BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12834
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 145 bits (365), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 111/191 (58%), Gaps = 21/191 (10%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPF 99
++P++C +C KSF +L +H++TH+G K + C ECGK+F ++L H HTG +P+
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPY 78
Query: 100 ICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRS 159
C CGKSF ++A ++ H+RTHTGEKPY C CG F SQ +
Sbjct: 79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSF-------------------SQLA 119
Query: 160 NLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHF 219
+L++H+R TH +K Y C C K+F R L H + HTGE+PY+C C +F +
Sbjct: 120 HLRAHQR-THTGEKPYKCPECGKSFSREDNLHTHQRT-HTGEKPYKCPECGKSFSRRDAL 177
Query: 220 KKHRRIHTGEK 230
H+R HTG+K
Sbjct: 178 NVHQRTHTGKK 188
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 107/193 (55%), Gaps = 22/193 (11%)
Query: 10 GARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
G +PY C C K+F H THT K P+ C +C KSF +++L +H++TH+G K
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEK-PYKCPECGKSFSDKKDLTRHQRTHTGEK 76
Query: 70 DFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ C ECGK+F NL H HTG +P+ C CGKSF + A ++ H+RTHTGEKPY+C
Sbjct: 77 PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKC 136
Query: 130 EFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRL 189
CG F S+ NL +H+R TH +K Y C C K+F RR
Sbjct: 137 PECGKSF-------------------SREDNLHTHQR-THTGEKPYKCPECGKSFSRRDA 176
Query: 190 LDYHIKAAHTGER 202
L+ H + HTG++
Sbjct: 177 LNVHQR-THTGKK 188
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 84/136 (61%), Gaps = 1/136 (0%)
Query: 1 MEDHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQ 60
+ +H +HTG +PY+C C K+F K H THT K P+ C +C KSF + NL
Sbjct: 37 LAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEK-PYKCPECGKSFSQRANLRA 95
Query: 61 HEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERT 120
H++TH+G K + C ECGK+F L +L H HTG +P+ C CGKSF R+ + H+RT
Sbjct: 96 HQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT 155
Query: 121 HTGEKPYQCEFCGAQF 136
HTGEKPY+C CG F
Sbjct: 156 HTGEKPYKCPECGKSF 171
Score = 114 bits (285), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 92/164 (56%), Gaps = 12/164 (7%)
Query: 80 FGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFK 139
FG+ ++ A+ G +P+ C CGKSF R + +H+RTHTGEKPY+C CG F K
Sbjct: 4 FGSSSSV-AQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 140 GS----SGTESIDKLLLC-----FLSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLL 190
T + +K C SQR+NL++H+R TH +K Y C C K+F + L
Sbjct: 63 KDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHL 121
Query: 191 DYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
H + HTGE+PY+C C +F ++ H+R HTGEKPY C
Sbjct: 122 RAHQR-THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKC 164
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 76/122 (62%), Gaps = 1/122 (0%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEK 63
H +HTG +PY+C C K+F + +AH THT K P++C +C KSF +L H++
Sbjct: 68 HQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEK-PYACPECGKSFSQLAHLRAHQR 126
Query: 64 THSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTG 123
TH+G K + C ECGK+F NL H HTG +P+ C CGKSF R+ + H+RTHTG
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Query: 124 EK 125
+K
Sbjct: 187 KK 188
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 1 MEDHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
+ H +HTG +PY+C C K+F + H THT +K
Sbjct: 149 LHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPF 99
++P+ C +C KSF NL +H++TH+G K + C ECGK+F +L+ H HTG +P+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 100 ICRVCGKSFVRKAEVKDHERTHTGEK 125
C CGKSF R + H+RTH +K
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 46/68 (67%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQ 128
K + C ECGK+F NL+ H HTG +P+ C CGKSF + ++++ H+RTHTGEKPY+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 129 CEFCGAQF 136
C CG F
Sbjct: 63 CPECGKSF 70
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDF 71
+PY+C C K+F + H THT K P+ C +C KSF +L +H++TH+G K +
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEK-PYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 72 VCTECGKAFGTLRNLEVHLAVHTGNR 97
C ECGK+F +L H H +
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 53/107 (49%), Gaps = 21/107 (19%)
Query: 124 EKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKA 183
EKPY+C CG F SQ SNLQ H+R TH +K Y C C K+
Sbjct: 2 EKPYKCPECGKSF-------------------SQSSNLQKHQR-THTGEKPYKCPECGKS 41
Query: 184 FKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
F + L H + HTGE+PY+C C +F +H +H+R H +K
Sbjct: 42 FSQSSDLQKHQRT-HTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 172 DKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
+K Y C C K+F + L H + HTGE+PY+C C +F +KH+R HTGEKP
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRT-HTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 232 YVC 234
Y C
Sbjct: 61 YKC 63
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 1 MEDHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQ 60
++ H +HTG +PY+C C K+F + H THT K P+ C +C KSF +L +
Sbjct: 20 LQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK-PYKCPECGKSFSRSDHLSR 78
Query: 61 HEKTHSGSK 69
H++TH K
Sbjct: 79 HQRTHQNKK 87
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 5/119 (4%)
Query: 9 TGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGS 68
+G+ EC TC K F+SKY K H HT K PF C KC K ++ ++NL++HE + +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEK-PFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 69 KD---FVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHE-RTHTG 123
+ F C+ C + F L +H+ HTG P+ C C + F++K +++ H + H+G
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 45 CEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRP---FIC 101
C C K F ++ L H + H+G K F C +CGK + NL H A + NR F C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 102 RVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQF 136
VC ++F R+ E++ H +HTGE PY+C C QF
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQF 104
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 23/138 (16%)
Query: 94 TGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLC 153
+G+ C C K F+ K +K H R HTGEKP++C CG C
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGK------------------C 44
Query: 154 FLSQRSNLQSHKRATHFN--DKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNA 211
+ ++ NL H+ N ++ + C+ C + F+RR L H+ +HTGE PY+C C+
Sbjct: 45 YF-RKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHM-VSHTGEMPYKCSSCSQ 102
Query: 212 TFIYPEHFKKHR-RIHTG 228
F+ + + H ++H+G
Sbjct: 103 QFMQKKDLQSHMIKLHSG 120
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 23/138 (16%)
Query: 66 SGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHER---THT 122
SGS C C K F + L+VH HTG +PF C CGK + RK + +HE +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 123 GEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPK 182
E+ + C C FR +R L+ H +H + Y C+SC +
Sbjct: 63 SEQVFTCSVCQETFR-------------------RRMELRLH-MVSHTGEMPYKCSSCSQ 102
Query: 183 AFKRRRLLDYHIKAAHTG 200
F +++ L H+ H+G
Sbjct: 103 QFMQKKDLQSHMIKLHSG 120
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 1 MEDHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDR------KRPFSCEKCDKSFYT 54
++ H HTG +P+EC C K Y K +L+ H R ++ F+C C ++F
Sbjct: 23 LKVHNRKHTGEKPFECPKCGKC----YFRKENLLEHEARNCMNRSEQVFTCSVCQETFRR 78
Query: 55 QQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLA-VHTG 95
+ L H +H+G + C+ C + F ++L+ H+ +H+G
Sbjct: 79 RMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 140 GSSGTESIDKLLLC---FLSQRSNLQSHKRATHFNDKRYPCTSCPKA-FKRRRLLDYHIK 195
GSSG+ ++ C FLS + L+ H R H +K + C C K F++ LL++ +
Sbjct: 1 GSSGSSGVE-CPTCHKKFLS-KYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEAR 57
Query: 196 -AAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
+ E+ + C +C TF + H HTGE PY C
Sbjct: 58 NCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKC 97
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 40 KRPFSCE--KCDKSFYTQQNLVQHEKTHSGSKDFVCT--ECGKAFGTLRNLEVHLAVHTG 95
KRPF C C+K ++ +L H + H+G K + C +C + F L+ H HTG
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 96 NRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSS 142
+PF C+ C + F R +K H RTHTGEKP+ C + Q +F S
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSD 110
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 159 SNLQSHKRATHFNDKRYPCT--SCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYP 216
S+LQ H R H +K Y C C + F R L H + HTG +P+QC C F
Sbjct: 22 SHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCKTCQRKFSRS 79
Query: 217 EHFKKHRRIHTGEKPYVC 234
+H K H R HTGEKP+ C
Sbjct: 80 DHLKTHTRTHTGEKPFSC 97
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 1 MEDHLVSHTGARPYEC--KTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNL 58
++ H HTG +PY+C K C++ F K H HT K PF C+ C + F +L
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK-PFQCKTCQRKFSRSDHL 82
Query: 59 VQHEKTHSGSKDFVC--TECGKAFGTLRNLEVHLAVH 93
H +TH+G K F C C K F L H +H
Sbjct: 83 KTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 198 HTGERPYQCDI--CNATFIYPEHFKKHRRIHTGEKPYVCEV 236
HTGE+PYQCD C F + K+H+R HTG KP+ C+
Sbjct: 31 HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT 71
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 199 TGERPYQCDI--CNATFIYPEHFKKHRRIHTGEKPYVCEVR 237
+ +RP+ C CN + H + H R HTGEKPY C+ +
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFK 42
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 40 KRPFSC--EKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNR 97
+RP++C E CD+ F NL +H + H+G K F C C + F +L H+ HTG +
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 98 PFICRVCGKSFVRKAEVKDHERTHTGEK 125
PF C +CG+ F R E K H + H +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 76 CGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQ 135
C + F NL H+ +HTG +PF CR+C ++F R + H RTHTGEKP+ C+ CG +
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 136 F 136
F
Sbjct: 72 F 72
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 176 PCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
P SC + F L HI+ HTG++P+QC IC F +H H R HTGEKP+ C+
Sbjct: 8 PVESCDRRFSDSSNLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 236 V 236
+
Sbjct: 67 I 67
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 46/107 (42%), Gaps = 19/107 (17%)
Query: 124 EKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKA 183
E+PY C RF SS NL H R H K + C C +
Sbjct: 2 ERPYACPVESCDRRFSDSS-----------------NLTRHIR-IHTGQKPFQCRICMRN 43
Query: 184 FKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
F R L HI+ HTGE+P+ CDIC F + K+H +IH +K
Sbjct: 44 FSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEK 63
H+ HTG +P++C+ C + F H+ THT K PF+C+ C + F +H K
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK-PFACDICGRKFARSDERKRHTK 83
Query: 64 THSGSKD 70
H KD
Sbjct: 84 IHLRQKD 90
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 201 ERPYQCDI--CNATFIYPEHFKKHRRIHTGEKPYVCEVRLAVF 241
ERPY C + C+ F + +H RIHTG+KP+ C + + F
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNF 44
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 48 CDKSFYTQQNLVQH-EKTHSGS---KDFVC--TEC---GKAFGTLRNLEVHLAVHTGNRP 98
CD++F T LV H H G + VC EC GK+F L H+ VHTG +P
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 99 FICRV--CGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSS 142
F C CGK F R +K H+RTHTGEKP++CEF G RF SS
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSS 136
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 45 CEKCDKSFYTQQNLVQHEKTHSGSKDFVC--TECGKAFGTLRNLEVHLAVHTGNRPFICR 102
C + KSF + LV H + H+G K F C CGK F NL++H HTG +PF C
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 103 V--CGKSFVRKAEVKDHERTHTGEK 125
C + F ++ K H HT +K
Sbjct: 125 FEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Query: 180 CP---KAFKRRRLLDYHIKAAHTGERPYQCDI--CNATFIYPEHFKKHRRIHTGEKPYVC 234
CP K+FK + L HI+ HTGE+P+ C C F E+ K H+R HTGEKP+ C
Sbjct: 65 CPREGKSFKAKYKLVNHIRV-HTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 235 E 235
E
Sbjct: 124 E 124
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 15 ECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC--EKCDKSFYTQQNLVQHEKTHSGSKDFV 72
EC K+F +KY H+ HT K PF C C K F +NL H++TH+G K F
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEK-PFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 73 C--TECGKAFGTLRNLEVHLAVHTGNR 97
C C + F + + H+ VHT ++
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 168 THFNDKRYPCT--SCPKAFKRRRLLDYHIKAAHTGERPYQCDI--CNATFIYPEHFKKHR 223
H +K +PC C K F R L H K HTGE+P++C+ C+ F KKH
Sbjct: 84 VHTGEKPFPCPFPGCGKIFARSENLKIH-KRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Query: 224 RIHTGEK 230
+HT +K
Sbjct: 143 HVHTSDK 149
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 3 DHLVSHTGARPYEC--KTCKKTFVSKYTYKAHLVTHTDRKRPFSC--EKCDKSFYTQQNL 58
+H+ HTG +P+ C C K F K H THT K PF C E CD+ F +
Sbjct: 80 NHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEK-PFKCEFEGCDRRFANSSDR 138
Query: 59 VQHEKTHSGSK 69
+H H+ K
Sbjct: 139 KKHMHVHTSDK 149
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 21/166 (12%)
Query: 69 KDFVCT--ECGKAFGTLRNLEVHLAVHTGNRPFICRV--CGKSFVRKAEVKDHERTHTGE 124
K ++C+ +CG A+ L+ HL HTG +PF C+ C K F + H THTGE
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 125 KPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKAF 184
K + C+ G RF + + ++ N++ HF + C KAF
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKK-------HFNRFHNIKICVYVCHFEN-------CGKAF 116
Query: 185 KRRRLLDYHIKAAHTGERPYQC--DICNATFIYPEHFKKHRRIHTG 228
K+ L H + +HT + PY+C + C+ F P K+H ++H G
Sbjct: 117 KKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 72/149 (48%), Gaps = 14/149 (9%)
Query: 1 MEDHLVSHTGARPYECKT--CKKTFVSKYTYKAHLVTHTDRKRPFSCEK--CDKSFYTQQ 56
++ HL HTG +P+ CK C+K F S + H +THT K F+C+ CD F T+
Sbjct: 30 LQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN-FTCDSDGCDLRFTTKA 88
Query: 57 NLVQHEKTHSGSKD--FVC--TECGKAFGTLRNLEVHLAVHTGNRPFIC--RVCGKSFVR 110
N+ +H K +VC CGKAF L+VH HT P+ C C K F
Sbjct: 89 NMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSL 148
Query: 111 KAEVKDHERTHTG---EKPYQCEFCGAQF 136
+ +K HE+ H G +K C F G +
Sbjct: 149 PSRLKRHEKVHAGYPCKKDDSCSFVGKTW 177
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Query: 19 CKKTFVSKYTYKAHLVTHTDRKRPFSC--EKCDKSFYTQQNLVQHEKTHSGSKDFVCTE- 75
C + + +AHL HT K PF C E C+K F + +L +H TH+G K+F C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEK-PFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 78
Query: 76 -CGKAFGTLRNLEVHLAVHTGNR--PFICRV--CGKSFVRKAEVKDHERTHTGEKPYQCE 130
C F T N++ H + ++C CGK+F + ++K H+ +HT + PY+C
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Query: 131 FCGAQFRF 138
G RF
Sbjct: 139 HEGCDKRF 146
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 42/61 (68%)
Query: 76 CGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQ 135
C + F NL+ H+ +HTG +PF CR+C ++F ++A + H RTHTGEKP+ C+ CG +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 136 F 136
F
Sbjct: 72 F 72
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 40 KRPFSC--EKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNR 97
+RP++C E CD+ F + NL H + H+G K F C C + F +L H+ HTG +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 98 PFICRVCGKSFVRKAEVKDHERTHTGEK 125
PF C +CG+ F H + H +K
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 12 RPYEC--KTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
RPY C ++C + F K H+ HT +K PF C C ++F Q +L H +TH+G K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQK-PFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 70 DFVCTECGKAFGTLRNLEVHLAVH 93
F C CG+ F TL H +H
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIH 85
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 176 PCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
P SC + F ++ LD HI+ HTG++P+QC IC F H R HTGEKP+ C+
Sbjct: 8 PVESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACD 66
Query: 236 V 236
+
Sbjct: 67 I 67
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 1 MEDHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQ 60
++ H+ HTG +P++C+ C + F + + AH+ THT K PF+C+ C + F T +
Sbjct: 22 LDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK-PFACDICGRKFATLHTRTR 80
Query: 61 HEKTHSGSKD 70
H K H KD
Sbjct: 81 HTKIHLRQKD 90
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 52/136 (38%), Gaps = 51/136 (37%)
Query: 97 RPFICRV--CGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCF 154
RP+ C V C + F +K + H R HTG+KP+QC C F
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNF------------------ 44
Query: 155 LSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFI 214
SQ+++L +H R HTGE+P+ CDIC F
Sbjct: 45 -SQQASLNAHIR------------------------------THTGEKPFACDICGRKFA 73
Query: 215 YPEHFKKHRRIHTGEK 230
+H +IH +K
Sbjct: 74 TLHTRTRHTKIHLRQK 89
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 201 ERPYQCDI--CNATFIYPEHFKKHRRIHTGEKPYVCEVRLAVF 241
ERPY C + C+ F + H RIHTG+KP+ C + + F
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNF 44
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 40 KRPFSC--EKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNR 97
+RP++C E CD+ F +L +H + H+G K F C C + F +L H+ HTG +
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 98 PFICRVCGKSFVRKAEVKDHERTHTGEK 125
PF C +CG+ F R E K H + H +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 76 CGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQ 135
C + F +L H+ +HTG +PF CR+C ++F R + H RTHTGEKP+ C+ CG +
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 136 F 136
F
Sbjct: 72 F 72
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 176 PCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
P SC + F R L HI+ HTG++P+QC IC F +H H R HTGEKP+ C+
Sbjct: 8 PVESCDRRFSRSADLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 236 V 236
+
Sbjct: 67 I 67
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 124 EKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKA 183
E+PY C ES D+ S+ ++L H R H K + C C +
Sbjct: 2 ERPYACP-------------VESCDRRF----SRSADLTRHIR-IHTGQKPFQCRICMRN 43
Query: 184 FKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
F R L HI+ HTGE+P+ CDIC F + K+H +IH +K
Sbjct: 44 FSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEK 63
H+ HTG +P++C+ C + F H+ THT K PF+C+ C + F +H K
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK-PFACDICGRKFARSDERKRHTK 83
Query: 64 THSGSKD 70
H KD
Sbjct: 84 IHLRQKD 90
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 201 ERPYQCDI--CNATFIYPEHFKKHRRIHTGEKPYVCEVRLAVF 241
ERPY C + C+ F +H RIHTG+KP+ C + + F
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNF 44
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 40 KRPFSC--EKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNR 97
+RP++C E CD+ F L +H + H+G K F C C + F +L H+ HTG +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 98 PFICRVCGKSFVRKAEVKDHERTHTGEK 125
PF C +CG+ F R E K H + H +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 76 CGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQ 135
C + F L H+ +HTG +PF CR+C ++F R + H RTHTGEKP+ C+ CG +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 136 F 136
F
Sbjct: 72 F 72
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 176 PCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
P SC + F R L HI+ HTG++P+QC IC F +H H R HTGEKP+ C+
Sbjct: 8 PVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 236 V 236
+
Sbjct: 67 I 67
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEK 63
H+ HTG +P++C+ C + F H+ THT K PF+C+ C + F +H K
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK-PFACDICGRKFARSDERKRHTK 83
Query: 64 THSGSKD 70
H KD
Sbjct: 84 IHLRQKD 90
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 124 EKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKA 183
E+PY C RF S+ L H R H K + C C +
Sbjct: 2 ERPYACPVESCDRRF-----------------SRSDELTRHIR-IHTGQKPFQCRICMRN 43
Query: 184 FKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
F R L HI+ HTGE+P+ CDIC F + K+H +IH +K
Sbjct: 44 FSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 201 ERPYQCDI--CNATFIYPEHFKKHRRIHTGEKPYVCEVRLAVF 241
ERPY C + C+ F + +H RIHTG+KP+ C + + F
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 44
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 40 KRPFSC--EKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNR 97
+RP++C E CD+ F +L +H + H+G K F C C + F +L H+ HTG +
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 98 PFICRVCGKSFVRKAEVKDHERTHTGEK 125
PF C +CG+ F R E K H + H +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 76 CGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQ 135
C + F +L H+ +HTG +PF CR+C ++F R + H RTHTGEKP+ C+ CG +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 136 F 136
F
Sbjct: 72 F 72
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 176 PCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
P SC + F + L HI+ HTG++P+QC IC F +H H R HTGEKP+ C+
Sbjct: 8 PVESCDRRFSQSGSLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 236 V 236
+
Sbjct: 67 I 67
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 48/107 (44%), Gaps = 19/107 (17%)
Query: 124 EKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKA 183
E+PY C ES D+ SQ +L H R H K + C C +
Sbjct: 2 ERPYACP-------------VESCDRRF----SQSGSLTRHIR-IHTGQKPFQCRICMRN 43
Query: 184 FKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
F R L HI+ HTGE+P+ CDIC F + K+H +IH +K
Sbjct: 44 FSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEK 63
H+ HTG +P++C+ C + F H+ THT K PF+C+ C + F +H K
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK-PFACDICGRKFARSDERKRHTK 83
Query: 64 THSGSKD 70
H KD
Sbjct: 84 IHLRQKD 90
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 201 ERPYQCDI--CNATFIYPEHFKKHRRIHTGEKPYVCEVRLAVF 241
ERPY C + C+ F +H RIHTG+KP+ C + + F
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNF 44
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 40 KRPFSC--EKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNR 97
+RP++C E CD+ F L +H + H+G K F C C + F +L H+ HTG +
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 98 PFICRVCGKSFVRKAEVKDHERTHTGEK 125
PF C +CG+ F R E K H + H +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 76 CGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQ 135
C + F L H+ +HTG +PF CR+C ++F R + H RTHTGEKP+ C+ CG +
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 136 F 136
F
Sbjct: 72 F 72
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 176 PCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
P SC + F R L HI+ HTG++P+QC IC F +H H R HTGEKP+ C+
Sbjct: 8 PVESCDRRFSRSAELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 236 V 236
+
Sbjct: 67 I 67
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEK 63
H+ HTG +P++C+ C + F H+ THT K PF+C+ C + F +H K
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK-PFACDICGRKFARSDERKRHTK 83
Query: 64 THSGSKD 70
H KD
Sbjct: 84 IHLRQKD 90
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 19/107 (17%)
Query: 124 EKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKA 183
E+PY C ES D+ S+ + L H R H K + C C +
Sbjct: 2 ERPYACP-------------VESCDRRF----SRSAELTRHIR-IHTGQKPFQCRICMRN 43
Query: 184 FKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
F R L HI+ HTGE+P+ CDIC F + K+H +IH +K
Sbjct: 44 FSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 201 ERPYQCDI--CNATFIYPEHFKKHRRIHTGEKPYVCEVRLAVF 241
ERPY C + C+ F +H RIHTG+KP+ C + + F
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNF 44
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 50/97 (51%), Gaps = 19/97 (19%)
Query: 70 DFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
F C CGK+F L HL +H+ RP+ C+ CGK F +K+++K H HTGEKP++C
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 130 EFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKR 166
+ CG F SQ SNL +H R
Sbjct: 61 QVCGKAF-------------------SQSSNLITHSR 78
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%)
Query: 43 FSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICR 102
F C+ C KSF L H HS ++ + C CGK F +++ H +HTG +P C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 103 VCGKSFVRKAEVKDHERTHTG 123
VCGK+F + + + H R HTG
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 14 YECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVC 73
++CK C K+F T HL+ H+D RP+ C+ C K F+ + ++ +H H+G K C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSD-TRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 74 TECGKAFGTLRNLEVHLAVHTG 95
CGKAF NL H HTG
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 175 YPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
+ C C K+FKR L H+ H+ RPY C C F KKH IHTGEKP+ C
Sbjct: 2 FDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 235 EVRLAVFYYVTCLFNMIQPKRFRLG 259
+V F + N+I R G
Sbjct: 61 QVCGKAFSQSS---NLITHSRKHTG 82
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 1 MEDHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQ 60
+ HL+ H+ RPY C+ C K F K K H HT K P C+ C K+F NL+
Sbjct: 17 LSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEK-PHKCQVCGKAFSQSSNLIT 75
Query: 61 HEKTHSG 67
H + H+G
Sbjct: 76 HSRKHTG 82
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 21/102 (20%)
Query: 127 YQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKAFKR 186
+ C+ CG F+ RS+ S H + + YPC C K F +
Sbjct: 2 FDCKICGKSFK--------------------RSSTLSTHLLIHSDTRPYPCQYCGKRFHQ 41
Query: 187 RRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTG 228
+ + H HTGE+P++C +C F + H R HTG
Sbjct: 42 KSDMKKHT-FIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 17 KTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT-- 74
K C K F + HL HT R C +C K+F L +H+ H+G K F CT
Sbjct: 11 KGCTKMFRDNSAMRKHL--HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFE 68
Query: 75 ECGKAFGTLRNLEVHLAVHTGNRPFICRV--CGKSFVRKAEVKDHERTHTGEKPYQ 128
CGK F NL H+ +HTG+RP++C C K F + +K H TH K Q
Sbjct: 69 GCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 48 CDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRV--CG 105
C K F + +H TH G + VC ECGKAF L+ H VHTG +PF C CG
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 106 KSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTES 146
K F ++ H R HTG++PY C F G +F S+ +S
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKS 112
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 62/157 (39%), Gaps = 50/157 (31%)
Query: 76 CGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQ 135
C K F + HL H G R +C CGK+FV +++K H+ HTGEKP+QC F G
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 136 FRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIK 195
RF S+D NL++H R
Sbjct: 72 KRF-------SLD----------FNLRTHVR----------------------------- 85
Query: 196 AAHTGERPYQC--DICNATFIYPEHFKKHRRIHTGEK 230
HTG+RPY C D CN F + K H H K
Sbjct: 86 -IHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 1 MEDHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC--EKCDKSFYTQQNL 58
M HL +H G R + C C K FV K H + HT K PF C E C K F NL
Sbjct: 23 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEK-PFQCTFEGCGKRFSLDFNL 80
Query: 59 VQHEKTHSGSKDFVC--TECGKAFGTLRNLEVHLAVHT 94
H + H+G + +VC C K F NL+ H+ H
Sbjct: 81 RTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 156 SQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQC--DICNATF 213
+ R +L +H H C C KAF L H + HTGE+P+QC + C F
Sbjct: 22 AMRKHLHTHGPRVHV------CAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEGCGKRF 74
Query: 214 IYPEHFKKHRRIHTGEKPYVC 234
+ + H RIHTG++PYVC
Sbjct: 75 SLDFNLRTHVRIHTGDRPYVC 95
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 176 PCTSCPKAFKRRRLLDYHIKAAHT-GERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
P C K F+ + H+ HT G R + C C F+ K+H+ +HTGEKP+ C
Sbjct: 9 PHKGCTKMFRDNSAMRKHL---HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 40 KRPFSC--EKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNR 97
+RP++C E CD+ F L +H + H+G K F C C + F +L H+ HTG +
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 98 PFICRVCGKSFVRKAEVKDHERTH 121
PF C +CG+ F R E K H + H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 76 CGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQ 135
C + F L H+ +HTG +PF CR+C ++F R + H RTHTGEKP+ C+ CG +
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 136 F 136
F
Sbjct: 71 F 71
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 176 PCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
P SC + F R L HI+ HTG++P+QC IC F +H H R HTGEKP+ C+
Sbjct: 7 PVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 65
Query: 236 V 236
+
Sbjct: 66 I 66
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 45/103 (43%), Gaps = 19/103 (18%)
Query: 124 EKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKA 183
E+PY C ES D+ S+ L H R H K + C C +
Sbjct: 1 ERPYACP-------------VESCDRRF----SRSDELTRHIR-IHTGQKPFQCRICMRN 42
Query: 184 FKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIH 226
F R L HI+ HTGE+P+ CDIC F + K+H +IH
Sbjct: 43 FSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEK 63
H+ HTG +P++C+ C + F H+ THT K PF+C+ C + F +H K
Sbjct: 24 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK-PFACDICGRKFARSDERKRHTK 82
Query: 64 TH 65
H
Sbjct: 83 IH 84
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 201 ERPYQCDI--CNATFIYPEHFKKHRRIHTGEKPYVCEVRLAVF 241
ERPY C + C+ F + +H RIHTG+KP+ C + + F
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 43
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 40 KRPFSC--EKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNR 97
+RP++C E CD+ F L +H + H+G K F C C + F +L H+ HTG +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 98 PFICRVCGKSFVRKAEVKDHERTH 121
PF C +CG+ F R E K H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 76 CGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQ 135
C + F L H+ +HTG +PF CR+C ++F R + H RTHTGEKP+ C+ CG +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 136 F 136
F
Sbjct: 72 F 72
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 176 PCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
P SC + F R L HI+ HTG++P+QC IC F +H H R HTGEKP+ C+
Sbjct: 8 PVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 236 V 236
+
Sbjct: 67 I 67
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 45/103 (43%), Gaps = 19/103 (18%)
Query: 124 EKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKA 183
E+PY C ES D+ S+ L H R H K + C C +
Sbjct: 2 ERPYACP-------------VESCDRRF----SRSDELTRHIR-IHTGQKPFQCRICMRN 43
Query: 184 FKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIH 226
F R L HI+ HTGE+P+ CDIC F + K+H +IH
Sbjct: 44 FSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEK 63
H+ HTG +P++C+ C + F H+ THT K PF+C+ C + F +H K
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK-PFACDICGRKFARSDERKRHTK 83
Query: 64 TH 65
H
Sbjct: 84 IH 85
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 201 ERPYQCDI--CNATFIYPEHFKKHRRIHTGEKPYVCEVRLAVF 241
ERPY C + C+ F + +H RIHTG+KP+ C + + F
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 44
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 71/165 (43%), Gaps = 29/165 (17%)
Query: 46 EKCDKSFYTQQNLVQH---EKTHSGSKDFVCTECG-----KAFGTLRNLEVHLAVHTGNR 97
+ C + F +Q+ LV H E H K+FVC G + F L VH+ HTG +
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK 66
Query: 98 PFIC--RVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFL 155
P C C KS+ R +K H R+HTGEKPY CE G F
Sbjct: 67 PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAF----------------- 109
Query: 156 SQRSNLQSHKRATHFNDKRYPCT--SCPKAFKRRRLLDYHIKAAH 198
S S+ H+ TH N+K Y C C K + L H+K H
Sbjct: 110 SNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 21 KTFVSKYTYKAHLVTHTDRKRPFSC--EKCDKSFYTQQNLVQHEKTHSGSKDFVCTE--C 76
+ F ++Y H+ HT K P C E C KS+ +NL H ++H+G K ++C C
Sbjct: 47 RPFKAQYMLVVHMRRHTGEK-PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGC 105
Query: 77 GKAFGTLRNLEVHLA-VHTGNRPFICRV--CGKSFVRKAEVKDHERT 120
KAF + H H+ +P++C++ C K + + ++ H +T
Sbjct: 106 SKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC--DICNATFIYPEHFKKHRRIHTGEKPYVC 234
C+ + FK + +L H++ HTGE+P++C + C ++ E+ K H R HTGEKPY+C
Sbjct: 42 CSRELRPFKAQYMLVVHMRR-HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMC 100
Query: 235 E 235
E
Sbjct: 101 E 101
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 4 HLVSHTGARPYEC--KTCKKTFVSKYTYKAHLVTHTDRKRPFSC--EKCDKSFYTQQNLV 59
H+ HTG +P++C + C+K++ K HL +HT K P+ C E C K+F +
Sbjct: 58 HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEK-PYMCEHEGCSKAFSNASDRA 116
Query: 60 QHE-KTHSGSKDFVCT--ECGKAFGTLRNLEVHL 90
+H+ +THS K +VC C K + +L H+
Sbjct: 117 KHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV 150
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 1 MEDHLVSHTGARPYEC--KTCKKTFVSKYTYKAHLVTHTDRKRPFSCE--KCDKSFYTQQ 56
++ HL SHTG +PY C + C K F + H ++P+ C+ C K +
Sbjct: 85 LKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPS 144
Query: 57 NLVQHEKTHSG 67
+L +H KT G
Sbjct: 145 SLRKHVKTVHG 155
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 76 CGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQ 135
C + F NL+ H+ +HTG +PF CR+C ++F + + H RTHTGEKP+ C+ CG +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 136 F 136
F
Sbjct: 72 F 72
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 40 KRPFSC--EKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNR 97
+RP++C E CD+ F + NL H + H+G K F C C + F L H+ HTG +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 98 PFICRVCGKSFVRKAEVKDHERTHTGEK 125
PF C +CG+ F H + H +K
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 12 RPYEC--KTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
RPY C ++C + F K H+ HT +K PF C C ++F L QH +TH+G K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQK-PFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 70 DFVCTECGKAFGTLRNLEVHLAVH 93
F C CG+ F TL + H +H
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIH 85
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 176 PCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
P SC + F ++ LD HI+ HTG++P+QC IC F +H R HTGEKP+ C+
Sbjct: 8 PVESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACD 66
Query: 236 V 236
+
Sbjct: 67 I 67
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 1 MEDHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQ 60
++ H+ HTG +P++C+ C + F H+ THT K PF+C+ C + F T +
Sbjct: 22 LDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK-PFACDICGRKFATLHTRDR 80
Query: 61 HEKTHSGSKD 70
H K H KD
Sbjct: 81 HTKIHLRQKD 90
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
Query: 124 EKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKA 183
E+PY C ES D+ SQ++NL +H R H K + C C +
Sbjct: 2 ERPYACP-------------VESCDRRF----SQKTNLDTHIRI-HTGQKPFQCRICMRN 43
Query: 184 FKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
F + L+ HI+ HTGE+P+ CDIC F +H +IH +K
Sbjct: 44 FSQHTGLNQHIRT-HTGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 201 ERPYQCDI--CNATFIYPEHFKKHRRIHTGEKPYVCEVRLAVFYYVTCLFNMIQ 252
ERPY C + C+ F + H RIHTG+KP+ C + + F T L I+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR 55
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQ 128
K+F+C CG+ F NL +H HT RP+ C +C K+F R+ ++DH H+ EKP++
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 129 CEFCGAQF 136
C+ CG F
Sbjct: 76 CQECGKGF 83
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDF 71
+ + CK C + F Y H THTD +RP++C+ C K+F Q +L H HS K F
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTD-ERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 72 VCTECGKAFGTLRNLEVHLAVH 93
C ECGK F R L VH +H
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLH 96
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPF 99
K+ F C+ C + F NL+ HE+TH+ + + C C KAF +L H +H+ +PF
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 100 ICRVCGKSFVRKAEVKDHERTH 121
C+ CGK F + + H+ H
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLH 96
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 20/97 (20%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLS 156
+ FIC+ CG+ F + + HERTHT E+PY C+ C FR
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFR------------------- 56
Query: 157 QRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYH 193
++ +L+ H R H +K + C C K F + R L H
Sbjct: 57 RQDHLRDH-RYIHSKEKPFKCQECGKGFCQSRTLAVH 92
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 173 KRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPY 232
K + C C + F + L H + HT ERPY CDIC+ F +H + HR IH+ EKP+
Sbjct: 16 KEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 233 VCE 235
C+
Sbjct: 75 KCQ 77
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEK 63
H +HT RPY C C K F + + H H+ +++PF C++C K F + L H+
Sbjct: 36 HERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS-KEKPFKCQECGKGFCQSRTLAVHKT 94
Query: 64 TH 65
H
Sbjct: 95 LH 96
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 21/103 (20%)
Query: 124 EKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKA 183
+K + C+FCG F ++ NL H+R TH +++ Y C C KA
Sbjct: 15 KKEFICKFCGRHF-------------------TKSYNLLIHER-THTDERPYTCDICHKA 54
Query: 184 FKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIH 226
F+R+ L H + H+ E+P++C C F H+ +H
Sbjct: 55 FRRQDHLRDH-RYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCEV 236
++ + C C F + H R HT E+PY C++
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDI 50
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 1 MEDHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRP 42
+ DH H+ +P++C+ C K F T H H P
Sbjct: 61 LRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSP 102
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 66 SGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEK 125
SG K + C +CGK+F + H+++H G RP+ C VCGK F K + H + HTG K
Sbjct: 6 SGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 126 PYQCEFCGAQFRFKGS 141
PY+C C +F ++ S
Sbjct: 65 PYECNICAKRFMWRDS 80
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 171 NDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
DK YPC C K+F + D H+ + H G RPY C +C F H H +IHTG K
Sbjct: 7 GDKLYPC-QCGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 231 PYVCEVRLAVFYY 243
PY C + F +
Sbjct: 65 PYECNICAKRFMW 77
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 47 KCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGK 106
+C KSF + +H H G + + C CGK F +L H+ +HTG +P+ C +C K
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
Query: 107 SFVRKAEVKDH 117
F+ + H
Sbjct: 74 RFMWRDSFHRH 84
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 140 GSSGTESIDKLLLCFLSQRSNLQSHK---RATHFNDKRYPCTSCPKAFKRRRLLDYHIKA 196
GSSG+ S DKL C + +S + + H + Y C C K FK + L H+K
Sbjct: 1 GSSGS-SGDKLYPCQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 59
Query: 197 AHTGERPYQCDICNATFIYPEHFKKH 222
HTG +PY+C+IC F++ + F +H
Sbjct: 60 -HTGIKPYECNICAKRFMWRDSFHRH 84
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 9 TGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGS 68
+G + Y C+ C K+F K H+ H RP+ C C K F + +LV H K H+G
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGL-RPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 69 KDFVCTECGKAF 80
K + C C K F
Sbjct: 64 KPYECNICAKRF 75
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 21/101 (20%)
Query: 94 TGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLC 153
+G++ + C+ CGKSF K++ H H G +PY C CG +F+ K
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMK-------------- 50
Query: 154 FLSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHI 194
+L H + H K Y C C K F R H+
Sbjct: 51 -----HHLVGHMK-IHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 2 EDHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQH 61
+ H+ H G RPY C C K F K+ H+ HT K P+ C C K F + + +H
Sbjct: 26 DRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK-PYECNICAKRFMWRDSFHRH 84
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 1 MEDHLVSH----TGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQ 56
M+ HLV H TG +PYEC C K F+ + ++ H+ SC K ++ +Q
Sbjct: 49 MKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVT---------SCTKSYEAAKAEQ 99
Query: 57 NLVQHEKTHSG 67
N + SG
Sbjct: 100 NTTEASGPSSG 110
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 172 DKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
DK Y C C +F+ + L H K HTGE+PY+C+IC A F P + K H RIH+GEKP
Sbjct: 15 DKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%)
Query: 68 SKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
K + C C +F NL H VHTG +P+ C +CG F R A +K H R H+GEKP
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 41 RPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
+P+ C++C SF + NL H+ H+G K + C CG F NL+ H +H+G +P
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 96 NRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQF 136
++P+ C C SF K + H+ HTGEKPY+C CGAQF
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQF 55
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCEVRLAVF 241
++PY+CD C A+F Y + H+ +HTGEKPY C + A F
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQF 55
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+PY+C C+ +F K +H HT K P+ C C F NL H + HSG K
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEK-PYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 1 MEDHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
+ H HTG +PY C C F K H H+ K
Sbjct: 33 LASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 66 SGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGE- 124
SGS C CGK F + +L H H+G +P+ C VCG F RK + H R+H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 125 -KPYQCEFCGAQF 136
KPY C+ CG F
Sbjct: 63 GKPYICQSCGKGF 75
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 18/107 (16%)
Query: 94 TGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLC 153
+G+ C +CGK F + H+ +H+GEKPY C CG +F+ K D++
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRK--------DRMSY- 53
Query: 154 FLSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTG 200
+++SH + K Y C SC K F R L+ HIK H+G
Sbjct: 54 ------HVRSHDGSV---GKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 43 FSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGN--RPFI 100
+CE C K F +L +H+ +HSG K + C CG F + H+ H G+ +P+I
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 101 CRVCGKSFVRKAEVKDH-ERTHTG 123
C+ CGK F R + H ++ H+G
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 9 TGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGS 68
+G+ C+ C K F Y H ++H+ K P+SC C F + + H ++H GS
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEK-PYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 69 --KDFVCTECGKAFGTLRNLEVHL-AVHTG 95
K ++C CGK F +L H+ VH+G
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 24/110 (21%)
Query: 122 TGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCP 181
+G CE CG FR +L HK +H +K Y C C
Sbjct: 3 SGSSGVACEICGKIFR-------------------DVYHLNRHK-LSHSGEKPYSCPVCG 42
Query: 182 KAFKRRRLLDYHIKAAHTGE--RPYQCDICNATFIYPEHFKKH-RRIHTG 228
FKR+ + YH+++ H G +PY C C F P+H H +++H+G
Sbjct: 43 LRFKRKDRMSYHVRS-HDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGE--KPYVC 234
C C K F+ L+ H K +H+GE+PY C +C F + H R H G KPY+C
Sbjct: 10 CEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 235 E 235
+
Sbjct: 69 Q 69
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 1 MEDHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDR-KRPFSCEKCDKSFYTQQNLV 59
+ H +SH+G +PY C C F K H+ +H +P+ C+ C K F +L
Sbjct: 23 LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN 82
Query: 60 QH-EKTHSG 67
H ++ HSG
Sbjct: 83 GHIKQVHSG 91
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%)
Query: 199 TGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCEVRLAVFYYVTCLFNMIQPKRFRL 258
+G C+IC F H +H+ H+GEKPY C V F + ++ +
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 259 GRPHLLSQATPVFS 272
G+P++ FS
Sbjct: 63 GKPYICQSCGKGFS 76
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 42 PFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFIC 101
P CE C K F + L H + H+G K + C C A +L HL +H+ RPF C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 102 RVCGKSFVRKAEVKDHERTHTGE 124
++C + +++ H R+HTG+
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGD 90
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 13 PYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFV 72
P++C+ C K F K K H+ HT K P+ C+ CD + +L +H + HS + F
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVK-PYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 73 CTECGKAFGTLRNLEVHLAVHTGN 96
C C A L VHL HTG+
Sbjct: 67 CQICPYASRNSSQLTVHLRSHTGD 90
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 21/104 (20%)
Query: 98 PFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQ 157
P C VCGK F RK ++K H R HTG KPY+C+ C +
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYA-------------------AAD 48
Query: 158 RSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGE 201
S+L H R H +++ + C CP A + L H++ +HTG+
Sbjct: 49 SSSLNKHLR-IHSDERPFKCQICPYASRNSSQLTVHLR-SHTGD 90
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 73 CTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFC 132
C CGK F L+ H+ HTG +P+ C+ C + + + H R H+ E+P++C+ C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 1 MEDHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQ 60
++ H+ HTG +PY+CKTC + HL H+D +RPF C+ C + L
Sbjct: 24 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD-ERPFKCQICPYASRNSSQLTV 82
Query: 61 HEKTHSG 67
H ++H+G
Sbjct: 83 HLRSHTG 89
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCEV 236
C C K F R+ L H++ HTG +PY+C C+ KH RIH+ E+P+ C++
Sbjct: 11 CEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 140 GSSGTESIDKLLLCF--LSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAA 197
GSSG+ K +C S++ L++H R H K Y C +C A L+ H++
Sbjct: 1 GSSGSSGPHKCEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLRI- 58
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGE 229
H+ ERP++C IC H R HTG+
Sbjct: 59 HSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 203 PYQCDICNATFIYPEHFKKHRRIHTGEKPYVCEV 236
P++C++C F + K H R HTG KPY C+
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKT 41
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 71 FVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+ C ECGK+F +L H HTG +P+ C CGK+F++++ + H R HTG P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
+R + C++C KSF +L +H +TH+G K + C ECGKAF +L H VHTG+ P
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 173 KRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
+RY C C K+F L H + HTGE+PY+CD C FI H H R+HTG P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQF 136
R + C CGKSF +++ H RTHTGEKPY+C+ CG F
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGS 68
R Y+C C K+F H THT K P+ C++C K+F + +L+ H + H+GS
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEK-PYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 202 RPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
R Y+CD C +F + KHRR HTGEKPY C+
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCD 50
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 1 MEDHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTH 36
+ H +HTG +PY+C C K F+ ++HL+ H
Sbjct: 34 LSKHRRTHTGEKPYKCDECGKAFIQ----RSHLIGH 65
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 69 KDFVCT--ECGKAFGTLRNLEVHLAVHTGNRPFICRV--CGKSFVRKAEVKDHERTHTGE 124
K ++C+ +CG A+ L+ HL+ HTG +PF C+ C K F + H THTGE
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 125 KPYQCEFCGAQFRF 138
K + C+ G RF
Sbjct: 62 KNFTCDSDGCDLRF 75
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 19 CKKTFVSKYTYKAHLVTHTDRKRPFSC--EKCDKSFYTQQNLVQHEKTHSGSKDFVCTE- 75
C + + +AHL HT K PF C E C+K F + +L +H TH+G K+F C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEK-PFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 69
Query: 76 -CGKAFGTLRNLEVHL 90
C F T N++ H
Sbjct: 70 GCDLRFTTKANMKKHF 85
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 173 KRYPCT--SCPKAFKRRRLLDYHIKAAHTGERPYQC--DICNATFIYPEHFKKHRRIHTG 228
KRY C+ C A+ + L H+ + HTGE+P+ C + C F H +H HTG
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHL-SKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG 60
Query: 229 EKPYVCE 235
EK + C+
Sbjct: 61 EKNFTCD 67
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 1 MEDHLVSHTGARPYECKT--CKKTFVSKYTYKAHLVTHTDRKRPFSCEK--CDKSFYTQQ 56
++ HL HTG +P+ CK C+K F S + H +THT K F+C+ CD F T+
Sbjct: 21 LQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN-FTCDSDGCDLRFTTKA 79
Query: 57 NLVQH 61
N+ +H
Sbjct: 80 NMKKH 84
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHT 122
K + C ECGKAF L H VHTG +P+ C CGK+F + + + +H+R HT
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHT 94
++P+ C +C K+F LVQH++ H+G K + C ECGKAF L H +HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 172 DKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHT 227
+K Y C C KAF R +L H + HTGE+PY+C C F H+RIHT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQF 136
+P+ C CGK+F R + + H+R HTGEKPY+C CG F
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAF 52
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHS 66
+PY C C K F H HT K P+ C +C K+F L+ H++ H+
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEK-PYKCLECGKAFSQNSGLINHQRIHT 66
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCEVRLAVFYYVTCLFN 249
E+PY C C F +H+R+HTGEKPY C F + L N
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLIN 60
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 20/77 (25%)
Query: 124 EKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKA 183
EKPY C CG F S+ S L H+R H +K Y C C KA
Sbjct: 12 EKPYGCVECGKAF-------------------SRSSILVQHQR-VHTGEKPYKCLECGKA 51
Query: 184 FKRRRLLDYHIKAAHTG 200
F + L H + +G
Sbjct: 52 FSQNSGLINHQRIHTSG 68
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 1 MEDHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTD 38
+ H HTG +PY+C C K F H HT
Sbjct: 30 LVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQF 136
+PF CR+C ++F R + H RTHTGEKP+ C+ CG +F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDH 117
K F C C + F +L H+ HTG +PF C +CG+ F R E K H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 173 KRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRI 225
K + C C + F R L HI+ HTGE+P+ CDIC F + K+HR I
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 202 RPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCEV 236
+P+QC IC F +H H R HTGEKP+ C++
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 36
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 41 RPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFG 81
+PF C C ++F +L H +TH+G K F C CG+ F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSF 52
+P++C+ C + F H+ THT K PF+C+ C + F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEK-PFACDICGRKF 41
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAH 32
H+ +HTG +P+ C C + F K H
Sbjct: 22 HIRTHTGEKPFACDICGRKFARSDERKRH 50
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 66 SGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEK 125
G ++C C +++ L +L H +H+ + + CR C K F HE HTGE+
Sbjct: 18 DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77
Query: 126 PYQCEFCGAQF 136
YQC CG F
Sbjct: 78 RYQCLACGKSF 88
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 10 GARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
G Y C CK+++V + + H H+ K+ + C C+K F + +HE H+G +
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKK-YPCRYCEKVFPLAEYRTKHEIHHTGER 77
Query: 70 DFVCTECGKAFGTLRNLEVHL-AVHTGN 96
+ C CGK+F + + H+ +VH+ +
Sbjct: 78 RYQCLACGKSFINYQFMSSHIKSVHSQD 105
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%)
Query: 37 TDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGN 96
D + + C C +S+ +L +H HS K + C C K F H HTG
Sbjct: 17 VDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGE 76
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
R + C CGKSF+ + H ++ + P
Sbjct: 77 RRYQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 20/107 (18%)
Query: 95 GNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCF 154
G +IC VC +S+V ++ H H+ EK Y C +C F I
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH------ 72
Query: 155 LSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGE 201
H ++RY C +C K+F + + HIK+ H+ +
Sbjct: 73 --------------HTGERRYQCLACGKSFINYQFMSSHIKSVHSQD 105
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 152 LCFLSQRSNLQSHKRATHFN----DKRYPCTSCPKAFKRRRLLDYHIK--AAHTGERPYQ 205
+C + +RS + HFN +K+YPC C K F L +Y K HTGER YQ
Sbjct: 24 ICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFP---LAEYRTKHEIHHTGERRYQ 80
Query: 206 CDICNATFI 214
C C +FI
Sbjct: 81 CLACGKSFI 89
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 1 MEDHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQ 60
+ H H+ + Y C+ C+K F H + HT +R + C C KSF Q +
Sbjct: 38 LRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR-YQCLACGKSFINYQFMSS 96
Query: 61 HEKT 64
H K+
Sbjct: 97 HIKS 100
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 175 YPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
Y C C +++ L H H+ E+ Y C C F E+ KH HTGE+ Y C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNI-HSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQC 81
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 191 DYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCEVRLAVF 241
D H + G Y C +C +++ ++H IH+ EK Y C VF
Sbjct: 10 DDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVF 60
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 19 CKKTFVSKYTYKAHLVTHTDRKRPFSC--EKCDKSFYTQQNLVQHEKTHSGSKDFVCTEC 76
C K + KAHL THT K P+ C E CD F L +H + H+G+K F C C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEK-PYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 77 GKAFGTLRNLEVHLAVH 93
++F +L +H+ H
Sbjct: 82 NRSFSRSDHLALHMKRH 98
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 48 CDKSFYTQQNLVQHEKTHSGSKDFVCTE--CGKAFGTLRNLEVHLAVHTGNRPFICRVCG 105
C K + +L H +TH+G K + CT C F L H HTG +PF C VC
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 106 KSFVRKAEVKDHERTH 121
+SF R + H + H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 165 KRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQC--DICNATFIYPEHFKKH 222
KR H+ D YP C K + + L H++ HTGE+PY+C + C+ F + +H
Sbjct: 12 KRRIHYCD--YP--GCTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRH 66
Query: 223 RRIHTGEKPYVCEV 236
R HTG KP+ C V
Sbjct: 67 YRKHTGAKPFQCGV 80
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 18/92 (19%)
Query: 104 CGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQS 163
C K + + + +K H RTHTGEKPY+C + G +RF ++ L
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF-----------------ARSDELTR 65
Query: 164 HKRATHFNDKRYPCTSCPKAFKRRRLLDYHIK 195
H R H K + C C ++F R L H+K
Sbjct: 66 HYRK-HTGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 140 GSSGTESID----KLLLC-------FLSQRSNLQSHKRATHFNDKRYPCT--SCPKAFKR 186
GSSG+ D ++ C ++ S+L++H R TH +K Y CT C F R
Sbjct: 1 GSSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFAR 59
Query: 187 RRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIH 226
L H + HTG +P+QC +CN +F +H H + H
Sbjct: 60 SDELTRHYRK-HTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDR 39
H HTGA+P++C C ++F + HL H R
Sbjct: 66 HYRKHTGAKPFQCGVCNRSF----SRSDHLALHMKR 97
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 18/92 (19%)
Query: 104 CGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQS 163
CGK++ + + +K H RTHTGEKPY C++ G ++F ++ L
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKF-----------------ARSDELTR 56
Query: 164 HKRATHFNDKRYPCTSCPKAFKRRRLLDYHIK 195
H R H + + C C +AF R L H+K
Sbjct: 57 HYRK-HTGHRPFQCQKCDRAFSRSDHLALHMK 87
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 48 CDKSFYTQQNLVQHEKTHSGSKDFVCTE--CGKAFGTLRNLEVHLAVHTGNRPFICRVCG 105
C K++ +L H +TH+G K + C CG F L H HTG+RPF C+ C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 106 KSFVRKAEVKDHERTH 121
++F R + H + H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 19 CKKTFVSKYTYKAHLVTHTDRKRPFSC--EKCDKSFYTQQNLVQHEKTHSGSKDFVCTEC 76
C KT+ KAHL THT K P+ C + C F L +H + H+G + F C +C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEK-PYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Query: 77 GKAFGTLRNLEVHLAVH 93
+AF +L +H+ H
Sbjct: 73 DRAFSRSDHLALHMKRH 89
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 1 MEDHLVSHTGARPYECKT--CKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNL 58
++ HL +HTG +PY C C F H HT RPF C+KCD++F +L
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH-RPFQCQKCDRAFSRSDHL 82
Query: 59 VQHEKTH 65
H K H
Sbjct: 83 ALHMKRH 89
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 179 SCPKAFKRRRLLDYHIKAAHTGERPYQCDI--CNATFIYPEHFKKHRRIHTGEKPYVCE 235
C K + + L H++ HTGE+PY CD C F + +H R HTG +P+ C+
Sbjct: 13 GCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ 70
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 156 SQRSNLQSHKRATHFNDKRYPCT--SCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATF 213
++ S+L++H R TH +K Y C C F R L H + HTG RP+QC C+ F
Sbjct: 19 TKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKCDRAF 76
Query: 214 IYPEHFKKHRRIH 226
+H H + H
Sbjct: 77 SRSDHLALHMKRH 89
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 204 YQCDI--CNATFIYPEHFKKHRRIHTGEKPYVCE 235
+ CD C T+ H K H R HTGEKPY C+
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCD 40
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 18/92 (19%)
Query: 104 CGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQS 163
CGK++ + + +K H RTHTGEKPY C++ G ++F ++ L
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKF-----------------ARSDELTR 55
Query: 164 HKRATHFNDKRYPCTSCPKAFKRRRLLDYHIK 195
H R H + + C C +AF R L H+K
Sbjct: 56 HYRK-HTGHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 48 CDKSFYTQQNLVQHEKTHSGSKDFVCTE--CGKAFGTLRNLEVHLAVHTGNRPFICRVCG 105
C K++ +L H +TH+G K + C CG F L H HTG+RPF C+ C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 106 KSFVRKAEVKDHERTH 121
++F R + H + H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 19 CKKTFVSKYTYKAHLVTHTDRKRPFSC--EKCDKSFYTQQNLVQHEKTHSGSKDFVCTEC 76
C KT+ KAHL THT K P+ C + C F L +H + H+G + F C +C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEK-PYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 77 GKAFGTLRNLEVHLAVH 93
+AF +L +H+ H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 1 MEDHLVSHTGARPYECKT--CKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNL 58
++ HL +HTG +PY C C F H HT RPF C+KCD++F +L
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH-RPFQCQKCDRAFSRSDHL 81
Query: 59 VQHEKTH 65
H K H
Sbjct: 82 ALHMKRH 88
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 179 SCPKAFKRRRLLDYHIKAAHTGERPYQCDI--CNATFIYPEHFKKHRRIHTGEKPYVCE 235
C K + + L H++ HTGE+PY CD C F + +H R HTG +P+ C+
Sbjct: 12 GCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ 69
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 156 SQRSNLQSHKRATHFNDKRYPCT--SCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATF 213
++ S+L++H R TH +K Y C C F R L H + HTG RP+QC C+ F
Sbjct: 18 TKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKCDRAF 75
Query: 214 IYPEHFKKHRRIH 226
+H H + H
Sbjct: 76 SRSDHLALHMKRH 88
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 204 YQCDI--CNATFIYPEHFKKHRRIHTGEKPYVCE 235
+ CD C T+ H K H R HTGEKPY C+
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCD 39
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 99 FICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQF 136
F+C VC ++F R+ +K H R+HT EKPY C C F
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAF 40
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 43 FSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLA--VHTGN 96
F CE C ++F Q++L +H ++H+ K + C C +AF T R+L + A +H+GN
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAF-TRRDLLIRHAQKIHSGN 57
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 175 YPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKH-RRIHTG 228
+ C C +AF R+ L H ++ HT E+PY C +CN F + +H ++IH+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 70 DFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDH-ERTHTG 123
FVC C +AF +L+ H HT +P+ C +C ++F R+ + H ++ H+G
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 204 YQCDICNATFIYPEHFKKHRRIHTGEKPYVCEV 236
+ C++C F EH K+H R HT EKPY C +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGL 35
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 155 LSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTG 200
+++ +L+ H R +H N+K YPC C +AF RR LL H + H+G
Sbjct: 12 FARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 14 YECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQH-EKTHSGS 68
+ C+ C + F + K H +HT+ K P+ C C+++F + L++H +K HSG+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK-PYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 76 CGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHT 122
C + F L H+ +HTG +PF CR+C ++F R + H RTHT
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 39 RKRPFSC--EKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHT 94
+ RP++C E CD+ F L +H + H+G K F C C + F +L H+ HT
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 176 PCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHT 227
P SC + F R L HI+ HTG++P+QC IC F +H H R HT
Sbjct: 23 PVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 97 RPFICRV--CGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQF 136
RP+ C V C + F R E+ H R HTG+KP+QC C F
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 189 LLDYHIKAAHTGERPYQCDI--CNATFIYPEHFKKHRRIHTGEKPYVCEVRLAVF 241
LL+Y + RPY C + C+ F + +H RIHTG+KP+ C + + F
Sbjct: 9 LLNYVVPKM----RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHT 37
H+ HTG +P++C+ C + F H+ THT
Sbjct: 40 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY C+ C +FI H +HRRIHTGEKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+IC CGKSF++K+ + H R HTGEKP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K ++C ECGK+F +L H +HTG +P
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C +C KSF + +L +H + H+G K
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEK 39
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+CD+C+ +F Y H+RIHTGEKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 96 NRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C VC KSF + + H+R HTGEKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C+ C KSF +L H++ H+G K
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 96 NRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C+VC K+F +KA + H++THTGEKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+C +C+ F H +H++ HTGEKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C+ C K+F + +L QH+KTH+G K
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
+PYECK C K F K H THT K
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 172 DKRYPCTSCPKAFKRRRLLDYHIKAAHTGERP 203
+K Y C C KAF ++ L H K HTGE+P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQK-THTGEKP 40
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Query: 86 LEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRF 138
+ H+ H G CGK++ + + +K H RTHTGEKP+ C + G + RF
Sbjct: 15 IRSHICSHPG--------CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRF 59
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 76 CGKAFGTLRNLEVHLAVHTGNRPFIC--RVCGKSFVRKAEVKDHERTH 121
CGK + +L+ H HTG +PF C + C + F R E+ H RTH
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
Query: 1 MEDHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC--EKCDKSFYTQQNL 58
+ H+ SH G C KT+ KAH THT K PFSC + C++ F L
Sbjct: 15 IRSHICSHPG--------CGKTYFKSSHLKAHTRTHTGEK-PFSCSWKGCERRFARSDEL 65
Query: 59 VQHEKTH 65
+H +TH
Sbjct: 66 SRHRRTH 72
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 209 CNATFIYPEHFKKHRRIHTGEKPYVCEVR 237
C T+ H K H R HTGEKP+ C +
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWK 53
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 180 CPKAFKRRRLLDYHIKAAHTGERPYQCDI--CNATFIYPEHFKKHRRIH 226
C K + + L H + HTGE+P+ C C F + +HRR H
Sbjct: 25 CGKTYFKSSHLKAHTRT-HTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 48 CDKSFYTQQNLVQHEKTHSGSKDFVCT--ECGKAFGTLRNLEVHLAVH 93
C K+++ +L H +TH+G K F C+ C + F L H H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
+RPF C C K++ L +H + H G + C ECGK F + HL VH N+P
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ-NKP 59
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGE 124
+ F C CGK + L H H G RP C CGK F ++EV H + H +
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFR 137
RPF C CGK++ + + H R H G +P C CG FR
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFR 43
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTH 65
RP+ C C KT+ H H RP SC +C K F Q + +H K H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLG-YRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
ERP+ C+ C T+ +HRR H G +P C
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSC 35
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 1 MEDHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDR 39
+ H +H G RP C C K F + HL H ++
Sbjct: 20 LSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
ERP++C+ C +FI H +H+RIHTGEKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
RP C CGKSF++ A + H+R HTGEKP
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+RP C +C KSF +L+QH++ H+G K
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEK 39
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 73 CTECGKAFGTLRNLEVHLAVHTGNRP 98
C ECGK+F +L H +HTG +P
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 23/38 (60%)
Query: 95 GNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFC 132
G+ C CGK F + H RTHTGEKPY+CEFC
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFC 38
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 67 GSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDH-ERTH 121
GS C+ CGK F + L +HL HTG +P+ C C + +K ++ H ER H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 10 GARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTH 65
G+ EC C K F S Y HL THT K P+ CE C+ + + +L H + H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEK-PYKCEFCEYAAAQKTSLRYHLERH 55
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQCDIC 209
C+ C K F+ L+ H++ HTGE+PY+C+ C
Sbjct: 7 CSYCGKFFRSNYYLNIHLRT-HTGEKPYKCEFC 38
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 200 GERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
G +C C F + H R HTGEKPY CE
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCE 36
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 1 MEDHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTH 36
+ HL +HTG +PY+C+ C+ K + + HL H
Sbjct: 20 LNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 45 CEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVH 93
C C K F + L H +TH+G K + C C A +L HL H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
RP+IC VCGK+F ++ + H++ HTGEKP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
ERPY C +C F + KH++IHTGEKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+RP+ C C K+F + NL++H+K H+G K
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
+ ++CT CGKAF NL H +HTG +P
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 172 DKRYPCTSCPKAFKRRRLLDYHIKAAHTGERP 203
++ Y CT C KAF R L H K HTGE+P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQK-IHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY C+ C FI+ ++H+RIHTGEKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGK+F+ +++++H+R HTGEKP
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C ECGKAF L+ H +HTG +P
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P++CE+C K+F L +H++ H+G K
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 94 TGNRPFICRVCGKSFVRKAEVKDHERTHTGE 124
+G +P++C CGK+F+RK+ HER HTGE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHTGE 229
+ +GE+PY C C FI HF H RIHTGE
Sbjct: 3 SGSSGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 66 SGSKDFVCTECGKAFGTLRNLEVHLAVHTG 95
SG K +VCTECGKAF + H +HTG
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTG 35
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 37 TDRKRPFSCEKCDKSFYTQQNLVQHEKTHSG 67
+ ++P+ C +C K+F + + + HE+ H+G
Sbjct: 5 SSGEKPYVCTECGKAFIRKSHFITHERIHTG 35
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 9 TGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFS 44
+G +PY C C K F+ K + H HT P S
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGESGPSS 41
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 96 NRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C +CGKSF +K+++ H++ HTGEKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+C IC +F H++IHTGEKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C+ CGK+F L VH +HTG +P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
+PYEC C K+F K H HT K
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 172 DKRYPCTSCPKAFKRRRLLDYHIKAAHTGERP 203
+K Y C+ C K+F ++ L H + HTGE+P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVH-QQIHTGEKP 40
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C C KSF + L H++ H+G K
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEK 39
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
++ T E+P++CD C+ +F HR IHTGEKP
Sbjct: 5 SSGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 94 TGNRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
T +PF C C KSF +++ + H HTGEKP
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++PF C+ CDKSF + L H H+G K
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 7 SHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
S T +P+ C TC K+F + +H + HT K
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGK+F +KA + H+R HTGEKP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+C C F + +H+RIHTGEKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C ECGKAF NL H +HTG +P
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C +C K+F + NL QH++ H+G K
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEK 39
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 176 PCT--SCPKAFKRRRLLDYHIKAAHTGERPYQCD--ICNATFIYPEHFKKHRRIHTGEKP 231
PC C + F R+ L++H K H ++ + C C +F + +H K+H ++H+ +
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD 68
Query: 232 YVCE 235
Y+CE
Sbjct: 69 YICE 72
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 48 CDKSFYTQQNLVQHEK-THSGSKDFVCTE--CGKAFGTLRNLEVHLAVHTGNRPFICRVC 104
C + F +Q L H+K H K F C E CGK+F ++L+ H+ +H+ R +IC
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 105 GKS 107
G S
Sbjct: 75 GPS 77
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 66 SGSKDFVCT--ECGKAFGTLRNLEVHLAV-HTGNRPFICR--VCGKSFVRKAEVKDHERT 120
SGS C CG+ F + L H H + F C CGKSF K +K+H +
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 121 HTGEKPYQCEFCG 133
H+ + Y CEF G
Sbjct: 63 HSDTRDYICEFSG 75
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 7 SHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEK--CDKSFYTQQNLVQHEKT 64
S + P + C + F ++ H ++ FSC + C KSF +++L +H K
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 65 HSGSKDFVCTECGKAFG 81
HS ++D++C G + G
Sbjct: 63 HSDTRDYICEFSGPSSG 79
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 140 GSSGTESID-KLLLC--FLSQRSNLQSHKRATHFNDKRYPC--TSCPKAFKRRRLLDYHI 194
GSSG+ + C S R L HK+ H + K + C +C K+F ++ L H+
Sbjct: 1 GSSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
Query: 195 KAAHTGERPYQCDICNAT 212
K H+ R Y C+ +
Sbjct: 61 K-LHSDTRDYICEFSGPS 77
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGK+F +K+ + H+RTHTGEKP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY C+ C TF H+R HTGEKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
+PY C C KTF K AH THT K
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C ECGK F L H HTG +P
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C +C K+F + L H++TH+G K
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 172 DKRYPCTSCPKAFKRRRLLDYHIKAAHTGERP 203
+K Y C C K F ++ +L H + HTGE+P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQR-THTGEKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 96 NRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P++C CGK+F AE+ H+R HTGEKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY CD C F +H+RIHTGEKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K +VC CGKAFG L H +HTG +P
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C+ C K+F LV+H++ H+G K
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+C+ C F H +HR IHTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGK F + + + H HTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C ECGK F +L H +HTG +P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C +C K F +L +H H+G K
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEK 39
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+ Y+CD+C F H + H+R+HTGEKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 99 FICRVCGKSFVRKAEVKDHERTHTGEKP 126
+ C VCGK F + + ++ H+R HTGEKP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 71 FVCTECGKAFGTLRNLEVHLAVHTGNRP 98
+ C CGK F +L+ H VHTG +P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+CD+C F + +H+R+H+GEKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 96 NRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C VC K+F A + H+R H+GEKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C+ C K+F +L QH++ HSG K
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEK 39
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+C+ C F H +HRR+HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGK F + + + H R HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C ECGK F +L H VHTG +P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C +C K F +L +H + H+G K
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGK 39
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGKSF++K+++ H+R HTGE P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+C C +FI H+RIHTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C++CGK+F L VH +HTG P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHT 37
+PYEC C K+F+ K H HT
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHT 36
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSG 67
++P+ C C KSF + L H++ H+G
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTG 37
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+C+ C F H H RIHTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGK F + + + +H R HTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C ECGK F +L H +HTG +P
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C +C K F +L H + H+G K
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 99 FICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGS 141
+IC CG + + +K H RTHT +PY C +C F+ KG+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGN 44
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 14 YECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
Y C+ C K H+ THTD RP+ C C+ SF T+ NL +H K+ + SK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDV-RPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 71 FVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERT 120
++C ECG L+ H+ HT RP+ C C SF K + H ++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 174 RYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRR 224
+Y C C K+ +L HI+ HT RPY C CN +F + KH +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 43 FSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHL 90
+ CE+C L +H +TH+ + + CT C +F T NL H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 1 MEDHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKR 41
++ H+ +HT RPY C C +F +K H+ + K+
Sbjct: 17 LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 94 TGNRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+G +P+ C+ CGKSF ++ + HER HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
+ +GE+PYQC C +F H R+HTG P
Sbjct: 3 SGSSGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 66 SGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
SG K + C ECGK+F +L VH +HTG+ P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 35 THTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGS 68
+ + ++P+ C++C KSF + +L HE+ H+GS
Sbjct: 3 SGSSGEKPYQCKECGKSFSQRGSLAVHERLHTGS 36
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 122 TGEKPYQCEFCGAQFRFKGS 141
+GEKPYQC+ CG F +GS
Sbjct: 6 SGEKPYQCKECGKSFSQRGS 25
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 9 TGARPYECKTCKKTFVSKYTYKAHLVTHTD 38
+G +PY+CK C K+F + + H HT
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTG 35
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 173 KRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDI 208
K Y C SC K F R L+ HIK HT ERP++C +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 96 NRPFICRVCGKSFVRKAEVKDH-ERTHTGEKPYQCEF 131
+P+IC+ CGK F R + H ++ HT E+P++C+
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 202 RPYQCDICNATFIYPEHFKKH-RRIHTGEKPYVCEVRLA 239
+PY C C F P+H H +++HT E+P+ C+V ++
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 68 SKDFVCTECGKAFGTLRNLEVHL-AVHTGNRPFICRV 103
K ++C CGK F +L H+ VHT RP C+V
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 40.0 bits (92), Expect = 0.001, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 94 TGNRPFICRVCGKSFVRKAEVKDHERTHTGE 124
+G +P++C CGK+F K+++ HER HTGE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 66 SGSKDFVCTECGKAFGTLRNLEVHLAVHTG 95
SG K +VC ECGKAFG L +H +HTG
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 33.1 bits (74), Expect = 0.19, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHTGE 229
+ +G++PY C+ C F H RIHTGE
Sbjct: 3 SGSSGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 31.6 bits (70), Expect = 0.46, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSG 67
++P+ C +C K+F + L+ HE+ H+G
Sbjct: 8 QKPYVCNECGKAFGLKSQLIIHERIHTG 35
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+C+ C F H +HR IHTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGK F + + + H HTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C ECGK F +L H +HTG +P
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C +C K F +LV+H H+G K
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEK 39
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 98 PFICRVCGKSFVRKAEVKDHERTHTGEKP 126
P+ C CGK+F RK ++ H+RTH GEKP
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+ P+ C +C K+F + L+ H++TH+G K
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEK 39
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E PY+C C F H+R H GEKP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 13 PYECKTCKKTFVSKYTYKAHLVTHTDRK 40
PYEC C K F KY +H TH K
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEK 39
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 71 FVCTECGKAFGTLRNLEVHLAVHTGNRP 98
+ C ECGKAF L H H G +P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+P+QC+ C F H H+R+HTGEKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+PF C CGK F + + + H+R HTGEKP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K F C ECGK F +L H VHTG +P
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++PF CE+C K F +L H++ H+G K
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+PF C CGK F + +++ H+R HTGEKP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+P++C+ C F H+R+HTGEKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K F C ECGK F L H VHTG +P
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++PF CE+C K F L H++ H+G K
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 96 NRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+PF C CGKSF +++ H+R HTGEKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+P++C C +F H+RIHTGEKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K F C ECGK+F L H +HTG +P
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++PF C +C KSF L H++ H+G K
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEK 39
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+C+ C F + + +H+RIHTGEKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGK F + + H+R HTGEKP
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C ECGK F L H +HTG +P
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
++PY+C+ C F H +HR IHTGEKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGK F + + + H HTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C ECGK F +L H +HTG +P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
K+P+ C +C K F +L +H H+G K
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEK 39
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+C C F H +H+R+HTGEKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 96 NRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C+ CGK+F + + H+R HTGEKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C ECGKAF +L H VHTG +P
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C++C K+F +L+QH++ H+G K
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEK 39
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 7 SHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRK---RPFSCEKCDKSFYTQQNLVQHEK 63
+HTG +PY C C KTF K H + D F C KC K+F + + +H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Query: 64 THSGSKDFVCTECGKAFG 81
+G G + G
Sbjct: 69 NCAGPDGVEGENSGPSSG 86
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 63 KTHSGSKDFVCTECGKAFGTLRNLEVHLA-VHTGN---RPFICRVCGKSFVRKAEVKDHE 118
+TH+G K + C+ C K F + L++H H N F+C CGK+F R+ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 119 RTHTGEKPYQCEFCG 133
G + E G
Sbjct: 68 DNCAGPDGVEGENSG 82
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 168 THFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGE---RPYQCDICNATFIYPEHFKKH 222
TH +K Y C+ C K F++++LLD H K H + C C TF +H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 22/79 (27%)
Query: 119 RTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATH---FNDKRY 175
RTHTGEKPY C C FR Q+ L H + H F +
Sbjct: 8 RTHTGEKPYACSHCDKTFR-------------------QKQLLDMHFKRYHDPNFVPAAF 48
Query: 176 PCTSCPKAFKRRRLLDYHI 194
C+ C K F RR + H
Sbjct: 49 VCSKCGKTFTRRNTMARHA 67
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+C+ C F +H+RIHTGEKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGK+F + +++ H+R HTGEKP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C ECGKAF L H +HTG +P
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C +C K+F L +H++ H+G K
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEK 39
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 94 TGNRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+G +P +C CGK+F + + + H+R H+GEKP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
+ +G++P C+ C TF KH+RIH+GEKP
Sbjct: 3 SGSSGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 66 SGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
SG K VC ECGK F L H +H+G +P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 35 THTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+ + K+P C +C K+F L +H++ HSG K
Sbjct: 3 SGSSGKKPLVCNECGKTFRQSSCLSKHQRIHSGEK 37
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++PF C +C K+F T+ NL+ H++TH+G K
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEK 39
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K F C+EC KAF T NL VH HTG +P
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+PF C C K+F K+ + H+RTHTGEKP
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+P++C C F + H+R HTGEKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
+P+EC C+K F +K H THT K
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEK 39
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 71 FVC--TECGKAFGTLRNLEVHLAVHTGNRPFIC--RVCGKSFVRKAEVKDHERTHTG--- 123
+VC CGKAF L+VH HT P+ C C K F + +K HE+ H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 124 EKPYQCEFCGAQF 136
+K C F G +
Sbjct: 62 KKDDSCSFVGKTW 74
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 179 SCPKAFKRRRLLDYHIKAAHTGERPYQC--DICNATFIYPEHFKKHRRIHTG 228
+C KAFK+ L H + +HT + PY+C + C+ F P K+H ++H G
Sbjct: 8 NCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 17 KTCKKTFVSKYTYKAHLVTHTDRKRPFSC--EKCDKSFYTQQNLVQHEKTHSG---SKDF 71
+ C K F K H +HT ++ P+ C E CDK F L +HEK H+G KD
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHT-QQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDD 65
Query: 72 VCTECGKAF 80
C+ GK +
Sbjct: 66 SCSFVGKTW 74
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 104 CGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKL 150
CGK+F + ++K H+ +HT + PY+C G RF S + +K+
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV 55
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+C+ C F H H+RIHTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGK F + + + +H+R HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C ECGK F +L H +HTG +P
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C +C K F +L H++ H+G K
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVK 39
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 71 FVC--TECGKAFGTLRNLEVHLAVHTGNRPFIC--RVCGKSFVRKAEVKDHERTHTG--- 123
+VC CGKAF L+VH HT P+ C C K F + +K HE+ H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 124 EKPYQCEFCGAQF 136
+K C F G +
Sbjct: 62 KKDDSCSFVGKTW 74
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 179 SCPKAFKRRRLLDYHIKAAHTGERPYQC--DICNATFIYPEHFKKHRRIHTG 228
+C KAFK+ L H + +HT + PY+C + C+ F P K+H ++H G
Sbjct: 8 NCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 17 KTCKKTFVSKYTYKAHLVTHTDRKRPFSC--EKCDKSFYTQQNLVQHEKTHSG---SKDF 71
+ C K F K H +HT ++ P+ C E CDK F L +HEK H+G KD
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHT-QQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDD 65
Query: 72 VCTECGKAF 80
C+ GK +
Sbjct: 66 SCSFVGKTW 74
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 104 CGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKL 150
CGK+F + ++K H+ +HT + PY+C G RF S + +K+
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV 55
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 94 TGNRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+G +P+ C CGK+F K+ + H RTHTGEKP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 66 SGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
SG K + C+ECGKAF + L +H+ HTG +P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
+ +G +PY C C F + H R HTGEKP
Sbjct: 3 SGSSGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 41 RPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+P+ C +C K+F ++ L+ H +TH+G K
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 9 TGARPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
+G +PY C C K F SK H+ THT K
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 173 KRYPCTSCPKAFKRRRLLDYHIKAAHTGERP 203
K Y C+ C KAF+ + L H++ HTGE+P
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMR-THTGEKP 38
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+C+ C A F+ H + H IHTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 96 NRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CG FV+ A ++ H HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTD 38
+PY+C+TC FV +AH++ HT
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTG 36
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C CG F + +L H+ +HTG+ P
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 124 EKPYQCEFCGAQF 136
EKPY+CE CGA+F
Sbjct: 9 EKPYKCETCGARF 21
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 97 RPFIC--RVCGKSFVRKAEVKDHERTHTGEK 125
RPF+C CGK F R E++ H+RTHTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 202 RPYQC--DICNATFIYPEHFKKHRRIHTGEK 230
RP+ C C F + ++H+R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 199 TGERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
T E P++C+ C TF + H KH+ IH GE P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 98 PFICRVCGKSFVRKAEVKDHERTHTGEKP 126
PF C CGK+F A + H+ H GE P
Sbjct: 12 PFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 66 SGSKD--FVCTECGKAFGTLRNLEVHLAVHTGNRP 98
SG+K+ F C ECGK F +L H +H G P
Sbjct: 6 SGTKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 202 RPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
+PYQC+ C F +H+R+HTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGK+F + +++ H+R HTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C ECGKAF L H VHTG +P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 41 RPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+P+ C +C K+F L +H++ H+G K
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+PF C CGKS+ ++ + H+R HTGEKP
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+P++C C ++ H +H+R+HTGEKP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++PF C +C KS+ + +L QH++ H+G K
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K F C ECGK++ +L H VHTG +P
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 94 TGNRPFICRVCGKSFVRKAEVKDHERTHTGE 124
+G P+ C CGK+F RK ++ H+RTH GE
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHTGE 229
+ +GE PY+C C F + H+R H GE
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 35 THTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSG 67
+ + + P+ C +C K+F + L+ H++TH+G
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAG 35
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 9 TGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFS 44
+G PYEC C K F K +H TH P S
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 66 SGSKDFVCTECGKAFGTLRNLEVHLAVHTG 95
SG + C+ECGKAF L H H G
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAG 35
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
ER ++C C F+ +F +HRRIHTGEKP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 101 CRVCGKSFVRKAEVKDHERTHTGEKP 126
C CGK F++ + H R HTGEKP
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+R C C K F N +QH + H+G K
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEK 39
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
++PY+C C TFI H +H+R+HTGE+
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEK 125
+P+ C+ C K+F++ + H+R HTGE+
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSKD 70
K+P+ C++C K+F +L QH++ H+G +
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGERS 40
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
+PYECK C+KTF+ H HT +
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+C +C F + + H+RIH+G+KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 96 NRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C VCGK+F + + H+R H+G+KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C+ CGKAF ++L VH +H+G +P
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C C K+F +Q+L H++ HSG K
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 172 DKRYPCTSCPKAFKRRRLLDYHIKAAHTGERP 203
+K Y C+ C KAF R+ L H + H+G++P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQR-IHSGKKP 40
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
+PYEC C K F + + H H+ +K
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 7 SHTGARPYECKTCKKTFVSKYTYKAHLVT-HTDRKRPFSCEKCDKSFYTQQNLVQH-EKT 64
+H+G +PYEC C F T K H++ HT+ F C CD + +L H K
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQ 68
Query: 65 HS 66
HS
Sbjct: 69 HS 70
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 18/85 (21%)
Query: 119 RTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCT 178
RTH+GEKPY+C C A+F G+ K+ + LQ H N ++ C
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTM------KMHI--------LQKHTE----NVAKFHCP 49
Query: 179 SCPKAFKRRRLLDYHIKAAHTGERP 203
C R+ L H++ H+ P
Sbjct: 50 HCDTVIARKSDLGVHLRKQHSYSGP 74
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKH 222
H+GE+PY+C IC+A F K H
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMH 34
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K ++C ECGKAF +L H +HTG +P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P++C CGK+F + + H+ HTGEKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 202 RPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
+PY C+ C F H+ IHTGEKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 41 RPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+P+ C +C K+F +L H+ H+G K
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
+ +GE+PY C+ C F + H+RIHTGEK
Sbjct: 3 SGSSGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 94 TGNRPFICRVCGKSFVRKAEVKDHERTHTGEK 125
+G +P+ C CGK F K+ + H+R HTGEK
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 66 SGSKDFVCTECGKAFGTLRNLEVHLAVHTGNR 97
SG K + C ECGK F + L VH +HTG +
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 35 THTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+ + ++P+ C +C K F ++ L+ H++ H+G K
Sbjct: 3 SGSSGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 9 TGARPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
+G +PY C C K F SK H HT K
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGE 229
E+PY C++C F+ H +H R+HT E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGE 124
+P+ C VCGK+FV A + H R HT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHS 66
++P+SC C K+F +L QH + H+
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHT 36
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
PFIC CGK F K + H++ HTGE+P
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 71 FVCTECGKAFGTLRNLEVHLAVHTGNRP 98
F+C+ECGK F NL +H +HTG RP
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+ PF C +C K F + NL+ H+K H+G +
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGER 39
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E P+ C C F + + H++IHTGE+P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 94 TGNRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+G R + C+ CGKSF +K + HER HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
+ +G+R Y+C C +F H RIHTG P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 66 SGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
SG + + C ECGK+F +L +H +HTG+ P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 35 THTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGS 68
+ + +R + C++C KSF + +L HE+ H+GS
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGS 36
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 94 TGNRPFICRVCGKSFVRKAEVKDHERTHTGE 124
+G +P+ C CGK+F K+++ H+RTHTGE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 66 SGSKDFVCTECGKAFGTLRNLEVHLAVHTG 95
SG K + CT+CGKAFG L +H HTG
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTG 35
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHTGE 229
+ +GE+PY+C C F H+R HTGE
Sbjct: 3 SGSSGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 9 TGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFS 44
+G +PYEC C K F K H THT P S
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGESGPSS 41
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 35 THTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSG 67
+ + ++P+ C C K+F + L+ H++TH+G
Sbjct: 3 SGSSGEKPYECTDCGKAFGLKSQLIIHQRTHTG 35
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+PF C CGK F ++ H+R+H+GEKP
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++PF CE+C K FYT H+++HSG K
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEK 39
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+P++C+ C F H+R H+GEKP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K F C ECGK F T H H+G +P
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
+ +GE+PY C+ C F + H+ +HTG KP
Sbjct: 3 SGSSGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 20/33 (60%)
Query: 66 SGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
SG K + C ECGKAF L VH VHTG +P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 94 TGNRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+G +P+ C CGK+F K+++ H+ HTG KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 35 THTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+ + ++P+SC +C K+F + L+ H+ H+G K
Sbjct: 3 SGSSGEKPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 122 TGEKPYQCEFCGAQFRFK 139
+GEKPY C CG F FK
Sbjct: 6 SGEKPYSCNECGKAFTFK 23
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 171 NDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERP 203
+K Y C C KAF + L H K HTG +P
Sbjct: 7 GEKPYSCNECGKAFTFKSQLIVH-KGVHTGVKP 38
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 9 TGARPYECKTCKKTFVSKYTYKAHLVTH 36
+G +PY C C K F T+K+ L+ H
Sbjct: 6 SGEKPYSCNECGKAF----TFKSQLIVH 29
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY C C +F + KH+R+H+GEKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C+ CGKSF + + H+R H+GEKP
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P++C++C KSF L++H++ HSG K
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEK 39
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C ECGK+F L H VH+G +P
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K F CTECGKAF L +H +HTG +P
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 99 FICRVCGKSFVRKAEVKDHERTHTGEKP 126
F C CGK+F RK+ + H++ HTGEKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 173 KRYPCTSCPKAFKRRRLLDYHIKAAHTGERP 203
K + CT C KAF R+ L H K HTGE+P
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQK-IHTGEKP 40
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 204 YQCDICNATFIYPEHFKKHRRIHTGEKP 231
++C C F H++IHTGEKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 43 FSCEKCDKSFYTQQNLVQHEKTHSGSK 69
F C +C K+F + L H+K H+G K
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEK 39
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 37.0 bits (84), Expect = 0.011, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 66 SGSKDFVCTECGKAFGTLRNLEVHLAVHTG 95
SG K +VC++CGKAF L VH +HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 34.3 bits (77), Expect = 0.069, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 94 TGNRPFICRVCGKSFVRKAEVKDHERTHTG 123
+G +P++C CGK+F K+++ H+ HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 32.0 bits (71), Expect = 0.36, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHTG 228
+ +GE+PY C C F + H+ IHTG
Sbjct: 3 SGSSGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 28.9 bits (63), Expect = 3.4, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSG 67
++P+ C C K+F + L+ H+ H+G
Sbjct: 8 EKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 28.9 bits (63), Expect = 3.7, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 122 TGEKPYQCEFCGAQFRFK 139
+GEKPY C CG F FK
Sbjct: 6 SGEKPYVCSDCGKAFTFK 23
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGE 124
+P+ C CGK+F+R +++ H+RTH+GE
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 39 RKRPFSCEKCDKSFYTQQNLVQHEKTHSG 67
R++P+ C +C K+F L+ H++THSG
Sbjct: 9 REKPYECSECGKAFIRNSQLIVHQRTHSG 37
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHTGE 229
++ T E+PY+C C FI H+R H+GE
Sbjct: 5 SSGTREKPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 7 SHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFS 44
S T +PYEC C K F+ H TH+ P S
Sbjct: 6 SGTREKPYECSECGKAFIRNSQLIVHQRTHSGESGPSS 43
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTG 95
K + C+ECGKAF L VH H+G
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSG 37
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 96 NRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
R + C CGK+F RK+ + H+R HTGEKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
ER Y+C C F H+RIHTGEKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
+ + C+ECGKAF L +H +HTG +P
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 172 DKRYPCTSCPKAFKRRRLLDYHIKAAHTGERP 203
++ Y C+ C KAF R+ L H + HTGE+P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQR-IHTGEKP 40
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+R + C +C K+F + L+ H++ H+G K
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEK 39
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+C +C F H +H +H+GE+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 96 NRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C+VCGK+F + + H H+GE+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C+ C K+F +LVQH HSG +
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGER 39
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C CGKAF +L H +VH+G RP
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY C+IC F + + K H RIHTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 96 NRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C +CG F +K H R HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C CG F L+ L+ HL +HTG+ P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 124 EKPYQCEFCGAQFR 137
EKPY CE CG +FR
Sbjct: 9 EKPYPCEICGTRFR 22
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+PF C+ CGK+F + + H R HTGEKP
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+P++C C F H H RIHTGEKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K F C ECGKAF +L HL +HTG +P
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++PF C++C K+F +L H + H+G K
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEK 39
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+PF C CGK F R++ + H + HTGEKP
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K F C ECGK F L VH +HTG +P
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 172 DKRYPCTSCPKAFKRRRLLDYHIKAAHTGERP 203
+K + C C K F RR L+ H K HTGE+P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHK-LHTGEKP 40
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+P++C C F H ++HTGEKP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++PF C +C K F + L H K H+G K
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEK 39
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 94 TGNRPFICRVCGKSFVRKAEVKDHERTHTGE 124
+G +P++C+ CGK+F + + + H R HTGE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHTGE 229
+ +GE+PY C C F HRR+HTGE
Sbjct: 3 SGSSGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 66 SGSKDFVCTECGKAFGTLRNLEVHLAVHTG 95
SG K +VC ECGKAF L +H VHTG
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 9 TGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFS 44
+G +PY C+ C K F H HT P S
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGESGPSS 41
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGK+F K+ + H RTH+GEKP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C+ECGKAF + L +H+ H+G +P
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C +C K+F ++ L+ H +THSG K
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY C C F + H R H+GEKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 172 DKRYPCTSCPKAFKRRRLLDYHIKAAHTGERP 203
+K Y C+ C KAF + L H++ H+GE+P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMR-THSGEKP 40
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
+PY C C K F SK H+ TH+ K
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C +CGKAF +L H A+HTG +P
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+C+ C F H+ IHTG+KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGK+F ++ + H+ HTG+KP
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C +C K+F + +L H+ H+G K
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 172 DKRYPCTSCPKAFKRRRLLDYHIKAAHTGERP 203
+K Y C C KAF R L H +A HTG++P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTH-QAIHTGKKP 40
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
+PYEC C K F + + H HT +K
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+P++CDIC +F +H +HT EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+PF C +CGKSF ++ + H HT EKP
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C ECGKAF NL H +HTG +P
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+C+ C F + H+ IHTGEKP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGK+F + + H+ HTGEKP
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C +C K+F NL H+ H+G K
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 172 DKRYPCTSCPKAFKRRRLLDYHIKAAHTGERP 203
+K Y C C KAF+ L H + HTGE+P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTH-QVIHTGEKP 40
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEK 125
+PF C+ C + F R +K H RTHTGEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 202 RPYQCDICNATFIYPEHFKKHRRIHTGEK 230
+P+QC C F +H K H R HTGEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 41 RPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+PF C+ C + F +L H +TH+G K
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
+P++CKTC++ F K H THT K
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 96 NRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
RP+ C CGK+F K+ + H R+HTGEKP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+RP+ C +C K+F T+ +L+ H ++H+G K
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEK 39
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
+RPY+C C F HRR HTGEKP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
+ + C ECGKAF T +L H HTG +P
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
RPYEC C K F +K + H +HT K
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEK 39
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+C C F H +H+ IHTGEKP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGK F R + + H+ HTGEKP
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C ECGK F +L H +HTG +P
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C +C K F +L +H+ H+G K
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEK 39
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+C C F H +HRRIHTG +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGK+F R + +H R HTG +P
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C+ECGKAF +L H +HTG RP
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSG 67
++P+ C +C K+F+ +L +H + H+G
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTG 37
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C ECGKAF +L +H A H+G +P
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGK+F ++ + H+ TH+GEKP
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C +C K+F + +L H+ THSG K
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 172 DKRYPCTSCPKAFKRRRLLDYHIKAAHTGERP 203
+K Y C C KAF+ R L H +A H+GE+P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIH-QATHSGEKP 40
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+C+ C F H+ H+GEKP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
+PY+C C K F ++ + H TH+ K
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEK 39
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEK 125
+PF C CGKSF K + H+R HTGEK
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSKD 70
++PF C C KSF + NLV H++ H+G K
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEKS 40
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNR 97
K F CT CGK+F NL H +HTG +
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
++P++C C +F + H+RIHTGEK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C +CGK + + NL++H VHTG RP
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ CEKC K + ++ NL H+K H+G +
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGK + K + H++ HTGE+P
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+C+ C + + H+++HTGE+P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 172 DKRYPCTSCPKAFKRRRLLDYHIKAAHTGERP 203
+K Y C C K + + LD H K HTGERP
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQK-VHTGERP 40
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 202 RPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
+ +QC C F H +H+RIHTGEKP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 101 CRVCGKSFVRKAEVKDHERTHTGEKP 126
C CG+ F K+ + H+R HTGEKP
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 68 SKDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
+K C ECG+ F +L H +HTG +P
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEK 125
+P+ C CGK+F RK+ + H+++HTGE+
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNR 97
K + C++CGKAF L +H HTG R
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 172 DKRYPCTSCPKAFKRRRLLDYHIKAAHTGER 202
+K Y C+ C KAF R+ L H + +HTGER
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIH-QQSHTGER 39
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
E+PY+C C F H++ HTGE+
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 22/28 (78%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSG 67
++P+ C +C K+F T+ NL+ H++TH+G
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFS 44
+PYEC C+K F +K H THT P S
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTG 95
K + C EC KAF T NL VH HTG
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGE 124
+P+ C C K+F K+ + H+RTHTGE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGE 229
E+PY+C+ C F + H+R HTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGE 124
+P++C CGK+F K+ + H RTHTGE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTG 95
K +VC ECGKAF + L +H HTG
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 41 RPFSCEKCDKSFYTQQNLVQHEKTHSG 67
+P+ C +C K+F ++ L+ H +TH+G
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFS 44
+PY C C K F SK H THT P S
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 99 FICRVCGKSFVRKAEVKDHERTHTGEKP 126
+ C CGK F R +++ H++ HTGEKP
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+ Y+C+ C F +H++IHTGEKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 172 DKRYPCTSCPKAFKRRRLLDYHIKAAHTGERP 203
+KRY C C K F R L H K HTGE+P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQK-IHTGEKP 40
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C ECGK F L H +HTG +P
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P CR CGKSF +++ H+R HTGE P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+P++C C +F + H+RIHTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K C ECGK+F L VH +HTG P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSG 67
++P C +C KSF L+ H++ H+G
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTG 37
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 42 PFSCEKCDKSFYTQQNLVQHEKTHS 66
PF C KCD+ F + LVQHE+TH+
Sbjct: 12 PFKCSKCDRVFTQRNYLVQHERTHA 36
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C ECGKAF NL H +HTG +P
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGK+F ++ + H++ HTGEKP
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+C C F + H++IHTGEKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C +C K+F + NL H+K H+G K
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 172 DKRYPCTSCPKAFKRRRLLDYHIKAAHTGERP 203
+K Y C C KAF R L H K HTGE+P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQK-IHTGEKP 40
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 96 NRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
R + C CGK+F++K+ + H+R H GEKP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
ER Y+C C FI H+RIH GEKP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
+ + C+ECGKAF L +H +H G +P
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+PF C CGK+F + H R HTGEKP
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+P+ C C F +HRRIHTGEKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K F C +CGKAF L H +HTG +P
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++PF C C K+F L QH + H+G K
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEK 39
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 99 FICRVCGKSFVRKAEVKDHERTHTGEKP 126
+ C+ CGKSF R + HER H+GEKP
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+ Y C C +F KH R+H+GEKP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 43 FSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++C++C KSF L++HE+ HSG K
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEK 39
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
+ +GE+ ++C C TF + H+RIHTGE P
Sbjct: 3 SGSSGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 66 SGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
SG K C+EC K F L +H +HTG P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNR 97
K + C ECGKAF T NL H +HTG +
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 39 RKRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+++P+ C +C K+F T+ NL H+ H+G K
Sbjct: 9 KEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
++ T E+PY+C C F + H+ IHTGEK
Sbjct: 5 SSGTKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 94 TGNRPFICRVCGKSFVRKAEVKDHERTHTGEK 125
T +P+ C CGK+F ++ + H+ HTGEK
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 7 SHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKR 41
S T +PY+C C K F ++ H V HT KR
Sbjct: 6 SGTKEKPYKCYECGKAFRTRSNLTTHQVIHTGEKR 40
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K ++C ECGKAF NL H +HT +P
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+IC CGK+F ++ + H++ HT +KP
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C +C K+F + NL++H+K H+ K
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQK 39
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY C C F + KH++IHT +KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C +CGKAF +L VH+ VHTG+ P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+CD C F H R+HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGK+F +K + H R HTG P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGS 68
++P+ C++C K+F + +L+ H + H+GS
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 172 DKRYPCTSCPKAFKRRRLLDYHIKAAHTGERP 203
+K Y C C KAF ++ L HI+ HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIR-VHTGSGP 39
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 94 TGNRPFICRVCGKSFVRKAEVKDHERTHT 122
+G RPF+CR+C +F KA H + HT
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHS 66
KRPF C C +F T+ N +H K H+
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 9 TGARPYECKTCKKTFVSKYTYKAHLVTHTD 38
+G RP+ C+ C F +K HL HTD
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 199 TGERPYQCDICNATFIYPEHFKKHRRIHT 227
+G+RP+ C IC + F + +H ++HT
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 66 SGSKDFVCTECGKAFGTLRNLEVHLAVHT 94
SG + FVC C AF T N HL VHT
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C ECGKAFG + H +HTG RP
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGK+F + H+R HTG++P
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+C C F +H+R+HTG++P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C +C K+F + QH++ H+G +
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQR 39
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 96 NRPFICRVCGKSFVRKAEVKDHERTHTGEK 125
+P+ C CGKSF K+ ++ H++ HTGE+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
E+PY+C C +F + + H++ HTGE+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNR 97
K + C++CGK+F L +H HTG R
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ C C KSF + L H+K H+G +
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C C K+F K+++ H+R+HTG KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 41 RPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+P+ C +C K+F + L+ H+++H+G K
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVK 39
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 202 RPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
+PY C C TF H+R HTG KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C++C K F L VH HTG +P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTG 123
RP+ C VCGK F K +++ H R HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 202 RPYQCDICNATFIYPEHFKKHRRIHTG 228
RPY C +C F + H R+HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTG 95
+ + C+ CGK F +E H VHTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 41 RPFSCEKCDKSFYTQQNLVQHEKTHSG 67
RP+SC C K F + + H + H+G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 98 PFICRVCGKSFVRKAEVKDHERTHTGEK 125
F+C VC ++F R+ +K H R+HT EK
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNEK 29
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 203 PYQCDICNATFIYPEHFKKHRRIHTGEK 230
+ C++C F E K+H R HT EK
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 98 PFICRVCGKSFVRKAEVKDHERTHTGEK 125
F+C VC ++F R+ +K H R+HT EK
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 203 PYQCDICNATFIYPEHFKKHRRIHTGEK 230
+ C++C F EH K+H R HT EK
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 96 NRPFICRVCGKSFVRKAEVKDHERTHTGEK 125
+P+ C CGK + R+ ++ H+R HTGEK
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 172 DKRYPCTSCPKAFKRRRLLDYHIKAAHTGER 202
+K Y C C K +KRR LD+H + HTGE+
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFH-QRVHTGEK 39
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNR 97
K + C ECGK + +L+ H VHTG +
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
E+PY+C C + H+R+HTGEK
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C ECGK F R+L H VHTG +P
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+PY+C+ C FI H +HTGEKP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 96 NRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGK F+ + ++ H HTGEKP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ CE+C K F +++L H H+G K
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEK 39
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 98 PFICRVCGKSFVRKAEVKDHERTHTGEK 125
P CR CGK F +K H R H+GEK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 42 PFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
P C +C K F T NL +H + HSG K
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 73 CTECGKAFGTLRNLEVHLAVHTGNR 97
C ECGK F T NL+ HL +H+G +
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 203 PYQCDICNATFIYPEHFKKHRRIHTGEK 230
P +C C F + K+H RIH+GEK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.16, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTG 123
+P+ C CGK+F+ K+ + HERTH G
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 32.7 bits (73), Expect = 0.22, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSG 67
++P+ C +C K+F + L+ HE+TH+G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 30.0 bits (66), Expect = 1.4, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTG 228
E+PY+C+ C FI+ H R H G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 28.1 bits (61), Expect = 5.9, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFS 44
+PYEC C K F+ K H TH P S
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 98 PFICRVCGKSFVRKAEVKDHERTHTGEK 125
F+C VC ++F R+ +K H R+HT EK
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNEK 29
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 203 PYQCDICNATFIYPEHFKKHRRIHTGEK 230
+ C++C F E+ K+H R HT EK
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 204 YQCDICNATFIYPEHFKKHRRIHTGEKP 231
++C+ C TF H+RIHTGEKP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 99 FICRVCGKSFVRKAEVKDHERTHTGEKP 126
F C C K+F + + + H+R HTGEKP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K F C EC K F +L VH +HTG +P
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
K+ F C +C K+F +L H++ H+G K
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEK 39
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 94 TGNRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+G +PF C C K+F K+ + H++TH EKP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
+ +GE+P+ C C F + H++ H EKP
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 35 THTDRKRPFSCEKCDKSFYTQQNLVQHEKTHS 66
+ + ++PF C C+K+F ++ L+ H++TH+
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHA 34
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 9 TGARPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
+G +P+ C C+K F SK H TH + K
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEK 37
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEK 125
+P+ C CGK + R+ + H+R H GEK
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
++P+ CE C K + + NL H++ H G K
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
E+PY+C+ C + + H+R+H GEK
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNR 97
K + C +CGK + NL++H VH G +
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEK 125
RPF C CGK F R++ + H R H+ EK
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
ERP++C+ C F H H R+H+ EK
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHT 94
+ F C ECGK FG +L HL +H+
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHS 66
+RPF C +C K F + +L H + HS
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHS 36
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEK 125
+P C +CGK+F + + + H R HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 202 RPYQCDICNATFIYPEHFKKHRRIHTGEK 230
+P QC +C F H R HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRKRP 42
+PY+C C K+F Y H +THT R++P
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHT-REKP 40
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+P+ C CGKSF + H THT EKP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
K + C+ECGK+F L H HT +P
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 41 RPFSCEKCDKSFYTQQNLVQHEKTHS 66
+P+ C +C KSF L QH TH+
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHT 36
>pdb|2DMI|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Like Domains Of Human Teashirt Homolog 3
Length = 115
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 14/91 (15%)
Query: 9 TGARPYECKTCKKTFVSKYTYKAHLVT---------HTDRKRPFSCEKCDKSFYTQQNLV 59
TGA + CK C + + H+ TD P K K ++L+
Sbjct: 15 TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK-----RSLL 69
Query: 60 QHEKTHSGSKDFVCTECGKAFGTLRNLEVHL 90
+ E K C CG +F +L++L VH+
Sbjct: 70 EMEGKEDAQKVLKCMYCGHSFESLQDLSVHM 100
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 202 RPYQCDICNATFIYPEHFKKHRRIHTGEK 230
+PY C C F P ++H RIHTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEK 125
+P++C C + F ++ H R HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 31.6 bits (70), Expect = 0.54, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHTGE 229
+ +GE+ ++C+ C F + H+RIHTGE
Sbjct: 3 SGSSGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 30.0 bits (66), Expect = 1.3, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 94 TGNRPFICRVCGKSFVRKAEVKDHERTHTGE 124
+G + C CGK+F K+++ H+R HTGE
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 29.3 bits (64), Expect = 2.3, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 66 SGSKDFVCTECGKAFGTLRNLEVHLAVHTG 95
SG K C CGKAF L +H +HTG
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTG 35
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 35 THTDRKRPFSCEKCDKSFYTQQNLVQHEKTHS 66
+ + ++P+SC +C ++F LVQH+K H+
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHT 227
+ +GE+PY C C TF +H+++HT
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 9 TGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFS 44
+G +PY C CK+TF H HT + P S
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
E+ + CD C F Y + H+R+H GEK
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGEK 39
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNR 97
K C ECGK F + L +H VH G +
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGE 124
P+ C CGK F RK ++ H++TH+G+
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSGQ 38
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSG 67
+ P+ C +C K F + LV H+KTHSG
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSG 37
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFS 44
PYEC C K F K +H TH+ + P S
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 206 CDICNATFIYPEHFKKHRRIHTGEKPY 232
C+IC F H +H+ H+GEKPY
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 101 CRVCGKSFVRKAEVKDHERTHTGEKPYQ 128
C +CGK F + H+ +H+GEKPY
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPYS 42
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 97 RPFICRVCGKSFVRKAEVKDHER-THTGEKP 126
+P+ C CGK+F++ + H R HTGEKP
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 173 KRYPCTSCPKAFKRRRLLDYHIKAAHTGERP 203
K Y C C KAF + L H + HTGE+P
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRR-IHTGEKP 231
++PY+C C FI +H R HTGEKP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 94 TGNRPFICRVCGKSFVRKAEVKDHERTHTGE 124
+G +P+ C VCG F RK + H R+H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHTGE 229
+ +GE+PY C +C F + H R H G
Sbjct: 3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 122 TGEKPYQCEFCGAQFRFK 139
+GEKPY C CG +F+ K
Sbjct: 6 SGEKPYSCPVCGLRFKRK 23
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 76 CGKAFGTLRNLEVHLAV-HTGNRPFICRVC--------GKSFVRKAEVKDHERTHTGEK 125
C + F T+ L H+ + H G VC GKSF K ++ +H R HTGEK
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 18/81 (22%)
Query: 118 ERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPC 177
E T GE Y+C+ C + + C R + SHKR N K YPC
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISN----------FC----RHYVTSHKR----NVKVYPC 43
Query: 178 TSCPKAFKRRRLLDYHIKAAH 198
C K F R+ + H+K H
Sbjct: 44 PFCFKEFTRKDNMTAHVKIIH 64
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 10 GARPYECKTCKKTFVSKYTYKAHLVT-HTDRKRPFSCEKCDKSFYTQQNLVQHEK 63
G Y CK C + + + H VT H + + C C K F + N+ H K
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
>pdb|1ZFD|A Chain A, Swi5 Zinc Finger Domain 2, Nmr, 45 Structures
Length = 32
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query: 41 RPFSCE--KCDKSFYTQQNLVQHEKTH 65
RP+SC+ CDK+F +L++H+K+H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSH 28
>pdb|2EMB|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
342- 372) Of Human Zinc Finger Protein 473
Length = 44
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 39 RKRPFSCEKCDKSFYTQQNLVQHEKTHS 66
RKR + C KC +F +++L+QH+KTH+
Sbjct: 10 RKR-YECSKCQATFNLRKHLIQHQKTHA 36
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 94 TGNRPFICRVCGKSFVRKAEVKDHERTHT---GEKPYQCEFCGAQF 136
+G+ C +CG + +KA + H+R H + CEFCG +F
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRF 48
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTH 121
+P++C CGK FV+ +++ +H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 100 ICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQF 136
+C VCG+SF K + H R + + C++C A F
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATF 66
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 16 CKTCKKTFVSKYTYKAHL-VTHTDRKRPFSCEKCDKSFYTQQNLVQH 61
C C ++F SK + HL + H + F C+ C +FY+ L +H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQV--FPCKYCPATFYSSPGLTRH 75
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 98 PFICRVCGKSFVRKAEVKDHERTHTGEKP 126
P+ C C KSF K + H+R HT EKP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 203 PYQCDICNATFIYPEHFKKHRRIHTGEKP 231
PY+C C +F H+R+HT EKP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 97 RPFICRV--CGKSFVRKAEVKDHERTHTGEKP 126
+PF C CG F R E+ H R+H+G KP
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
Protein 32
Length = 42
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 98 PFICRVCGKSFVRKAEVKDHERTHTGEKP 126
P++C CGKSF ++ + H+R+ + P
Sbjct: 11 PYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 199 TGERPYQCDICNATFIYPEHFKKHRRIH 226
TG +P+QC C+ +F +H HR+ H
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRH 30
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 41 RPFSCEKCDKSFYTQQNLVQHEKTH 65
+PF C CD SF +L H K H
Sbjct: 6 KPFQCPDCDWSFSRSDHLALHRKRH 30
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 96 NRPFICRVCGKSFVRKAEVKDHERTHTGEK 125
+P C CGK+F K+++ H+RTH +K
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDK 39
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 199 TGERPYQCDICNATFIYPEHFKKHRRIH 226
TG +P+QC C+ +F +H HR+ H
Sbjct: 7 TGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 41 RPFSCEKCDKSFYTQQNLVQHEKTH 65
+PF C CD+SF +L H K H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 201 ERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
E+ ++C C+ F + H+ +H GEKP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
Length = 30
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 41 RPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
RP+ C C+ SF T+ NL +H K+ + SK
Sbjct: 1 RPYHCSYCNFSFKTKGNLTKHMKSKAHSK 29
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 202 RPYQCDICNATFIYPEHFKKHRRIHTGEK 230
+ + C+ CN F + + H RIHT EK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 7 SHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
S + + + C+ C K F K++ +AHL HT+ K
Sbjct: 3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTH 65
+RP+ C +C K+F +L++H K H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 38 DRKRPFSCEKCDKSFYTQQNLVQHEKTHS 66
+++ F C KC+K+F + L QHE+ H+
Sbjct: 8 QKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>pdb|2CTU|A Chain A, Solution Structure Of Zinc Finger Domain From Human Zn
Finger Protein 483
Length = 73
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 8 HTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSG 67
H G R +C C F+ + T + RK P CEKC K + L + E SG
Sbjct: 13 HLGDRSQKCSKCGIIFIRRSTL-------SRRKTPM-CEKCRKDSCQEAALNKDEGNESG 64
Query: 68 SK 69
K
Sbjct: 65 KK 66
>pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
SYNTAXIN 5
pdb|3EG9|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
MEMBRIN
Length = 770
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 200 GERPYQCDICNATFIYPEHFKKH-----RRIHTGEKPYVCEVRLAVFYYVTCL 247
G R YQC CN P + +H RR+ EKP E+ L + YV L
Sbjct: 117 GGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKP---ELSLGSYEYVATL 166
>pdb|4G9I|A Chain A, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|B Chain B, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|C Chain C, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|D Chain D, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|E Chain E, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|F Chain F, Crystal Structure Of T.Kodakarensis Hypf
Length = 772
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 71 FVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
VCT CG F + +L T C C ++E +D +P C
Sbjct: 129 IVCTNCGPRFTIIEDLPYDRENTTXKEFPXCDFC------RSEYEDPLNRRYHAEPTACP 182
Query: 131 FCGAQFRFKGSSGTE 145
CG +R S G E
Sbjct: 183 VCGPSYRLYTSDGQE 197
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 202 RPYQCDICNATFIYPEHFKKHRRIHTGEK 230
+PYQCD C +F P +H H +K
Sbjct: 2 KPYQCDYCGRSFSDPTSKMRHLETHDTDK 30
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.137 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,443,246
Number of Sequences: 62578
Number of extensions: 335952
Number of successful extensions: 2302
Number of sequences better than 100.0: 197
Number of HSP's better than 100.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 1257
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)