIDG 249
V +T G +I IDG
Sbjct: 219 VIFLLSDKSKFMT-----GGLIPIDG 239
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 185 bits (473), Expect = 2e-58
Identities = 56/255 (21%), Positives = 100/255 (39%), Gaps = 22/255 (8%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL----GPDVKFAP 56
+G + LVTGG +G+G+ + + EG VV+ ++ A E+ G V+
Sbjct: 30 SGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVV 89
Query: 57 VDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLV 114
DV + V + F +LD+ VN AG N + + + + I+
Sbjct: 90 CDVGDPDQVAALFAAVRAEFARLDLLVNNAGS-------NVPPVPLEEVTFEQWNGIVAA 142
Query: 115 NTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTL 174
N G F + + +++ + G IIN SI+A + Y+A+K I G+T
Sbjct: 143 NLTGAFLCTQHAFRMM----KAQTPRGGRIINNGSISAQTPRPNSAPYTATKHAITGLTK 198
Query: 175 PMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSI 234
A D I I G T + + ++ V + A + + A+ V +
Sbjct: 199 STALDGRMHDIACGQIDIGNAATDMTARMSTGVLQ-ANGEVAA-EPTIPIEHIAEAVVYM 256
Query: 235 ITNPL---INGEVIR 246
+ PL + +
Sbjct: 257 ASLPLSANVLTMTVM 271
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 185 bits (471), Expect = 4e-58
Identities = 74/266 (27%), Positives = 118/266 (44%), Gaps = 37/266 (13%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVD 58
LKG LVTGG+ G+G A VE + G RV C E + + G +V+ + D
Sbjct: 19 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCD 78
Query: 59 VTSEEDVQKAVLLCKDSF-GKLDVNVNCAGISCAFKIFNYNKGTV-HSLDDFKRILLVNT 116
+ S + K + F GKL++ VN AG+ +K + D+ I+ N
Sbjct: 79 LLSRTERDKLMQTVAHVFDGKLNILVNNAGV-------VIHKEAKDFTEKDYNIIMGTNF 131
Query: 117 VGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPM 176
+++++++ L+ ++ G +I +SIA + YSASK I MT +
Sbjct: 132 EAAYHLSQIAYPLLKASQ------NGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSL 185
Query: 177 ARDLAGAGIRVNTIAPGLFDTPLLSML------NEKVRNFLARSIPAPQRLGHPDEFAQL 230
A + A IRVN++APG+ TPL+ ++ + P R G P E + L
Sbjct: 186 ACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPM-GRAGKPQEVSAL 244
Query: 231 VQ-------SIITNPLINGEVIRIDG 249
+ S IT G++I DG
Sbjct: 245 IAFLCFPAASYIT-----GQIIWADG 265
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 185 bits (472), Expect = 5e-58
Identities = 62/266 (23%), Positives = 99/266 (37%), Gaps = 31/266 (11%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL----GPDVKFAPV 57
+G V +TGG +GLGK + G + V+ ++ A+++ G V
Sbjct: 24 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQC 83
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH-SLDDFKRILLVNT 116
DV + VQ V G ++ +N A N+ T S + +K I +
Sbjct: 84 DVRDPDMVQNTVSELIKVAGHPNIVINNAAG-------NFISPTERLSPNAWKTITDIVL 136
Query: 117 VGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPM 176
GT V +L + ++ +I A G V +++K+G+ M+ +
Sbjct: 137 NGTAFVTLEIG-----KQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSL 191
Query: 177 ARDLAGAGIRVNTIAPGLFDTPL---LSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ- 232
A + G+R N I PG T + IP RLG +E A L
Sbjct: 192 AAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPC-GRLGTVEELANLAAF 250
Query: 233 --SIITNPL---INGEVIRIDGALRM 253
S ING VI+ DG +
Sbjct: 251 LCS----DYASWINGAVIKFDGGEEV 272
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 184 bits (469), Expect = 6e-58
Identities = 61/276 (22%), Positives = 98/276 (35%), Gaps = 42/276 (15%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL-----GPDVKFAP 56
L V +VTGG+SG+G ATVE ++ G V C + L G + +
Sbjct: 6 LSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASV 65
Query: 57 VDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNT 116
DV V+ C+ + G + VN AG + + + L +
Sbjct: 66 CDVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAET------TDEAWSEELQLKF 119
Query: 117 VGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPM 176
+ R + I+ S+ A + + VA SA+++G+ + M
Sbjct: 120 FSVIHPVRAFLPQLESRA------DAAIVCVNSLLASQPEPHMVATSAARAGVKNLVRSM 173
Query: 177 ARDLAGAGIRVNTIAPGLFDTPLLSMLNEK------------VRNFLARSIPAPQRLGHP 224
A + A G+RVN I GL ++ E + + IP RLG P
Sbjct: 174 AFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQIPL-GRLGKP 232
Query: 225 DEFAQLVQ-------SIITNPLINGEVIRIDGALRM 253
E A+ + + T G I + G L
Sbjct: 233 IEAARAILFLASPLSAYTT-----GSHIDVSGGLSR 263
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 183 bits (468), Expect = 1e-57
Identities = 71/267 (26%), Positives = 114/267 (42%), Gaps = 32/267 (11%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL----GPDVKFAP 56
+L+ V +TGG SG+G E +R G V+ + A++L G
Sbjct: 24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLS 83
Query: 57 VDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH-SLDDFKRILLVN 115
+DV + V AV FG++D+ +NCA N+ S + FK ++ ++
Sbjct: 84 MDVRAPPAVMAAVDQALKEFGRIDILINCAAG-------NFLCPAGALSFNAFKTVMDID 136
Query: 116 TVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLP 175
T GTFNV+R+ + + GVI+N + GQ+ QV ++K+ + MT
Sbjct: 137 TSGTFNVSRVLYEKFFRDH------GGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRH 190
Query: 176 MARDLAGAGIRVNTIAPGLFDTPLLS---MLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ 232
+A + IRVN++APG + + + P QRLG+ E A V
Sbjct: 191 LAVEWGPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASPL-QRLGNKTEIAHSVL 249
Query: 233 ---SIITNPL---INGEVIRIDGALRM 253
S PL + G V+ DG +
Sbjct: 250 YLAS----PLASYVTGAVLVADGGAWL 272
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 182 bits (465), Expect = 2e-57
Identities = 80/267 (29%), Positives = 124/267 (46%), Gaps = 34/267 (12%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAKEL---GPDVKFAPV 57
L+G V ++TG ++GLGK+ R E +VV+ + SV +E+ G +
Sbjct: 5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKG 64
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVN 115
DVT E DV V FGKLDV +N AG+ N + H SL D+ +++ N
Sbjct: 65 DVTVESDVINLVQSAIKEFGKLDVMINNAGL--------ENPVSSHEMSLSDWNKVIDTN 116
Query: 116 TVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLP 175
G F +R + + EN ++G +IN +S+ V Y+ASK G+ MT
Sbjct: 117 LTGAFLGSREAIKYFVEN-----DIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTET 171
Query: 176 MARDLAGAGIRVNTIAPGLFDTPLLS--MLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ- 232
+A + A GIRVN I PG +TP+ + + + R + IP +G P+E A +
Sbjct: 172 LALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPM-GYIGEPEEIAAVAAW 230
Query: 233 ------SIITNPLINGEVIRIDGALRM 253
S +T G + DG + +
Sbjct: 231 LASSEASYVT-----GITLFADGGMTL 252
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 182 bits (464), Expect = 3e-57
Identities = 62/261 (23%), Positives = 101/261 (38%), Gaps = 17/261 (6%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAKEL---GPDVKFAPV 57
LKG L+TG + G+G AT R G +V L + + G D F
Sbjct: 5 LKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAA 64
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTV 117
D+ + E Q+ V FG +DV +N AG + + ++ N
Sbjct: 65 DLATSEACQQLVDEFVAKFGGIDVLINNAGG-----LVGRKPLPEIDDTFYDAVMDANIR 119
Query: 118 GTFNVARLSAQLIHENKLNEDGLR-GVIINTASIAAYEG-QSGQVAYSASKSGIVGMTLP 175
+ L H + + +I+T SIA + G G Y A+K+ + +
Sbjct: 120 SVVMTTK--FALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGAGLYGAAKAFLHNVHKN 177
Query: 176 MARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ--- 232
G+R N ++PG DT + + VR+ ++ IP R G +E A
Sbjct: 178 WVDFHTKDGVRFNIVSPGTVDTAFHADKTQDVRDRISNGIPM-GRFGTAEEMAPAFLFFA 236
Query: 233 SIITNPLINGEVIRIDGALRM 253
S + + I G+V+ I+G
Sbjct: 237 SHLASGYITGQVLDINGGQYK 257
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 182 bits (464), Expect = 3e-57
Identities = 62/271 (22%), Positives = 112/271 (41%), Gaps = 37/271 (13%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL----GPDVKFAPV 57
+VTGG G+G A + G V + ++ V +++ G K
Sbjct: 12 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQC 71
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTV 117
DV++ + V K + G + + AG+S + +DF + VN
Sbjct: 72 DVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATEL------THEDFAFVYDVNVF 125
Query: 118 GTFNVAR-LSAQLIHENKLNEDGLRGVIINTASIAA-------YEGQSGQVAYSASKSGI 169
G FN R ++ + + + +G I+ T+S+++ G QV Y++SK+
Sbjct: 126 GVFNTCRAVAKLWLQKQQ------KGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAAC 179
Query: 170 VGMTLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQ 229
+ +A + A AGIRVN ++PG +T + +++K+R+ A +IP R P+E
Sbjct: 180 SNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNIPL-NRFAQPEEMTG 238
Query: 230 LVQ-------SIITNPLINGEVIRIDGALRM 253
+ +T G IDG +
Sbjct: 239 QAILLLSDHATYMT-----GGEYFIDGGQLI 264
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 181 bits (461), Expect = 9e-57
Identities = 58/250 (23%), Positives = 104/250 (41%), Gaps = 24/250 (9%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
+ V ++TG + G+G V RVV S+ PD+ D++
Sbjct: 26 NQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSR------SIKPSADPDIHTVAGDISK 79
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
E + V + FG++D VN AG+ A + +D+ L VN G F+
Sbjct: 80 PETADRIVREGIERFGRIDSLVNNAGVFLAKPFVEM------TQEDYDHNLGVNVAGFFH 133
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQV--AYSASKSGIVGMTLPMARD 179
+ + +A + + G I++ + + G S +K G+ +T +A +
Sbjct: 134 ITQRAAAEMLKQG------SGHIVSITTSLVDQPMVGMPSALASLTKGGLNAVTRSLAME 187
Query: 180 LAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSIITNPL 239
+ +G+RVN ++PG+ TP M + + LA P R+G + V +
Sbjct: 188 FSRSGVRVNAVSPGVIKTP---MHPAETHSTLAGLHPV-GRMGEIRDVVDAVLYLEHAGF 243
Query: 240 INGEVIRIDG 249
I GE++ +DG
Sbjct: 244 ITGEILHVDG 253
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 180 bits (459), Expect = 2e-56
Identities = 70/262 (26%), Positives = 104/262 (39%), Gaps = 36/262 (13%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
+G +V GG G+G ATV R+V G V+L S + +E GP V D+
Sbjct: 6 YQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIAD 65
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVNTVGT 119
++ + G +D+ AG+ S + R VNT G
Sbjct: 66 LNEIAVLGAAAGQTLGAIDLLHINAGV--------SELEPFDQVSEASYDRQFAVNTKGA 117
Query: 120 FNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARD 179
F + LI E G I+ T+S+A G G YSASK+ +V +A +
Sbjct: 118 FFTVQRLTPLIREG--------GSIVFTSSVADEGGHPGMSVYSASKAALVSFASVLAAE 169
Query: 180 LAGAGIRVNTIAPGLFDTPLLSML------NEKVRNFLARSIPAPQRLGHPDEFAQLVQ- 232
L GIRVN+++PG DTP + + + P +R G DE A+ V
Sbjct: 170 LLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITPM-KRNGTADEVARAVLF 228
Query: 233 -----SIITNPLINGEVIRIDG 249
+ T G + +DG
Sbjct: 229 LAFEATFTT-----GAKLAVDG 245
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 181 bits (462), Expect = 2e-56
Identities = 70/273 (25%), Positives = 118/273 (43%), Gaps = 40/273 (14%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL--------GPDV 52
+L+G V +VTGGA+G+GKA V+ ++ G VV+ +S A EL V
Sbjct: 15 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARV 74
Query: 53 KFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH-SLDDFKRI 111
++ +EE+V V D+FGK++ VN G + H S + +
Sbjct: 75 IPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGG-------QFLSPAEHISSKGWHAV 127
Query: 112 LLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVG 171
L N GTF + + + G I+N + G V A+++G+
Sbjct: 128 LETNLTGTFYMCKAVYSSWMKEH------GGSIVNI-IVPTKAGFPLAVHSGAARAGVYN 180
Query: 172 MTLPMARDLAGAGIRVNTIAPGLFDTP----LLSMLNEKVRNFLARSIPAPQRLGHPDEF 227
+T +A + A +GIR+N +APG+ + + + IPA +R+G P+E
Sbjct: 181 LTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPA-KRIGVPEEV 239
Query: 228 AQLVQ-------SIITNPLINGEVIRIDGALRM 253
+ +V S IT G+ + +DG +
Sbjct: 240 SSVVCFLLSPAASFIT-----GQSVDVDGGRSL 267
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 180 bits (458), Expect = 2e-56
Identities = 74/269 (27%), Positives = 118/269 (43%), Gaps = 38/269 (14%)
Query: 6 VGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVDVTSE 62
V LVTG G+GKA R+V++G V + D + ++VA E+ G VDV+
Sbjct: 4 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDR 63
Query: 63 EDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFNV 122
+ V AV + + G DV VN AG++ + I + + + ++ +N G
Sbjct: 64 DQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESI------TPEIVDKVYNINVKGVIWG 117
Query: 123 ARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLAG 182
+ + + ++G G IIN S A + G YS+SK + G+T ARDLA
Sbjct: 118 IQAAVE-----AFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAP 172
Query: 183 AGIRVNTIAPGLFDTPLLSMLNEKVRNF-----------LARSIPAPQRLGHPDEFAQLV 231
GI VN PG+ TP+ + ++ +V A+ I RL P++ A V
Sbjct: 173 LGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITL-GRLSEPEDVAACV 231
Query: 232 Q-------SIITNPLINGEVIRIDGALRM 253
+T G+ + IDG +
Sbjct: 232 SYLASPDSDYMT-----GQSLLIDGGMVF 255
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 179 bits (457), Expect = 3e-56
Identities = 68/251 (27%), Positives = 112/251 (44%), Gaps = 22/251 (8%)
Query: 6 VGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDV 65
+VTGG G+GK + G +V D+ AKE P++ + DV +
Sbjct: 4 GVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKE-RPNLFYFHGDVADPLTL 62
Query: 66 QKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFNVARL 125
+K V + ++DV VN A + I + ++F IL V + ++RL
Sbjct: 63 KKFVEYAMEKLQRIDVLVNNACRG-SKGIL-----SSLLYEEFDYILSVGLKAPYELSRL 116
Query: 126 SAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLAGAGI 185
+ +N +G IIN AS A++ + AY+++K GIV +T +A L +
Sbjct: 117 CRDELIKN-------KGRIINIASTRAFQSEPDSEAYASAKGGIVALTHALAMSLGP-DV 168
Query: 186 RVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSIITNPLINGEVI 245
VN IAPG + ++ +IPA ++G P + + +V + I GE I
Sbjct: 169 LVNCIAPGWINVTEQQEFTQEDCA----AIPA-GKVGTPKDISNMVLFLCQQDFITGETI 223
Query: 246 RIDG--ALRMI 254
+DG + RMI
Sbjct: 224 IVDGGMSKRMI 234
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 179 bits (457), Expect = 4e-56
Identities = 69/264 (26%), Positives = 112/264 (42%), Gaps = 30/264 (11%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVD 58
LK LVTGG G+G A VE G + C E + G V + D
Sbjct: 12 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCD 71
Query: 59 VTSEEDVQKAVLLCKDSFG-KLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTV 117
+ + +K + FG KLD+ +N G + +Y + +DF + N
Sbjct: 72 ASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDY------TAEDFSFHISTNLE 125
Query: 118 GTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMA 177
+++++L+ L+ + G II +SIA S YSA+K + + +A
Sbjct: 126 SAYHLSQLAHPLLKASG------CGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLA 179
Query: 178 RDLAGAGIRVNTIAPGLFDTPLL-SMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ---- 232
+ A GIR N +AP + TPL ++ +++ + + P R G P+E + LV
Sbjct: 180 CEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRKPL-GRFGEPEEVSSLVAFLCM 238
Query: 233 ---SIITNPLINGEVIRIDGALRM 253
S IT G+ I +DG L +
Sbjct: 239 PAASYIT-----GQTICVDGGLTV 257
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 180 bits (458), Expect = 4e-56
Identities = 58/260 (22%), Positives = 103/260 (39%), Gaps = 29/260 (11%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVD 58
LKG V VTG + G+G A E + G V + E G K +
Sbjct: 32 LKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCN 91
Query: 59 VTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVG 118
++ + V++ + + FG +DV V AG++ + V + D + +I+ V+ G
Sbjct: 92 ISDPKSVEETISQQEKDFGTIDVFVANAGVT----WTQGPEIDVDNYDSWNKIISVDLNG 147
Query: 119 TFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSG--QVAYSASKSGIVGMTLPM 176
+ + ++ +N +G +I T+SI+ Q Y+ +K+ + +
Sbjct: 148 VYYCSHNIGKIFKKNG------KGSLIITSSISGKIVNIPQLQAPYNTAKAACTHLAKSL 201
Query: 177 ARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ---- 232
A + A RVNTI+PG DT + ++ ++ + P R G E
Sbjct: 202 AIEWAPFA-RVNTISPGYIDTDITDFASKDMKAKWWQLTPL-GREGLTQELVGGYLYLAS 259
Query: 233 ---SIITNPLINGEVIRIDG 249
+ T G + IDG
Sbjct: 260 NASTFTT-----GSDVVIDG 274
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 179 bits (457), Expect = 5e-56
Identities = 74/260 (28%), Positives = 115/260 (44%), Gaps = 30/260 (11%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVD 58
L G L+TG ++G+GK G +V + + + VA E+ G D
Sbjct: 30 LSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCD 89
Query: 59 VTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVG 118
VT + V+ + G +D+ V AGI + + L++F+RI N G
Sbjct: 90 VTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDM------PLEEFQRIQDTNVTG 143
Query: 119 TFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQ--VAYSASKSGIVGMTLPM 176
F A+ +A+ + + GL G II TAS++ + Q Y SK+ +V +T M
Sbjct: 144 VFLTAQAAARAMVDQ-----GLGGTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTKAM 198
Query: 177 ARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ---- 232
A +LA IRVN+++PG T L+ L + + + IP R+G P+E L
Sbjct: 199 AVELAPHQIRVNSVSPGYIRTELVEPLADYHALWEPK-IPL-GRMGRPEELTGLYLYLAS 256
Query: 233 ---SIITNPLINGEVIRIDG 249
S +T G I IDG
Sbjct: 257 AASSYMT-----GSDIVIDG 271
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 179 bits (456), Expect = 8e-56
Identities = 67/277 (24%), Positives = 111/277 (40%), Gaps = 39/277 (14%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL------GPDVKFA 55
V ++TG ++G+G+AT REG +V + E +++ +V
Sbjct: 4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSV 63
Query: 56 PVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVN 115
DVT++ + + FGKLD+ VN AG + GT S++ + L +N
Sbjct: 64 VADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSK--TGTAQSIESYDATLNLN 121
Query: 116 TVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAA-YEGQSGQVAYSASKSGIVGMTL 174
+ + + + K G I+N +SIA+ YS +K+ I T
Sbjct: 122 LRSVIALTKKAVPHLSSTK-------GEIVNISSIASGLHATPDFPYYSIAKAAIDQYTR 174
Query: 175 PMARDLAGAGIRVNTIAPGLFDTPLLSMLN---------EKVRNFLARSIPAPQRLGHPD 225
A DL GIRVN+I+PGL T S + + +PA +G P
Sbjct: 175 NTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPA-GVMGQPQ 233
Query: 226 EFAQLVQ--------SIITNPLINGEVIRIDGALRMI 254
+ A+++ S I G + +DG +I
Sbjct: 234 DIAEVIAFLADRKTSSYII-----GHQLVVDGGSSLI 265
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 177 bits (450), Expect = 3e-55
Identities = 47/254 (18%), Positives = 87/254 (34%), Gaps = 36/254 (14%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
LV GG+ LG V+ + + D + + + +
Sbjct: 20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHS---------FTIKDSG 70
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
EE+++ + K+D V AG + L K ++ +N F
Sbjct: 71 EEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNAS-----SDEFLKSVKGMIDMNLYSAFA 125
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
A + A+L+++ G+ + T + AA SG +AY A+K+ + +A +
Sbjct: 126 SAHIGAKLLNQG--------GLFVLTGASAALNRTSGMIAYGATKAATHHIIKDLASENG 177
Query: 182 GA--GIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSIITNP- 238
G G I P DTP R +++ E A+ + TN
Sbjct: 178 GLPAGSTSLGILPVTLDTPT-------NRKYMSD--ANFDDWTPLSEVAEKLFEWSTNSD 228
Query: 239 --LINGEVIRIDGA 250
NG +++ +
Sbjct: 229 SRPTNGSLVKFETK 242
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 176 bits (449), Expect = 4e-55
Identities = 64/262 (24%), Positives = 106/262 (40%), Gaps = 29/262 (11%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
L G LVTG A G+GKA R+ +G V++ D+ ++ A +G + D++
Sbjct: 4 LAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADISD 63
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGI---SCAFKIFNYNKGTVHSLDDFKRILLVNTVG 118
V+ + G +D+ VN A I + LD +++I+ VN G
Sbjct: 64 PGSVKALFAEIQALTGGIDILVNNASIVPFVAWDDV---------DLDHWRKIIDVNLTG 114
Query: 119 TFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMAR 178
TF V R + G G +I+ AS + G AY A+K G++G T +A
Sbjct: 115 TFIVTRAGTDQMRAA-----GKAGRVISIASNTFFAGTPNMAAYVAAKGGVIGFTRALAT 169
Query: 179 DLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ------ 232
+L I N + PGL ++ + + A + G P+ A +V
Sbjct: 170 ELGKYNITANAVTPGLIESDGVKASPHNEAFGFVEMLQAMKGKGQPEHIADVVSFLASDD 229
Query: 233 -SIITNPLINGEVIRIDGALRM 253
IT G+ + +D +
Sbjct: 230 ARWIT-----GQTLNVDAGMVR 246
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 176 bits (449), Expect = 5e-55
Identities = 66/265 (24%), Positives = 119/265 (44%), Gaps = 36/265 (13%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVD 58
L+G LVTGG+ G+G VE + G V C E + G V+ + D
Sbjct: 7 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCD 66
Query: 59 VTSEEDVQKAVLLCKDSF-GKLDVNVNCAGISCAFKIFNYNKGTV-HSLDDFKRILLVNT 116
++S + Q+ + + F GKL++ VN AGI K ++++D+ I+ +N
Sbjct: 67 LSSRSERQELMNTVANHFHGKLNILVNNAGI-------VIYKEAKDYTVEDYSLIMSINF 119
Query: 117 VGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPM 176
++++ L+ + ++ RG ++ +S++ + Y A+K + +T +
Sbjct: 120 EAAYHLSVLAHPFLKASE------RGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCL 173
Query: 177 ARDLAGAGIRVNTIAPGLFDTPLLSML-----NEKVRNFLARSIPAPQRLGHPDEFAQLV 231
A + A IRVN + PG+ T L+ M ++ N L +R+G P E A +V
Sbjct: 174 AFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCAL-RRMGEPKELAAMV 232
Query: 232 Q-------SIITNPLINGEVIRIDG 249
S +T G++I +DG
Sbjct: 233 AFLCFPAASYVT-----GQIIYVDG 252
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 176 bits (448), Expect = 6e-55
Identities = 50/255 (19%), Positives = 90/255 (35%), Gaps = 26/255 (10%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL----GPDVKFAPV 57
L + G+G T +V+ + + ++A+ ++ F
Sbjct: 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTY 62
Query: 58 DVT-SEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNT 116
DVT + +K + D +D+ +N AGI +R + +N
Sbjct: 63 DVTVPVAESKKLLKKIFDQLKTVDILINGAGIL--------------DDHQIERTIAINF 108
Query: 117 VGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPM 176
G N + K G G+I N S+ + YSASK+ +V T +
Sbjct: 109 TGLVNTTTAILDFWDKRK---GGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSL 165
Query: 177 ARDLAGAGIRVNTIAPGLFDTPLLSMLNE--KVRNFLARSIPAPQRLGHPDEFAQLVQSI 234
A+ G+ +I PG+ TPL+ N V +A + + ++ Q
Sbjct: 166 AKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLS-HPTQTSEQCGQNFVKA 224
Query: 235 ITNPLINGEVIRIDG 249
I NG + ++D
Sbjct: 225 IEAN-KNGAIWKLDL 238
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 177 bits (451), Expect = 7e-55
Identities = 57/272 (20%), Positives = 113/272 (41%), Gaps = 31/272 (11%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL------GPDVKFA 55
G ++TG ++G+G++ +EG +V + E +++ +
Sbjct: 24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAV 83
Query: 56 PVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVN 115
DVT + FGK+D+ VN AG + + + T ++ +++ +N
Sbjct: 84 VADVTEASGQDDIINTTLAKFGKIDILVNNAGAN----LADGTANTDQPVELYQKTFKLN 139
Query: 116 TVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAA-YEGQSGQVAYSASKSGIVGMTL 174
+ + + + + + K G I+N +SI A + SG Y+ +K+ + T
Sbjct: 140 FQAVIEMTQKTKEHLIKTK-------GEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTR 192
Query: 175 PMARDLAGAGIRVNTIAPGLFDTPLLSMLN------EKVRNFLAR---SIPAPQRLGHPD 225
A DL G+RVN+++PG T + + +K+ +F+ IP G P+
Sbjct: 193 CTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPV-GHCGKPE 251
Query: 226 EFAQLVQ---SIITNPLINGEVIRIDGALRMI 254
E A ++ + I G+ I DG ++
Sbjct: 252 EIANIIVFLADRNLSSYIIGQSIVADGGSTLV 283
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 176 bits (449), Expect = 9e-55
Identities = 65/272 (23%), Positives = 114/272 (41%), Gaps = 29/272 (10%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL------GPDVKFA 55
++TG ++G+G+ T +EG V + + E + + V
Sbjct: 4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSV 63
Query: 56 PVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVN 115
DVT+E+ + + FGK+DV VN AG + GT +D + + L +N
Sbjct: 64 VADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGT--TGTDQGIDIYHKTLKLN 121
Query: 116 TVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAA-YEGQSGQVAYSASKSGIVGMTL 174
+ + + +K G I+N +SI A + Q + Y+ +K+ + T
Sbjct: 122 LQAVIEMTKKVKPHLVASK-------GEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTR 174
Query: 175 PMARDLAGAGIRVNTIAPGLFDTPLLSMLN------EKVRNFLAR---SIPAPQRLGHPD 225
A DLA GIRVN+++PG+ +T + + +K NF+A IP G P+
Sbjct: 175 STAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPI-GAAGKPE 233
Query: 226 EFAQLVQ---SIITNPLINGEVIRIDGALRMI 254
A ++ + I G+ I DG ++
Sbjct: 234 HIANIILFLADRNLSFYILGQSIVADGGTSLV 265
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 175 bits (447), Expect = 1e-54
Identities = 66/264 (25%), Positives = 105/264 (39%), Gaps = 35/264 (13%)
Query: 2 LKGVVGLVTG--GASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAKEL----GPDVKF 54
LKG V +VTG G G+G G V + ++G E KEL G K
Sbjct: 18 LKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKA 77
Query: 55 APVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLV 114
V S E +K V FG++D + AG + I + S++ + ++ V
Sbjct: 78 YKCQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSGILDG------SVEAWNHVVQV 131
Query: 115 NTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEG--QSGQVAYSASKSGIVGM 172
+ GTF+ A+ E G ++ TAS++ + Q +Y+ +K+G + M
Sbjct: 132 DLNGTFHCAKAVGHHFKERG------TGSLVITASMSGHIANFPQEQTSYNVAKAGCIHM 185
Query: 173 TLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ 232
+A + RVN+I+PG DT L + ++ + IP R G E
Sbjct: 186 ARSLANEWRD-FARVNSISPGYIDTGLSDFVPKETQQLWHSMIPM-GRDGLAKELKGAYV 243
Query: 233 -------SIITNPLINGEVIRIDG 249
+ T G + IDG
Sbjct: 244 YFASDASTYTT-----GADLLIDG 262
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 174 bits (444), Expect = 3e-54
Identities = 56/273 (20%), Positives = 105/273 (38%), Gaps = 43/273 (15%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAKEL---GPDVKFAP 56
M + LVTG + G+GKA R+ G +V+ + + A+E+ G V
Sbjct: 1 MEQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVK 60
Query: 57 VDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSL------DDFKR 110
+V +++ ++FG+LDV VN A V +
Sbjct: 61 ANVGQPAKIKEMFQQIDETFGRLDVFVNNAAS------------GVLRPVMELEETHWDW 108
Query: 111 ILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIV 170
+ +N A+ +A+L+ +N G I++ +S+ + SK+ +
Sbjct: 109 TMNINAKALLFCAQEAAKLMEKNG------GGHIVSISSLGSIRYLENYTTVGVSKAALE 162
Query: 171 GMTLPMARDLAGAGIRVNTIAPGLFDTPLLSML--NEKVRNFLARSIPAPQRLGHPDEFA 228
+T +A +L+ I VN ++ G DT L E + ++ PA R+ +
Sbjct: 163 ALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNTPA-GRMVEIKDMV 221
Query: 229 QLVQ-------SIITNPLINGEVIRIDGALRMI 254
V+ +I G+ I +DG ++
Sbjct: 222 DTVEFLVSSKADMIR-----GQTIIVDGGRSLL 249
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 174 bits (444), Expect = 3e-54
Identities = 75/271 (27%), Positives = 122/271 (45%), Gaps = 40/271 (14%)
Query: 6 VGLVTGGASGLGKATVERIVREGGRVVLCDLPTSE--GESVAKEL---GPDVKFAPVDVT 60
V +VTGGA G+G+ E++ +G + + DLP E K + F +DVT
Sbjct: 4 VAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVT 63
Query: 61 SEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTF 120
+ + A+ + G DV VN AGI+ + + +D K+I VN F
Sbjct: 64 DKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEV------TEEDLKQIYSVNVFSVF 117
Query: 121 NVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDL 180
+ +++ K +E G++G IIN ASIAA +G AYS +K + G+T A++L
Sbjct: 118 FGIQAASR-----KFDELGVKGKIINAASIAAIQGFPILSAYSTTKFAVRGLTQAAAQEL 172
Query: 181 AGAGIRVNTIAPGLFDTPLLSMLNEKVRNF-----------LARSIPAPQRLGHPDEFAQ 229
A G VN APG+ T + ++ ++ + SI R P++ A
Sbjct: 173 APKGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSSIAL-GRPSVPEDVAG 231
Query: 230 LVQ-------SIITNPLINGEVIRIDGALRM 253
LV + +T G+V+ +DG +
Sbjct: 232 LVSFLASENSNYVT-----GQVMLVDGGMLY 257
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 173 bits (442), Expect = 4e-54
Identities = 46/256 (17%), Positives = 89/256 (34%), Gaps = 30/256 (11%)
Query: 6 VGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDV 65
+ LVT G A VE + ++G VV D ++ A+ + + +E+
Sbjct: 3 IALVTHARHFAGPAAVEALTQDGYTVVCHDASFADA---AERQRFESENPGTIALAEQKP 59
Query: 66 QKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFNVARL 125
++ V +D V+ I + N S D +++ ++ + +
Sbjct: 60 ERLVDATLQHGEAIDTIVSNDYIP---RPMNRLPLEGTSEADIRQMFEALSIFPILLLQS 116
Query: 126 SAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLAGAGI 185
+ + +I S + + Y +++ V + A+ L+ GI
Sbjct: 117 AIAPLRAAG------GASVIFITSSVGKKPLAYNPLYGPARAATVALVESAAKTLSRDGI 170
Query: 186 RVNTIAPGLFDTPLLSML-----NEKVRNFLARSIPAPQRLGHPDEFAQLVQ-------S 233
+ I P F+ P N ++R + R +P RLG PDE L+ +
Sbjct: 171 LLYAIGPNFFNNPTYFPTSDWENNPELRERVDRDVPL-GRLGRPDEMGALITFLASRRAA 229
Query: 234 IITNPLINGEVIRIDG 249
I G+ G
Sbjct: 230 PIV-----GQFFAFTG 240
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 174 bits (443), Expect = 5e-54
Identities = 62/271 (22%), Positives = 100/271 (36%), Gaps = 41/271 (15%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL----GPDVKFAPV 57
+ G V ++TG +SG+G A E +EG +VL A+ L G V V
Sbjct: 5 ISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAV 64
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTV 117
DV + E V V + SFG D+ VN AG I + + ++ + +
Sbjct: 65 DVATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEA------ADEKWQFYWELLVM 118
Query: 118 GTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMA 177
+AR + G II+ ASI A + + Y+ +K+ ++ + +A
Sbjct: 119 AAVRLARGLVPGMRARG------GGAIIHNASICAVQPLWYEPIYNVTKAALMMFSKTLA 172
Query: 178 RDLAGAGIRVNTIAPGLFDTPLLSML------------NEKVRNFLARSIPAPQRLGHPD 225
++ IRVN I PGL TP +++ P +R P+
Sbjct: 173 TEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEHAPI-KRFASPE 231
Query: 226 EFAQLVQ-------SIITNPLINGEVIRIDG 249
E A + G +DG
Sbjct: 232 ELANFFVFLCSERATYSV-----GSAYFVDG 257
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 173 bits (442), Expect = 1e-53
Identities = 62/262 (23%), Positives = 107/262 (40%), Gaps = 21/262 (8%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAKEL---GPDVKFAPV 57
V +VTGG G+G + G + + + +EG V EL G V F
Sbjct: 27 KARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRA 86
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVN 115
D+ Q V FG++D VN AGI+ + + ++F I+ VN
Sbjct: 87 DLADLSSHQATVDAVVAEFGRIDCLVNNAGIA------SIVRDDFLDLKPENFDTIVGVN 140
Query: 116 TVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLP 175
GT + + + + IIN S++A ++ Y SK+G+ +
Sbjct: 141 LRGTVFFTQAVLKAMLASDARA---SRSIINITSVSAVMTSPERLDYCMSKAGLAAFSQG 197
Query: 176 MARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRN-FLARSIPAPQRLGHPDEFAQLVQSI 234
+A LA GI V + PG+ + + + ++ K + +P +R G P++ +V +
Sbjct: 198 LALRLAETGIAVFEVRPGIIRSDMTAAVSGKYDGLIESGLVPM-RRWGEPEDIGNIV-AG 255
Query: 235 ITNPL---INGEVIRIDGALRM 253
+ G VI+ DG L +
Sbjct: 256 LAGGQFGFATGSVIQADGGLSI 277
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 171 bits (436), Expect = 3e-53
Identities = 65/271 (23%), Positives = 98/271 (36%), Gaps = 46/271 (16%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
G VTG G+G AT V G +V D + +DV
Sbjct: 5 FSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQ-------AFTQEQYPFATEVMDVAD 57
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVNTVGT 119
V + +LD VN AGI G S +D+++ VN G
Sbjct: 58 AAQVAQVCQRLLAETERLDALVNAAGILRM--------GATDQLSKEDWQQTFAVNVGGA 109
Query: 120 FNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARD 179
FN+ + + + G I+ AS AA+ + G AY ASK+ + + L + +
Sbjct: 110 FNLFQQTMNQFRRQR------GGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLE 163
Query: 180 LAGAGIRVNTIAPGLFDTPLLSMLNEK----------VRNFLARSIPAPQRLGHPDEFAQ 229
LAG+G+R N ++PG DT + L IP ++ P E A
Sbjct: 164 LAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPL-GKIARPQEIAN 222
Query: 230 LVQ-------SIITNPLINGEVIRIDGALRM 253
+ S IT + I +DG +
Sbjct: 223 TILFLASDLASHIT-----LQDIVVDGGSTL 248
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 171 bits (435), Expect = 3e-53
Identities = 54/257 (21%), Positives = 94/257 (36%), Gaps = 30/257 (11%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
+ +VTG SGLG+A +V G +V + + LG V D+
Sbjct: 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAH 60
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVNTVGT 119
EDV A + G ++ ++CAG G V + + +R++ N V T
Sbjct: 61 HEDVDVAFAAAVEWGGLPELVLHCAGTGEF--------GPVGVYTAEQIRRVMESNLVST 112
Query: 120 FNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARD 179
VA+ + +LI E GV+ N S AA G++ + Y ASK G+ G + +
Sbjct: 113 ILVAQQTVRLIGER-------GGVLANVLSSAAQVGKANESLYCASKWGMRGFLESLRAE 165
Query: 180 LAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSIITNP- 238
L + +R+ + P + + P P++ A + +
Sbjct: 166 LKDSPLRLVNLYPSGIRSEFWDNTDH----------VDPSGFMTPEDAAAYMLDALEARS 215
Query: 239 --LINGEVIRIDGALRM 253
+ I +
Sbjct: 216 SCHVTDLFIGRNEGHHH 232
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 168 bits (429), Expect = 3e-52
Identities = 84/262 (32%), Positives = 128/262 (48%), Gaps = 34/262 (12%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
LK L+TG A G+G+AT+E +EG R+V CD+ A+ +G +DV
Sbjct: 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVG--AHPVVMDVAD 60
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGI---SCAFKIFNYNKGTVHSLDDFKRILLVNTVG 118
V++ G+LD V+ AGI + +K+ L+D++ +L VN G
Sbjct: 61 PASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKM---------PLEDWELVLRVNLTG 111
Query: 119 TFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMAR 178
+F VA+ +++ + E G I+ TAS G GQ Y+AS +G+VG+T +A
Sbjct: 112 SFLVAKAASEAMREKN------PGSIVLTASRVYL-GNLGQANYAASMAGVVGLTRTLAL 164
Query: 179 DLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ------ 232
+L GIRVNT+APG +T + + + EKVR + P R G P E A
Sbjct: 165 ELGRWGIRVNTLAPGFIETRMTAKVPEKVREKAIAATPL-GRAGKPLEVAYAALFLLSDE 223
Query: 233 -SIITNPLINGEVIRIDGALRM 253
S IT G+V+ +DG +
Sbjct: 224 SSFIT-----GQVLFVDGGRTI 240
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 170 bits (432), Expect = 4e-52
Identities = 71/277 (25%), Positives = 105/277 (37%), Gaps = 43/277 (15%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPV 57
M + VTG +SG+G A + G V C + L G DV +
Sbjct: 21 MSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSC 80
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGIS---CAFKIFNYNKGTVHSLDDFKRILLV 114
DVTS ++V AV + FG + + VN AG + + + +L
Sbjct: 81 DVTSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETADL---------DDALWADVLDT 131
Query: 115 NTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTL 174
N G F V R + + G I+N AS +G Y+ASK G+VG T
Sbjct: 132 NLTGVFRVTREVLRAGGMREAG----WGRIVNIASTGGKQGVMYAAPYTASKHGVVGFTK 187
Query: 175 PMARDLAGAGIRVNTIAPGLFDTPLL-----------SMLNEKVRNFLARSIPAPQRLGH 223
+ +LA GI VN + PG +TP+ + ++V IP R
Sbjct: 188 SVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAKIPL-GRYST 246
Query: 224 PDEFAQLVQ-------SIITNPLINGEVIRIDGALRM 253
P+E A LV + IT + + + G L
Sbjct: 247 PEEVAGLVGYLVTDAAASIT-----AQALNVCGGLGN 278
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 168 bits (428), Expect = 7e-52
Identities = 60/259 (23%), Positives = 99/259 (38%), Gaps = 29/259 (11%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL-GPDVKFAPVDVT 60
L G VTG SG+G G R++L D + + A+EL DVT
Sbjct: 9 LDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADVT 68
Query: 61 SEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTF 120
E + A ++ + + VN AGI+ +++++ VN G F
Sbjct: 69 DAEAMTAAAAEA-EAVAPVSILVNSAGIARLHDALE------TDDATWRQVMAVNVDGMF 121
Query: 121 NVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQ--VAYSASKSGIVGMTLPMAR 178
+R + + G I+N S++ Q +Y ASK + +T +A
Sbjct: 122 WASRAFGRAMVARG------AGAIVNLGSMSGTIVNRPQFASSYMASKGAVHQLTRALAA 175
Query: 179 DLAGAGIRVNTIAPGLFDTPLLSML--NEKVRNFLARSIPAPQRLGHPDEFAQLV----- 231
+ AG G+RVN +APG T + + ++ P R G P E A
Sbjct: 176 EWAGRGVRVNALAPGYVATEMTLKMRERPELFETWLDMTPM-GRCGEPSEIAAAALFLAS 234
Query: 232 -QSIITNPLINGEVIRIDG 249
+ + G ++ +DG
Sbjct: 235 PAA----SYVTGAILAVDG 249
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 168 bits (428), Expect = 7e-52
Identities = 67/264 (25%), Positives = 100/264 (37%), Gaps = 30/264 (11%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL----GPDVKFAPV 57
L+G +VTGG G+G+ R G V + T++ ++ +L V
Sbjct: 8 LQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQT 67
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTV 117
DV+ + FG +DV AG+ F + + I VN
Sbjct: 68 DVSDRAQCDALAGRAVEEFGGIDVVCANAGV------FPDAPLATMTPEQLNGIFAVNVN 121
Query: 118 GTFNVARLSAQLIHENKLNEDGLRGVIINTASI-AAYEGQSGQVAYSASKSGIVGMTLPM 176
GTF + + + G ++ T+SI G G Y A+K+ +G
Sbjct: 122 GTFYAVQACLDALIASG------SGRVVLTSSITGPITGYPGWSHYGATKAAQLGFMRTA 175
Query: 177 ARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ---- 232
A +LA I VN I PG T L E+ +ARSIPA LG P++ L
Sbjct: 176 AIELAPHKITVNAIMPGNIMTEGLLENGEEYIASMARSIPA-GALGTPEDIGHLAAFLAT 234
Query: 233 ---SIITNPLINGEVIRIDGALRM 253
IT G+ I +DG +
Sbjct: 235 KEAGYIT-----GQAIAVDGGQVL 253
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 168 bits (428), Expect = 7e-52
Identities = 46/253 (18%), Positives = 91/253 (35%), Gaps = 21/253 (8%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFA-PVDVT 60
L L+TG + +G R++ G RV++ + EL A D +
Sbjct: 25 LSSAPILITGASQRVGLHCALRLLEHGHRVIISY---RTEHASVTELRQAGAVALYGDFS 81
Query: 61 SEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTF 120
E + + L K L V+ A + D+F R+ V+ + +
Sbjct: 82 CETGIMAFIDLLKTQTSSLRAVVHNASE-------WLAETPGEEADNFTRMFSVHMLAPY 134
Query: 121 NVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDL 180
+ L+ ++ I++ + +G S +AY A+K+G+ +TL A
Sbjct: 135 LINLHCEPLLTASE------VADIVHISDDVTRKGSSKHIAYCATKAGLESLTLSFAARF 188
Query: 181 AGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSIITNPLI 240
A ++VN IAP L + R + Q ++ ++ + +
Sbjct: 189 A-PLVKVNGIAPALLMFQPKD--DAAYRANALAKSAL-GIEPGAEVIYQSLRYLLDSTYV 244
Query: 241 NGEVIRIDGALRM 253
G + ++G +
Sbjct: 245 TGTTLTVNGGRHV 257
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 168 bits (429), Expect = 1e-51
Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 32/268 (11%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAKEL----GPDVKFA 55
+ ++TG SG+G A + + G +VL + +V E+ V
Sbjct: 22 SMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHH 81
Query: 56 PVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVN 115
P D+T ++ + + D FG D+ VN AG+ KI ++ ++ + RI+ VN
Sbjct: 82 PADMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDF------PVEQWDRIIAVN 135
Query: 116 TVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLP 175
+F+ R + + + G IIN AS + AY A+K GI+G+T
Sbjct: 136 LSSSFHTIRGAIPPMKKKG------WGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKT 189
Query: 176 MARDLAGAGIRVNTIAPGLFDTPLLSML------------NEKVRNFLARSIPAPQRLGH 223
+A ++A +G+ VN+I PG TPL+ + + + + P ++
Sbjct: 190 VALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVMLKGQPT-KKFIT 248
Query: 224 PDEFAQLVQSIITNP--LINGEVIRIDG 249
++ A L + + I G + +DG
Sbjct: 249 VEQVASLALYLAGDDAAQITGTHVSMDG 276
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 168 bits (429), Expect = 1e-51
Identities = 63/273 (23%), Positives = 108/273 (39%), Gaps = 27/273 (9%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAKEL----GPDVKFAP 56
++ +VTG A +G+A ++ + G RVV+ ++E S+A EL
Sbjct: 21 MEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQ 80
Query: 57 VDVTSEE----DVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNY----NKGTVHSLDDF 108
D+T+ ++ + C +FG+ DV VN A + N
Sbjct: 81 ADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQV 140
Query: 109 KRILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSG 168
++ N + F + AQ N I+N + Y+ K
Sbjct: 141 AELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQPCMAFSLYNMGKHA 200
Query: 169 IVGMTLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFA 228
+VG+T A +LA GIRVN +APG+ P + E+ ++ R +P +R ++ A
Sbjct: 201 LVGLTQSAALELAPYGIRVNGVAPGVSLLP--VAMGEEEKDKWRRKVPLGRREASAEQIA 258
Query: 229 QLVQ-------SIITNPLINGEVIRIDGALRMI 254
V IT G +I++DG L ++
Sbjct: 259 DAVIFLVSGSAQYIT-----GSIIKVDGGLSLV 286
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 167 bits (425), Expect = 2e-51
Identities = 70/263 (26%), Positives = 113/263 (42%), Gaps = 35/263 (13%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVD 58
L G LVTG A GLG A E + G RV+L D+ + L G D D
Sbjct: 7 LTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFD 66
Query: 59 VTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVG 118
VT E ++ A +D+ +N AGI + L+++++++ N
Sbjct: 67 VTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVE------LELENWQKVIDTNLTS 120
Query: 119 TFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMAR 178
F V+R +A+ ++ G IIN S+ + + Y+A+K GI +T MA
Sbjct: 121 AFLVSRSAAK-----RMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAA 175
Query: 179 DLAGAGIRVNTIAPGLFDTPLLSML--NEKVRNFLARSIPAPQRLGHPDEFAQLVQSIIT 236
+ A I+ N I PG T + + L +++ +++ S P+ QR G P+E
Sbjct: 176 EWAQFNIQTNAIGPGYILTDMNTALIEDKQFDSWVKSSTPS-QRWGRPEELI-------- 226
Query: 237 NPL----------INGEVIRIDG 249
ING++I +DG
Sbjct: 227 GTAIFLSSKASDYINGQIIYVDG 249
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 167 bits (424), Expect = 3e-51
Identities = 46/261 (17%), Positives = 103/261 (39%), Gaps = 27/261 (10%)
Query: 4 GVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG--ESVAKELGPDVKFAPVDVTS 61
G V LVTG + G+GK+ V+ + V+ + SE + + ++ G + D+T
Sbjct: 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITE 61
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
+ +++ V GK+D V AG+ + N ++ +K++ +N +
Sbjct: 62 DSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVN-----EIDVNAWKKLYDINFFSIVS 116
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
+ ++ + + G ++ +S A S AY +SK+ + + +A +
Sbjct: 117 LVGIALPELKKTN-------GNVVFVSSDACNMYFSSWGAYGSSKAALNHFAMTLANE-- 167
Query: 182 GAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQ--------RLGHPDEFAQLVQS 233
++ +APG+ DT + + E V + +L A +
Sbjct: 168 ERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKENNQLLDSSVPATVYAK 227
Query: 234 IITNPL---INGEVIRIDGAL 251
+ + + +NG+ + +
Sbjct: 228 LALHGIPDGVNGQYLSYNDPA 248
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 167 bits (425), Expect = 3e-51
Identities = 80/277 (28%), Positives = 121/277 (43%), Gaps = 47/277 (16%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL----------GP 50
L+ + LVTG SG+G+A R+ EG V CDL + + + L
Sbjct: 4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRG 63
Query: 51 DVKFAPVDVTSEEDVQKAVLLCKDSFGK-LDVNVNCAGISCAFKIFNYNKGTVHSL---- 105
+ DV+ + + + F + V V+CAGI T
Sbjct: 64 NHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGI------------TQDEFLLHM 111
Query: 106 --DDFKRILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYS 163
DD+ +++ VN GTF V + +AQ + N G IIN +SI G GQ Y+
Sbjct: 112 SEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCR-----GSIINISSIVGKVGNVGQTNYA 166
Query: 164 ASKSGIVGMTLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGH 223
ASK+G++G+T AR+L GIR N++ PG TP+ + +KV + + IP LG
Sbjct: 167 ASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVPQKVVDKITEMIPM-GHLGD 225
Query: 224 PDEFAQLVQ-------SIITNPLINGEVIRIDGALRM 253
P++ A +V IT G + + G L M
Sbjct: 226 PEDVADVVAFLASEDSGYIT-----GTSVEVTGGLFM 257
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 166 bits (424), Expect = 3e-51
Identities = 42/263 (15%), Positives = 91/263 (34%), Gaps = 33/263 (12%)
Query: 6 VGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDV 65
+VT G + R+ G V D + + + + + SE++
Sbjct: 3 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAE---TYPQLKPMSEQEP 59
Query: 66 QKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFNVARL 125
+ + ++G++DV V+ + F+ ++++D++ + + F +
Sbjct: 60 AELIEAVTSAYGQVDVLVSNDIFAPEFQPI-----DKYAVEDYRGAVEALQIRPFALVNA 114
Query: 126 SAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLAGAGI 185
A + + K G II S + Y+++++G + ++++L I
Sbjct: 115 VASQMKKRK------SGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNI 168
Query: 186 RVNTIAPGLFDTPLLSML--------NEKVRNFLARSIPAPQRLGHPDEFAQLV------ 231
V I P + N + + + QRLG E +LV
Sbjct: 169 PVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTAL-QRLGTQKELGELVAFLASG 227
Query: 232 QSIITNPLINGEVIRIDGALRMI 254
+ G+V + G MI
Sbjct: 228 SC----DYLTGQVFWLAGGFPMI 246
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 168 bits (427), Expect = 3e-51
Identities = 61/242 (25%), Positives = 96/242 (39%), Gaps = 23/242 (9%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVD 58
G +VTGGASG+G AT R G R+VL D+ E L G D D
Sbjct: 29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCD 88
Query: 59 VTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVG 118
V +++ + G +DV + AGI A + + DD++ ++ ++ G
Sbjct: 89 VRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQ------MNHDDWRWVIDIDLWG 142
Query: 119 TFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMAR 178
+ + + E G G I TAS A +G Y +K G+VG+ +AR
Sbjct: 143 SIHAVEAFLPRLLEQ-----GTGGHIAFTASFAGLVPNAGLGTYGVAKYGVVGLAETLAR 197
Query: 179 DLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGH---------PDEFAQ 229
++ GI V+ + P + +T L+S S G D+ A+
Sbjct: 198 EVKPNGIGVSVLCPMVVETKLVSNSERIRGADYGMSATPEGAFGPLPTQDESVSADDVAR 257
Query: 230 LV 231
L
Sbjct: 258 LT 259
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 167 bits (425), Expect = 3e-51
Identities = 63/281 (22%), Positives = 108/281 (38%), Gaps = 50/281 (17%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVA---------------- 45
L+G V +TG A G G+A R+ EG ++ D+ V
Sbjct: 9 LEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLV 68
Query: 46 KELGPDVKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSL 105
+ + A VD + ++K V + G+LD+ V AG++ +
Sbjct: 69 EAANRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVA------APQAWDDITP 122
Query: 106 DDFKRILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSAS 165
+DF+ ++ +N GT+N A ++ E G G II +S A + Q + Y+AS
Sbjct: 123 EDFRDVMDINVTGTWNTVMAGAP-----RIIEGGRGGSIILISSAAGMKMQPFMIHYTAS 177
Query: 166 KSGIVGMTLPMARDLAGAGIRVNTIAPGLFDTPLL----------SMLNEKVRNFLARSI 215
K + G+ A +L IRVN++ PG +TP+ +M + +
Sbjct: 178 KHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGDMVTAVGQAMETNPQLSHVLTPF 237
Query: 216 PAPQRLGHPDEFAQLVQ-------SIITNPLINGEVIRIDG 249
P + P++ A V +T I +D
Sbjct: 238 L-PDWVAEPEDIADTVCWLASDESRKVT-----AAQIPVDQ 272
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 167 bits (425), Expect = 4e-51
Identities = 69/280 (24%), Positives = 114/280 (40%), Gaps = 49/280 (17%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVA---------------- 45
L+G V +TG A G G++ R+ EG ++ CD+ SV
Sbjct: 13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLV 72
Query: 46 KELGPDVKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSL 105
++ G +DV + +++ V + FG+LDV V AG+ ++ + +
Sbjct: 73 EDQGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVL------SWGRVWELTD 126
Query: 106 DDFKRILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSAS 165
+ + ++ VN GT+ R A + + E G G I+ +S A + G YSAS
Sbjct: 127 EQWDTVIGVNLTGTWRTLR--ATVPA---MIEAGNGGSIVVVSSSAGLKATPGNGHYSAS 181
Query: 166 KSGIVGMTLPMARDLAGAGIRVNTIAPGLFDTPLLSMLN---------EKVRNFLARSIP 216
K G+ +T +A +L GIRVN+I P +TP++ V +F +
Sbjct: 182 KHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPEAMMEIFARHPSFVHSFPPMPVQ 241
Query: 217 APQRLGHPDEFAQLVQ-------SIITNPLINGEVIRIDG 249
P DE A +V +T G I +D
Sbjct: 242 -PNGFMTADEVADVVAWLAGDGSGTLT-----GTQIPVDK 275
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 166 bits (422), Expect = 5e-51
Identities = 54/263 (20%), Positives = 99/263 (37%), Gaps = 41/263 (15%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL----GPDVKFAP 56
+L + LVTG + G+G+ R G V+L + VA + G ++
Sbjct: 9 LLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFI 68
Query: 57 VD--VTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLV 114
+D + E+ Q+ ++ +LD ++ AG+ + + ++ ++ V
Sbjct: 69 LDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPM-----SEQNPQVWQDVMQV 123
Query: 115 NTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTL 174
N TF + + L+ ++ G ++ T+S +G++ AY+ASK GM
Sbjct: 124 NVNATFMLTQALLPLLLKSD------AGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQ 177
Query: 175 PMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPA--PQRLGHPDEFAQLV- 231
+A + +RVN I PG T + A + P PQ+L P + L
Sbjct: 178 VLADEYQ-QRLRVNCINPGGTRTAM-----------RASAFPTEDPQKLKTPADIMPLYL 225
Query: 232 -----QSIITNPLINGEVIRIDG 249
S G
Sbjct: 226 WLMGDDSR----RKTGMTFDAQP 244
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 166 bits (424), Expect = 5e-51
Identities = 68/264 (25%), Positives = 115/264 (43%), Gaps = 26/264 (9%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL--GPDVKFAPVDV 59
L G + LVTGG+ G+G+ + ++ G RV +C A L D + P D+
Sbjct: 27 LAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADL 86
Query: 60 TSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGT 119
+SE ++ + +LD+ VN AG S + + +++++ +N
Sbjct: 87 SSEAGARRLAQALGELSARLDILVNNAGTS------WGAALESYPVSGWEKVMQLNVTSV 140
Query: 120 FNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQV-AYSASKSGIVGMTLPMAR 178
F+ + L+ + E+ +IN S+A Q AY SK+ + ++ +A+
Sbjct: 141 FSCIQQLLPLLRRSASAEN--PARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLAK 198
Query: 179 DLAGAGIRVNTIAPGLFDTPLLSML--NEKVRNFLARSIPAPQRLGHPDEFAQLVQSIIT 236
+L G I VN IAPG F + + + + + + SIP R G P+E A L S
Sbjct: 199 ELVGEHINVNVIAPGRFPSRMTRHIANDPQALEADSASIPM-GRWGRPEEMAALAIS--- 254
Query: 237 NPL-------INGEVIRIDGALRM 253
L + G VI IDG +
Sbjct: 255 --LAGTAGAYMTGNVIPIDGGFHL 276
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 167 bits (424), Expect = 6e-51
Identities = 74/270 (27%), Positives = 101/270 (37%), Gaps = 42/270 (15%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL----GPDVKFAPV 57
L LVTGG G+G+ R G V + E SV EL +V +
Sbjct: 39 LSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRL 98
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSL------DDFKRI 111
DV+ A D+FG LDV AGI + + +
Sbjct: 99 DVSDPGSCADAARTVVDAFGALDVVCANAGI------------FPEARLDTMTPEQLSEV 146
Query: 112 LLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASI-AAYEGQSGQVAYSASKSGIV 170
L VN GT + + + RG +I T+SI G G Y ASK+ +
Sbjct: 147 LDVNVKGTVYTVQACLAPLTASG------RGRVILTSSITGPVTGYPGWSHYGASKAAQL 200
Query: 171 GMTLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQL 230
G A +LA G+ VN I PG T L + E+ + +ARSIP LG P + L
Sbjct: 201 GFMRTAAIELAPRGVTVNAILPGNILTEGLVDMGEEYISGMARSIPM-GMLGSPVDIGHL 259
Query: 231 VQ-------SIITNPLINGEVIRIDGALRM 253
IT G+ I +DG +
Sbjct: 260 AAFLATDEAGYIT-----GQAIVVDGGQVL 284
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 166 bits (422), Expect = 6e-51
Identities = 67/268 (25%), Positives = 107/268 (39%), Gaps = 32/268 (11%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-----ESVAKELGPDVKFA 55
MLKG V +VTG SG+G + +G +VL + +A + G V +
Sbjct: 1 MLKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYD 60
Query: 56 PVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVN 115
D++ E V+ V G++D+ VN AGI I ++ + + IL +N
Sbjct: 61 GADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDF------PTEKWDAILALN 114
Query: 116 TVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLP 175
F+ + + + G IIN AS + + AY A+K G+VG T
Sbjct: 115 LSAVFHGTAAALPHMKKQG------FGRIINIASAHGLVASANKSAYVAAKHGVVGFTKV 168
Query: 176 MARDLAGAGIRVNTIAPGLFDTPLLSML------------NEKVRNFLARSIPAPQRLGH 223
A + AG GI N I PG TPL+ R L+ P+ +
Sbjct: 169 TALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPS-LQFVT 227
Query: 224 PDEFAQLVQSIITNP--LINGEVIRIDG 249
P++ + ++ I G + +DG
Sbjct: 228 PEQLGGTAVFLASDAAAQITGTTVSVDG 255
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 165 bits (421), Expect = 7e-51
Identities = 80/266 (30%), Positives = 133/266 (50%), Gaps = 37/266 (13%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
L+G V LVTG + G+GKA E + G +V+ S ++++ LG + K ++VT+
Sbjct: 7 LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTN 66
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSL------DDFKRILLVN 115
E ++ + D FG +D+ VN AGI T +L +++ I+ N
Sbjct: 67 PESIEAVLKAITDEFGGVDILVNNAGI------------TRDNLLMRMKEEEWSDIMETN 114
Query: 116 TVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLP 175
F +++ + + + + +G IIN S+ G +GQ Y+A+K+G++G T
Sbjct: 115 LTSIFRLSKAVLRGMMKKR------QGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKS 168
Query: 176 MARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ--- 232
MAR++A G+ VNT+APG +T + LN++ R +PA RLG P E A V
Sbjct: 169 MAREVASRGVTVNTVAPGFIETDMTKALNDEQRTATLAQVPA-GRLGDPREIASAVAFLA 227
Query: 233 ----SIITNPLINGEVIRIDGALRMI 254
+ IT GE + ++G + MI
Sbjct: 228 SPEAAYIT-----GETLHVNGGMYMI 248
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 165 bits (420), Expect = 9e-51
Identities = 51/257 (19%), Positives = 103/257 (40%), Gaps = 31/257 (12%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL------GPDVKFA 55
+ + ++TG + G+G + +G RVVL E V E+ +
Sbjct: 5 KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVL 64
Query: 56 PVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVN 115
P+D+T + +G +D+ VN A + + +D+F++I+ +N
Sbjct: 65 PLDITDCTKADTEIKDIHQKYGAVDILVNAAAM-------FMDGSLSEPVDNFRKIMEIN 117
Query: 116 TVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLP 175
+ + + + +++ K G I N AS AA G + Y ++K ++G+
Sbjct: 118 VIAQYGILKTVTEIMKVQK------NGYIFNVASRAAKYGFADGGIYGSTKFALLGLAES 171
Query: 176 MARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSII 235
+ R+LA GIRV T+ PG +T + ++ + + PD+ ++ ++
Sbjct: 172 LYRELAPLGIRVTTLCPGWVNTDMAKKAGTPFKD---------EEMIQPDDLLNTIRCLL 222
Query: 236 TNP---LINGEVIRIDG 249
I V +
Sbjct: 223 NLSENVCIKDIVFEMKK 239
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 165 bits (421), Expect = 1e-50
Identities = 62/266 (23%), Positives = 113/266 (42%), Gaps = 29/266 (10%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG----ESVAKELGPDVKFAPV 57
L+T G GLGK E+++ +G V + + + K++ ++F
Sbjct: 5 RFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQA 64
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTV 117
DVT +ED+ K V FGK+D +N AG +F K + D++ ++ N
Sbjct: 65 DVTKKEDLHKIVEEAMSHFGKIDFLINNAGPY----VFERKKLVDYEEDEWNEMIQGNLT 120
Query: 118 GTFNVARLSAQLIHENKLNEDGLRGVIINTA--SIAAYEGQSGQVAYSASKSGIVGMTLP 175
F++ +L ++ + G IIN + G + A++A+K G+V +T
Sbjct: 121 AVFHLLKLVVPVMRKQN------FGRIINYGFQGADSAPGWIYRSAFAAAKVGLVSLTKT 174
Query: 176 MARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ--- 232
+A + A GI N + PG + ++ R + P R G ++ A+ +
Sbjct: 175 VAYEEAEYGITANMVCPGDIIGEMKEATIQEARQLKEHNTPI-GRSGTGEDIARTISFLC 233
Query: 233 ----SIITNPLINGEVIRIDGALRMI 254
+IT G +I + GA+ +I
Sbjct: 234 EDDSDMIT-----GTIIEVTGAVDVI 254
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 165 bits (420), Expect = 1e-50
Identities = 66/267 (24%), Positives = 107/267 (40%), Gaps = 37/267 (13%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDL-PTSEGESVAKELGPDVKFAPVDVT 60
LKG LVTG SG+G + + R G +VL + + G P D++
Sbjct: 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPAPALAEIARHGVKAVHHPADLS 61
Query: 61 SEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTF 120
++ L + FG +D+ VN AGI + + L+ + +I+ +N F
Sbjct: 62 DVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQF------PLESWDKIIALNLSAVF 115
Query: 121 NVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDL 180
+ RL+ + G IIN AS+ G +G+ AY A+K G+VG+T + +
Sbjct: 116 HGTRLALPGMRARN------WGRIINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVGLET 169
Query: 181 AGAGIRVNTIAPGLFDTPLLSML-----------NEKVRNFLARSIPAPQRLGHPDEFAQ 229
A + + N I PG TPL+ + + LA P+ P+ +
Sbjct: 170 ATSNVTCNAICPGWVLTPLVQKQIDDRAANGGDPLQAQHDLLAEKQPS-LAFVTPEHLGE 228
Query: 230 LVQ-------SIITNPLINGEVIRIDG 249
LV S + G +DG
Sbjct: 229 LVLFLCSEAGSQVR-----GAAWNVDG 250
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 165 bits (420), Expect = 1e-50
Identities = 69/266 (25%), Positives = 114/266 (42%), Gaps = 37/266 (13%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
L G LVTG G+G+A +G V L + + +A +LG DV +++
Sbjct: 25 LTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSD 84
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSL------DDFKRILLVN 115
+ +++ + + +D+ VN AGI T L D+ +L VN
Sbjct: 85 RKSIKQLAEVAEREMEGIDILVNNAGI------------TRDGLFVRMQDQDWDDVLAVN 132
Query: 116 TVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLP 175
+ R + + G IIN SI G GQ Y A+K+G++G +
Sbjct: 133 LTAASTLTRELIHSMMRRR------YGRIINITSIVGVVGNPGQTNYCAAKAGLIGFSKA 186
Query: 176 MARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ--- 232
+A+++A I VN IAPG + + LNEK + + IP +R+G +E A
Sbjct: 187 LAQEIASRNITVNCIAPGFIKSAMTDKLNEKQKEAIMAMIPM-KRMGIGEEIAFATVYLA 245
Query: 233 ----SIITNPLINGEVIRIDGALRMI 254
+ +T G+ + I+G + MI
Sbjct: 246 SDEAAYLT-----GQTLHINGGMAMI 266
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 165 bits (419), Expect = 2e-50
Identities = 62/249 (24%), Positives = 104/249 (41%), Gaps = 25/249 (10%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVD 58
L G V +VTG + G+G A ++ G RVVL + +V +E+ G + + D
Sbjct: 27 LSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACD 86
Query: 59 VTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVG 118
++ + + + G+ DV VN AG+ + K ++ ++ VN
Sbjct: 87 LSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMK-----PAEWDALIAVNLKA 141
Query: 119 TFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMAR 178
+ + R A + K RG IIN +S+A + AY+ASK G+ G+ A
Sbjct: 142 PYLLLRAFAPAMIAAK------RGHIINISSLAGKNPVADGAAYTASKWGLNGLMTSAAE 195
Query: 179 DLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSIITNP 238
+L +RV+ +APG T L+ K + PD+ A +V + T
Sbjct: 196 ELRQHQVRVSLVAPGSVRTEFGVGLSAKK---------SALGAIEPDDIADVVALLATQA 246
Query: 239 --LINGEVI 245
EV+
Sbjct: 247 DQSFISEVL 255
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 164 bits (417), Expect = 3e-50
Identities = 75/270 (27%), Positives = 121/270 (44%), Gaps = 41/270 (15%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG----ESVAKELGPDVKFAP 56
++ + VTGG G+G + +R+ ++G RVV P S K LG D +
Sbjct: 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASE 69
Query: 57 VDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSL------DDFKR 110
+V + ++A K G++DV VN AGI T + +D++
Sbjct: 70 GNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGI------------TRDVVFRKMTREDWQA 117
Query: 111 ILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIV 170
++ N FNV + + E G IIN +S+ +GQ GQ YS +K+GI
Sbjct: 118 VIDTNLTSLFNVTKQVIDGMVERG------WGRIINISSVNGQKGQFGQTNYSTAKAGIH 171
Query: 171 GMTLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQL 230
G T+ +A+++A G+ VNT++PG T ++ + V + +IP +RLG PDE +
Sbjct: 172 GFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIRPDVLEKIVATIPV-RRLGSPDEIGSI 230
Query: 231 VQ-------SIITNPLINGEVIRIDGALRM 253
V T G ++G L M
Sbjct: 231 VAWLASEESGFST-----GADFSLNGGLHM 255
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 164 bits (418), Expect = 3e-50
Identities = 77/265 (29%), Positives = 123/265 (46%), Gaps = 38/265 (14%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL----GPDVKFAPV 57
L+G V LVTGG+ GLG + + G VV+ E A++L G +
Sbjct: 19 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRC 78
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTV 117
DV++ E+V+K + K+ FGKLD VN AGI+ LD+F++++ VN
Sbjct: 79 DVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEE------FPLDEFRQVIEVNLF 132
Query: 118 GTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYE-GQSGQVAYSASKSGIVGMTLPM 176
GT+ V R + L+ E+ IIN S+ E AY+ASK G+ +T +
Sbjct: 133 GTYYVCREAFSLLRESD------NPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKAL 186
Query: 177 ARDLAGAGIRVNTIAPGLFDTPLLSML--NEKVRNFLARSIPAPQRLGHPDEFAQLVQSI 234
A++ GIRVN IAPG + T + + + + +++ + IP R G P++
Sbjct: 187 AKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPL-GRTGVPEDLK------ 239
Query: 235 ITNPL----------INGEVIRIDG 249
+ G++I +DG
Sbjct: 240 --GVAVFLASEEAKYVTGQIIFVDG 262
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 164 bits (417), Expect = 4e-50
Identities = 72/278 (25%), Positives = 111/278 (39%), Gaps = 47/278 (16%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVD 58
V LVTG SG+G R+ +EG RV +C + KEL G + D
Sbjct: 20 QDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCD 79
Query: 59 VTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH---SLDDFKRILLVN 115
V S +++ V + +G +DV VN AG G + + + ++ N
Sbjct: 80 VRSVPEIEALVAAVVERYGPVDVLVNNAGRP---------GGGATAELADELWLDVVETN 130
Query: 116 TVGTFNVAR--LSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMT 173
G F V + L A + E G I+N AS +G YSASK G+VG T
Sbjct: 131 LTGVFRVTKQVLKAGGMLERG------TGRIVNIASTGGKQGVVHAAPYSASKHGVVGFT 184
Query: 174 LPMARDLAGAGIRVNTIAPGLFDTP-----------LLSMLNEKVRNFLARSIPAPQRLG 222
+ +LA GI VN + PG +TP + + E+ + + +P R
Sbjct: 185 KALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPI-GRYV 243
Query: 223 HPDEFAQLVQ-------SIITNPLINGEVIRIDGALRM 253
P E A++V + +T + + + G L
Sbjct: 244 QPSEVAEMVAYLIGPGAAAVT-----AQALNVCGGLGN 276
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 163 bits (415), Expect = 5e-50
Identities = 72/270 (26%), Positives = 119/270 (44%), Gaps = 41/270 (15%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAKEL---GPDVKFAP 56
M LVTG + G+G++ ++ EG V + + E E+V +E+ G D
Sbjct: 1 MKMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQ 60
Query: 57 VDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSL------DDFKR 110
+V ++V+ + FG LDV VN AGI T +L ++
Sbjct: 61 ANVADADEVKAMIKEVVSQFGSLDVLVNNAGI------------TRDNLLMRMKEQEWDD 108
Query: 111 ILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIV 170
++ N G FN + + + + G IIN +S+ G GQ Y A+K+G++
Sbjct: 109 VIDTNLKGVFNCIQKATPQMLRQR------SGAIINLSSVVGAVGNPGQANYVATKAGVI 162
Query: 171 GMTLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQL 230
G+T AR+LA GI VN +APG + + L+++++ + IP R G + A
Sbjct: 163 GLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPL-ARFGQDTDIANT 221
Query: 231 VQ-------SIITNPLINGEVIRIDGALRM 253
V IT G+ I ++G + M
Sbjct: 222 VAFLASDKAKYIT-----GQTIHVNGGMYM 246
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 163 bits (414), Expect = 7e-50
Identities = 77/270 (28%), Positives = 124/270 (45%), Gaps = 41/270 (15%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAKEL---GPDVKFAP 56
MLKG V LVTG + G+G+A + ++G VV+ + V E+ G D
Sbjct: 1 MLKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVR 60
Query: 57 VDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSL------DDFKR 110
DV + EDV V D FG++D+ VN AG+ T +L +++
Sbjct: 61 ADVANAEDVTNMVKQTVDVFGQVDILVNNAGV------------TKDNLLMRMKEEEWDT 108
Query: 111 ILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIV 170
++ N G F + ++ + + G I+N AS+ G GQ Y A+K+G++
Sbjct: 109 VINTNLKGVFLCTKAVSRFMMRQR------HGRIVNIASVVGVTGNPGQANYVAAKAGVI 162
Query: 171 GMTLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQL 230
G+T A++LA I VN IAPG T + +L+E ++ + + IPA + G + A
Sbjct: 163 GLTKTSAKELASRNITVNAIAPGFIATDMTDVLDENIKAEMLKLIPA-AQFGEAQDIANA 221
Query: 231 VQ-------SIITNPLINGEVIRIDGALRM 253
V IT G+ + +DG + M
Sbjct: 222 VTFFASDQSKYIT-----GQTLNVDGGMVM 246
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 163 bits (415), Expect = 9e-50
Identities = 53/272 (19%), Positives = 95/272 (34%), Gaps = 27/272 (9%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAKEL----GPDVKFAP 56
+ ++TGGA +G + R+ ++G RVV+ + + + EL
Sbjct: 9 SECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCK 68
Query: 57 VDVTSEEDV----QKAVLLCKDSFGKLDVNVNCAGIS-----CAFKIFNYNKGTVHSLDD 107
D++ + + + +FG+ DV VN A N
Sbjct: 69 GDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQ 128
Query: 108 FKRILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKS 167
+ N V + R A+ E ++N G Y+ +K
Sbjct: 129 VAELFGSNAVAPLFLIRAFARRQGEGGAWRSR-NLSVVNLCDAMTDLPLPGFCVYTMAKH 187
Query: 168 GIVGMTLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEF 227
+ G+T A +LA IRVN +APGL P + ++ + R +P Q +
Sbjct: 188 ALGGLTRAAALELAPRHIRVNAVAPGLSLLP--PAMPQETQEEYRRKVPLGQSEASAAQI 245
Query: 228 AQLV------QSIITNPLINGEVIRIDGALRM 253
A + + I G +++DG L +
Sbjct: 246 ADAIAFLVSKDA----GYITGTTLKVDGGLIL 273
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 163 bits (414), Expect = 1e-49
Identities = 59/257 (22%), Positives = 102/257 (39%), Gaps = 25/257 (9%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVL---CDLPTSEGESVAKEL---GPDVKFA 55
LK V ++ GG LG T + E +VL + + EL G V
Sbjct: 9 LKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALY 68
Query: 56 PVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILL 113
D+++EE+V K + FGK+D+ +N G K + S +F +
Sbjct: 69 QSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGK--------VLKKPIVETSEAEFDAMDT 120
Query: 114 VNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMT 173
+N + + +A+ ++ N G II A+ Y+ +K+ + T
Sbjct: 121 INNKVAYFFIKQAAKHMNPN--------GHIITIATSLLAAYTGFYSTYAGNKAPVEHYT 172
Query: 174 LPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQS 233
+++L I VN IAPG DT K +S +L ++ A +++
Sbjct: 173 RAASKELMKQQISVNAIAPGPMDTSFFYGQETKESTAFHKSQAMGNQLTKIEDIAPIIKF 232
Query: 234 IITNPL-INGEVIRIDG 249
+ T+ ING+ I +G
Sbjct: 233 LTTDGWWINGQTIFANG 249
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 163 bits (415), Expect = 1e-49
Identities = 63/290 (21%), Positives = 104/290 (35%), Gaps = 59/290 (20%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVA---------------- 45
++G V VTG A G G++ R+ +EG ++ D+ V
Sbjct: 9 VEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETA 68
Query: 46 ---KELGPDVKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTV 102
K + A VDV + ++ AV + G+LD+ V AGI T+
Sbjct: 69 DLVKGHNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNG-------GDTL 121
Query: 103 H--SLDDFKRILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQV 160
S +D+ ++ +N G + + A + H + G G II T+S+ +
Sbjct: 122 DKTSEEDWTEMIDINLAGVWKTVK--AGVPH---MIAGGRGGSIILTSSVGGLKAYPHTG 176
Query: 161 AYSASKSGIVGMTLPMARDLAGAGIRVNTIAPGLFDTPLLSMLN--------------EK 206
Y A+K G+VG+ +L IRVN++ P TP+L +
Sbjct: 177 HYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKMFRPDLENPGPDD 236
Query: 207 VRNFLARSIPAPQRLGHPDEFAQLV-------QSIITNPLINGEVIRIDG 249
+ P P + + V IT G + ID
Sbjct: 237 MAPICQMFHTLPIPWVEPIDISNAVLFFASDEARYIT-----GVTLPIDA 281
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 161 bits (410), Expect = 2e-49
Identities = 89/269 (33%), Positives = 134/269 (49%), Gaps = 41/269 (15%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAKEL---GPDVKFAPV 57
LKG +VTG + GLGKA ++ G +VL P S ++ A+E G +V A
Sbjct: 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKG 62
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSL------DDFKRI 111
DV + EDV+ V D+FG++D+ VN AGI T +L D+ +
Sbjct: 63 DVKNPEDVENMVKTAMDAFGRIDILVNNAGI------------TRDTLMLKMSEKDWDDV 110
Query: 112 LLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVG 171
L N + + ++++ + K G IIN SIA G +GQ Y+ASK+G++G
Sbjct: 111 LNTNLKSAYLCTKAVSKIMLKQK------SGKIINITSIAGIIGNAGQANYAASKAGLIG 164
Query: 172 MTLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLV 231
T +A++ A GI N +APG+ T + +L +KV+ +IP +R G P+E A +V
Sbjct: 165 FTKSIAKEFAAKGIYCNAVAPGIIKTDMTDVLPDKVKEMYLNNIPL-KRFGTPEEVANVV 223
Query: 232 Q-------SIITNPLINGEVIRIDGALRM 253
+ IT G+VI IDG L M
Sbjct: 224 GFLASDDSNYIT-----GQVINIDGGLVM 247
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 162 bits (413), Expect = 3e-49
Identities = 63/265 (23%), Positives = 106/265 (40%), Gaps = 34/265 (12%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVD 58
LKG + LVTG + G+G A + G +V D+ + G + D
Sbjct: 32 LKGKIALVTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYKAAGINAHGYVCD 91
Query: 59 VTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVG 118
VT E+ +Q V + G +D+ VN AGI + F++++ ++
Sbjct: 92 VTDEDGIQAMVAQIESEVGIIDILVNNAGII------RRVPMIEMTAAQFRQVIDIDLNA 145
Query: 119 TFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMAR 178
F V++ + + G IIN S+ + G+ AY+A+K G+ +T +A
Sbjct: 146 PFIVSKAVIPSMIKKG------HGKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIAS 199
Query: 179 DLAGAGIRVNTIAPGLFDTPLLSMLNEKVR--------NFLARSIPAPQRLGHPDEFAQL 230
+ A I+ N I PG TP + L E + F+ PA R G ++
Sbjct: 200 EYGEANIQCNGIGPGYIATPQTAPLRELQKDGSRHPFDQFIIAKTPA-ARWGEAEDLMGP 258
Query: 231 V------QSIITNPLINGEVIRIDG 249
S +NG ++ +DG
Sbjct: 259 AVFLASDAS----NFVNGHILYVDG 279
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 161 bits (409), Expect = 4e-49
Identities = 69/266 (25%), Positives = 120/266 (45%), Gaps = 41/266 (15%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
L G L+TG +SG+G A + + G +V++ + +S+ L + ++ +
Sbjct: 12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLAN 71
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSL------DDFKRILLVN 115
+E+ + LD+ V AGI T +L DF +++ +N
Sbjct: 72 KEECSNLI----SKTSNLDILVCNAGI------------TSDTLAIRMKDQDFDKVIDIN 115
Query: 116 TVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLP 175
F + R + + + + + G IIN +SI G GQ Y ASK+G++GMT
Sbjct: 116 LKANFILNREAIKKMIQKR------YGRIINISSIVGIAGNPGQANYCASKAGLIGMTKS 169
Query: 176 MARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ--- 232
++ ++A GI VN +APG + + LNEK R + + IP G P++ A V
Sbjct: 170 LSYEVATRGITVNAVAPGFIKSDMTDKLNEKQREAIVQKIPL-GTYGIPEDVAYAVAFLA 228
Query: 233 ----SIITNPLINGEVIRIDGALRMI 254
S IT G+ + ++G + M+
Sbjct: 229 SNNASYIT-----GQTLHVNGGMLMV 249
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 161 bits (410), Expect = 4e-49
Identities = 61/265 (23%), Positives = 108/265 (40%), Gaps = 33/265 (12%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAKEL---GPDVKFAPV 57
+V G +G+A R +EG VVL +EG + E+ G
Sbjct: 6 FTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKA 65
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTV 117
D+T+ +V+ A+ D FG++ V+ AG + + ++L VN
Sbjct: 66 DLTNAAEVEAAISAAADKFGEIHGLVHVAGG-----LIARKTIAEMDEAFWHQVLDVNLT 120
Query: 118 GTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQS-GQVAYSASKSGIVGMTLPM 176
F A+ + + + G I+ +S A +G G +AY+ SK ++ T +
Sbjct: 121 SLFLTAKTALPKMAKG--------GAIVTFSSQAGRDGGGPGALAYATSKGAVMTFTRGL 172
Query: 177 ARDLAGAGIRVNTIAPGLFDTPLLSMLNE-KVRNFLARSIPAPQRLGHPDEFAQLVQ--- 232
A+++ G IRVN + PG+ T + +VR +A + +R G ++ A LV
Sbjct: 173 AKEV-GPKIRVNAVCPGMISTTFHDTFTKPEVRERVAGATSL-KREGSSEDVAGLVAFLA 230
Query: 233 ----SIITNPLINGEVIRIDGALRM 253
+ +T G I+G +
Sbjct: 231 SDDAAYVT-----GACYDINGGVLF 250
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 161 bits (409), Expect = 4e-49
Identities = 54/240 (22%), Positives = 93/240 (38%), Gaps = 31/240 (12%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL------GPDVKF 54
+LKG V LVTG A G+G A G VVL + V+ ++ P +
Sbjct: 11 LLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIA 70
Query: 55 APVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLV 114
++ + + ++ + FG+LD ++ A I +DF +++ V
Sbjct: 71 LNLENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPL-----EQLPDEDFMQVMHV 125
Query: 115 NTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTL 174
N TF + R L+ ++ I T+S +G++ AY SK G+
Sbjct: 126 NVNATFMLTRALLPLLKRSE------DASIAFTSSSVGRKGRANWGAYGVSKFATEGLMQ 179
Query: 175 PMARDLAGA-GIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPA--PQRLGHPDEFAQLV 231
+A +L G +R N+I PG T A++ P P P++ +
Sbjct: 180 TLADELEGVTAVRANSINPGATRTG-----------MRAQAYPDENPLNNPAPEDIMPVY 228
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 161 bits (411), Expect = 4e-49
Identities = 70/265 (26%), Positives = 118/265 (44%), Gaps = 40/265 (15%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPV 57
+ V LVTG G+G+ + + + V+ +SV E+ G +
Sbjct: 41 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAG 100
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSL------DDFKRI 111
DV+ +E++ + + +D+ VN AGI T +L D+++ +
Sbjct: 101 DVSKKEEISEVINKILTEHKNVDILVNNAGI------------TRDNLFLRMKNDEWEDV 148
Query: 112 LLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVG 171
L N F + + ++ + N+ G IIN +SI G GQ YS+SK+G++G
Sbjct: 149 LRTNLNSLFYITQPISKRMINNR------YGRIINISSIVGLTGNVGQANYSSSKAGVIG 202
Query: 172 MTLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLV 231
T +A++LA I VN IAPG + + ++E+++ + +IPA R+G P+E A L
Sbjct: 203 FTKSLAKELASRNITVNAIAPGFISSDMTDKISEQIKKNIISNIPA-GRMGTPEEVANLA 261
Query: 232 Q-------SIITNPLINGEVIRIDG 249
I G V IDG
Sbjct: 262 CFLSSDKSGYIN-----GRVFVIDG 281
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 161 bits (409), Expect = 7e-49
Identities = 73/269 (27%), Positives = 116/269 (43%), Gaps = 40/269 (14%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPV 57
L V +VTG + G+G+A + R G V+ + E + G + + A +
Sbjct: 25 TLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVL 84
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSL------DDFKRI 111
+V V V FG L+V VN AGI T L D++ +
Sbjct: 85 NVNDATAVDALVESTLKEFGALNVLVNNAGI------------TQDQLAMRMKDDEWDAV 132
Query: 112 LLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVG 171
+ N F ++R + + + + G I+N S+ G GQV Y+A+K+G+ G
Sbjct: 133 IDTNLKAVFRLSRAVLRPMMKAR------GGRIVNITSVVGSAGNPGQVNYAAAKAGVAG 186
Query: 172 MTLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLV 231
MT +AR++ GI VN +APG DT + L ++ + L IP RLG P++ A V
Sbjct: 187 MTRALAREIGSRGITVNCVAPGFIDTDMTKGLPQEQQTALKTQIPL-GRLGSPEDIAHAV 245
Query: 232 Q-------SIITNPLINGEVIRIDGALRM 253
IT G + ++G + M
Sbjct: 246 AFLASPQAGYIT-----GTTLHVNGGMFM 269
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 159 bits (406), Expect = 9e-49
Identities = 71/261 (27%), Positives = 126/261 (48%), Gaps = 32/261 (12%)
Query: 6 VGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAKEL---GPDVKFAPVDVTS 61
V +VTG + G+GKA + + G +V++ +++ E V+K++ G DV+
Sbjct: 3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK 62
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSL------DDFKRILLVN 115
E DV+ + D++G +DV VN AGI T +L + ++ +N
Sbjct: 63 EADVEAMMKTAIDAWGTIDVVVNNAGI------------TRDTLLIRMKKSQWDEVIDLN 110
Query: 116 TVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLP 175
G F + + +++ + + +G IIN AS+ G GQ Y+A+K+G++G +
Sbjct: 111 LTGVFLCTQAATKIMMKKR------KGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKT 164
Query: 176 MARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSII 235
AR+ A I VN + PG + + + L E + + +IP R G P+ A LV+ +
Sbjct: 165 AAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPL-GRTGQPENVAGLVEFLA 223
Query: 236 TNPL---INGEVIRIDGALRM 253
+P I G+ IDG + +
Sbjct: 224 LSPAASYITGQAFTIDGGIAI 244
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 160 bits (406), Expect = 1e-48
Identities = 51/252 (20%), Positives = 92/252 (36%), Gaps = 22/252 (8%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVD 58
+ V G +G ++ EG V + + E+ G + +D
Sbjct: 5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLD 64
Query: 59 VTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVG 118
+E++V + D+ L+V + G + F I + F+++ +
Sbjct: 65 ARNEDEVTAFLNAA-DAHAPLEVTIFNVGANVNFPILE------TTDRVFRKVWEMACWA 117
Query: 119 TFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMAR 178
F R SA+L+ + +G I T + A+ G SG A++++K G+ + MAR
Sbjct: 118 GFVSGRESARLMLAHG------QGKIFFTGATASLRGGSGFAAFASAKFGLRAVAQSMAR 171
Query: 179 DLAGAGIRV-NTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSIITN 237
+L I V + I DT + E++ A + P L P A +
Sbjct: 172 ELMPKNIHVAHLIIDSGVDTAWVRERREQMFGKDALAN--PDLLMPPAAVAGAYWQLYQQ 229
Query: 238 P---LINGEVIR 246
P IR
Sbjct: 230 PKSAWTFEMEIR 241
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 160 bits (406), Expect = 2e-48
Identities = 77/257 (29%), Positives = 121/257 (47%), Gaps = 24/257 (9%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAKEL---GPDVKFAP 56
M V +VTG + G+G A R+ +G VV+ + E VA ++ G A
Sbjct: 24 METNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQ 83
Query: 57 VDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNT 116
DV+ V++ +++FG +DV VN AGI F R++ VN
Sbjct: 84 ADVSDPAAVRRLFATAEEAFGGVDVLVNNAGI------MPLTTIAETGDAVFDRVIAVNL 137
Query: 117 VGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPM 176
GTFN R +AQ + G IIN ++ Y+A+K+G+ MT +
Sbjct: 138 KGTFNTLREAAQRLRVG--------GRIINMSTSQVGLLHPSYGIYAAAKAGVEAMTHVL 189
Query: 177 ARDLAGAGIRVNTIAPGLFDTPL-LSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSII 235
+++L G I VN +APG T L L +++VR+ A+ P +RLG P + A V + +
Sbjct: 190 SKELRGRDITVNAVAPGPTATDLFLEGKSDEVRDRFAKLAPL-ERLGTPQDIAGAV-AFL 247
Query: 236 TNPL---INGEVIRIDG 249
P +NG+V+R +G
Sbjct: 248 AGPDGAWVNGQVLRANG 264
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 160 bits (408), Expect = 2e-48
Identities = 60/284 (21%), Positives = 101/284 (35%), Gaps = 51/284 (17%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTS------------EGESVAKE-- 47
++G V +TG A G G++ + REG ++ D+ + ++
Sbjct: 26 VEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVE 85
Query: 48 -LGPDVKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLD 106
LG + + VDV + +Q AV G+LD+ + A ++ N
Sbjct: 86 ALGRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNR-----MDPK 140
Query: 107 DFKRILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASK 166
++ ++ VN G + AR++ + G I+ T+SI G Y ASK
Sbjct: 141 TWRDMIDVNLNGAWITARVAIP-----HIMAGKRGGSIVFTSSIGGLRGAENIGNYIASK 195
Query: 167 SGIVGMTLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPA--------- 217
G+ G+ MA +L IRVN + P TP+L P
Sbjct: 196 HGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQVASR 255
Query: 218 -----PQRLGHPDEFAQLVQ-------SIITNPLINGEVIRIDG 249
P P + + + IT G + +DG
Sbjct: 256 QMHVLPIPYVEPADISNAILFLVSDDARYIT-----GVSLPVDG 294
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 159 bits (405), Expect = 3e-48
Identities = 74/267 (27%), Positives = 113/267 (42%), Gaps = 34/267 (12%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG----ESVAKELGPDVKFAP 56
M V VTGG GLG A R+ G V + ++ ++ G D K
Sbjct: 22 MQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYA 81
Query: 57 VDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLV 114
VDV E ++ FGK+DV +N AGI+ T + D+ ++
Sbjct: 82 VDVADFESCERCAEKVLADFGKVDVLINNAGIT--------RDATFMKMTKGDWDAVMRT 133
Query: 115 NTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTL 174
+ FNV + + E + G I+N S+ G GQ Y+++K+GI G T
Sbjct: 134 DLDAMFNVTKQFIAGMVERR------FGRIVNIGSVNGSRGAFGQANYASAKAGIHGFTK 187
Query: 175 PMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRN-FLARSIPAPQRLGHPDEFAQLVQ- 232
+A + A GI VNT++PG T ++ + + V + IP RLG PDE A L+
Sbjct: 188 TLALETAKRGITVNTVSPGYLATAMVEAVPQDVLEAKILPQIPV-GRLGRPDEVAALIAF 246
Query: 233 ------SIITNPLINGEVIRIDGALRM 253
+T G + I+G + M
Sbjct: 247 LCSDDAGFVT-----GADLAINGGMHM 268
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 159 bits (404), Expect = 5e-48
Identities = 52/266 (19%), Positives = 91/266 (34%), Gaps = 37/266 (13%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-------ESVAKEL---GPD 51
L G +TG + G+G A R R+G V + S A + G
Sbjct: 4 LSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQ 63
Query: 52 VKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRI 111
D+ E+ V+ AV D+FG +D+ VN A + + F +
Sbjct: 64 GLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDT------PMKRFDLM 117
Query: 112 LLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQ--SGQVAYSASKSGI 169
VN G+F A+ + + I+ A + Y+ +K G+
Sbjct: 118 QQVNARGSFVCAQACLPHLLQAP------NPHILTLAPPPSLNPAWWGAHTGYTLAKMGM 171
Query: 170 VGMTLPMARDLAGAGIRVNTIAPGLF-DTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFA 228
+TL +A + G+ +N + P T ++ML P+ A
Sbjct: 172 SLVTLGLAAEFGPQGVAINALWPRTVIATDAINMLPG----------VDAAACRRPEIMA 221
Query: 229 QLVQSIITNP--LINGEVIRIDGALR 252
+++T +G+ + D L
Sbjct: 222 DAAHAVLTREAAGFHGQFLIDDEVLA 247
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 160 bits (406), Expect = 7e-48
Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 13/240 (5%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL-----GPDVKFAP 56
G VTGGA+G+G V +++ +G +V + D+ + L GP+V
Sbjct: 6 FAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQ 65
Query: 57 VDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNT 116
+DV S E + A + FG + + N AG++ I S DD+ +L VN
Sbjct: 66 LDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEE------SSYDDWDWLLGVNL 119
Query: 117 VGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPM 176
G N + E + G ++NTAS+AA+ Y+ +K + G++ +
Sbjct: 120 HGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAVRGLSESL 179
Query: 177 ARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSIIT 236
L I V+ + PGL + + + ++ +R + P + A + + +
Sbjct: 180 HYSLLKYEIGVSVLCPGLVKSYIYA--SDDIRPDALKGEVKPVDKTAVERLAGVHEFGME 237
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 157 bits (400), Expect = 9e-48
Identities = 62/268 (23%), Positives = 115/268 (42%), Gaps = 40/268 (14%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVD 58
L V LVTG + G+G + +G VV + E + G + ++
Sbjct: 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLN 62
Query: 59 VTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSL------DDFKRIL 112
++ E +Q K +D+ VN AGI T +L D+++ ++
Sbjct: 63 ISDIESIQNFFAEIKAENLAIDILVNNAGI------------TRDNLMMRMSEDEWQSVI 110
Query: 113 LVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGM 172
N F +++ + + + + G II+ S+ G GQ Y A+K+G++G
Sbjct: 111 NTNLSSIFRMSKECVRGMMKKR------WGRIISIGSVVGSAGNPGQTNYCAAKAGVIGF 164
Query: 173 TLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ 232
+ +A ++A I VN +APG T + L ++ ++F+A IP+ ++G P + A V
Sbjct: 165 SKSLAYEVASRNITVNVVAPGFIATDMTDKLTDEQKSFIATKIPS-GQIGEPKDIAAAVA 223
Query: 233 -------SIITNPLINGEVIRIDGALRM 253
IT G+ + ++G + M
Sbjct: 224 FLASEEAKYIT-----GQTLHVNGGMYM 246
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 157 bits (398), Expect = 1e-47
Identities = 38/254 (14%), Positives = 79/254 (31%), Gaps = 32/254 (12%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
+ +V GG LG A +E + G V+ DL ++ + + + T
Sbjct: 1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNK-----NWTE 55
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
+E ++D AG + + + ++ + +
Sbjct: 56 QEQSILEQTASSLQGSQVDGVFCVAGGWAGGSAS-----SKDFVKNADLMIKQSVWSSAI 110
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
A+L+ + G++ T + AA + Y +K+ + +T +A +
Sbjct: 111 AAKLATTHLKPG--------GLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDS 162
Query: 182 GA--GIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSIITNP- 238
G V TI P DTP+ N ++ + T
Sbjct: 163 GLPDNSAVLTIMPVTLDTPM---------NRKWMPNADHSSWTPLSFISEHLLKWTTETS 213
Query: 239 --LINGEVIRIDGA 250
+G +++I
Sbjct: 214 SRPSSGALLKITTE 227
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 156 bits (397), Expect = 2e-47
Identities = 64/255 (25%), Positives = 117/255 (45%), Gaps = 35/255 (13%)
Query: 6 VGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDV 65
LVTGG+ G+G+A E +V G RV + E A+ LG P D+ ++D
Sbjct: 4 KALVTGGSRGIGRAIAEALVARGYRVAIAS---RNPEEAAQSLG--AVPLPTDL-EKDDP 57
Query: 66 QKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTV-HSLDDFKRILLVNTVGTFNVAR 124
+ V ++ G L V V+ A + N K + S ++++R+L ++ F +A+
Sbjct: 58 KGLVKRALEALGGLHVLVHAAAV-------NVRKPALELSYEEWRRVLYLHLDVAFLLAQ 110
Query: 125 LSAQLIHENKLNEDGLRGVIINTASIAAYE--GQSGQVAYSASKSGIVGMTLPMARDLAG 182
+A + E G ++ S+ + G AY+ +K+ ++G+T +A++ A
Sbjct: 111 AAAPHMAEAG------WGRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKEWAR 164
Query: 183 AGIRVNTIAPGLFDTPLLSML--NEKVRNFLARSIPAPQRLGHPDEFAQLV------QSI 234
GIRVN + PG +T L N ++ + IP R P+E A++ ++
Sbjct: 165 LGIRVNLLCPGYVETEFTLPLRQNPELYEPITARIPM-GRWARPEEIARVAAVLCGDEA- 222
Query: 235 ITNPLINGEVIRIDG 249
+ G+ + +DG
Sbjct: 223 ---EYLTGQAVAVDG 234
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 156 bits (397), Expect = 2e-47
Identities = 74/266 (27%), Positives = 116/266 (43%), Gaps = 42/266 (15%)
Query: 6 VGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAKEL----GPDVKFAPVDVT 60
L+TG + G+G+A R+ +G + + E E VA+E P V ++
Sbjct: 3 KALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLL 62
Query: 61 SEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSL------DDFKRILLV 114
E V + G LD VN AGI T +L +D++ +L
Sbjct: 63 EAEAATALVHQAAEVLGGLDTLVNNAGI------------TRDTLLVRMKDEDWEAVLEA 110
Query: 115 NTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTL 174
N F R + +L+ + + G I+N S+ G GQ Y ASK+G++G T
Sbjct: 111 NLSAVFRTTREAVKLMMKAR------FGRIVNITSVVGILGNPGQANYVASKAGLIGFTR 164
Query: 175 PMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ-- 232
+A++ A GI VN +APG +T + L ++V+ + IPA R G P+E A+ V
Sbjct: 165 AVAKEYAQRGITVNAVAPGFIETEMTERLPQEVKEAYLKQIPA-GRFGRPEEVAEAVAFL 223
Query: 233 -----SIITNPLINGEVIRIDGALRM 253
IT G+ + +DG L
Sbjct: 224 VSEKAGYIT-----GQTLCVDGGLTP 244
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 156 bits (398), Expect = 4e-47
Identities = 63/262 (24%), Positives = 104/262 (39%), Gaps = 36/262 (13%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVA--KELGPDVKFAPVDV 59
L G +VTG SG+G+A R G V+ E + G + D+
Sbjct: 29 LAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADGGGSAEAVVADL 88
Query: 60 TSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGT 119
E ++DV VN AGI SL ++ +L VN
Sbjct: 89 ADLEGAANVAEELAA-TRRVDVLVNNAGII------ARAPAEEVSLGRWREVLTVNLDAA 141
Query: 120 FNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARD 179
+ ++R + + G I+ AS+ +++G AY+ASK +VG+T +A +
Sbjct: 142 WVLSRSFGTAMLAHG------SGRIVTIASMLSFQGGRNVAAYAASKHAVVGLTRALASE 195
Query: 180 LAGAGIRVNTIAPGLFDTPLLSML--NEKVRNFLARSIPAPQRLGHPDEFAQLVQSIITN 237
AG G+ VN +APG T + L +++ + IPA R P++
Sbjct: 196 WAGRGVGVNALAPGYVVTANTAALRADDERAAEITARIPA-GRWATPEDMV--------G 246
Query: 238 PL----------INGEVIRIDG 249
P ++G+V+ +DG
Sbjct: 247 PAVFLASDAASYVHGQVLAVDG 268
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 155 bits (395), Expect = 4e-47
Identities = 49/257 (19%), Positives = 94/257 (36%), Gaps = 35/257 (13%)
Query: 6 VGLVTGGASGLGKATVERIVREG-------GRVVLCDLPTSEGESVAKEL---GPDVKFA 55
+ L+TG G+G+A R +VL ++ E ++ E G
Sbjct: 4 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTI 63
Query: 56 PVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVN 115
D++ DV++ + +G +D VN AG+ + + + +DF + N
Sbjct: 64 TADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDL------TEEDFDYTMNTN 117
Query: 116 TVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLP 175
GTF + + L+ G I S+AA + Y SK G G+
Sbjct: 118 LKGTFFLTQALFALMERQH------SGHIFFITSVAATKAFRHSSIYCMSKFGQRGLVET 171
Query: 176 MARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSII 235
M +R+ + PG TP+ ++++++ + P++ A V
Sbjct: 172 MRLYARKCNVRITDVQPGAVYTPMWGKVDDEMQ----------ALMMMPEDIAAPVVQAY 221
Query: 236 TNP---LINGEVIRIDG 249
P ++ ++R
Sbjct: 222 LQPSRTVVEEIILRPTS 238
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 156 bits (396), Expect = 5e-47
Identities = 60/275 (21%), Positives = 105/275 (38%), Gaps = 42/275 (15%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL-----GPDVKFAP 56
++G + +VT G+SGLG A+ + R G R++L + E+ A + G V
Sbjct: 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVA 64
Query: 57 VDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNT 116
D+ D+ + +D G D+ V G + ++D+ +
Sbjct: 65 GDIREPGDIDRLFEKARD-LGGADILVYSTGGPRPGRFMEL------GVEDWDESYRLLA 117
Query: 117 VGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPM 176
V R +A+ + E G ++ S+ + + ++G+ +
Sbjct: 118 RSAVWVGRRAAEQMVEKG------WGRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTL 171
Query: 177 ARDLAGAGIRVNTIAPGLFDTPLLSMLN-----------EKVRNFLARSIPAPQRLGHPD 225
A +LA G+ VN + P L T + L E+ +A IP R+G P+
Sbjct: 172 ALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASRIPM-GRVGKPE 230
Query: 226 EFAQLVQ-------SIITNPLINGEVIRIDGALRM 253
E A +V S IT G VI +DG +
Sbjct: 231 ELASVVAFLASEKASFIT-----GAVIPVDGGAHI 260
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 155 bits (395), Expect = 5e-47
Identities = 60/261 (22%), Positives = 92/261 (35%), Gaps = 36/261 (13%)
Query: 6 VGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEED- 64
V +TG ASG+G A E + R G V+ D ++ E+ G +
Sbjct: 3 VIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGV 62
Query: 65 ----VQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSL--DDFKRILLVNTVG 118
V A + + L V VN G+ G +L ++V ++
Sbjct: 63 LDGLVCCAGVGVTAANSGLVVAVNYFGV------SALLDGLAEALSRGQQPAAVIVGSIA 116
Query: 119 TFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMAR 178
E + E L G +A +GQ +AY+ SK + +
Sbjct: 117 ATQPGA------AELPMVEAMLAGDEARAIELAEQQGQ-THLAYAGSKYAVTCLARRNVV 169
Query: 179 DLAGAGIRVNTIAPGLFDTPLLSMLN---EKVRNFLARSIPAPQRLGHPDEFAQLVQ--- 232
D AG G+R+N +APG +TPLL + P R P E A+ +
Sbjct: 170 DWAGRGVRLNVVAPGAVETPLLQASKADPRYGESTRRFVAPL-GRGSEPREVAEAIAFLL 228
Query: 233 ----SIITNPLINGEVIRIDG 249
S I G V+ +DG
Sbjct: 229 GPQASFIH-----GSVLFVDG 244
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 155 bits (395), Expect = 9e-47
Identities = 82/266 (30%), Positives = 129/266 (48%), Gaps = 35/266 (13%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAKEL---GPDVKFAP 56
L + LVTG + G+G+A + G +V + ++ + V + G +
Sbjct: 25 PLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVK 84
Query: 57 VDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSL------DDFKR 110
DV+ E +V+ + +G+LDV VN AGI T +L DD++
Sbjct: 85 ADVSQESEVEALFAAVIERWGRLDVLVNNAGI------------TRDTLLLRMKRDDWQS 132
Query: 111 ILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIV 170
+L +N G F +R +A+++ + + G IIN AS+ G GQ YSA+K+G++
Sbjct: 133 VLDLNLGGVFLCSRAAAKIMLKQR------SGRIINIASVVGEMGNPGQANYSAAKAGVI 186
Query: 171 GMTLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQL 230
G+T +A++LA GI VN +APG T + S L + L IP R G E A +
Sbjct: 187 GLTKTVAKELASRGITVNAVAPGFIATDMTSELAAEK---LLEVIPL-GRYGEAAEVAGV 242
Query: 231 VQSIITNPL---INGEVIRIDGALRM 253
V+ + +P I G+VI IDG L M
Sbjct: 243 VRFLAADPAAAYITGQVINIDGGLVM 268
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 154 bits (392), Expect = 9e-47
Identities = 36/234 (15%), Positives = 70/234 (29%), Gaps = 33/234 (14%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
+ LV GG LG V+ V D+ +E S + + T
Sbjct: 5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTD-----SFTE 59
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
+ D A + K+D + AG + + + + + +
Sbjct: 60 QADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKS-----LFKNCDLMWKQSIWTSTI 114
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
+ L+ + + E G++ + AA +G G + Y +K + + +A +
Sbjct: 115 SSHLATKHLKE--------GGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNS 166
Query: 182 GA--GIRVNTIAPGLFDTPLL--SMLNEKVRNFLARSIPAPQRLGHPDEFAQLV 231
G G + P DTP+ SM + +
Sbjct: 167 GMPSGAAAIAVLPVTLDTPMNRKSMPEADFS-----------SWTPLEFLVETF 209
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 156 bits (396), Expect = 1e-46
Identities = 63/295 (21%), Positives = 94/295 (31%), Gaps = 68/295 (23%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTS---------------EGESVAK 46
++ V LVTGGA G G++ ++ EG ++L D+ E +
Sbjct: 8 VQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVE 67
Query: 47 ELGPDVKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLD 106
+ G A VDV V + + FGKLDV V AGI G +
Sbjct: 68 KTGRKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGIC--------PLGAHLPVQ 119
Query: 107 DFKRILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQS--------- 157
F V+ VG N + + II T S+A +
Sbjct: 120 AFADAFDVDFVGVINTVHAALPYLTS--------GASIITTGSVAGLIAAAQPPGAGGPQ 171
Query: 158 --GQVAYSASKSGIVGMTLPMARDLAGAGIRVNTIAPGLFDTPLL-----------SMLN 204
G YS +K + TL +A LA IR N I P +T +L +
Sbjct: 172 GPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPMYRQFRPDLEA 231
Query: 205 EKVRNFLARSIPA---PQRLGHPDEFAQLVQ-------SIITNPLINGEVIRIDG 249
+ L P + + V +T G ++D
Sbjct: 232 PSRADALLAFPAMQAMPTPYVEASDISNAVCFLASDESRYVT-----GLQFKVDA 281
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 154 bits (393), Expect = 1e-46
Identities = 80/265 (30%), Positives = 131/265 (49%), Gaps = 41/265 (15%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL----GPDVKFAPV 57
L+G V LVTG G+G+A E++ G V++ ++VA+E+ G +
Sbjct: 5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEM 64
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSL------DDFKRI 111
++ SEE + KA + +D+ VN AGI T L D++ +
Sbjct: 65 NLLSEESINKAFEEIYNLVDGIDILVNNAGI------------TRDKLFLRMSLLDWEEV 112
Query: 112 LLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVG 171
L VN GTF V + S + + + + G I+N +S+ + G GQV YS +K+G++G
Sbjct: 113 LKVNLTGTFLVTQNSLRKMIKQR------WGRIVNISSVVGFTGNVGQVNYSTTKAGLIG 166
Query: 172 MTLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLV 231
T +A++LA + VN +APG +T + ++L+E+++ IP R G P+E A +V
Sbjct: 167 FTKSLAKELAPRNVLVNAVAPGFIETDMTAVLSEEIKQKYKEQIPL-GRFGSPEEVANVV 225
Query: 232 Q-------SIITNPLINGEVIRIDG 249
S IT GEVI ++G
Sbjct: 226 LFLCSELASYIT-----GEVIHVNG 245
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 156 bits (396), Expect = 1e-46
Identities = 72/263 (27%), Positives = 110/263 (41%), Gaps = 35/263 (13%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG--ESVAK---ELGPDVKFAP 56
LK LVTGG SG+G+A REG V + LP E + V E G P
Sbjct: 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLP 106
Query: 57 VDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNT 116
D++ E + V +++ G LD+ AG A + + F++ VN
Sbjct: 107 GDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEI-----KDLTSEQFQQTFAVNV 161
Query: 117 VGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPM 176
F + + + L+ + II T+SI AY+ + Y+A+K+ I+ + +
Sbjct: 162 FALFWITQEAIPLLPKG--------ASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGL 213
Query: 177 ARDLAGAGIRVNTIAPGLFDTPLL---SMLNEKVRNFLARSIPAPQRLGHPDEFAQLV-- 231
A+ +A GIRVN +APG T L +K+ F P +R G P E A +
Sbjct: 214 AKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQ-QTPM-KRAGQPAELAPVYVY 271
Query: 232 -----QSIITNPLINGEVIRIDG 249
S +T EV + G
Sbjct: 272 LASQESSYVT-----AEVHGVCG 289
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 155 bits (395), Expect = 1e-46
Identities = 54/263 (20%), Positives = 89/263 (33%), Gaps = 31/263 (11%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-------ESVAKE---LGPD 51
L+G ++GG+ G+G A +R+ +G V L + AKE G
Sbjct: 7 LRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQ 66
Query: 52 VKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRI 111
D+ + V AV + FG +D+ VN A I L F +
Sbjct: 67 ALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEV------PLKRFDLM 120
Query: 112 LLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQ-SGQVAYSASKSGIV 170
+ GT+ V++ + I+ + E + Y +K G+
Sbjct: 121 NGIQVRGTYAVSQSCIPHMKGRD------NPHILTLSPPIRLEPKWLRPTPYMMAKYGMT 174
Query: 171 GMTLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQL 230
L +A +L AGI NT+ P V+N L R P+ +A
Sbjct: 175 LCALGIAEELRDAGIASNTLWPRTTVAT------AAVQNLLGGDEAM-ARSRKPEVYADA 227
Query: 231 VQSIITNP-LINGEVIRIDGALR 252
++ P G + + L
Sbjct: 228 AYVVLNKPSSYTGNTLLCEDVLL 250
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 154 bits (392), Expect = 3e-46
Identities = 69/286 (24%), Positives = 107/286 (37%), Gaps = 61/286 (21%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTS------------EGESVAKE-- 47
L G V +TG A G G+A R+ +G ++ DL E + K
Sbjct: 11 LTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVE 70
Query: 48 -LGPDVKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLD 106
+G + DV E + A+ D G+LD+ V AGI D
Sbjct: 71 DIGSRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGI-APMSA---------GDD 120
Query: 107 DFKRILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQS----GQVAY 162
+ ++ VN G ++ +++ + + G G I+ +S A G G V Y
Sbjct: 121 GWHDVIDVNLTGVYHTIKVAIPTLVKQ-----GTGGSIVLISSSAGLAGVGSADPGSVGY 175
Query: 163 SASKSGIVGMTLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPA----- 217
A+K G+VG+ A LAG IRVN+I P +TP M+N + + A
Sbjct: 176 VAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETP---MINNEFTREWLAKMAAATDTP 232
Query: 218 -------PQRLGHPDEFAQLVQ-------SIITNPLINGEVIRIDG 249
P + P++ A V IT G + +D
Sbjct: 233 GAMGNAMPVEVLAPEDVANAVAWLVSDQARYIT-----GVTLPVDA 273
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 153 bits (390), Expect = 4e-46
Identities = 53/256 (20%), Positives = 98/256 (38%), Gaps = 19/256 (7%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKE---LGPDVKFAPVD 58
+ G V +VTG + G+G+ ++ + G V + VA+E LG D
Sbjct: 3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCD 62
Query: 59 VTSEEDVQKAV-LLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTV-HSLDDFKRILLVNT 116
+ E +V+ + ++ G+LDV VN A + NK + I V
Sbjct: 63 SSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGL 122
Query: 117 VGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPM 176
G + + A+L+ +G+I+ +S + V Y K+ +
Sbjct: 123 RGHYFCSVYGARLMVPAG------QGLIVVISSPGSL-QYMFNVPYGVGKAACDKLAADC 175
Query: 177 ARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRN----FLARSIPAPQRLGHPDEFAQLVQ 232
A +L G+ ++ PG+ T LL K L + A + + V
Sbjct: 176 AHELRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQFKSAFSSAETTELSGKCVV 235
Query: 233 SIITNPL---INGEVI 245
++ T+P ++G+V+
Sbjct: 236 ALATDPNILSLSGKVL 251
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 153 bits (390), Expect = 5e-46
Identities = 80/264 (30%), Positives = 120/264 (45%), Gaps = 31/264 (11%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAKEL---GPDVKFAP 56
M V LVTGG+ G+G A R+G RV + E ++V + G + P
Sbjct: 23 MSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIP 82
Query: 57 VDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLV 114
DV + D+ FG+LD VN AGI V S++ +R+L V
Sbjct: 83 GDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIV-------DYPQRVDEMSVERIERMLRV 135
Query: 115 NTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQ-VAYSASKSGIVGMT 173
N G+ A + + + G G I+N +S+AA G + Q V Y+ASK+ I T
Sbjct: 136 NVTGSILCAAEAVRRMSRLY---SGQGGAIVNVSSMAAILGSATQYVDYAASKAAIDTFT 192
Query: 174 LPMARDLAGAGIRVNTIAPGLFDTPL-LSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ 232
+ +AR++A GIRVN + PG+ +T L S +A S+P QR G P+E A +
Sbjct: 193 IGLAREVAAEGIRVNAVRPGIIETDLHASGGLPDRAREMAPSVPM-QRAGMPEEVADAIL 251
Query: 233 -------SIITNPLINGEVIRIDG 249
S +T G ++ + G
Sbjct: 252 YLLSPSASYVT-----GSILNVSG 270
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 154 bits (391), Expect = 1e-45
Identities = 55/284 (19%), Positives = 91/284 (32%), Gaps = 34/284 (11%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAKEL------------ 48
V LVTG A LG++ E + EG V L ++ +++ L
Sbjct: 44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQ 103
Query: 49 ---------GPDVKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIF---- 95
VT + V C +G+ DV VN A +
Sbjct: 104 ADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDE 163
Query: 96 ----NYNKGTVHSLDDFKRILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIA 151
+ N + + + + A + G IIN
Sbjct: 164 DGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAM 223
Query: 152 AYEGQSGQVAYSASKSGIVGMTLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFL 211
+ G Y+ +K + G+T A +LA IRVN + PGL + V
Sbjct: 224 TNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLV--DDMPPAVWEGH 281
Query: 212 ARSIPAPQRLGHPDEFAQLVQSIITN--PLINGEVIRIDGALRM 253
+P QR E + +V + ++ I G +++DG +
Sbjct: 282 RSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYSL 325
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 153 bits (389), Expect = 1e-45
Identities = 76/265 (28%), Positives = 117/265 (44%), Gaps = 33/265 (12%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAK---ELGPDVKFAPV 57
LKG L+TGG SG+G+A +EG + + L + + G P
Sbjct: 45 LKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPG 104
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTV 117
D++ E+ + V G L++ VN + + + ++ +N
Sbjct: 105 DLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGL-----EYITAEQLEKTFRINIF 159
Query: 118 GTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMA 177
F+V + A L H + VIINTASI AYEG + YSA+K IV T ++
Sbjct: 160 SYFHVTK--AALSHLKQ------GDVIINTASIVAYEGNETLIDYSATKGAIVAFTRSLS 211
Query: 178 RDLAGAGIRVNTIAPGLFDTPLL--SMLNEKVRNFLARSIPAPQRLGHPDEFAQLV---- 231
+ L GIRVN +APG TPL+ S +KV F + ++P QR G P E A
Sbjct: 212 QSLVQKGIRVNGVAPGPIWTPLIPSSFDEKKVSQFGS-NVPM-QRPGQPYELAPAYVYLA 269
Query: 232 ---QSIITNPLINGEVIRIDGALRM 253
S +T G++I ++G + +
Sbjct: 270 SSDSSYVT-----GQMIHVNGGVIV 289
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 151 bits (385), Expect = 1e-45
Identities = 73/265 (27%), Positives = 123/265 (46%), Gaps = 45/265 (16%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
LVTGG G+G A +R+ +G +V + G G VDVT
Sbjct: 13 FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTH--RGSGAP-KGLFG-----VEVDVTD 64
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSL------DDFKRILLVN 115
+ V +A ++ G ++V V+ AG+ + + + F++++ N
Sbjct: 65 SDAVDRAFTAVEEHQGPVEVLVSNAGL------------SADAFLMRMTEEKFEKVINAN 112
Query: 116 TVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLP 175
G F VA+ +++ + NK G +I S++ G Q Y+ASK+G++GM
Sbjct: 113 LTGAFRVAQRASRSMQRNK------FGRMIFIGSVSGLWGIGNQANYAASKAGVIGMARS 166
Query: 176 MARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ--- 232
+AR+L+ A + N +APG DT + L+E+++ + IPA +R+G P E A +V
Sbjct: 167 IARELSKANVTANVVAPGYIDTDMTRALDERIQQGALQFIPA-KRVGTPAEVAGVVSFLA 225
Query: 233 ----SIITNPLINGEVIRIDGALRM 253
S I+ G VI +DG + M
Sbjct: 226 SEDASYIS-----GAVIPVDGGMGM 245
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 152 bits (387), Expect = 2e-45
Identities = 55/284 (19%), Positives = 91/284 (32%), Gaps = 34/284 (11%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAKEL------------ 48
V LVTG A LG++ E + EG V L ++ +++ L
Sbjct: 7 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQ 66
Query: 49 ---------GPDVKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIF---- 95
VT + V C +G+ DV VN A +
Sbjct: 67 ADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDE 126
Query: 96 ----NYNKGTVHSLDDFKRILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIA 151
+ N + + + + A + G IIN
Sbjct: 127 DGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAM 186
Query: 152 AYEGQSGQVAYSASKSGIVGMTLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFL 211
+ G Y+ +K + G+T A +LA IRVN + PGL + V
Sbjct: 187 TNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLV--DDMPPAVWEGH 244
Query: 212 ARSIPAPQRLGHPDEFAQLVQSIITN--PLINGEVIRIDGALRM 253
+P QR E + +V + ++ I G +++DG +
Sbjct: 245 RSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYSL 288
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 150 bits (380), Expect = 8e-45
Identities = 57/282 (20%), Positives = 104/282 (36%), Gaps = 76/282 (26%)
Query: 6 VGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDV 65
+ +++G A+G+G AT + + G ++V D+ + E +A D+++ E
Sbjct: 3 IIVISGCATGIGAATRKVLEAAGHQIVGIDI--RDAEVIA------------DLSTAEGR 48
Query: 66 QKAVL-LCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFNVAR 124
++A+ + +D V CAG+ ++ VN G +
Sbjct: 49 KQAIADVLAKCSKGMDGLVLCAGLG-------------PQTKVLGNVVSVNYFGATELMD 95
Query: 125 LSAQLIHENKLNEDGLRGVIINTASIAAYE----------------------------GQ 156
+ + G + + +S+A+ Q
Sbjct: 96 AFLPAL------KKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQ 149
Query: 157 SGQVAYSASKSGIVGMTLPMARDLAGAGIRVNTIAPGLFDTPLLSML--NEKVRNFLARS 214
G +AY+ SK+ + A AG+R+NTIAPG +TPLL + + +A+
Sbjct: 150 GGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKF 209
Query: 215 IPAPQRLGHPDEFAQLVQ-------SIITNPLINGEVIRIDG 249
+P R P E A ++ S + G I IDG
Sbjct: 210 VPPMGRRAEPSEMASVIAFLMSPAASYVH-----GAQIVIDG 246
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 150 bits (380), Expect = 9e-45
Identities = 70/265 (26%), Positives = 112/265 (42%), Gaps = 45/265 (16%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
LVTGG G+G A G +V + T + D+T
Sbjct: 19 HMSRSVLVTGGNRGIGLAIARAFADAGDKVAI----TYRSGEPPEG----FLAVKCDITD 70
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSL------DDFKRILLVN 115
E V++A +++ G ++V + AG+ T L +DF ++ N
Sbjct: 71 TEQVEQAYKEIEETHGPVEVLIANAGV------------TKDQLLMRMSEEDFTSVVETN 118
Query: 116 TVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLP 175
GTF V + + + + K +G ++ +S+ G +GQ Y+ASK+G+VG
Sbjct: 119 LTGTFRVVKRANRAMLRAK------KGRVVLISSVVGLLGSAGQANYAASKAGLVGFARS 172
Query: 176 MARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ--- 232
+AR+L I N +APG DT + +L ++ R + +P R P+E A V+
Sbjct: 173 LARELGSRNITFNVVAPGFVDTDMTKVLTDEQRANIVSQVPL-GRYARPEEIAATVRFLA 231
Query: 233 ----SIITNPLINGEVIRIDGALRM 253
S IT G VI +DG L M
Sbjct: 232 SDDASYIT-----GAVIPVDGGLGM 251
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 148 bits (377), Expect = 2e-44
Identities = 66/237 (27%), Positives = 103/237 (43%), Gaps = 26/237 (10%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
+KG V L+TG + G+G+AT + +G RV L +++A EL P DV
Sbjct: 4 MKGAV-LITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELE-GALPLPGDVRE 61
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
E D +AV +++FG+L VN AG+ + +L++++ +L N G F
Sbjct: 62 EGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHEL------TLEEWRLVLDTNLTGAFL 115
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
R + + G I+N S+A G AY+ASK G++G+ DL
Sbjct: 116 GIRHAVPALLRRG------GGTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDLR 169
Query: 182 GAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSIITNP 238
A +RV + PG DT A + P P++ AQ V + P
Sbjct: 170 EANVRVVNVLPGSVDTG------------FAGNTPGQAWKLKPEDVAQAVLFALEMP 214
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 149 bits (378), Expect = 3e-44
Identities = 72/256 (28%), Positives = 112/256 (43%), Gaps = 25/256 (9%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAKEL---GPDVKFAPV 57
L G VTGG+ G+G A +R+ EG V L + +E ++V E+ G
Sbjct: 29 LAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRA 88
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTV 117
D E +++A+ ++ G LD+ VN AGI ++ ++ DF ++ VN
Sbjct: 89 DNRDAEAIEQAIRETVEALGGLDILVNSAGI------WHSAPLEETTVADFDEVMAVNFR 142
Query: 118 GTFNVARLSAQLIHENKLNEDGLRGVIINTAS-IAAYEGQSGQVAYSASKSGIVGMTLPM 176
F R +++ + + G II S +A G YSASK+ + G+T +
Sbjct: 143 APFVAIRSASRHLGDG--------GRIITIGSNLAELVPWPGISLYSASKAALAGLTKGL 194
Query: 177 ARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSIIT 236
ARDL GI VN + PG DT + + R I G P + A LV + +
Sbjct: 195 ARDLGPRGITVNIVHPGSTDTDMNPADGDHAEAQRER-IAT-GSYGEPQDIAGLV-AWLA 251
Query: 237 NPL---INGEVIRIDG 249
P + G + IDG
Sbjct: 252 GPQGKFVTGASLTIDG 267
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 148 bits (376), Expect = 5e-44
Identities = 75/270 (27%), Positives = 119/270 (44%), Gaps = 39/270 (14%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPV- 57
LKG LVTG +G+GKA +V EG V++ KE+ PD PV
Sbjct: 8 LKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVV 67
Query: 58 -DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNT 116
D+ +E+ Q + + + K+D+ +N GI + F+ +D+ ++ VN
Sbjct: 68 ADLGTEQGCQDVI----EKYPKVDILINNLGIFEPVEYFDI------PDEDWFKLFEVNI 117
Query: 117 VGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPM 176
+ + R + + E K G +I AS AA YSA+K+ + ++ +
Sbjct: 118 MSGVRLTRSYLKKMIERK------EGRVIFIASEAAIMPSQEMAHYSATKTMQLSLSRSL 171
Query: 177 ARDLAGAGIRVNTIAPGLFDTPLLSML------------NEKVRNFLARSIPAP--QRLG 222
A G + VNTI PG T + + E + F+ + P QRL
Sbjct: 172 AELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKENRPTSIIQRLI 231
Query: 223 HPDEFAQLVQSIITNPL---INGEVIRIDG 249
P+E A LV + +++PL ING +RIDG
Sbjct: 232 RPEEIAHLV-TFLSSPLSSAINGSALRIDG 260
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 148 bits (375), Expect = 9e-44
Identities = 72/271 (26%), Positives = 108/271 (39%), Gaps = 41/271 (15%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAKE---LGPDVKFAPV 57
L G V L TG G+G+ + R G VV+ +S+ E V E LG
Sbjct: 19 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQA 78
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVN 115
D++ +V FG LD ++ +G+ + + F ++ +N
Sbjct: 79 DISKPSEVVALFDKAVSHFGGLDFVMSNSGM--------EVWCDELEVTQELFDKVFNLN 130
Query: 116 TVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAA-YEGQSGQVAYSASKSGIVGMTL 174
T G F VA+ + G II T+SIAA G Y+ SK+ + G
Sbjct: 131 TRGQFFVAQQGLKHCRRG--------GRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCR 182
Query: 175 PMARDLAGAGIRVNTIAPGLFDTPL-------------LSMLNEKVRNFLARSIPAPQRL 221
A D G+ VN IAPG T + M EK+ LA P +R+
Sbjct: 183 AFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPL-KRI 241
Query: 222 GHPDEFAQLVQSIITNPL---INGEVIRIDG 249
G+P + + V S + ING+VI++ G
Sbjct: 242 GYPADIGRAV-SALCQEESEWINGQVIKLTG 271
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 148 bits (377), Expect = 1e-43
Identities = 69/285 (24%), Positives = 111/285 (38%), Gaps = 54/285 (18%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTS------------EGESVAKE-- 47
L+G V +TG A G G+ R+ ++G +V DL E + +
Sbjct: 44 LQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVE 103
Query: 48 -LGPDVKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLD 106
G + DV +Q V FG +D+ V+ GIS N + +
Sbjct: 104 EQGRRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGIS------NQGEVVSLTDQ 157
Query: 107 DFKRILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASK 166
+ IL N +G ++ R + E G G +I +S G GQ Y+ASK
Sbjct: 158 QWSDILQTNLIGAWHACRAVLP-----SMIERGQGGSVIFVSSTVGLRGAPGQSHYAASK 212
Query: 167 SGIVGMTLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDE 226
G+ G+ L +A ++ IRVN++ PG +T + LNEK+ + P R ++
Sbjct: 213 HGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMA--LNEKLLKMFLPHLENPTR----ED 266
Query: 227 FAQLVQSIITNPL----------------------INGEVIRIDG 249
A+L + P+ I+G I +DG
Sbjct: 267 AAELFSQLTLLPIPWVEPEDVSNAVAWLASDEARYIHGAAIPVDG 311
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 144 bits (366), Expect = 3e-42
Identities = 71/275 (25%), Positives = 113/275 (41%), Gaps = 41/275 (14%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAKEL---GPDVKFAPV 57
L+G V LVTG G+G+ + R G +V++ ++E E V + G D
Sbjct: 27 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKA 86
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVN 115
+V ED+ + FGKLD+ + +G+ + G V + ++F R+ +N
Sbjct: 87 NVGVVEDIVRMFEEAVKIFGKLDIVCSNSGV--------VSFGHVKDVTPEEFDRVFTIN 138
Query: 116 TVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAA-YEGQSGQVAYSASKSGIVGMTL 174
T G F VAR + + + G +I SI + YS SK I
Sbjct: 139 TRGQFFVAREAYKHLEIG--------GRLILMGSITGQAKAVPKHAVYSGSKGAIETFAR 190
Query: 175 PMARDLAGAGIRVNTIAPGLFDTPLLSMLN-------------EKVRNFLARSIPAPQRL 221
MA D+A I VN +APG T + + E + P +R+
Sbjct: 191 CMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPL-RRV 249
Query: 222 GHPDEFAQLVQSIITNPL---INGEVIRIDGALRM 253
G P + A++V + + + G+VI IDG M
Sbjct: 250 GLPIDIARVV-CFLASNDGGWVTGKVIGIDGGACM 283
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 143 bits (363), Expect = 6e-42
Identities = 67/268 (25%), Positives = 111/268 (41%), Gaps = 36/268 (13%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-ESVAKEL---GPDVKFAPV 57
L G V LVTG G+G A + R G +VV+ +++ E V E+ G D
Sbjct: 16 LDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKA 75
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTV 117
D+ ++ K FG LD+ V+ +G+ ++ + ++F R+ +NT
Sbjct: 76 DIRQVPEIVKLFDQAVAHFGHLDIAVSNSGV------VSFGHLKDVTEEEFDRVFSLNTR 129
Query: 118 GTFNVARLSAQLIHENKLNEDGLRGVIINTASIAA-YEGQSGQVAYSASKSGIVGMTLPM 176
G F VAR + + + E G I+ T+S + YS SK +
Sbjct: 130 GQFFVAREAYRHLTEG--------GRIVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVRIF 181
Query: 177 ARDLAGAGIRVNTIAPGLFDTPLL------------SMLNEKVRNFLARSIPAPQRLGHP 224
++D I VN +APG T + S E+ + A + P R G P
Sbjct: 182 SKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASPL-HRNGWP 240
Query: 225 DEFAQLVQSIITNPL---INGEVIRIDG 249
+ A +V + + +NG+V+ +DG
Sbjct: 241 QDVANVV-GFLVSKEGEWVNGKVLTLDG 267
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 143 bits (363), Expect = 7e-42
Identities = 65/285 (22%), Positives = 105/285 (36%), Gaps = 55/285 (19%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTS------------EGESVAKE-- 47
+G L+TGGA G+G++ + G + +CD + +
Sbjct: 8 FEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVE 67
Query: 48 -LGPDVKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLD 106
G A VDV ++ V +D+ G +D+ + AGIS
Sbjct: 68 KTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGIS------TIALLPEVESA 121
Query: 107 DFKRILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASK 166
+ ++ N GTFN A + + G I+ +S+ + Q +Y +SK
Sbjct: 122 QWDEVIGTNLTGTFNTIAAVAPGMIKRN------YGRIVTVSSMLGHSANFAQASYVSSK 175
Query: 167 SGIVGMTLPMARDLAGAGIRVNTIAPGLFDTPLLS---------------MLNEKVRNFL 211
G++G+T A DL G GI VN +APG +TP+ L + F
Sbjct: 176 WGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFA 235
Query: 212 ARSIPAPQRLGHPDEFAQLVQ-------SIITNPLINGEVIRIDG 249
+ + P+E + V S IT G V+ ID
Sbjct: 236 SLHLQ-YAPFLKPEEVTRAVLFLVDEASSHIT-----GTVLPIDA 274
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 141 bits (358), Expect = 2e-41
Identities = 54/248 (21%), Positives = 94/248 (37%), Gaps = 25/248 (10%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
LK + +VTG G+G V+ + R V ++A+ G V+ D+
Sbjct: 3 LKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAEIEG--VEPIESDIVK 59
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
E + V K+ +D V+ A ++ I S+ ++ L +N +
Sbjct: 60 EVLEEGGVDKLKN-LDHVDTLVHAAAVARDTTIEAG------SVAEWHAHLDLNVIVPAE 112
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
++R + G +I S A G Y+ASK + G+ ++ A
Sbjct: 113 LSRQLLPALRAA-------SGCVIYINSGAGNGPHPGNTIYAASKHALRGLADAFRKEEA 165
Query: 182 GAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSIITNPL-- 239
GIRV+T++PG +TP+L L + I P E A ++ +I
Sbjct: 166 NNGIRVSTVSPGPTNTPMLQGLMDSQGTNFRPEIY-----IEPKEIANAIRFVIDAGETT 220
Query: 240 -INGEVIR 246
I +R
Sbjct: 221 QITNVDVR 228
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 145 bits (369), Expect = 3e-41
Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 34/264 (12%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
L G V +VTG A G+G E R+G VV D+ + + +DVT+
Sbjct: 211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKVGGTALTLDVTA 270
Query: 62 EEDVQKAVLLCKDSFG-KLDVNVNCAGISCAFKIFNYNKGTVHSL------DDFKRILLV 114
++ V K + G K+D+ VN AGI T L + ++ V
Sbjct: 271 DDAVDKITAHVTEHHGGKVDILVNNAGI------------TRDKLLANMDEKRWDAVIAV 318
Query: 115 NTVGTFNVAR--LSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGM 172
N + + + I E G +I +S+A G GQ Y+ +K+G++G+
Sbjct: 319 NLLAPQRLTEGLVGNGTIGEG--------GRVIGLSSMAGIAGNRGQTNYATTKAGMIGL 370
Query: 173 TLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ 232
+A LA GI +N +APG +T + + R R + G P + A+L+
Sbjct: 371 AEALAPVLADKGITINAVAPGFIETKMTEAIPLATREVGRRLNSL-FQGGQPVDVAELI- 428
Query: 233 SIITNPL---INGEVIRIDGALRM 253
+ +P + G IR+ G +
Sbjct: 429 AYFASPASNAVTGNTIRVCGQAML 452
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 140 bits (356), Expect = 4e-41
Identities = 65/271 (23%), Positives = 106/271 (39%), Gaps = 37/271 (13%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPT-----SEGESVAKE---LGPDV 52
MLKG V LVTG + G+G+A +R+ +G V + E E E G
Sbjct: 4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAI----HYGNRKEEAEETVYEIQSNGGSA 59
Query: 53 KFAPVDVTSEEDVQKAV------LLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLD 106
++ S V+ L + K D+ +N AGI I +
Sbjct: 60 FSIGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFI------EETTEQ 113
Query: 107 DFKRILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASK 166
F R++ VN F + + + + +N IIN +S A +AYS +K
Sbjct: 114 FFDRMVSVNAKAPFFIIQQALSRLRDN--------SRIINISSAATRISLPDFIAYSMTK 165
Query: 167 SGIVGMTLPMARDLAGAGIRVNTIAPGLFDTPLLSML--NEKVRNFLARSIPAPQRLGHP 224
I MT +A+ L GI VN I PG T + + L + ++ + RLG
Sbjct: 166 GAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSDPMMKQYATTISAF-NRLGEV 224
Query: 225 DEFAQLVQSIITNPL--INGEVIRIDGALRM 253
++ A + + + G++I + G +
Sbjct: 225 EDIADTAAFLASPDSRWVTGQLIDVSGGSCL 255
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 140 bits (356), Expect = 5e-41
Identities = 51/243 (20%), Positives = 92/243 (37%), Gaps = 30/243 (12%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVD 58
+ G + L+TG G+G+ T + ++VL D+ E A + G V VD
Sbjct: 29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVD 88
Query: 59 VTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVG 118
++ ED+ + K G + + VN AG+ +F ++ VN +
Sbjct: 89 CSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFA------TQDPQIEKTFEVNVLA 142
Query: 119 TFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMAR 178
F + + +N G I+ AS A + +AY +SK VG +
Sbjct: 143 HFWTTKAFLPAMTKNN------HGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTD 196
Query: 179 DLAGA---GIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQ-LVQSI 234
+LA G++ + P +T + + L ++ P+E L+ I
Sbjct: 197 ELAALQITGVKTTCLCPNFVNTGFI----KNPSTSLGPTLE-------PEEVVNRLMHGI 245
Query: 235 ITN 237
+T
Sbjct: 246 LTE 248
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 135 bits (342), Expect = 4e-39
Identities = 54/262 (20%), Positives = 106/262 (40%), Gaps = 42/262 (16%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
++ LV + G+G+A + + +EG V +C + E + K G ++ D+
Sbjct: 17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTIC----ARNEELLKRSG--HRYVVCDLRK 70
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVNTVGT 119
+ D + + ++D+ V AG A G + +DFK + +
Sbjct: 71 DLD---LLF---EKVKEVDILVLNAGGPKA--------GFFDELTNEDFKEAIDSLFLNM 116
Query: 120 FNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARD 179
+ R + E G I+ S + ++++ + G ++ +
Sbjct: 117 IKIVRNYLPAMKEKG------WGRIVAITSFSVISPIENLYTSNSARMALTGFLKTLSFE 170
Query: 180 LAGAGIRVNTIAPGLFDTP-LLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQ------ 232
+A GI VN +APG +T + +L+E+ + + IP +R+ P+E A +V
Sbjct: 171 VAPYGITVNCVAPGWTETERVKELLSEEKKKQVESQIPM-RRMAKPEEIASVVAFLCSEK 229
Query: 233 -SIITNPLINGEVIRIDGALRM 253
S +T G+ I +DG L
Sbjct: 230 ASYLT-----GQTIVVDGGLSK 246
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 135 bits (342), Expect = 3e-38
Identities = 55/265 (20%), Positives = 91/265 (34%), Gaps = 36/265 (13%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG-------ESVAKE---LGPD 51
L G +TG + G+GKA + ++G +V+ + A+E +G
Sbjct: 43 LAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGK 102
Query: 52 VKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRI 111
VDV E+ + AV FG +D+ VN A + +
Sbjct: 103 ALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDT------PTKRLDLM 156
Query: 112 LLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQ--SGQVAYSASKSGI 169
+ VNT GT+ ++ + ++K I+N + AY+ +K G+
Sbjct: 157 MNVNTRGTYLASKACIPYLKKSK------VAHILNISPPLNLNPVWFKQHCAYTIAKYGM 210
Query: 170 VGMTLPMARDLAGAGIRVNTIAPGLF-DTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFA 228
L MA + G I VN + P T + ML + D A
Sbjct: 211 SMYVLGMAEEFKG-EIAVNALWPKTAIHTAAMDMLGGPG---------IESQCRKVDIIA 260
Query: 229 QLVQSIITNP-LINGEVIRIDGALR 252
SI P G + + L+
Sbjct: 261 DAAYSIFQKPKSFTGNFVIDENILK 285
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 129 bits (327), Expect = 2e-36
Identities = 39/237 (16%), Positives = 83/237 (35%), Gaps = 28/237 (11%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL----GPDVKFAP 56
ML+G +VTG + G+G+ + + G VV+ + V +
Sbjct: 25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIA 84
Query: 57 VDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNT 116
+ ++ V G LD+ + + + +F+ + ++ + VN
Sbjct: 85 GTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFH------DDIHHVRKSMEVNF 138
Query: 117 VGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPM 176
+ + + ++ ++ G I+ +S+A AYSASK + G +
Sbjct: 139 LSYVVLTVAALPMLKQSN-------GSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSI 191
Query: 177 ARDLA--GAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLV 231
++ + + + GL DT K + + AP +E A +
Sbjct: 192 RKEYSVSRVNVSITLCVLGLIDTETA----MKAVSGIVHMQAAP-----KEECALEI 239
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 126 bits (319), Expect = 3e-36
Identities = 40/241 (16%), Positives = 82/241 (34%), Gaps = 47/241 (19%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDVQK 67
L+ G + LG A ER+ + V+ G VD+T+ + ++K
Sbjct: 7 LLIGASGTLGSAVKERL-EKKAEVITA--------------GRHSGDVTVDITNIDSIKK 51
Query: 68 AVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFNVARLSA 127
+ GK+D V+ G + + + + + G N+ L
Sbjct: 52 MY----EQVGKVDAIVSATGSATFSPLTEL------TPEKNAVTISSKLGGQINLVLLGI 101
Query: 128 QLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLAGAGIRV 187
+++ G T I + + + + + A ++ GIR+
Sbjct: 102 DSLNDK--------GSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEMPR-GIRI 152
Query: 188 NTIAPGLFDTPLLSMLNEKVRNFLARSIPAP-QRLGHPDEFAQLVQSIITNPLINGEVIR 246
NT++P + + +K+ F +P P ++ F + V T GE +
Sbjct: 153 NTVSPNVLEESW-----DKLEPFFEGFLPVPAAKVARA--FEKSVFGAQT-----GESYQ 200
Query: 247 I 247
+
Sbjct: 201 V 201
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 126 bits (319), Expect = 4e-36
Identities = 39/233 (16%), Positives = 74/233 (31%), Gaps = 39/233 (16%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDVQK 67
L+TG GLG A +G ++L +A+E+G P D+ E + +
Sbjct: 4 LITGATGGLGGAFARA--LKGHDLLLSGRRAGALAELAREVGARA--LPADLADELEAKA 59
Query: 68 AVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVNTVGTFNVARL 125
+ + G LD+ V+ G + +V D + +L + + V +
Sbjct: 60 LL----EEAGPLDLLVHAVGKAGR--------ASVREAGRDLVEEMLAAHLLTAAFVLKH 107
Query: 126 SAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLAGAGI 185
+ + Y G AY+A+K + ++L G+
Sbjct: 108 ---------ARFQK-GARAVFFGAYPRYVQVPGFAAYAAAKGALEAYLEAARKELLREGV 157
Query: 186 RVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSIITNP 238
+ + T A P+ P+E A+ V +
Sbjct: 158 HLVLVRLPAVATG-----------LWAPLGGPPKGALSPEEAARKVLEGLFRE 199
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 127 bits (320), Expect = 7e-36
Identities = 48/266 (18%), Positives = 98/266 (36%), Gaps = 30/266 (11%)
Query: 2 LKGVVGLVTGGASGLGKATVE---RIVREGGRVVLCDLPTSEGESVAKEL-----GPDVK 53
L V ++TG + G G+A R++ G +++ S + +EL V
Sbjct: 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVV 63
Query: 54 FAPVDVTSEEDVQKAV----LLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDD 107
A D+ +E VQ+ + L + + + +N A + + +KG ++ L +
Sbjct: 64 LAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAAT-----LGDVSKGFLNVNDLAE 118
Query: 108 FKRILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKS 167
+N + + ++ GL ++N +S+ A + G Y A K+
Sbjct: 119 VNNYWALNLTSMLCLTSGTLNAFQDSP----GLSKTVVNISSLCALQPYKGWGLYCAGKA 174
Query: 168 GIVGMTLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQ----RLGH 223
+ +A + +RV + APG D + + E ++ RS L
Sbjct: 175 ARDMLYQVLAAE--EPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGALVD 232
Query: 224 PDEFAQLVQSIITNP-LINGEVIRID 248
AQ + ++ +G +
Sbjct: 233 CGTSAQKLLGLLQKDTFQSGAHVDFY 258
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 128 bits (323), Expect = 1e-35
Identities = 71/264 (26%), Positives = 112/264 (42%), Gaps = 26/264 (9%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG----------ESVAKE--- 47
++ G V +VTG G+G+A EG RVV+ D+ +SV E
Sbjct: 24 VVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITA 83
Query: 48 LGPDVKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDD 107
G + +V + + ++FG LDV VN AGI I N S ++
Sbjct: 84 AGGEAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANT------SEEE 137
Query: 108 FKRILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKS 167
F ++ V+ G F R +A + G IINT+S A +G GQ YSA+K+
Sbjct: 138 FDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQGSVGQGNYSAAKA 197
Query: 168 GIVGMTLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEF 227
GI +TL A ++ G+ VN IAP + + E V + + P+
Sbjct: 198 GIATLTLVGAAEMGRYGVTVNAIAPS-----ARTRMTETVFAEMMATQDQDFDAMAPENV 252
Query: 228 AQLVQSIIT--NPLINGEVIRIDG 249
+ LV + + + G+V ++G
Sbjct: 253 SPLVVWLGSAEARDVTGKVFEVEG 276
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 125 bits (317), Expect = 2e-35
Identities = 59/245 (24%), Positives = 104/245 (42%), Gaps = 26/245 (10%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPVD 58
L+G V L+TG +SG+G+AT + EG V + + ++ EL G V +D
Sbjct: 5 LQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELD 64
Query: 59 VTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVG 118
V + V AV ++ G LD+ VN AGI + + + D+ R++ N +G
Sbjct: 65 VADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDAD------TTDWTRMIDTNLLG 118
Query: 119 TFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMAR 178
+ R + + +K G ++ +SIA Y A+K G+ + + +
Sbjct: 119 LMYMTRAALPHLLRSK-------GTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQ 171
Query: 179 DLAGAGIRVNTIAPGLFDTPLLSMLN-----EKVRNFLARSIPAPQRLGHPDEFAQLVQS 233
++ G+RV I PG DT L + E +++ + A+ V+
Sbjct: 172 EVTERGVRVVVIEPGTTDTELRGHITHTATKEMYEQRISQIRKLQ-----AQDIAEAVRY 226
Query: 234 IITNP 238
+T P
Sbjct: 227 AVTAP 231
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 121 bits (307), Expect = 4e-34
Identities = 40/202 (19%), Positives = 79/202 (39%), Gaps = 23/202 (11%)
Query: 6 VGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL----GPDVKFAPVDVTS 61
V ++TG + G+G+A + R+G + L E +A EL G +V + +DV+
Sbjct: 4 VAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSK 63
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
E V++ + FG +DV V AG+ ++ S ++F ++ VN +G +
Sbjct: 64 AESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEEL------SEEEFHEMIEVNLLGVWR 117
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIA--AYEGQSGQVAYSASKSGIVGMTLPMARD 179
+ + ++ T+ ++ G Y ++K + +
Sbjct: 118 TLKAFLDSLKRTG------GLALVTTSDVSARLIPYGGG---YVSTKWAARALVRTFQIE 168
Query: 180 LAGAGIRVNTIAPGLFDTPLLS 201
+R + PG DT
Sbjct: 169 --NPDVRFFELRPGAVDTYFGG 188
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 120 bits (304), Expect = 3e-33
Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 17/205 (8%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPV 57
M+ V L+TG + G+G+ + G +++L + E++A E+ G +
Sbjct: 1 MVMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVL 60
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTV 117
DVT V D++G++DV VN AG+ + +D+++R++ VN
Sbjct: 61 DVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVK------VDEWERMIDVNIK 114
Query: 118 GTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMA 177
G ++ + G IIN SI A Y A+K + ++ +
Sbjct: 115 GVLWGIGAVLPIMEAQR------SGQIINIGSIGALSVVPTAAVYCATKFAVRAISDGLR 168
Query: 178 RDLAGAGIRVNTIAPGLFDTPLLSM 202
++ IRV + PG+ ++ L
Sbjct: 169 QE--STNIRVTCVNPGVVESELAGT 191
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 120 bits (303), Expect = 8e-33
Identities = 61/201 (30%), Positives = 85/201 (42%), Gaps = 21/201 (10%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG---------ESVAKELGPDV 52
G V LVTG GLG+A G VV+ DL + V +E+
Sbjct: 7 FDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG 66
Query: 53 KFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRIL 112
A + S E +K V D+FG++DV VN AGI S +D+ I
Sbjct: 67 GKAVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSR------ISDEDWDIIQ 120
Query: 113 LVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGM 172
V+ G+F V R + + + G II TAS + G GQ YSA+K G++G+
Sbjct: 121 RVHLRGSFQVTRAAWDHMKKQN------YGRIIMTASASGIYGNFGQANYSAAKLGLLGL 174
Query: 173 TLPMARDLAGAGIRVNTIAPG 193
+ + I NTIAP
Sbjct: 175 ANTLVIEGRKNNIHCNTIAPN 195
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 118 bits (298), Expect = 1e-32
Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 15/199 (7%)
Query: 6 VGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDV 65
+ LVTG +G G+ R +++G +V+ + + ELG ++ A +DV + +
Sbjct: 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAI 61
Query: 66 QKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVNTVGTFNVA 123
++ + + +D+ VN AG++ H S++D++ ++ N G +
Sbjct: 62 EEMLASLPAEWCNIDILVNNAGLA-------LGMEPAHKASVEDWETMIDTNNKGLVYMT 114
Query: 124 RLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLAGA 183
R + E G IIN S A +G Y A+K+ + +L + DL G
Sbjct: 115 RAVLPGMVERN------HGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGT 168
Query: 184 GIRVNTIAPGLFDTPLLSM 202
+RV I PGL S
Sbjct: 169 AVRVTDIEPGLVGGTEFSN 187
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 116 bits (294), Expect = 3e-32
Identities = 45/242 (18%), Positives = 86/242 (35%), Gaps = 30/242 (12%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDVQK 67
++TG +SGLG + EG L S+ +V L +V + D+ S ++V++
Sbjct: 5 VITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQ 64
Query: 68 AVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVNTVGTFNVARL 125
+ V+ AG G + + + ++ N NV R
Sbjct: 65 LF---EQLDSIPSTVVHSAGSGYF--------GLLQEQDPEQIQTLIENNLSSAINVLRE 113
Query: 126 SAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLAGAGI 185
+ + ++ S AA + ++ + Y A K + G+ + +L G +
Sbjct: 114 LVKRYKDQP-------VNVVMIMSTAAQQPKAQESTYCAVKWAVKGLIESVRLELKGKPM 166
Query: 186 RVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSIITNPLINGEVI 245
++ + PG T E L S ++ A ++ + N NG V
Sbjct: 167 KIIAVYPGGMATEFW----ETSGKSLDTSSFMS-----AEDAALMIHGALANIG-NGYVS 216
Query: 246 RI 247
I
Sbjct: 217 DI 218
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 116 bits (293), Expect = 9e-32
Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 15/201 (7%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
+ ++TG +SG+G+A R EG ++L +++ + A VDVT
Sbjct: 14 SMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLP---NTLCAQVDVTD 70
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFN 121
+ A+ + +G D VN AG+ +I ++++R+ VN +G N
Sbjct: 71 KYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQE------ANEWQRMFDVNVLGLLN 124
Query: 122 VARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA 181
+ + G IIN +SIA + AY +K + ++ + ++A
Sbjct: 125 GMQAVLAPMKARN------CGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVA 178
Query: 182 GAGIRVNTIAPGLFDTPLLSM 202
+ +RV TIAP T LLS
Sbjct: 179 ASNVRVMTIAPSAVKTELLSH 199
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 120 bits (304), Expect = 2e-31
Identities = 54/201 (26%), Positives = 87/201 (43%), Gaps = 21/201 (10%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG---------ESVAKELGPDV 52
K V ++TG GLGK + G +VV+ DL + + V E+ +
Sbjct: 6 FKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNG 65
Query: 53 KFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRIL 112
A D + D K V +FG + V +N AGI + + D+K ++
Sbjct: 66 GVAVADYNNVLDGDKIVETAVKNFGTVHVIINNAGILRDASMKK------MTEKDYKLVI 119
Query: 113 LVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGM 172
V+ G F V + + + K G I+NT+S A G GQ Y+++KS ++G
Sbjct: 120 DVHLNGAFAVTKAAWPYFQKQK------YGRIVNTSSPAGLYGNFGQANYASAKSALLGF 173
Query: 173 TLPMARDLAGAGIRVNTIAPG 193
+A++ A I+ N IAP
Sbjct: 174 AETLAKEGAKYNIKANAIAPL 194
Score = 110 bits (276), Expect = 9e-28
Identities = 59/196 (30%), Positives = 91/196 (46%), Gaps = 19/196 (9%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKE---LGPDVKFAPV 57
LK V L+TG +GLGK + + G +VV+ D + E G +
Sbjct: 319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDF--KDATKTVDEIKAAGGEAWPDQH 376
Query: 58 DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTV 117
DV +D + + D +G +D+ VN AGI S ++ + V+ +
Sbjct: 377 DVA--KDSEAIIKNVIDKYGTIDILVNNAGILRDRSFAK------MSKQEWDSVQQVHLI 428
Query: 118 GTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMA 177
GTFN++RL+ E + G IIN S + G GQ YS+SK+GI+G++ MA
Sbjct: 429 GTFNLSRLAWPYFVEKQ------FGRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMA 482
Query: 178 RDLAGAGIRVNTIAPG 193
+ A I+VN +AP
Sbjct: 483 IEGAKNNIKVNIVAPH 498
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 116 bits (292), Expect = 2e-31
Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 21/210 (10%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL---GPDVKFAPV- 57
+ + LVTG + G+G A +V++G +VV C E +A E G P
Sbjct: 30 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYR 89
Query: 58 -DVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNT 116
D+++EED+ + +D+ +N AG++ + + + +K + VN
Sbjct: 90 CDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGS------TSGWKDMFNVNV 143
Query: 117 VGTFNVARLSAQLIHENKLNEDGLRGVIINTASIA---AYEGQSGQVAYSASKSGIVGMT 173
+ R + Q + E ++ G IIN S++ YSA+K + +T
Sbjct: 144 LALSICTREAYQSMKERNVD----DGHIININSMSGHRVLPLSVTHF-YSATKYAVTALT 198
Query: 174 LPMARDLAGAG--IRVNTIAPGLFDTPLLS 201
+ ++L A IR I+PG+ +T
Sbjct: 199 EGLRQELREAQTHIRATCISPGVVETQFAF 228
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 112 bits (282), Expect = 4e-30
Identities = 49/202 (24%), Positives = 77/202 (38%), Gaps = 16/202 (7%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPV--DV 59
+TG SG G+A R G +VL +++A EL + P+ DV
Sbjct: 19 HMSSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDV 78
Query: 60 TSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRILLVNTV 117
+ AV + F L +N AG++ LDD+ ++ N
Sbjct: 79 RDRAAMSAAVDNLPEEFATLRGLINNAGLA-------LGTDPAQSCDLDDWDTMVDTNIK 131
Query: 118 GTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMA 177
G R L +L G I+N S+A G Y +K+ + +L +
Sbjct: 132 GLLYSTR--LLL---PRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLR 186
Query: 178 RDLAGAGIRVNTIAPGLFDTPL 199
DL G G+RV + PGL ++
Sbjct: 187 CDLQGTGVRVTNLEPGLCESEF 208
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 116 bits (292), Expect = 8e-30
Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 21/201 (10%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEG---------ESVAKELGPDV 52
G V +VTG +GLG+ G +VV+ DL + + V E+
Sbjct: 17 YDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAG 76
Query: 53 KFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRIL 112
A D S D K + +FG++D+ VN AGI + S D+ +
Sbjct: 77 GEAVADYNSVIDGAKVIETAIKAFGRVDILVNNAGILRDRSLVK------TSEQDWNLVN 130
Query: 113 LVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGM 172
V+ G+F + + + + G II T+S + G GQV Y+A+K G++G+
Sbjct: 131 DVHLKGSFKCTQAAFPYMKKQN------YGRIIMTSSNSGIYGNFGQVNYTAAKMGLIGL 184
Query: 173 TLPMARDLAGAGIRVNTIAPG 193
+A + A + N I P
Sbjct: 185 ANTVAIEGARNNVLCNVIVPT 205
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 111 bits (279), Expect = 2e-29
Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 16/196 (8%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDVQK 67
LVTG +SG G+A E V G V+ T + + + +DVT E +
Sbjct: 9 LVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDV 68
Query: 68 AVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTV--HSLDDFKRILLVNTVGTFNVARL 125
+G++DV VN AG + G + + + + ++ G + R
Sbjct: 69 VAADVLARYGRVDVLVNNAGRTQV--------GAFEETTERELRDLFELHVFGPARLTRA 120
Query: 126 SAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLAGAGI 185
+ E G ++N +S +G AYSA+K+ + ++ +A ++A GI
Sbjct: 121 LLPQMRERG------SGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAPFGI 174
Query: 186 RVNTIAPGLFDTPLLS 201
+V + PG F T L
Sbjct: 175 KVLIVEPGAFRTNLFG 190
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 110 bits (277), Expect = 4e-29
Identities = 48/208 (23%), Positives = 81/208 (38%), Gaps = 23/208 (11%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGG---RVVLCDLPTSEGESVAKEL-----GPDVK 53
L L+TG ++G+GKAT + +++L + E + K + V
Sbjct: 31 LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVH 90
Query: 54 FAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFKRI 111
A +D+T E ++ + F +D+ VN AG + V + +D + +
Sbjct: 91 VAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKA-------LGSDRVGQIATEDIQDV 143
Query: 112 LLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVG 171
N N+ + + G I+N SIA + Y ASK +
Sbjct: 144 FDTNVTALINITQAVLPIFQAKN------SGDIVNLGSIAGRDAYPTGSIYCASKFAVGA 197
Query: 172 MTLPMARDLAGAGIRVNTIAPGLFDTPL 199
T + ++L IRV IAPGL +T
Sbjct: 198 FTDSLRKELINTKIRVILIAPGLVETEF 225
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 107 bits (268), Expect = 1e-27
Identities = 55/228 (24%), Positives = 96/228 (42%), Gaps = 34/228 (14%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVV--------LCDLPTSEGESVAKELGPDV 52
M K ++ L+TG +SG G+ T E + G RV A++ D+
Sbjct: 3 MSKKII-LITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDL 61
Query: 53 KFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTV--HSLDDFKR 110
+ +DV S+ V +A+ G++DV ++ AG G + + F
Sbjct: 62 RTLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVF--------GPAEAFTPEQFAE 113
Query: 111 ILLVNTVGTFNVARLSAQLIHENKLNEDGLR----GVIINTASIAAYEGQSGQVA-YSAS 165
+ +N + T V R A L H +R G++I +S ++ G +A Y A+
Sbjct: 114 LYDINVLSTQRVNR--AALPH--------MRRQKHGLLIWISSSSSAGGTPPYLAPYFAA 163
Query: 166 KSGIVGMTLPMARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLAR 213
K+ + + + AR+L+ GI + I PG F + + V + AR
Sbjct: 164 KAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTNHFAHSGVPDDHAR 211
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 97.0 bits (242), Expect = 2e-24
Identities = 46/213 (21%), Positives = 74/213 (34%), Gaps = 22/213 (10%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGG--RVVLCDLPTSEGESVAKELGPDVKFAPVD 58
M G V +VTG G+G V+++V++ ++ + + V P+
Sbjct: 1 MSPGSV-VVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLT 59
Query: 59 VTSEEDVQKAVLLCKDSFG--KLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNT 116
VT ++ + V + G L + +N AG+ +Y T + L VNT
Sbjct: 60 VTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVL-----LSYGTNTEPNRAVIAEQLDVNT 114
Query: 117 VGTFNVAR-----LSAQLIHENKLNEDGLRGVIIN----TASIAAYEGQSGQV---AYSA 164
+ + L E+ R +I SI S Q AY
Sbjct: 115 TSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRM 174
Query: 165 SKSGIVGMTLPMARDLAGAGIRVNTIAPGLFDT 197
SK+ I +A DL + V PG T
Sbjct: 175 SKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQT 207
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 92.4 bits (230), Expect = 1e-22
Identities = 42/206 (20%), Positives = 69/206 (33%), Gaps = 22/206 (10%)
Query: 8 LVTGGASGLGKATVERIV---REGGRVVLC--DLPTSEGESVAKELGPDVKFAPVDVTSE 62
L+TG GLG V+ ++ + + + ++ + ++ +D+ +
Sbjct: 25 LITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNF 84
Query: 63 EDVQKAVLLCKDSFG--KLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTF 120
+ K V + L+V N AGI+ V + L NTV
Sbjct: 85 DAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARI----TAV-RSQELLDTLQTNTVVPI 139
Query: 121 NVAR-----LSAQLIHENKLNEDGLRGVIINT----ASIAAYEGQSGQVAYSASKSGIVG 171
+A+ L R IIN SI G AY SKS +
Sbjct: 140 MLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTD-GGMYAYRTSKSALNA 198
Query: 172 MTLPMARDLAGAGIRVNTIAPGLFDT 197
T ++ DL I ++ PG T
Sbjct: 199 ATKSLSVDLYPQRIMCVSLHPGWVKT 224
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 91.9 bits (228), Expect = 5e-22
Identities = 50/265 (18%), Positives = 87/265 (32%), Gaps = 68/265 (25%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL----GPDVKFAP 56
+ K +VTGG G+G +++ G VVL ++G ++L +V F
Sbjct: 9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQ 68
Query: 57 VDVTSEED-VQKAVLLCKDSFGKLDVNVNCAGISC------------------------A 91
+DVT + K FGKLD+ VN AG++
Sbjct: 69 LDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKI 128
Query: 92 FKIFNYNKGTVHSLDDFKRILLVNTVGTFNVARL-------------------------- 125
++ + + + + L +N G +V +
Sbjct: 129 YEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDSPRIVNVSSSTGSLKYV 188
Query: 126 -----SAQLIHENKLNEDGLRGVI------INTASIAAYEGQSGQVAYSASKSGIVGMTL 174
L + L E+ + V+ I S AY+ SK+ + T
Sbjct: 189 SNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYTR 248
Query: 175 PMARDLAGAGIRVNTIAPGLFDTPL 199
+A + +VN + PGL T +
Sbjct: 249 VLANKI--PKFQVNCVCPGLVKTEM 271
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 88.6 bits (220), Expect = 4e-21
Identities = 54/237 (22%), Positives = 88/237 (37%), Gaps = 51/237 (21%)
Query: 6 VGLVTGGASGLGKATVERIV-REGGRVVL-C-DLPTSEGESVAKEL---GPDVKFAPVDV 59
V LVTGG G+G A V + G VVL D+ + G++ ++L G +F +D+
Sbjct: 6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDV--TRGQAAVQQLQAEGLSPRFHQLDI 63
Query: 60 TSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGT 119
+ ++ + +G LDV VN AGI AFK+ + + + N GT
Sbjct: 64 DDLQSIRALRDFLRKEYGGLDVLVNNAGI--AFKVADPTP----FHIQAEVTMKTNFFGT 117
Query: 120 FNVARL-----------------------------SAQLIHENKLNEDGLRGV----IIN 146
+V Q + E+ L G+ + +
Sbjct: 118 RDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVED 177
Query: 147 TASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLA----GAGIRVNTIAPGLFDTPL 199
T + AY +K G+ ++ AR L+ G I +N PG T +
Sbjct: 178 TKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDM 234
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 85.9 bits (213), Expect = 9e-20
Identities = 46/225 (20%), Positives = 81/225 (36%), Gaps = 38/225 (16%)
Query: 8 LVTGGASGLGKATVERIVRE---GGRVV-----LCDLPTSEGESVAKELGPD-VKFAPVD 58
L+TG +SG+G R+ + +V L + A P ++ +D
Sbjct: 6 LITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLD 65
Query: 59 VTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTV--HSLDDFKRILLVNT 116
V + V A + G++DV V AG+ G + D +L VN
Sbjct: 66 VRDSKSVAAARERVTE--GRVDVLVCNAGLGLL--------GPLEALGEDAVASVLDVNV 115
Query: 117 VGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPM 176
VGT + + + G ++ T S+ G Y ASK + G+ +
Sbjct: 116 VGTVRMLQAFLPDMKRRG------SGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESL 169
Query: 177 ARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRL 221
A L G+ ++ I G T F+ + + +P+ +
Sbjct: 170 AVLLLPFGVHLSLIECGPVHT-----------AFMEKVLGSPEEV 203
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 80.0 bits (198), Expect = 7e-18
Identities = 53/233 (22%), Positives = 91/233 (39%), Gaps = 39/233 (16%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
++TG SGLG T + R G V++ T +GE+ A+ + V+ +D+
Sbjct: 14 FAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQD 73
Query: 62 EEDVQKAVLLCKDSFGKLDVNVNCAGI-SCAFKIFNYNKGTVHSLDDFKRILLVNTVGTF 120
V++ D DV +N AGI + + ++D F+ + N +G F
Sbjct: 74 LSSVRRFA----DGVSGADVLINNAGIMAVPYA---------LTVDGFESQIGTNHLGHF 120
Query: 121 NVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQ-------------SGQVAYSASKS 167
L+ L+ L ++ +S+A + G+ S +AYS SK
Sbjct: 121 ---ALTNLLL-------PRLTDRVVTVSSMAHWPGRINLEDLNWRSRRYSPWLAYSQSKL 170
Query: 168 GIVGMTLPMARDLAGAGIRVNTIA--PGLFDTPLLSMLNEKVRNFLARSIPAP 218
+ T + R L AG + +A PG T L K+ + L +
Sbjct: 171 ANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGRKLGDALMSAATRV 223
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 64.5 bits (157), Expect = 2e-12
Identities = 21/173 (12%), Positives = 48/173 (27%), Gaps = 25/173 (14%)
Query: 2 LKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGP--DVKFAPVDV 59
+KG +V G +G + + EG VVLC + ++ A + V +
Sbjct: 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAET 176
Query: 60 TSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGT 119
+ +AV I + + + + + N
Sbjct: 177 ADDASRAEAV-------KGAHFVFTAGAIG----LELLPQAAWQNESSIEIVADYNAQPP 225
Query: 120 FNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGM 172
+ + A ++ G ++ G + ++ I +
Sbjct: 226 LGIGGIDAT-------DKGKEYGGKRAFGALGI-----GGLKLKLHRACIAKL 266
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 56.2 bits (136), Expect = 1e-09
Identities = 48/260 (18%), Positives = 78/260 (30%), Gaps = 75/260 (28%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDVQK 67
LVTG A LG+ ER+ + L DL + GP+ + D+ V
Sbjct: 7 LVTGAAGQLGRVMRERLAPMAEILRLADLSPLD------PAGPNEECVQCDLADANAVNA 60
Query: 68 AVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFNVARLSA 127
D V+ GIS F++IL N +G +N+ A
Sbjct: 61 M-------VAGCDGIVHLGGIS--------------VEKPFEQILQGNIIGLYNL--YEA 97
Query: 128 QLIHENKLNEDGLRGV--IINTASIAAYEGQSGQVA-------------YSASKSGIVGM 172
H G I+ +S G Q Y SK +
Sbjct: 98 ARAH----------GQPRIVFASSNHTI-GYYPQTERLGPDVPARPDGLYGVSKCFGENL 146
Query: 173 TLPMAR--DLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQL 230
A +R+ + P + +LS + D+F L
Sbjct: 147 ARMYFDKFGQETALVRIGSCTPEPNNYRMLST-------WF-----------SHDDFVSL 188
Query: 231 VQSIITNPLINGEVIRIDGA 250
++++ P++ V+ A
Sbjct: 189 IEAVFRAPVLGCPVVWGASA 208
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 48.1 bits (115), Expect = 9e-07
Identities = 29/173 (16%), Positives = 61/173 (35%), Gaps = 48/173 (27%)
Query: 8 LVTGGASGLGKATVERIVREGG--RVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDV 65
LVTG + +G V + + G V+ D+ + +KF +DV++ +++
Sbjct: 3 LVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRD--------TGGIKFITLDVSNRDEI 54
Query: 66 QKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFNVARL 125
+AV +D + AGI + D VN GT+N+
Sbjct: 55 DRAV-----EKYSIDAIFHLAGIL-----------SAKGEKDPALAYKVNMNGTYNILEA 98
Query: 126 SAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVA------------YSASK 166
+ + + V+I ++I + ++ + + +K
Sbjct: 99 AK---------QHRVEKVVI-PSTIGVFGPETPKNKVPSITITRPRTMFGVTK 141
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 47.7 bits (114), Expect = 1e-06
Identities = 30/159 (18%), Positives = 46/159 (28%), Gaps = 51/159 (32%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCD-LPTSEGESVAKELGPDVKFAPVDV 59
ML + LVTG A G+G A + V L D + E + D+
Sbjct: 1 MLNRL--LVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAE-------AHEEIVACDL 51
Query: 60 TSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGT 119
+ V D ++ G+S +D IL N +G
Sbjct: 52 ADAQAVHDL-------VKDCDGIIHLGGVS-----------VERPWND---ILQANIIGA 90
Query: 120 FNV---ARLSAQLIHENKLNEDGLRGV--IINTASIAAY 153
+N+ AR G I+ +S
Sbjct: 91 YNLYEAARNL---------------GKPRIVFASSNHTI 114
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 47.3 bits (113), Expect = 2e-06
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 21/117 (17%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLC--DLPTSEGESVAKELGPDVKFAPVDVTSEEDV 65
+V GGA +G V+R++ G V +L ++E +V P V+F+ +T + +
Sbjct: 36 MVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDH--PAVRFSETSITDDALL 93
Query: 66 QKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFNV 122
+ D + A G S+ D NT+ T +
Sbjct: 94 ASL-------QDEYDYVFHLATYH----------GNQSSIHDPLADHENNTLTTLKL 133
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 3e-06
Identities = 53/341 (15%), Positives = 98/341 (28%), Gaps = 127/341 (37%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRV----VLCDLPTSEGESVAKE-----LGPD 51
M K + L K ++ I+ V L S+ E + ++ L +
Sbjct: 41 MPKSI----------LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 52 ---------------------------------VKFAPVDVTSEEDV---QKAVLLCKDS 75
FA +V+ + ++A+L + +
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 76 ----------FGK--LDVNVNCA--GISCA--FKIFNYNKGTVHSLDDFKRIL--LVNTV 117
GK + ++V C + C FKIF N +S + +L L+ +
Sbjct: 151 KNVLIDGVLGSGKTWVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 118 GTFNVARLSA-----QLIHENK-------LNEDGLRGVII-----NTASIAAYEGQSGQV 160
+R IH + ++ +++ N + A+
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS---- 265
Query: 161 AYSASKSGIVGMTLPMARD------LAGAG---IRVNTIAPGLFDTPLLSMLNEKVRNFL 211
K L R L+ A I ++ + L + S+L K +
Sbjct: 266 ----CK------ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDCR 314
Query: 212 ARSIPAPQRLGHPDEFAQLVQSIITNPLINGEVIRIDGALR 252
+ +P +P SII E IR DG
Sbjct: 315 PQDLPREVLTTNP-----RRLSII------AESIR-DGLAT 343
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 4e-06
Identities = 31/153 (20%), Positives = 52/153 (33%), Gaps = 41/153 (26%)
Query: 7 GLVTGGAS--G--LG--------------KATVERIVREGGRVVLCDLPTSE-GES---- 43
GL+ A+ G LG ++ V +V G + +P E G S
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMSIESLV-EVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 44 VAKELGPDVKFAPVDVTSEEDVQKAV-LLCKDSFGKLD-VNVNCAG--ISCAFKIFNYNK 99
+A + P S+E +Q V + K + ++ VN N A
Sbjct: 1810 IA--INPG---RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA-------- 1856
Query: 100 GTVHSLDDFKRILLVNTVGTFNVARLSAQLIHE 132
G + +LD +L + ++ L L E
Sbjct: 1857 GDLRALDTVTNVLNFIKLQKIDIIELQKSLSLE 1889
Score = 42.0 bits (98), Expect = 1e-04
Identities = 40/249 (16%), Positives = 75/249 (30%), Gaps = 75/249 (30%)
Query: 35 DLPTSEGESVAKELGPDVKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKI 94
D PT+ E V K LG + V+S + K F ++ ++
Sbjct: 52 DEPTTPAELVGKFLG----Y----VSSLVEPSKV-----GQFDQV--------LNLCLTE 90
Query: 95 F--NYNKGT-VHSL------DDFKRILLVNTV-GTFNVARLSAQ----LIHENKLNEDGL 140
F Y +G +H+L ++ ++ + + AR+ A+ + L
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL----F 146
Query: 141 RGVIINTASIAA-YEGQSG---------QVAYSASKSGIVGMTLPMAR---DLAGAGIRV 187
R V A + A + GQ G + Y + + A +L +
Sbjct: 147 RAVGEGNAQLVAIFGGQ-GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 188 NTIAPGLFDTPLLSMLNEKVR----NFLAR---SIP------------APQRLG-HPDEF 227
+ + +L L ++L S P + LG P E
Sbjct: 206 EKVFTQGLN--ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 228 AQLVQSIIT 236
++
Sbjct: 264 RSYLKGATG 272
Score = 39.3 bits (91), Expect = 0.001
Identities = 42/237 (17%), Positives = 70/237 (29%), Gaps = 79/237 (33%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKEL----------GP 50
ML + S L + V+ V + LP + ++ L GP
Sbjct: 338 ML--SI-------SNLTQEQVQDYVNK----TNSHLPAGKQVEIS--LVNGAKNLVVSGP 382
Query: 51 -------DVKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH 103
++ S D Q + + KL + ++ F H
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLD-QSRIPFSER---KLKFSNRFLPVASPF----------H 428
Query: 104 S------LDDFKRILLVNTVGTFNVARLSAQLIHENKLNEDG--LRGVIINTASIAAYEG 155
S D + L+ N V +FN + + DG LR + + +
Sbjct: 429 SHLLVPASDLINKDLVKNNV-SFNAKDIQIPVYD----TFDGSDLRVLSGSISERIVDCI 483
Query: 156 QSGQV------AYSASK---------SGIVGMTLPMARDLAGAGIRVNTIAPGLFDT 197
V + A+ SG+ +T R+ G G+RV I G D
Sbjct: 484 IRLPVKWETTTQFKATHILDFGPGGASGLGVLT---HRNKDGTGVRV--IVAGTLDI 535
Score = 34.6 bits (79), Expect = 0.035
Identities = 39/218 (17%), Positives = 64/218 (29%), Gaps = 94/218 (43%)
Query: 96 NYNKGTVHSLDD--------FKRILLVNTVGTFN--VARLS----AQLIHENKLNEDGLR 141
NY+ ++ D FK I +T TF LS Q
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ------------- 1733
Query: 142 GVIINTASIAAYE---------------GQS-GQVAYSA--SKSG---------IV---G 171
+ AA+E G S G+ Y+A S + +V G
Sbjct: 1734 -PALTLMEKAAFEDLKSKGLIPADATFAGHSLGE--YAALASLADVMSIESLVEVVFYRG 1790
Query: 172 MTLPMA--RDLAG------AGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGH 223
MT+ +A RD G I +A E ++ + R +R G
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ--------EALQYVVER---VGKRTG- 1838
Query: 224 PDEFAQLV-------QSIITNPLINGEVIRIDGALRMI 254
++V Q + G++ +D ++
Sbjct: 1839 --WLVEIVNYNVENQQYVAA-----GDLRALDTVTNVL 1869
Score = 30.4 bits (68), Expect = 0.65
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 11 GGASGLGKATVERIVREG-G-RVVLCDLPTSEGESVAKELG 49
GGASGLG T ++G G RV+ + + + + G
Sbjct: 507 GGASGLGVLTHR--NKDGTGVRVI---VAGTLDINPDDDYG 542
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 42.3 bits (100), Expect = 8e-05
Identities = 21/148 (14%), Positives = 39/148 (26%), Gaps = 36/148 (24%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDVQK 67
V G LG I G +VL P+S+ + +A + + ++ +++
Sbjct: 17 AVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLA---YLEPECRVAEMLDHAGLER 73
Query: 68 AVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFNVARLSA 127
A+ D + AG ++ + T
Sbjct: 74 ALRGL-------DGVIFSAGY------------YPSRPRRWQEEVASALGQTNPFYAACL 114
Query: 128 QLIHENKLNEDGLRGV--IINTASIAAY 153
Q V I+ S A
Sbjct: 115 Q------------ARVPRILYVGSAYAM 130
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding,
fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Length = 422
Score = 41.3 bits (96), Expect = 2e-04
Identities = 41/295 (13%), Positives = 80/295 (27%), Gaps = 53/295 (17%)
Query: 7 GLVTGGASGLGKAT-VERIVREGGRVVLCDLPTSEGES---------------VAKELGP 50
LV G +SG G A+ + G + S AK G
Sbjct: 64 VLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGL 123
Query: 51 DVKFAPVDVTSEEDVQKAVLLCKDSFG-KLDVNVNCAGISCAFKIFNYNKGTVHSLDDFK 109
K D S+ + + L K G ++D+ V S A + K
Sbjct: 124 YSKSINGDAFSDAARAQVIELIKTEMGGQVDLVVY----SLASPVRKLPGSGEVKRSALK 179
Query: 110 RILLVNTVGTFNVARLSAQLIHENKLNEDGL---------------------RGVIINTA 148
I T + + + + + GV+ + A
Sbjct: 180 PIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMGGQDWELWIDALEGAGVLADGA 239
Query: 149 SIAAYEGQSGQVAYSASKSGIVGM--------TLPMARDLAGAGIRVNTIAPGLFDTPLL 200
A+ ++ + G +G + LA G N T
Sbjct: 240 RSVAFSYIGTEITWPIYWHGALGKAKVDLDRTAQRLNARLAKHGGGANVAVLKSVVTQAS 299
Query: 201 SMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSIITNPL--INGEVIRIDGALRM 253
+ + + +++ + G + + + + L +G+ +D R+
Sbjct: 300 AAI-PVMPLYISMVYKIMKEKGLHEGTIEQLDRLFRERLYRQDGQPAEVDEQNRL 353
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 39.9 bits (94), Expect = 4e-04
Identities = 40/211 (18%), Positives = 71/211 (33%), Gaps = 42/211 (19%)
Query: 2 LKGVVGLVTGGAS------GLGKATVERIVREGGRVVLCDLPTSEGESV---AKELGPDV 52
L+ ++ G A+ G+ K + + G ++V + + ++L
Sbjct: 30 LENKTYVIMGIANKRSIAFGVAKV----LDQLGAKLVFTYRKERSRKELEKLLEQLNQPE 85
Query: 53 KF-APVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFK 109
+DV S+E+V G +D + AF +G S + F
Sbjct: 86 AHLYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSI----AFANMEDLRGRFSETSREGFL 141
Query: 110 RILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAA--YEGQSGQVA--Y--- 162
+++ VA + +L+ E SI A Y G Y
Sbjct: 142 LAQDISSYSLTIVAHEAKKLMPEG--------------GSIVATTYLG-GEFAVQNYNVM 186
Query: 163 SASKSGIVGMTLPMARDLAGAGIRVNTIAPG 193
+K+ + +A DL IRVN I+ G
Sbjct: 187 GVAKASLEANVKYLALDLGPDNIRVNAISAG 217
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis} PDB:
4eit_A*
Length = 293
Score = 39.5 bits (93), Expect = 5e-04
Identities = 48/209 (22%), Positives = 80/209 (38%), Gaps = 38/209 (18%)
Query: 1 MLKGVVGLVTGGAS------GLGKATVERIVREGGRVVLCDLPTSEGESV---AKELGPD 51
+L+G GL+ G A+ G+ KA G + + + V A+ELG
Sbjct: 28 LLQGKRGLILGVANNRSIAWGIAKA----AREAGAELAFTYQGDALKKRVEPLAEELGAF 83
Query: 52 VKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFK 109
V DV + + +GKLD V+ F + G S +F
Sbjct: 84 V-AGHCDVADAASIDAVFETLEKKWGKLDFLVHAI----GFSDKDELTGRYIDTSEANFT 138
Query: 110 RILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVA--Y---SA 164
+L++ V+R + +L+ + G I+ T + Y G + +V Y
Sbjct: 139 NTMLISVYSLTAVSRRAEKLMADG--------GSIL-TLT---YYG-AEKVMPNYNVMGV 185
Query: 165 SKSGIVGMTLPMARDLAGAGIRVNTIAPG 193
+K+ + +A DL IRVN I+ G
Sbjct: 186 AKAALEASVKYLAVDLGPQNIRVNAISAG 214
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase,
INHA, enoyl acyl carrier reductase, pyrrolid
carboxamide; HET: NAD 566; 1.62A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A*
2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A*
2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A*
3fnh_A* 3oew_A* 2aqh_A* ...
Length = 269
Score = 39.5 bits (93), Expect = 5e-04
Identities = 34/221 (15%), Positives = 70/221 (31%), Gaps = 60/221 (27%)
Query: 1 MLKGVVGLVTGGAS------GLGKATVERIVREGGRVVLCDLPTSEG-----ESVAKELG 49
+L G LV+G + + + +G ++VL T + + L
Sbjct: 4 LLDGKRILVSGIITDSSIAFHIARV----AQEQGAQLVL----TGFDRLRLIQRITDRLP 55
Query: 50 PDVKFAPVDVTSEEDVQKAVLLCKDSFG---KLDVNVNCAGIS--CAFKIFNYNKGTVHS 104
+DV +EE + ++ G KLD V+ G I +
Sbjct: 56 AKAPLLELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDA---P 112
Query: 105 LDDFKRILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSA 164
D + + ++ ++A+ +++ SI + +
Sbjct: 113 YADVSKGIHISAYSYASMAKALLPIMNPG--------------GSIVG-------MDFDP 151
Query: 165 SKS-------GIVGMTLP-----MARDLAGAGIRVNTIAPG 193
S++ + L +AR+ G+R N +A G
Sbjct: 152 SRAMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAG 192
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid
biosynthesis, oxidation reduction; 1.50A {Thermus
thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Length = 261
Score = 39.1 bits (92), Expect = 6e-04
Identities = 46/211 (21%), Positives = 71/211 (33%), Gaps = 42/211 (19%)
Query: 1 MLKGVVGLVTGGAS------GLGKATVERIVREGGRVVLCDLPTSEGESV---AKELGPD 51
L G LV G + + + G V L A+ LG
Sbjct: 5 DLSGKKALVMGVTNQRSLGFAIAAK----LKEAGAEVALSYQAERLRPEAEKLAEALGGA 60
Query: 52 VKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFK 109
+ DVT +E++ K++FG LD V+ AF +G D+
Sbjct: 61 L-LFRADVTQDEELDALFAGVKEAFGGLDYLVHAI----AFAPREAMEGRYIDTRRQDWL 115
Query: 110 RILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAA--YEGQSGQVA--Y--- 162
L V+ VAR + L+ E I Y S +V Y
Sbjct: 116 LALEVSAYSLVAVARRAEPLLREG--------------GGIVTLTYYA-SEKVVPKYNVM 160
Query: 163 SASKSGIVGMTLPMARDLAGAGIRVNTIAPG 193
+ +K+ + +A +L G+RVN I+ G
Sbjct: 161 AIAKAALEASVRYLAYELGPKGVRVNAISAG 191
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 39.9 bits (93), Expect = 6e-04
Identities = 25/169 (14%), Positives = 58/169 (34%), Gaps = 26/169 (15%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLC---DLPTSEG--ESVA--KELGPDVKFAPVDVT 60
++TGG G G + + G + ++ + V + G V + + +
Sbjct: 1888 VITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNAS 1947
Query: 61 SEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLD--DFKRILLVNTVG 118
S + + +++ G + N A + + + F+ + G
Sbjct: 1948 SLDGAR-SLITEATQLGPVGGVFNLAMVL--------RDAVLENQTPEFFQDVSKPKYSG 1998
Query: 119 TFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASKS 167
T N+ R++ + E + +S++ G +GQ Y + S
Sbjct: 1999 TANLDRVTREACPE--------LDYFVIFSSVSCGRGNAGQANYGFANS 2039
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI,
UW, decode, eonyl-(acyl-carrier-PR reductase, NAD,
oxidoreductase; HET: NAD; 1.80A {Anaplasma
phagocytophilum} PDB: 3k2e_A*
Length = 296
Score = 39.2 bits (92), Expect = 7e-04
Identities = 52/209 (24%), Positives = 84/209 (40%), Gaps = 38/209 (18%)
Query: 1 MLKGVVGLVTGGAS------GLGKATVERIVREGGRVVLCDLPTSEGESV---AKELGPD 51
+++G G++ G A+ G+ KA + +G V L L + + V A+ LG
Sbjct: 27 LMEGKKGVIIGVANDKSLAWGIAKA----VCAQGAEVALTYLSETFKKRVDPLAESLGVK 82
Query: 52 VKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDFK 109
+ P DV+ E V + + +G LD V+ AF N KG SL +F
Sbjct: 83 L-TVPCDVSDAESVDNMFKVLAEEWGSLDFVVHAV----AFSDKNELKGRYVDTSLGNFL 137
Query: 110 RILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVA--Y---SA 164
+ ++ +A + L+ G I+ T S Y G + +V Y
Sbjct: 138 TSMHISCYSFTYIASKAEPLMTNG--------GSIL-TLS---YYG-AEKVVPHYNVMGV 184
Query: 165 SKSGIVGMTLPMARDLAGAGIRVNTIAPG 193
K+ + +A DL IRVN I+ G
Sbjct: 185 CKAALEASVKYLAVDLGKQQIRVNAISAG 213
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 38.7 bits (91), Expect = 8e-04
Identities = 42/212 (19%), Positives = 75/212 (35%), Gaps = 42/212 (19%)
Query: 1 MLKGVVGLVTGGAS------GLGKATVERIVREGGRVVLCDLPTSEGESV---AKELGPD 51
L+G +V G A+ G+ ++ + G R++ +SV A L +
Sbjct: 4 SLEGRNIVVMGVANKRSIAWGIARS----LHEAGARLIFTYAGERLEKSVHELAGTLDRN 59
Query: 52 VKFA-PVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLDDF 108
P DVT++ +++ K+ G + +C AF G + D F
Sbjct: 60 DSIILPCDVTNDAEIETCFASIKEQVGVIHGIAHCI----AFANKEELVGEYLNTNRDGF 115
Query: 109 KRILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAA--YEGQSGQVA--Y-- 162
+++ V + + ++ E SI Y G V Y
Sbjct: 116 LLAHNISSYSLTAVVKAARPMMTEG--------------GSIVTLTYLG-GELVMPNYNV 160
Query: 163 -SASKSGIVGMTLPMARDLAGAGIRVNTIAPG 193
+K+ + +A DL IRVN+I+ G
Sbjct: 161 MGVAKASLDASVKYLAADLGKENIRVNSISAG 192
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase,
oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia
coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A*
1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A*
1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Length = 265
Score = 38.3 bits (90), Expect = 0.001
Identities = 42/210 (20%), Positives = 73/210 (34%), Gaps = 39/210 (18%)
Query: 1 MLKGVVGLVTGGAS------GLGKATVERIVREGGRVVLCDLPTSEGESV---AKELGPD 51
L G LVTG AS G+ +A + REG + V A +LG D
Sbjct: 6 FLSGKRILVTGVASKLSIAYGIAQA----MHREGAELAFTYQNDKLKGRVEEFAAQLGSD 61
Query: 52 VKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTV---HSLDDF 108
+ DV + + + K D V+ F + G + + F
Sbjct: 62 I-VLQCDVAEDASIDTMFAELGKVWPKFDGFVHSI----GFAPGDQLDGDYVNAVTREGF 116
Query: 109 KRILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVA--Y---S 163
K +++ +A+ +++ ++ T S Y G + + Y
Sbjct: 117 KIAHDISSYSFVAMAKACRSMLNPG--------SALL-TLS---YLG-AERAIPNYNVMG 163
Query: 164 ASKSGIVGMTLPMARDLAGAGIRVNTIAPG 193
+K+ + MA + G+RVN I+ G
Sbjct: 164 LAKASLEANVRYMANAMGPEGVRVNAISAG 193
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent
enoyl-ACP reductase, FABI, aquifex A VF5, structural
genomics, PSI; 2.00A {Aquifex aeolicus}
Length = 285
Score = 38.0 bits (89), Expect = 0.002
Identities = 50/213 (23%), Positives = 87/213 (40%), Gaps = 45/213 (21%)
Query: 1 MLKGVVGLVTGGAS------GLGKATVERIVREGGRVVLCDLPTSEGESV-------AKE 47
+L+G L+TG A+ G+ K+ REG ++ T + AK
Sbjct: 18 LLEGKRALITGVANERSIAYGIAKS----FHREGAQLAF----TYATPKLEKRVREIAKG 69
Query: 48 LGPDVKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SL 105
G D+ DV+ +ED++ ++++G LD+ V+ A+ KG V S
Sbjct: 70 FGSDL-VVKCDVSLDEDIKNLKKFLEENWGSLDIIVHSI----AYAPKEEFKGGVIDTSR 124
Query: 106 DDFKRILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVA--Y- 162
+ FK + ++ + R L + G I+ T S Y G + +V Y
Sbjct: 125 EGFKIAMDISVYSLIALTRELLPL-----MEGRN--GAIV-TLS---YYG-AEKVVPHYN 172
Query: 163 --SASKSGIVGMTLPMARDLAGAGIRVNTIAPG 193
+K+ + +A D+A G R+N I+ G
Sbjct: 173 VMGIAKAALESTVRYLAYDIAKHGHRINAISAG 205
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 37.8 bits (88), Expect = 0.002
Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 34/154 (22%)
Query: 8 LVTGGASGLGKATVERIVREGG-------RVVLCD-LPTSEGESVAKELGPDVKFAPVDV 59
+ G A +G+ +R+V++G + L D + V D+
Sbjct: 18 AIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFS----GAVDARAADL 73
Query: 60 TSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGT 119
++ + +K V + DV + A I + + DF + +N GT
Sbjct: 74 SAPGEAEKLV------EARPDVIFHLAAIV-----------SGEAELDFDKGYRINLDGT 116
Query: 120 FNVARLSAQLIHENKLNEDGLRGVIINTASIAAY 153
+ A I K DG + ++ T+SIA +
Sbjct: 117 RYL--FDAIRIANGK---DGYKPRVVFTSSIAVF 145
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid,
oxidoreductase, structural genomics; 1.90A {Burkholderia
pseudomallei 1710B}
Length = 271
Score = 37.6 bits (88), Expect = 0.002
Identities = 40/212 (18%), Positives = 74/212 (34%), Gaps = 43/212 (20%)
Query: 1 MLKGVVGLVTGGAS------GLGKATVERIVREGGRVVLCDLPTSEGESV---AKELGPD 51
L G L+TG S G+ KA REG + + + + A E G +
Sbjct: 11 FLDGKRILLTGLLSNRSIAYGIAKA----CKREGAELAFTYVGDRFKDRITEFAAEFGSE 66
Query: 52 VKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH---SLDDF 108
+ P DV + + K + LD V+ F G + ++F
Sbjct: 67 L-VFPCDVADDAQIDALFASLKTHWDSLDGLVHSI----GFAPREAIAGDFLDGLTRENF 121
Query: 109 KRILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAA--YEGQSGQVA--Y-- 162
+ ++ +A+ + ++ ++ AS+ Y G + + Y
Sbjct: 122 RIAHDISAYSFPALAKAALPMLSDD--------------ASLLTLSYLG-AERAIPNYNT 166
Query: 163 -SASKSGIVGMTLPMARDLAGAGIRVNTIAPG 193
+K+ + +A L G+RVN I+ G
Sbjct: 167 MGLAKAALEASVRYLAVSLGAKGVRVNAISAG 198
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 37.2 bits (87), Expect = 0.003
Identities = 45/214 (21%), Positives = 75/214 (35%), Gaps = 50/214 (23%)
Query: 2 LKGVVGLVTGGAS------GLGKATVERIVREGGRVVLCDLPTSEGESV-------AKEL 48
LKG GL+ G A+ G+ ++ +G + T ES+ A+EL
Sbjct: 4 LKGKKGLIVGVANNKSIAYGIAQS----CFNQGATLAF----TYLNESLEKRVRPIAQEL 55
Query: 49 GPDVKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH--SLD 106
+DV+ EE + K G LD V+ AF +G++ S
Sbjct: 56 NSPY-VYELDVSKEEHFKSLYNSVKKDLGSLDFIVHSV----AFAPKEALEGSLLETSKS 110
Query: 107 DFKRILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAA--YEGQSGQVA--Y 162
F + ++ + L++ AS+ Y G S + Y
Sbjct: 111 AFNTAMEISVYSLIELTNTLKPLLNNG--------------ASVLTLSYLG-STKYMAHY 155
Query: 163 ---SASKSGIVGMTLPMARDLAGAGIRVNTIAPG 193
+K+ + +A DL IRVN ++ G
Sbjct: 156 NVMGLAKAALESAVRYLAVDLGKHHIRVNALSAG 189
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 37.4 bits (87), Expect = 0.003
Identities = 17/119 (14%), Positives = 36/119 (30%), Gaps = 19/119 (15%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCD-LPTSEGESVAKELGPDVKFAPVDVTSEEDVQ 66
L+ G +G +RI+ V + T + K + F D+T ++
Sbjct: 28 LILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKH--ERMHFFEGDITINKEWV 85
Query: 67 KAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFNVARL 125
+ + K DV + I+ + R+ ++ + R
Sbjct: 86 EYHV------KKCDVILPLVAIA----------TPATYVKQPLRVFELDFEANLPIVRS 128
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase,
structural genomics, STRU genomics consortium, SGC,
lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP:
c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 37.0 bits (86), Expect = 0.004
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 24/120 (20%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCD-LPTSEGESVAKELG-PDVKFAPVDVTSEEDV 65
L+TGGA +G ++++ +G V + D T +V +G + + DV +
Sbjct: 31 LITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYI 90
Query: 66 QKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFNVARL 125
++D + A NY + +L NT+GT N+ L
Sbjct: 91 ------------EVDQIYHLA---SPASPPNYMYNPIKTLK-------TNTIGTLNMLGL 128
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 37.0 bits (86), Expect = 0.004
Identities = 48/253 (18%), Positives = 83/253 (32%), Gaps = 61/253 (24%)
Query: 8 LVTGGASGLGKATVERIVREGG--RVVLC---DLPTSEGESVAKEL---GPDVKFAPVDV 59
LVTGG LG +V E G +VL S + +L G +V DV
Sbjct: 534 LVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDV 593
Query: 60 TSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH-------------SLD 106
E + K + A I + VH +++
Sbjct: 594 ADRETLAKVL----------------ASIPDEHPL----TAVVHAAGVLDDGVSESLTVE 633
Query: 107 DFKRILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASK 166
++L G N+ L + ++ +S++ G GQ Y+A+
Sbjct: 634 RLDQVLRPKVDGARNLLELIDPDVA------------LVLFSSVSGVLGSGGQGNYAAAN 681
Query: 167 SGIVGMTLPMARDLAGAGIRVNTIAPGLF-DTPLLSMLNEKVRNFLARSIPAPQRLGHPD 225
S + +A+ G+ ++A G + + + S L E ++ LARS P +
Sbjct: 682 SFLDA----LAQQRQSRGLPTRSLAWGPWAEHGMASTLREAEQDRLARSGLLPIS---TE 734
Query: 226 EFAQLVQSIITNP 238
E +
Sbjct: 735 EGLSQFDAACGGA 747
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 36.6 bits (85), Expect = 0.007
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 8 LVTGGASGLGKATVERIVREG-GRVVLCDL--PTSEG--ESVA--KELGPDVKFAPVDVT 60
LVTGG G+G + R G ++L P ++G E VA + LG A DVT
Sbjct: 230 LVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVT 289
Query: 61 SEEDVQKAV 69
E V++ +
Sbjct: 290 DRESVRELL 298
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty
acid biosynthesis II, short-chain dehydrogenase
reductase superfamily; HET: NAI; 1.80A {Yersinia pestis}
PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Length = 405
Score = 36.2 bits (83), Expect = 0.007
Identities = 36/243 (14%), Positives = 62/243 (25%), Gaps = 50/243 (20%)
Query: 7 GLVTGGASGLGKATV----------------ERIVREGGRVVLCDLPTSEGESVAKELGP 50
LV G ++G G A ER EG ++ A + G
Sbjct: 50 VLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGL 109
Query: 51 DVKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKR 110
K D S+E Q + K G++D + S A + K K
Sbjct: 110 YAKSINGDAFSDEIKQLTIDAIKQDLGQVDQVIY----SLASPRRTHPKTGEVFNSALKP 165
Query: 111 ILLVNTVGTFNVARLSAQLIHENKLNED---------------------GLRGVIINTAS 149
I + + + + + GV+ A
Sbjct: 166 IGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMGGEDWQMWIDALLDAGVLAEGAQ 225
Query: 150 IAAYEGQSGQVAYSASKSGIVGM--------TLPMARDLAGA-GIRVNTIAPGLFDTPLL 200
A+ ++ + +G +G L + LA G +
Sbjct: 226 TTAFTYLGEKITHDIYWNGSIGAAKKDLDQKVLAIRESLAAHGGGDARVSVLKAVVSQAS 285
Query: 201 SML 203
S +
Sbjct: 286 SAI 288
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH
BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella
tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 36.0 bits (84), Expect = 0.008
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 21/99 (21%)
Query: 1 MLKGVVGLVTGGAS------GLGKATVERIVREGGRVVLCDLPTSEGE------SVAKEL 48
L G L+TG S G+ KA + REG + T G+ + E
Sbjct: 23 FLAGKKILITGLLSNKSIAYGIAKA----MHREGAELAF----TYVGQFKDRVEKLCAEF 74
Query: 49 GPDVKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAG 87
P P DV S+++++ + + LD V+
Sbjct: 75 NPAA-VLPCDVISDQEIKDLFVELGKVWDGLDAIVHSIA 112
Score = 31.0 bits (71), Expect = 0.26
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 176 MARDLAGAGIRVNTIAPG 193
A L GI+VN ++ G
Sbjct: 193 TALALGEDGIKVNAVSAG 210
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 35.7 bits (83), Expect = 0.009
Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 27/124 (21%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCD---------LPTSEGESVAKELGPDVKFAPVD 58
L+TG A +G +E +++ +VV D L K+ + KF D
Sbjct: 31 LITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQ-WSNFKFIQGD 89
Query: 59 VTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVG 118
+ + +D A +D ++ A + S++D N G
Sbjct: 90 IRNLDDCNNA-------CAGVDYVLHQAALG----------SVPRSINDPITSNATNIDG 132
Query: 119 TFNV 122
N+
Sbjct: 133 FLNM 136
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 35.6 bits (83), Expect = 0.010
Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 28/115 (24%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDVQK 67
VTGG LG+ VE I +G ++ D ++ D T E+
Sbjct: 6 AVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAI------NDYEYRVSDYTLED---- 55
Query: 68 AVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFNV 122
+ +D V+ A G+ + +F N + T N+
Sbjct: 56 ----LINQLNDVDAVVHLAATR----------GSQGKISEFH----DNEILTQNL 92
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 35.7 bits (83), Expect = 0.011
Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 27/124 (21%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCD---------LPTSEGESVAKELGPDVKFAPVD 58
L+TG A +G +E++++ V+ D L + V+ E F D
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVK-TLVSTEQWSRFCFIEGD 87
Query: 59 VTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVG 118
+ ++ +D ++ A + S+ D N G
Sbjct: 88 IRDLTTCEQV-------MKGVDHVLHQAALG----------SVPRSIVDPITTNATNITG 130
Query: 119 TFNV 122
N+
Sbjct: 131 FLNI 134
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 35.6 bits (82), Expect = 0.012
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 8 LVTGGASGLGKATVERIVREG-GRVVLC--DLPTSEG--ESVA--KELGPDVKFAPVDVT 60
L+TGG +G+ R+ EG R+VL P + G E + G +V A DV
Sbjct: 263 LITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVA 322
Query: 61 SEEDV 65
+ +
Sbjct: 323 ERDAL 327
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 35.1 bits (81), Expect = 0.017
Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 19/119 (15%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELG-PDVKFAPVDVTSEEDVQ 66
L+ G +G ER++RE V S+ +++ L P F D++ +
Sbjct: 4 LILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA--ISRFLNHPHFHFVEGDISIHSEWI 61
Query: 67 KAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFNVARL 125
+ + K DV + Y + + + ++ + R
Sbjct: 62 EYHV------KKCDVVLPLV---AIATPIEYTRNPLRVFE-------LDFEENLRIIRY 104
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 35.1 bits (81), Expect = 0.018
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 8 LVTGGASGLGKATVERIVREG-GRVVLCDL--PTSEG--ESVA--KELGPDVKFAPVDVT 60
LVTGG G+G R+ +G +VL + G E A ++LG V A D
Sbjct: 243 LVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAA 302
Query: 61 SEEDVQKAV 69
E + +
Sbjct: 303 DREALAALL 311
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 34.4 bits (79), Expect = 0.029
Identities = 30/177 (16%), Positives = 56/177 (31%), Gaps = 34/177 (19%)
Query: 8 LVTGGASGLGKATVERIVREGGR-VVL-----------CDLPTSEGESVAK------ELG 49
LVTG R+ R+G ++L +E +A +LG
Sbjct: 255 LVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLG 314
Query: 50 PDVKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLD--D 107
D+T E +L L ++ + + + D
Sbjct: 315 ATATVVTCDLTDAEAAA-RLLAGVSDAHPLSAVLHLPPTV--------DSEPLAATDADA 365
Query: 108 FKRILLVNTVGTFNVARLSAQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSA 164
R++ ++ RL + +++ +S+AA G +GQ AY+A
Sbjct: 366 LARVVTAKATAALHLDRLLREA----AAAGGRPPVLVL-FSSVAAIWGGAGQGAYAA 417
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 34.1 bits (79), Expect = 0.033
Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 24/121 (19%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCDLPTSEG--ESVAK-ELGPDVKFAPVDVTSEED 64
L+TGG LG + +G +++ D + +G +++ + +F D+ ++ D
Sbjct: 5 LITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKND 64
Query: 65 VQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH---SLDDFKRILLVNTVGTFN 121
V + L+ K D + AG S+D+ +N GT N
Sbjct: 65 VTR--LITKYMP---DSCFHLAGQV-------------AMTTSIDNPCMDFEINVGGTLN 106
Query: 122 V 122
+
Sbjct: 107 L 107
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 34.1 bits (79), Expect = 0.034
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCD-LPTSEGESVAKELGPDVKFAPVDVTSEEDVQ 66
+TG +G E ++ G +VV D T E + P++ F + V
Sbjct: 25 FITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKD--HPNLTFVEGSIADHALVN 82
Query: 67 KAV 69
+ +
Sbjct: 83 QLI 85
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 33.3 bits (77), Expect = 0.060
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 8 LVTGGASGLGKATVERIVREGGRV-VLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDVQ 66
LVTGGA +G VE ++ G V VL +L T + E+V V F VD+ +E V+
Sbjct: 4 LVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVP----KGVPFFRVDLRDKEGVE 59
Query: 67 KAV 69
+A
Sbjct: 60 RAF 62
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin
C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana}
SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 33.1 bits (76), Expect = 0.071
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDVQK 67
+TG + R+ EG V+ D + E + +++ D +F VD+ E+ K
Sbjct: 33 SITGAGGFIASHIARRLKHEGHYVIASD--WKKNEHMTEDMFCD-EFHLVDLRVMENCLK 89
Query: 68 AV 69
Sbjct: 90 VT 91
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 33.0 bits (75), Expect = 0.088
Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 8 LVTGGASGLGKATVERIVREGGRV-VLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDVQ 66
L+ GG +G V+ ++ G V +S+ + + ++ E +
Sbjct: 15 LIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLV 74
Query: 67 KAV 69
+ +
Sbjct: 75 ELM 77
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 32.6 bits (74), Expect = 0.089
Identities = 7/68 (10%), Positives = 19/68 (27%), Gaps = 6/68 (8%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVL------CDLPTSEGESVAKELGPDVKFAPVDVTS 61
L+ G +G+ + + G L + + + + +
Sbjct: 8 LLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDD 67
Query: 62 EEDVQKAV 69
+ +AV
Sbjct: 68 HASLVEAV 75
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 32.2 bits (73), Expect = 0.14
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 9/69 (13%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLC-------DLPTSEGESVAKELGPDVKFAPVDVT 60
L+ GG +GK V + G + ++ + K+LG K +
Sbjct: 8 LIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLG--AKLIEASLD 65
Query: 61 SEEDVQKAV 69
+ + A+
Sbjct: 66 DHQRLVDAL 74
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella
bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 31.8 bits (73), Expect = 0.16
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCD-LPTSEGESVAKELGPDVKFAPVDVTSEEDVQ 66
L+TGGA LG +E + +G +++ D T + E + G + VT ++
Sbjct: 24 LITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAG--LSVIEGSVTDAGLLE 81
Query: 67 KA 68
+A
Sbjct: 82 RA 83
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 32.0 bits (72), Expect = 0.18
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Query: 6 VGLVTGGASGLGKATVERIVREGGRVVLCD-LPTSEGESVAKELGPDVKFAPVDVTSEED 64
V L+ G +G + E + + A + + D++ +D
Sbjct: 3 VALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPDD 62
Query: 65 VQKAVLLCKD 74
Q + D
Sbjct: 63 SQAKLSPLTD 72
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 31.9 bits (73), Expect = 0.18
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 8/83 (9%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLC---DLPTSEGESVAKELGPDVKFAPVDVTSEED 64
+ SG+G+A ++ G R + + K LG + V E
Sbjct: 172 IQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEH----VITEEELR 227
Query: 65 VQKAVLLCKDSFGKLDVNVNCAG 87
+ KD + +NC G
Sbjct: 228 RPEMKNFFKDMPQ-PRLALNCVG 249
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 31.5 bits (72), Expect = 0.25
Identities = 21/148 (14%), Positives = 46/148 (31%), Gaps = 33/148 (22%)
Query: 8 LVTGGASGLGKATVERIVREGGR--VVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDV 65
L+ G +G +++ + G V+ D+ + V F V+ +
Sbjct: 6 LIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVV-----NSGPFEVVNALDFNQI 60
Query: 66 QKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFNVARL 125
+ V + K+ A + + + + +N F+V L
Sbjct: 61 EHLVEVH-----KITDIYLMAAL-----------LSATAEKNPAFAWDLNMNSLFHVLNL 104
Query: 126 SAQLIHENKLNEDGLRGVIINTASIAAY 153
+ K+ + I +SIA +
Sbjct: 105 AK----AKKIKK------IFWPSSIAVF 122
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 31.0 bits (70), Expect = 0.31
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 8 LVTGGASGLGKATVERIVREGGRVV-------LCDLPTSEGESVAKELGPDVKFAPVDVT 60
L+ G +G+ V ++ G P ++ E + V D+
Sbjct: 6 LILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDIN 65
Query: 61 SEEDVQKAV 69
E + KA+
Sbjct: 66 DHETLVKAI 74
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 31.0 bits (71), Expect = 0.34
Identities = 27/116 (23%), Positives = 39/116 (33%), Gaps = 24/116 (20%)
Query: 8 LVTGGASGLGKATVERIVREGGRV-VLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDVQ 66
+VTGGA +G V+++V G V V+ +L + E V P + D+
Sbjct: 4 VVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVN----PSAELHVRDLKDYSWGA 59
Query: 67 KAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFNV 122
K DV + A S + N V TFNV
Sbjct: 60 GI---------KGDVVFHFAANP----------EVRLSTTEPIVHFNENVVATFNV 96
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 30.8 bits (69), Expect = 0.41
Identities = 8/68 (11%), Positives = 19/68 (27%), Gaps = 8/68 (11%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPD------VKFAPVDVTS 61
L+ G +G+ + + L S +K +
Sbjct: 14 LIAGATGFIGQFVATASLDAHRPTYI--LARPGPRSPSKAKIFKALEDKGAIIVYGLINE 71
Query: 62 EEDVQKAV 69
+E ++K +
Sbjct: 72 QEAMEKIL 79
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 30.4 bits (69), Expect = 0.43
Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 16/119 (13%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDVQK 67
+ G G T+ + V+ G V + + + E DV DV K
Sbjct: 7 AIFGATGQTGLTTLAQAVQAGYEVTVL---VRDSSRLPSEGPRPAHVVVGDVLQAADVDK 63
Query: 68 AVLLCKDSFGKLDVNVNCAGISCAFKIFN-YNKGTVHSLD-----DFKRILLVNTVGTF 120
V D + G ++G + + +++ +
Sbjct: 64 TV---AGQ----DAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLL 115
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 30.3 bits (69), Expect = 0.56
Identities = 18/124 (14%), Positives = 39/124 (31%), Gaps = 23/124 (18%)
Query: 8 LVTGGASGL-GKATVERIVREGGR--VVLCDLPTSEGESVAKELGPDVKFAPVDVTSEED 64
+VTGGA G G V+ + +G +V+ +L +L D +
Sbjct: 50 IVTGGA-GFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQ-- 106
Query: 65 VQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFNVAR 124
++ + FG ++ + S T + ++ N + +
Sbjct: 107 -----IMAGEEFGDVEAIFHEGACS----------STTEWDGKY--MMDNNYQYSKELLH 149
Query: 125 LSAQ 128
+
Sbjct: 150 YCLE 153
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 30.1 bits (68), Expect = 0.87
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCD-LPTSEGESVA--KEL-GPDVKFAPVDVTSEE 63
LVTGGA +G TV ++ G V+ D L S +SVA + L + F VD+ +
Sbjct: 15 LVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRK 74
Query: 64 DVQK 67
++K
Sbjct: 75 GLEK 78
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 29.5 bits (66), Expect = 0.95
Identities = 27/160 (16%), Positives = 43/160 (26%), Gaps = 57/160 (35%)
Query: 8 LVTGGASG-LGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDVQ 66
++TG G +GK + + T EE+++
Sbjct: 4 VITGAK-GFVGKNLKADLTSTTDHHIFEV---------------------HRQTKEEELE 41
Query: 67 KAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFNVARLS 126
A+L K D V+ AG V+ + K L N +V L
Sbjct: 42 SALL-------KADFIVHLAG--------------VNRPEHDKEFSLGNVSYLDHV--LD 78
Query: 127 AQLIHENKLNEDGLRGVIINTASIAAYEGQSGQVAYSASK 166
+ K I +S + Y SK
Sbjct: 79 ILTRNTKK--------PAILLSSSIQATQDN---PYGESK 107
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP;
1.80A {Clarkia breweri}
Length = 321
Score = 29.5 bits (66), Expect = 0.98
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 6/68 (8%)
Query: 8 LVTGGASGLGKATVERIVREG------GRVVLCDLPTSEGESVAKELGPDVKFAPVDVTS 61
++ GG +GK V + R + D S + + V ++
Sbjct: 8 IIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEE 67
Query: 62 EEDVQKAV 69
E + +
Sbjct: 68 HEKMVSVL 75
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 29.7 bits (67), Expect = 0.99
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCD 35
+V GG G AT + ++ V + D
Sbjct: 15 MVIGGDGYCGWATALHLSKKNYEVCIVD 42
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 29.5 bits (67), Expect = 1.2
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 44 VAKELGPDVKFAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCAG 87
AKE+ P+V V+ S E+ K ++ V + C G
Sbjct: 219 FAKEICPEVVTHKVERLSAEESAKKIVESFGGIE-PAVALECTG 261
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose
metabolism, isomerase, NAD, spine; HET: NAD; 2.7A
{Bacillus anthracis}
Length = 330
Score = 29.3 bits (67), Expect = 1.3
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCD-LPTSEGESVAKELGPDVKFAPVDVTSEEDVQ 66
L+ GGA +G V+++V EG VV+ D L T +++ + KF D+ + ++
Sbjct: 5 LICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITE----GAKFYNGDLRDKAFLR 60
Query: 67 K 67
Sbjct: 61 D 61
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 29.1 bits (66), Expect = 1.3
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDVQK 67
++T GAS L K + EG R ++ + E ++ K++G V D +
Sbjct: 169 VMTAGASQLCKLIIGLAKEEGFRPIVT-VRRDEQIALLKDIGAAH----VLNEKAPDFEA 223
Query: 68 AVL 70
+
Sbjct: 224 TLR 226
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 28.0 bits (63), Expect = 1.5
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 42 ESVAKEL-GPDVKFAPVDVTSEEDV 65
ES A+ +V A VDVT + +
Sbjct: 45 ESFAEWGEDLEVNIAKVDVTEQPGL 69
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 28.7 bits (65), Expect = 1.7
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDV 52
LV G A G+G A ++ G +V+ + + K +G D+
Sbjct: 164 LVLGAAGGIGTAAIQIAKGMGAKVIAV-VNRTAATEFVKSVGADI 207
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase,
galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A*
1i3l_A* 1i3m_A* 1i3n_A*
Length = 348
Score = 28.6 bits (65), Expect = 1.7
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCD-------LPTSEGES---VAKELGPDVKFAPV 57
LVTGGA +G TV ++ G V+ D S ES V + G V+F +
Sbjct: 6 LVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEM 65
Query: 58 DVTSEEDVQK 67
D+ + +Q+
Sbjct: 66 DILDQGALQR 75
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding
protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP:
a.22.1.2
Length = 154
Score = 28.2 bits (62), Expect = 1.8
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 16 LGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSE--------EDVQK 67
G+ATV RI++ G + ++ + E EDV+K
Sbjct: 83 FGRATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEK 142
Query: 68 AV 69
A+
Sbjct: 143 AI 144
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD;
1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A*
1ket_A* 1kep_A*
Length = 348
Score = 28.7 bits (65), Expect = 1.8
Identities = 30/121 (24%), Positives = 43/121 (35%), Gaps = 27/121 (22%)
Query: 8 LVTGGASGLGKATVERIVRE--GGRVVLCDLPTSEG--ESVAKELGPDVKFAPVDVTSEE 63
+VTGGA +G V + V + D T G ++ LG V+ D+ E
Sbjct: 8 IVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAE 67
Query: 64 DVQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVH---SLDDFKRILLVNTVGTF 120
V K K D V+ A S H SL+D + N +GT+
Sbjct: 68 LVDKL-------AAKADAIVHYAAES-------------HNDNSLNDPSPFIHTNFIGTY 107
Query: 121 N 121
Sbjct: 108 T 108
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 29.0 bits (64), Expect = 2.0
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 42 ESVAKELGPDVKFAPVDVTSEEDV 65
+ L +K +D T E +
Sbjct: 478 RKASTLLYGQLKVGTLDCTIHEGL 501
Score = 28.6 bits (63), Expect = 2.5
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 42 ESVAKELGPDVKFAPVDVTSEEDV 65
E +A+ + V+ VD +
Sbjct: 698 ELLARMIKGKVRAGKVDCQAYPQT 721
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2,
protein structure in midwest center for structural
genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella
typhimurium}
Length = 357
Score = 28.4 bits (64), Expect = 2.0
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVR--EGGRVV-LCDLPTSEGESVAKELGPDVKFA-- 55
LK G+V G +G + R+ G VV +CD+ ++ + + K
Sbjct: 23 TLK--AGIV--GIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYND 78
Query: 56 PVDVTSEEDVQKAVLLC 72
D+ +++DV+ V++
Sbjct: 79 YHDLINDKDVE-VVIIT 94
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 28.3 bits (64), Expect = 2.0
Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 23/124 (18%)
Query: 8 LVTGGASGL-GKATVERIVREGGRVVLC--DLPTSEGESVAKELGPDVKFAPVDVTSEED 64
+VTGGA G G V+ + +G +L +L V D +ED
Sbjct: 3 IVTGGA-GFIGSNIVKALNDKGITDILVVDNLKDGTKFVN------LVDLNIADYMDKED 55
Query: 65 VQKAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFNVAR 124
++ + FG ++ + S T + ++ N + +
Sbjct: 56 FLIQ-IMAGEEFGDVEAIFHEGACS----------STTEWDGKY--MMDNNYQYSKELLH 102
Query: 125 LSAQ 128
+
Sbjct: 103 YCLE 106
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ));
histidine kinase, osmosensor, His-Asp phosphorelay
system, signal transduction; HET: ANP; NMR {Escherichia
coli BL21} SCOP: d.122.1.3
Length = 161
Score = 27.6 bits (62), Expect = 2.9
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 10 TGGASGLGKATVERIVRE-GGRVVLCDLP 37
G +GLG A V+RIV G + L
Sbjct: 110 ISG-TGLGLAIVQRIVDNHNGMLELGTSE 137
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for
structural genomics; HET: MSE; 1.50A {Streptococcus
agalactiae}
Length = 451
Score = 28.3 bits (64), Expect = 3.0
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 5 VVGLVTGGASGLGKATVERIVREGGRVVLCDL-PTSEGESVAKELGPDVKF 54
V+GL SG A + + G V + D P E + L +K
Sbjct: 14 VLGL---ARSGE--AAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKV 59
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 27.9 bits (63), Expect = 3.0
Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 24/116 (20%)
Query: 8 LVTGGASGLGKATVERIVREGGRV-VLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDVQ 66
+VTGGA +G V+++ E + V+ +L + E V + D+ +++
Sbjct: 5 VVTGGAGFIGSHVVDKLS-ESNEIVVIDNLSSGNEEFVN----EAARLVKADLAADD--- 56
Query: 67 KAVLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKRILLVNTVGTFNV 122
KD + + A ++ I N + T+ +
Sbjct: 57 -----IKDYLKGAEEVWHIAANP----------DVRIGAENPDEIYRNNVLATYRL 97
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 28.0 bits (63), Expect = 3.1
Identities = 9/20 (45%), Positives = 9/20 (45%), Gaps = 2/20 (10%)
Query: 168 GIVGMTLPMARDLAGAGIRV 187
GI G L A L G RV
Sbjct: 15 GIGGAML--AYLLGRQGHRV 32
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 28.0 bits (62), Expect = 3.5
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDVQK 67
+ T AS LG+ + +++G ++V + E + K G V + +
Sbjct: 176 VHTAAASNLGQMLNQICLKDGIKLV-NIVRKQEQADLLKAQGAVH----VCNAASPTFMQ 230
Query: 68 AV 69
+
Sbjct: 231 DL 232
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 27.9 bits (63), Expect = 3.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCD 35
L+TGGA +G +V G V + D
Sbjct: 11 LITGGAGFIGGHLARALVASGEEVTVLD 38
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 27.7 bits (62), Expect = 3.7
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 18 KATVERIVREGGRVVLCD 35
+ V I E +V D
Sbjct: 209 RKEVVEINIEEKKVYTRD 226
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 27.9 bits (61), Expect = 3.7
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 42 ESVAKELGPDVKFAPVDVTSEEDVQK 67
E+ A L V A VD T+ +
Sbjct: 44 EAAATRLKGIVPLAKVDCTANTNTCN 69
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.04A {Thermotoga
maritima}
Length = 344
Score = 27.6 bits (62), Expect = 3.8
Identities = 14/75 (18%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVR-EGGRVV-LCDLPTSEGESVAKELGPDVKFA-PV 57
L+ +G++ G +G E + + + + D+ + ++LG + + P
Sbjct: 2 SLR--IGVI--GLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPH 57
Query: 58 DVTSEEDVQKAVLLC 72
++ + +V AVL+C
Sbjct: 58 ELIEDPNVD-AVLVC 71
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 27.0 bits (60), Expect = 3.9
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 42 ESVAKELGPDVKFAPVDVTSEEDV 65
+ A L VK V+ + +
Sbjct: 58 KKAATALKDVVKVGAVNADKHQSL 81
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 26.9 bits (60), Expect = 4.0
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 42 ESVAKEL---GPDVKFAPVDVTSEEDV 65
A +L G +++ A VD T E D+
Sbjct: 47 AKAAGKLKAEGSEIRLAKVDATEESDL 73
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG;
1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A*
1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A*
2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A*
1a9y_A*
Length = 338
Score = 27.4 bits (62), Expect = 4.1
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCD-LPTSEGESVA--KEL-GPDVKFAPVDVTSEE 63
LVTGG+ +G T ++++ G V++ D L S+ + + L G F D+ +E
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEA 63
Query: 64 DVQK 67
+ +
Sbjct: 64 LMTE 67
>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu
P.falciparum; HET: NAD FT1; 1.96A {Plasmodium
falciparum} PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A*
3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A*
2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A*
2foi_A* ...
Length = 329
Score = 27.6 bits (61), Expect = 4.3
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 176 MARDL-AGAGIRVNTIAPG 193
+A L IR+NTI+ G
Sbjct: 200 LAYHLGRNYNIRINTISAG 218
>1xq6_A Unknown protein; structural genomics, protein structure
initiative, CESG, AT5G02240, NADP, center for
eukaryotic structural genomics; HET: NAP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A*
2q46_A* 2q4b_A*
Length = 253
Score = 27.5 bits (61), Expect = 4.5
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDVQK 67
LVTG + G+ +++ + V L S +++G + D+T + +
Sbjct: 8 LVTGASGRTGQIVYKKLKEGSDKFVAKGLVRS--AQGKEKIGGEADVFIGDITDADSINP 65
Query: 68 AV 69
A
Sbjct: 66 AF 67
>3b59_A Glyoxalase/bleomycin resistance protein/dioxygena; 11004Z, NYSGXRC,
PSI-2, structural genomics, Pro structure initiative;
2.53A {Novosphingobium aromaticivorans}
Length = 310
Score = 27.5 bits (61), Expect = 4.6
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 137 EDGLRGVIINTASIAAYEGQSGQVAYSASKSGIVGMTLPMARDLAGAGIRVNTIAPGLFD 196
E+ + + + S + + + S +G + P G G +P
Sbjct: 62 ENRIDVIALAADSRSDVD----ALRASVEAAGCKVASEPAVLATPGGGYGFRFFSPDGLL 117
Query: 197 TPLLSMLNEKVRNFLARSIPAPQRLGH 223
+ S + + + LAR P ++ H
Sbjct: 118 FEVSSDVAKGAKRDLARWEGVPVKISH 144
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol
dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE;
1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A*
3nto_A* 3ntq_A* 3ntr_A*
Length = 344
Score = 27.3 bits (61), Expect = 5.3
Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 1 MLKGVVGLVTGGASGLGKATVERIVREGGRVVL---CDLPTSEGESVAKELGPDVKFA-- 55
L+ +G++ G +GK + RI + + D+ + V ++ +
Sbjct: 2 SLR--IGVI--GTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPN 57
Query: 56 PVDVTSEEDVQKAVLLC 72
+ ++E+V AVL+
Sbjct: 58 DDSLLADENVD-AVLVT 73
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 26.9 bits (60), Expect = 5.9
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDVQK 67
++TG LG + + + E V + V +D ++E + +
Sbjct: 4 MLTGATGHLGTHITNQAIANHIDHFH--IGVRNVEKVPDDWRGKVSVRQLDYFNQESMVE 61
Query: 68 A 68
A
Sbjct: 62 A 62
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 114
Score = 26.2 bits (58), Expect = 6.2
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 54 FAPVDVTSEEDVQKAVLLCKDSFGKLDVNVNCA 86
A V +E+D +K+ L + + V+
Sbjct: 59 QALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91
>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural
genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A
{Campylobacter jejuni subsp}
Length = 403
Score = 27.1 bits (61), Expect = 6.4
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 14/62 (22%)
Query: 20 TVERIVREGGRVVLCD-L--PTSEGES-----VAKEL----GPDVKFAPVDVTSEEDVQK 67
T+ + G V+L L P VAK L ++ A DV E+ +
Sbjct: 48 TIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAK-DVIGED-AKT 105
Query: 68 AV 69
Sbjct: 106 KA 107
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 26.7 bits (60), Expect = 6.5
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDV 52
LV A LG A V+ G RV+ E ++ LG +
Sbjct: 130 LVQAAAGALGTAAVQVARAMGLRVLAA-ASRPEKLALPLALGAEE 173
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA
NAD-binding rossmann fold, structural genomics; HET:
NAD; 2.40A {Lactobacillus plantarum WCFS1}
Length = 346
Score = 26.9 bits (60), Expect = 6.7
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 6 VGLVTGGASGLGKATVERIVR--EGGRVV-LCDLPTSEGESVAKELGPDVKFA-PVDVTS 61
++ G LG+ +V +G ++V C L +++ E ELG + + D+
Sbjct: 11 AAII--GLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMID 68
Query: 62 EEDVQKAVLLC 72
E++ A+ +
Sbjct: 69 TENID-AIFIV 78
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability,
crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga
maritima} SCOP: c.86.1.1
Length = 398
Score = 27.1 bits (61), Expect = 6.8
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 20 TVERIVREGGRVVLC---DLPTSEGES------VAKEL----GPDVKFAPVDVTSEEDVQ 66
T++ + +G +V+L P E VAK L G +VKF P V +E V+
Sbjct: 42 TIKYALEQGAKVILLSHLGRPKGEPSPEFSLAPVAKRLSELLGKEVKFVP-AVVGDE-VK 99
Query: 67 KAV 69
KAV
Sbjct: 100 KAV 102
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for
infectious disease, ssgcid, isomerase, NAD; HET: NAD
GUD; 1.90A {Burkholderia pseudomallei 1710B}
Length = 341
Score = 27.0 bits (61), Expect = 6.8
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCD-LPTSEGESVA--KEL-GPDVKFAPVDVTSEE 63
LVTGGA +G T ++ G VV+ D L S+ E++A +++ G F DV+ E
Sbjct: 9 LVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDER 68
Query: 64 DVQK 67
+ +
Sbjct: 69 ALAR 72
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus
stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A*
Length = 394
Score = 26.7 bits (60), Expect = 7.5
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 15/63 (23%)
Query: 20 TVERIVREGGRVVLC---DLPTSEGES------VAKEL----GPDVKFAPVDVTSEEDVQ 66
T+ ++ G +V+L P + VAK L V + +E V+
Sbjct: 43 TIRYLIEHGAKVILASHLGRPKGKVVEELRLDAVAKRLGELLERPVAKTN-EAVGDE-VK 100
Query: 67 KAV 69
AV
Sbjct: 101 AAV 103
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A
{Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Length = 397
Score = 26.9 bits (60), Expect = 7.5
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 8 LVTGGASGLGKATVERIVREGGR--VVLCDLPTSEGESVAKELGPDVKFAPVDVTSEE 63
LV GGA +G V ++R+ V++ L + G+S E +V +
Sbjct: 6 LVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63
>2g09_A Cytosolic 5'-nucleotidase III; uniprot Q9D020, UMPH-1, pyrim
nucleotidase 1, P5N-1, NT5C3 protein, AAH38029,
BC038029, M LEAD poisoning; HET: PIN; 2.10A {Mus
musculus} PDB: 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A*
2g07_A* 2jga_A 2vkq_A 2cn1_A
Length = 297
Score = 26.9 bits (59), Expect = 7.6
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 69 VLLCKDSFGKLDVNVNCAGISCAFKIFNYNKGTVHSLDDFKR---ILLVNTVGTFNVARL 125
++L DS G L + A + KI N L+ + I+LV + V
Sbjct: 233 IILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVKE-ESLEVVNS 291
Query: 126 SAQLI 130
Q
Sbjct: 292 ILQKT 296
>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics
initiative, RSGI, structural genomics, transferase;
1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A
Length = 390
Score = 26.7 bits (60), Expect = 7.7
Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 14/62 (22%)
Query: 20 TVERIVREGGRVVLC---DLPTSEGES-----VAKEL----GPDVKFAPVDVTSEEDVQK 67
T+ ++ G +VL P V + L SEE ++
Sbjct: 41 TLRHLLAGGASLVLLSHLGRPKGPDPKYSLAPVGEALRAHLPEARFAPF-PPGSEE-ARR 98
Query: 68 AV 69
Sbjct: 99 EA 100
>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P
reductase, oxidoreductase; 2.60A {Eimeria tenella}
Length = 319
Score = 26.7 bits (59), Expect = 7.7
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 176 MARDLAGA-GIRVNTIAPG 193
+A + A +RVN I+ G
Sbjct: 220 LAFEAGRARAVRVNCISAG 238
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl
reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica
napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*
Length = 297
Score = 26.6 bits (59), Expect = 7.7
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 176 MARDL-AGAGIRVNTIAPG 193
+A + IRVNTI+ G
Sbjct: 206 LAFEAGRKQNIRVNTISAG 224
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 26.8 bits (60), Expect = 7.7
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 5/62 (8%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDVQK 67
LV S +G + R++ ++ LG V TS + +
Sbjct: 149 LVNACGSAIGHLFAQLSQILNFRLIAV-TRNNKHTEELLRLGAAY----VIDTSTAPLYE 203
Query: 68 AV 69
V
Sbjct: 204 TV 205
>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann
fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma
gondii} PDB: 2o50_A 3nj8_A*
Length = 315
Score = 26.7 bits (59), Expect = 8.1
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 176 MARDLAG-AGIRVNTIAPG 193
+A + G+RVN I+ G
Sbjct: 207 LAWEAGQKYGVRVNAISAG 225
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, tructural genomics;
1.80A {Alicyclobacillus acidocaldarius subsp}
Length = 242
Score = 26.7 bits (58), Expect = 8.1
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 2/79 (2%)
Query: 176 MARDLAGAGIRVNTIAPGLFDTPLLSMLNEKVRNFLARSIPAPQRLGHPDEFAQLVQSII 235
AR GI VN I E +A + R+ P + + Q +
Sbjct: 30 AARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHS--IADAGGGMCRIVQPADISATAQMMT 87
Query: 236 TNPLINGEVIRIDGALRMI 254
+ ++ L +
Sbjct: 88 HQTMQMTLQQVVNQELLAV 106
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 26.5 bits (59), Expect = 8.3
Identities = 28/155 (18%), Positives = 47/155 (30%), Gaps = 28/155 (18%)
Query: 8 LVTGGASGLGKATVERIVREGGRVVLCDLPTSEGESVAKELGPDVKFAPVDVTSEEDVQK 67
LV G + + + + +G V E EL V EED
Sbjct: 25 LVVGANGKVARYLLSELKNKGHEPVAM----VRNEEQGPELRERGASDIVVANLEEDFSH 80
Query: 68 AVLLCKDSFGKLDVNVNCAGISCAFKIFNYNK----GTVHSLD-----DFKRILLVNTVG 118
A D V AG G + ++ KR ++V++VG
Sbjct: 81 AFASI-------DAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVG 133
Query: 119 TFNVARLSAQLIH--------ENKLNEDGLRGVII 145
T + + + H +++L L I+
Sbjct: 134 TVDPDQGPMNMRHYLVAKRLADDELKRSSLDYTIV 168
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Length = 372
Score = 26.5 bits (59), Expect = 8.6
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 7/37 (18%)
Query: 134 KLNEDGLRGVIINTASIAAYEGQSGQ-VAYSASKSGI 169
+ + G + +S G +G AY+A + G+
Sbjct: 87 RWAKQGCAHFV--CSS----AGNAGMAAAYAARQLGV 117
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural
genomics, mycobacterium tuberculosis structural
proteomics project; 1.78A {Mycobacterium tuberculosis}
SCOP: d.122.1.3 PDB: 1ys3_A
Length = 150
Score = 26.0 bits (58), Expect = 8.8
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 10 TGGASGLGKATVERIVRE-GGRVVLCDLP 37
G SGLG A V + + GG L + P
Sbjct: 109 HSG-SGLGLALVAQQAQLHGGTASLENSP 136
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 26.8 bits (60), Expect = 9.1
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 18 KATVERIVREGGRVV 32
V +VR G +++
Sbjct: 216 NVMVSNVVRNGSQIL 230
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 26.5 bits (59), Expect = 9.9
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 18/79 (22%)
Query: 5 VVGLVTGGASGLGKATVERIV-----------REGGRVVLCDLPTSEGESV-AKELGPDV 52
VVG+V G +G GK T +I+ + V+ +E ++ + ++
Sbjct: 119 VVGIV--GPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEI 176
Query: 53 KFAP----VDVTSEEDVQK 67
+ VD+ + K
Sbjct: 177 RPVVKPQYVDLLPKAVKGK 195
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.388
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,885,977
Number of extensions: 241548
Number of successful extensions: 2104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1234
Number of HSP's successfully gapped: 338
Length of query: 254
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 163
Effective length of database: 4,160,982
Effective search space: 678240066
Effective search space used: 678240066
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.1 bits)