RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12834
(275 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 176 bits (448), Expect = 2e-55
Identities = 78/210 (37%), Positives = 113/210 (53%), Gaps = 22/210 (10%)
Query: 22 TFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFG 81
+ + A K P++C +C KSF +L +H++TH+G K + C ECGK+F
Sbjct: 2 SEFGSSSSVAQAALEPGEK-PYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFS 60
Query: 82 TLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGS 141
++L H HTG +P+ C CGKSF ++A ++ H+RTHTGEKPY C CG F
Sbjct: 61 DKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSF----- 115
Query: 142 SGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGE 201
SQ ++L++H+R TH +K Y C C K+F R L H + HTGE
Sbjct: 116 --------------SQLAHLRAHQR-THTGEKPYKCPECGKSFSREDNLHTH-QRTHTGE 159
Query: 202 RPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
+PY+C C +F + H+R HTG+K
Sbjct: 160 KPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 166 bits (424), Expect = 9e-52
Identities = 73/184 (39%), Positives = 98/184 (53%), Gaps = 21/184 (11%)
Query: 51 SFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVR 110
S + + V G K + C ECGK+F +L H HTG +P+ C CGKSF
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 111 KAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHF 170
K ++ H+RTHTGEKPY+C CG F SQR+NL++H+R TH
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSF-------------------SQRANLRAHQR-THT 101
Query: 171 NDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
+K Y C C K+F + L H + HTGE+PY+C C +F ++ H+R HTGEK
Sbjct: 102 GEKPYACPECGKSFSQLAHLRAH-QRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEK 160
Query: 231 PYVC 234
PY C
Sbjct: 161 PYKC 164
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 141 bits (358), Expect = 5e-42
Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 33/189 (17%)
Query: 59 VQHEKTHSGSKDFVC--TECGKAFGTLRNLEVHLAVHTGNRPFIC--RVCGKSFVRKAEV 114
+ + K ++C +CG A+ L+ HL HTG +PF C C K F +
Sbjct: 1 MGEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHL 60
Query: 115 KDHERTHTGEKPYQCE--FCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFND 172
H THTGEK + C+ C +F + ++N++ H N
Sbjct: 61 TRHSLTHTGEKNFTCDSDGCDLRF-------------------TTKANMKKHFN-RFHNI 100
Query: 173 KRYP--CTS--CPKAFKRRRLLDYHIKAAHTGERPYQC--DICNATFIYPEHFKKHRRIH 226
K C C KAFK+ L H + +HT + PY+C + C+ F P K+H ++H
Sbjct: 101 KICVYVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Query: 227 TGEKPYVCE 235
G +
Sbjct: 160 AGYPCKKDD 168
Score = 138 bits (349), Expect = 1e-40
Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 33/208 (15%)
Query: 4 HLVSHTGARPYECKT--CKKTFVSKYTYKAHLVTHTDRKRPFSCE--KCDKSFYTQQNLV 59
+ Y C C + + +AHL HT K PF C+ C+K F + +L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEK-PFPCKEEGCEKGFTSLHHLT 61
Query: 60 QHEKTHSGSKDFVCTE--CGKAFGTLRNLEVHLAVHTGNR--PFICRV--CGKSFVRKAE 113
+H TH+G K+F C C F T N++ H + ++C CGK+F + +
Sbjct: 62 RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQ 121
Query: 114 VKDHERTHTGEKPYQC--EFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFN 171
+K H+ +HT + PY+C E C +F S S L+ H++ H
Sbjct: 122 LKVHQFSHTQQLPYECPHEGCDKRF-------------------SLPSRLKRHEK-VHAG 161
Query: 172 DKRYPCTSCPKAFKRRRLLDYHIKAAHT 199
SC K L H+ H
Sbjct: 162 YPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 131 bits (333), Expect = 3e-38
Identities = 52/210 (24%), Positives = 69/210 (32%), Gaps = 35/210 (16%)
Query: 31 AHLVTHTDRKRPFSCEK--CDKSFYTQQNLVQHEKTHSGSKDFVCTE--CGKAFGTLRNL 86
K + C C ++ L H H+G K F C E C K F +L +L
Sbjct: 2 GEKALPVVYK-RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHL 60
Query: 87 EVHLAVHTGNRPFIC--RVCGKSFVRKAEVKDHERTHTGEK--PYQCEF--CGAQFRFKG 140
H HTG + F C C F KA +K H K Y C F CG F
Sbjct: 61 TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAF---- 116
Query: 141 SSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCT--SCPKAFKRRRLLDYHIKAAH 198
+ + L+ H+ +H Y C C K F L H K H
Sbjct: 117 ---------------KKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VH 159
Query: 199 TGERPYQCDICNATF-IYPEHFKKHRRIHT 227
G + D C+ + + K H
Sbjct: 160 AGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 36.0 bits (84), Expect = 0.006
Identities = 3/16 (18%), Positives = 6/16 (37%)
Query: 221 KHRRIHTGEKPYVCEV 236
+ + K Y+C
Sbjct: 2 GEKALPVVYKRYICSF 17
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 130 bits (328), Expect = 7e-38
Identities = 54/202 (26%), Positives = 73/202 (36%), Gaps = 62/202 (30%)
Query: 41 RPFSCEKCDKSFYTQQNLVQH---EKTHSGSKDFVCTECG-----KAFGTLRNLEVHLAV 92
+ C + F +Q+ LV H E H K+FVC G + F L VH+
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 93 HTGNRPFICRV--CGKSFVRKAEVKDHERTHTGEKPYQCEF--CGAQFRFKGSSGTESID 148
HTG +P C C KS+ R +K H R+HTGEKPY CE C F
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAF------------ 109
Query: 149 KLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDI 208
S S+ H+ T H+ E+PY C +
Sbjct: 110 -------SNASDRAKHQNRT-----------------------------HSNEKPYVCKL 133
Query: 209 --CNATFIYPEHFKKHRRIHTG 228
C + P +KH + G
Sbjct: 134 PGCTKRYTDPSSLRKHVKTVHG 155
Score = 102 bits (256), Expect = 3e-27
Identities = 42/169 (24%), Positives = 65/169 (38%), Gaps = 51/169 (30%)
Query: 8 HTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSG 67
H + + C C + + F Q LV H + H+G
Sbjct: 29 HGERKEFVCHWG------------------------GCSRELRPFKAQYMLVVHMRRHTG 64
Query: 68 SKDFVCT--ECGKAFGTLRNLEVHLAVHTGNRPFIC--RVCGKSFVRKAEVKDH-ERTHT 122
K CT C K++ L NL+ HL HTG +P++C C K+F ++ H RTH+
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 123 GEKPYQCEF--CGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATH 169
EKPY C+ C ++ + S+L+ H + T
Sbjct: 125 NEKPYVCKLPGCTKRY-------------------TDPSSLRKHVK-TV 153
Score = 93.4 bits (233), Expect = 6e-24
Identities = 32/144 (22%), Positives = 47/144 (32%), Gaps = 49/144 (34%)
Query: 97 RPFICRVCGKSFVRKAEVKDH---ERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLC 153
C + F + ++ H E H K + C + G +
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELR-------------P 48
Query: 154 FLSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDI--CNA 211
F + L H R HTGE+P++C C
Sbjct: 49 F-KAQYMLVVHMRR------------------------------HTGEKPHKCTFEGCRK 77
Query: 212 TFIYPEHFKKHRRIHTGEKPYVCE 235
++ E+ K H R HTGEKPY+CE
Sbjct: 78 SYSRLENLKTHLRSHTGEKPYMCE 101
Score = 53.8 bits (130), Expect = 3e-09
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 4 HLVSHTGARPYECK--TCKKTFVSKYTYKAHLV-THTDRKRPFSCEK--CDKSFYTQQNL 58
HL SHTG +PY C+ C K F + H TH++ K P+ C+ C K + +L
Sbjct: 88 HLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK-PYVCKLPGCTKRYTDPSSL 146
Query: 59 VQHEKTHSG 67
+H KT G
Sbjct: 147 RKHVKTVHG 155
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 128 bits (323), Expect = 3e-37
Identities = 45/201 (22%), Positives = 66/201 (32%), Gaps = 62/201 (30%)
Query: 47 KCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPF------- 99
S + + + C + F T+ L H+ + P
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 100 --ICRVCGKSFVRKAEVKDHERTHTGEKPYQCEF--CGAQFRFKGSSGTESIDKLLLCFL 155
C GKSF K ++ +H R HTGEKP+ C F CG F
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIF------------------- 102
Query: 156 SQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDI--CNATF 213
++ NL+ HKR HTGE+P++C+ C+ F
Sbjct: 103 ARSENLKIHKR------------------------------THTGEKPFKCEFEGCDRRF 132
Query: 214 IYPEHFKKHRRIHTGEKPYVC 234
KKH +HT +K
Sbjct: 133 ANSSDRKKHMHVHTSDKSGPS 153
Score = 119 bits (301), Expect = 7e-34
Identities = 49/174 (28%), Positives = 67/174 (38%), Gaps = 37/174 (21%)
Query: 21 KTFVSKYTYKAHLV---THTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFV----- 72
+ S K L + + CD++F T LV H
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQL-SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 73 ----CTECGKAFGTLRNLEVHLAVHTGNRPFICRV--CGKSFVRKAEVKDHERTHTGEKP 126
C GK+F L H+ VHTG +PF C CGK F R +K H+RTHTGEKP
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKP 120
Query: 127 YQCEF--CGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCT 178
++CEF C +F + S+ + H H +DK P +
Sbjct: 121 FKCEFEGCDRRF-------------------ANSSDRKKHMH-VHTSDKSGPSS 154
Score = 89.3 bits (222), Expect = 3e-22
Identities = 36/139 (25%), Positives = 48/139 (34%), Gaps = 42/139 (30%)
Query: 4 HLVSHTGARPY---------ECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYT 54
H+ P EC K+F +KY
Sbjct: 44 HVTMEHVGGPEQNNHVCYWEECPREGKSFKAKY--------------------------- 76
Query: 55 QQNLVQHEKTHSGSKDFVCT--ECGKAFGTLRNLEVHLAVHTGNRPFICRV--CGKSFVR 110
LV H + H+G K F C CGK F NL++H HTG +PF C C + F
Sbjct: 77 --KLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFAN 134
Query: 111 KAEVKDHERTHTGEKPYQC 129
++ K H HT +K
Sbjct: 135 SSDRKKHMHVHTSDKSGPS 153
Score = 53.4 bits (129), Expect = 4e-09
Identities = 6/56 (10%), Positives = 13/56 (23%), Gaps = 2/56 (3%)
Query: 182 KAFKRRRLLDYHI--KAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
+ + + + K + C+ TF H + P
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNN 57
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 117 bits (297), Expect = 1e-33
Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 23/137 (16%)
Query: 36 HTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVH---LAV 92
+ C C K F ++ L H + H+G K F C +CGK + NL H +
Sbjct: 2 SSGSS-GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM 60
Query: 93 HTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLL 152
+ + F C VC ++F R+ E++ H +HTGE PY+C C QF
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQF---------------- 104
Query: 153 CFLSQRSNLQSHKRATH 169
Q+ +LQSH H
Sbjct: 105 ---MQKKDLQSHMIKLH 118
Score = 116 bits (294), Expect = 4e-33
Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 23/141 (16%)
Query: 93 HTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLL 152
+G+ C C K F+ K +K H R HTGEKP++C CG +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCY---------------- 45
Query: 153 CFLSQRSNLQSHKR--ATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICN 210
++ NL H+ + +++ + C+ C + F+RR L H+ + HTGE PY+C C+
Sbjct: 46 ---FRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVS-HTGEMPYKCSSCS 101
Query: 211 ATFIYPEHFKKH-RRIHTGEK 230
F+ + + H ++H+G
Sbjct: 102 QQFMQKKDLQSHMIKLHSGPS 122
Score = 87.9 bits (219), Expect = 3e-22
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 27/119 (22%)
Query: 8 HTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSG 67
HTG +P+EC C K + K +L+ H +
Sbjct: 30 HTGEKPFECPKCGKCY----FRKENLLEHE----------------------ARNCMNRS 63
Query: 68 SKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDH-ERTHTGEK 125
+ F C+ C + F L +H+ HTG P+ C C + F++K +++ H + H+G
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 59.4 bits (145), Expect = 1e-11
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 197 AHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
+G +C C+ F+ + K H R HTGEKP+ C
Sbjct: 1 GSSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFEC 38
Score = 38.3 bits (90), Expect = 5e-04
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDR 39
H+VSHTG PY+C +C + F K L +H +
Sbjct: 85 HMVSHTGEMPYKCSSCSQQF----MQKKDLQSHMIK 116
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 113 bits (285), Expect = 6e-32
Identities = 48/170 (28%), Positives = 62/170 (36%), Gaps = 56/170 (32%)
Query: 69 KDFVCT--ECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+ C C K F + HL H G R +C CGK+FV +++K H+ HTGEKP
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP 62
Query: 127 YQCEF--CGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKAF 184
+QC F CG +F S NL++H R
Sbjct: 63 FQCTFEGCGKRF-------------------SLDFNLRTHVRI----------------- 86
Query: 185 KRRRLLDYHIKAAHTGERPYQCDI--CNATFIYPEHFKKHRRIHTGEKPY 232
HTG+RPY C CN F + K H H K
Sbjct: 87 -------------HTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 111 bits (279), Expect = 5e-31
Identities = 48/173 (27%), Positives = 64/173 (36%), Gaps = 56/173 (32%)
Query: 39 RKRPFSC--EKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGN 96
R +C + C K F + +H TH G + VC ECGKAF L+ H VHTG
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGE 60
Query: 97 RPFICRV--CGKSFVRKAEVKDHERTHTGEKPYQCEF--CGAQFRFKGSSGTESIDKLLL 152
+PF C CGK F ++ H R HTG++PY C F C +F
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKF---------------- 104
Query: 153 CFLSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQ 205
+Q +NL+SH H + Q
Sbjct: 105 ---AQSTNLKSHIL------------------------------THAKAKNNQ 124
Score = 90.3 bits (225), Expect = 5e-23
Identities = 37/132 (28%), Positives = 50/132 (37%), Gaps = 36/132 (27%)
Query: 4 HLVSHT---GARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQ 60
+ H G R + C C K+F L +
Sbjct: 22 AMRKHLHTHGPRVHVCAE-----------------------------CGKAFVESSKLKR 52
Query: 61 HEKTHSGSKDFVCT--ECGKAFGTLRNLEVHLAVHTGNRPFICRV--CGKSFVRKAEVKD 116
H+ H+G K F CT CGK F NL H+ +HTG+RP++C C K F + +K
Sbjct: 53 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKS 112
Query: 117 HERTHTGEKPYQ 128
H TH K Q
Sbjct: 113 HILTHAKAKNNQ 124
Score = 88.7 bits (221), Expect = 2e-22
Identities = 35/142 (24%), Positives = 49/142 (34%), Gaps = 54/142 (38%)
Query: 97 RPFICRV--CGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCF 154
R C C K F + ++ H TH G + + C CG F
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAF------------------ 44
Query: 155 LSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDI--CNAT 212
+ S L+ H+ HTGE+P+QC C
Sbjct: 45 -VESSKLKRHQLV------------------------------HTGEKPFQCTFEGCGKR 73
Query: 213 FIYPEHFKKHRRIHTGEKPYVC 234
F + + H RIHTG++PYVC
Sbjct: 74 FSLDFNLRTHVRIHTGDRPYVC 95
Score = 43.3 bits (103), Expect = 8e-06
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 201 ERPYQCDI--CNATFIYPEHFKKHRRIHTGEKPYVCE 235
R C C F +KH H G + +VC
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCA 38
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 111 bits (280), Expect = 3e-31
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 26/135 (19%)
Query: 41 RPFSCE--KCDKSFYTQQNLVQHEKTHSGSKDFVCT--ECGKAFGTLRNLEVHLAVHTGN 96
RPF C C+K ++ +L H + H+G K + C +C + F L+ H HTG
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEF--CGAQFRFKGSSGTESIDKLLLCF 154
+PF C+ C + F R +K H RTHTGEKP+ C + C +F
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKF------------------ 106
Query: 155 LSQRSNLQSHKRATH 169
++ L H H
Sbjct: 107 -ARSDELVRHHN-MH 119
Score = 106 bits (267), Expect = 3e-29
Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 27/139 (19%)
Query: 94 TGNRPFIC--RVCGKSFVRKAEVKDHERTHTGEKPYQCEF--CGAQFRFKGSSGTESIDK 149
+ RPF+C C K + + + ++ H R HTGEKPYQC+F C +F
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRF------------- 48
Query: 150 LLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDI- 208
S+ L+ H+R H K + C +C + F R L H + HTGE+P+ C
Sbjct: 49 ------SRSDQLKRHQR-RHTGVKPFQCKTCQRKFSRSDHLKTHTRT-HTGEKPFSCRWP 100
Query: 209 -CNATFIYPEHFKKHRRIH 226
C F + +H +H
Sbjct: 101 SCQKKFARSDELVRHHNMH 119
Score = 81.0 bits (201), Expect = 1e-19
Identities = 34/120 (28%), Positives = 48/120 (40%), Gaps = 29/120 (24%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEK 63
H HTG +PY+C + C++ F L +H++
Sbjct: 27 HSRKHTGEKPYQC---------------------------DFKDCERRFSRSDQLKRHQR 59
Query: 64 THSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRV--CGKSFVRKAEVKDHERTH 121
H+G K F C C + F +L+ H HTG +PF CR C K F R E+ H H
Sbjct: 60 RHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 57.1 bits (139), Expect = 8e-11
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 199 TGERPYQCD--ICNATFIYPEHFKKHRRIHTGEKPYVCEVR 237
+ +RP+ C CN + H + H R HTGEKPY C+ +
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFK 42
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 110 bits (277), Expect = 6e-31
Identities = 28/150 (18%), Positives = 46/150 (30%), Gaps = 49/150 (32%)
Query: 85 NLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGT 144
+ FIC+ CG+ F + + HERTHT E+PY C+ C F
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAF-------- 55
Query: 145 ESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPY 204
++ +L+ H+ H+ E+P+
Sbjct: 56 -----------RRQDHLRDHRYI------------------------------HSKEKPF 74
Query: 205 QCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
+C C F H+ +H
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 109 bits (274), Expect = 2e-30
Identities = 34/123 (27%), Positives = 48/123 (39%), Gaps = 20/123 (16%)
Query: 57 NLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKD 116
K+F+C CG+ F NL +H HT RP+ C +C K+F R+ ++D
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
H H+ EKP++C+ CG F Q L HK H
Sbjct: 64 HRYIHSKEKPFKCQECGKGF-------------------CQSRTLAVHKT-LHMQTSSPT 103
Query: 177 CTS 179
S
Sbjct: 104 AAS 106
Score = 107 bits (269), Expect = 1e-29
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLA 91
+ +K F C+ C + F NL+ HE+TH+ + + C C KAF +L H
Sbjct: 8 GRLPSKTKK-EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY 66
Query: 92 VHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+H+ +PF C+ CGK F + + H+ H
Sbjct: 67 IHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 87.1 bits (217), Expect = 4e-22
Identities = 30/119 (25%), Positives = 42/119 (35%), Gaps = 49/119 (41%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+K + C+FCG F ++ NL H+R
Sbjct: 8 GRLPSKTKKEFICKFCGRHF-------------------TKSYNLLIHERT--------- 39
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
HT ERPY CDIC+ F +H + HR IH+ EKP+ C+
Sbjct: 40 ---------------------HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Score = 37.4 bits (88), Expect = 7e-04
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
H H+ +P++C+ C K F T H H +
Sbjct: 64 HRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTS-SPTA 104
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 109 bits (275), Expect = 1e-30
Identities = 36/142 (25%), Positives = 47/142 (33%), Gaps = 49/142 (34%)
Query: 93 HTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLL 152
+ P C VCGK F RK ++K H R HTG KPY+C+ C
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAA---------------- 46
Query: 153 CFLSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNAT 212
+ S+L H R H+ ERP++C IC
Sbjct: 47 ---ADSSSLNKHLRI------------------------------HSDERPFKCQICPYA 73
Query: 213 FIYPEHFKKHRRIHTGEKPYVC 234
H R HTG+
Sbjct: 74 SRNSSQLTVHLRSHTGDSGPSS 95
Score = 108 bits (273), Expect = 2e-30
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 35 THTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHT 94
+ P CE C K F + L H + H+G K + C C A +L HL +H+
Sbjct: 2 SSGSSG-PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS 60
Query: 95 GNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
RPF C++C + +++ H R+HTG+
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 99.8 bits (250), Expect = 5e-27
Identities = 28/143 (19%), Positives = 44/143 (30%), Gaps = 49/143 (34%)
Query: 64 THSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTG 123
+ S C CGK F L+ H+ HTG +P+ C+ C + + + H R H+
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 124 EKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKA 183
E+P++C+ C S L H R
Sbjct: 62 ERPFKCQICPYAS-------------------RNSSQLTVHLR----------------- 85
Query: 184 FKRRRLLDYHIKAAHTGERPYQC 206
+HTG+
Sbjct: 86 -------------SHTGDSGPSS 95
Score = 80.2 bits (199), Expect = 1e-19
Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 49/116 (42%)
Query: 120 THTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTS 179
+ P++CE CG F S++ L++H R
Sbjct: 2 SSGSSGPHKCEVCGKCF-------------------SRKDKLKTHMRC------------ 30
Query: 180 CPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
HTG +PY+C C+ KH RIH+ E+P+ C+
Sbjct: 31 ------------------HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Score = 65.1 bits (160), Expect = 6e-14
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 8 HTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSG 67
HTG +PY+CKTC + HL H+D + PF C+ C + L H ++H+G
Sbjct: 31 HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER-PFKCQICPYASRNSSQLTVHLRSHTG 89
Query: 68 SKDFVC 73
Sbjct: 90 DSGPSS 95
Score = 38.6 bits (91), Expect = 2e-04
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
HL H+ RP++C+ C + HL +HT S
Sbjct: 55 HLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDS-GPSS 95
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 105 bits (265), Expect = 4e-29
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Query: 35 THTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHT 94
+ K + C+ C KSF + +H H G + + C CGK F +L H+ +HT
Sbjct: 4 GSSGDK-LYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 95 GNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGS 141
G +P+ C +C K F+ + H + K Y+
Sbjct: 62 GIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASG 106
Score = 102 bits (257), Expect = 6e-28
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 24/117 (20%)
Query: 118 ERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPC 177
+G+K Y C+ CG F + +S H H + Y C
Sbjct: 2 SSGSSGDKLYPCQ-CGKSF-------------------THKSQRDRHMS-MHLGLRPYGC 40
Query: 178 TSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
C K FK + L H+K HTG +PY+C+IC F++ + F HR + + K Y
Sbjct: 41 GVCGKKFKMKHHLVGHMKI-HTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEA 94
Score = 99.8 bits (250), Expect = 6e-27
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 23/126 (18%)
Query: 62 EKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTH 121
SG K + C +CGK+F + H+++H G RP+ C VCGK F K + H + H
Sbjct: 2 SSGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Query: 122 TGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCP 181
TG KPY+C C +F R + H+ K Y
Sbjct: 61 TGIKPYECNICAKRF-------------------MWRDSF--HRH-VTSCTKSYEAAKAE 98
Query: 182 KAFKRR 187
+
Sbjct: 99 QNTTEA 104
Score = 96.7 bits (242), Expect = 1e-25
Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 24/122 (19%)
Query: 92 VHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLL 151
+G++ + C+ CGKSF K++ H H G +PY C CG +F
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKF--------------- 47
Query: 152 LCFLSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNA 211
+ +L H + H K Y C C K F R H+ + + Y+
Sbjct: 48 ----KMKHHLVGHMK-IHTGIKPYECNICAKRFMWRDSFHRHV---TSCTKSYEAAKAEQ 99
Query: 212 TF 213
Sbjct: 100 NT 101
Score = 70.5 bits (174), Expect = 8e-16
Identities = 23/104 (22%), Positives = 32/104 (30%), Gaps = 31/104 (29%)
Query: 8 HTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSG 67
H G RPY C C K F K +LV H K H+G
Sbjct: 32 HLGLRPYGCGVCGKKF------------------------KMKH-----HLVGHMKIHTG 62
Query: 68 SKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRK 111
K + C C K F + H V + + + ++
Sbjct: 63 IKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEA 104
Score = 31.3 bits (72), Expect = 0.086
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 224 RIHTGEKPYVCE 235
+G+K Y C+
Sbjct: 3 SGSSGDKLYPCQ 14
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 96.4 bits (241), Expect = 8e-26
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 41 RPFSC--EKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
RP++C E CD+ F +L +H + H+G K F C C + F +L H+ HTG +P
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 99 FICRVCGKSFVRKAEVKDHERTHTGEK 125
F C +CG+ F R E K H + H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 94.8 bits (237), Expect = 4e-25
Identities = 36/136 (26%), Positives = 51/136 (37%), Gaps = 51/136 (37%)
Query: 97 RPFICRV--CGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCF 154
RP+ C V C + F + + H R HTG+KP+QC C F
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNF------------------ 44
Query: 155 LSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFI 214
S+ +L +H R HTGE+P+ CDIC F
Sbjct: 45 -SRSDHLTTHIRT------------------------------HTGEKPFACDICGRKFA 73
Query: 215 YPEHFKKHRRIHTGEK 230
+ K+H +IH +K
Sbjct: 74 RSDERKRHTKIHLRQK 89
Score = 90.6 bits (226), Expect = 1e-23
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 22/103 (21%)
Query: 69 KDFVC--TECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+ + C C + F +L H+ +HTG +PF CR+C ++F R + H RTHTGEKP
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 127 YQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATH 169
+ C+ CG +F ++ + H + H
Sbjct: 63 FACDICGRKF-------------------ARSDERKRHTK-IH 85
Score = 77.5 bits (192), Expect = 1e-18
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 12 RPYECKT--CKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
RPY C C + F + H+ HT +K PF C C ++F +L H +TH+G K
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQK-PFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 70 DFVCTECGKAFGTLRNLEVHLAVHTG 95
F C CG+ F + H +H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLR 87
Score = 69.4 bits (171), Expect = 1e-15
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 173 KRYPCTS--CPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
+ Y C C + F + L HI+ HTG++P+QC IC F +H H R HTGEK
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 231 PYVCE 235
P+ C+
Sbjct: 62 PFACD 66
Score = 63.6 bits (156), Expect = 2e-13
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEK 63
H+ HTG +P++C+ C + F H+ THT K PF+C+ C + F +H K
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK-PFACDICGRKFARSDERKRHTK 83
Query: 64 THSGSKD 70
H KD
Sbjct: 84 IHLRQKD 90
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 94.1 bits (235), Expect = 5e-25
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 57 NLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTG----NRPFICRVCGKSFVRKA 112
+ +TH+G K + C+ C K F + L++H + F+C CGK+F R+
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 113 EVKDHERTHTGEKPYQCEFCGAQF 136
+ H G + E G
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 83.0 bits (206), Expect = 1e-20
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 8 HTGARPYECKTCKKTFVSKYTYKAHLVTHTD---RKRPFSCEKCDKSFYTQQNLVQHEKT 64
HTG +PY C C KTF K H + D F C KC K+F + + +H
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69
Query: 65 HSGSKDFVCTECGKAFG 81
+G G + G
Sbjct: 70 CAGPDGVEGENSGPSSG 86
Score = 75.3 bits (186), Expect = 7e-18
Identities = 24/101 (23%), Positives = 33/101 (32%), Gaps = 25/101 (24%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATH----FND 172
RTHTGEKPY C C F Q+ L H + + F
Sbjct: 6 SGRTHTGEKPYACSHCDKTF-------------------RQKQLLDMHFK-RYHDPNFVP 45
Query: 173 KRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATF 213
+ C+ C K F RR + H G + + +
Sbjct: 46 AAFVCSKCGKTFTRRNTMARH-ADNCAGPDGVEGENSGPSS 85
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 94.5 bits (236), Expect = 5e-25
Identities = 35/107 (32%), Positives = 46/107 (42%), Gaps = 21/107 (19%)
Query: 65 HSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGE 124
SGS C CGK F + +L H H+G +P+ C VCG F RK + H R+H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 125 --KPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATH 169
KPY C+ CG F S+ +L H + H
Sbjct: 62 VGKPYICQSCGKGF-------------------SRPDHLNGHIKQVH 89
Score = 92.9 bits (232), Expect = 2e-24
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 22/112 (19%)
Query: 93 HTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLL 152
+G+ C +CGK F + H+ +H+GEKPY C CG +F
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRF---------------- 45
Query: 153 CFLSQRSNLQSHKRATHF--NDKRYPCTSCPKAFKRRRLLDYHIKAAHTGER 202
++ + H R +H K Y C SC K F R L+ HIK H+G
Sbjct: 46 ---KRKDRMSYHVR-SHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 91.4 bits (228), Expect = 8e-24
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 36 HTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTG 95
+ +CE C K F +L +H+ +HSG K + C CG F + H+ H G
Sbjct: 2 SSGSS-GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 96 --NRPFICRVCGKSFVRKAEVKDHE-RTHTGEK 125
+P+IC+ CGK F R + H + H+G
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 72.5 bits (179), Expect = 1e-16
Identities = 25/117 (21%), Positives = 34/117 (29%), Gaps = 51/117 (43%)
Query: 121 HTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSC 180
+G CE CG F +L HK +
Sbjct: 2 SSGSSGVACEICGKIF-------------------RDVYHLNRHKLS------------- 29
Query: 181 PKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGE--KPYVCE 235
H+GE+PY C +C F + H R H G KPY+C+
Sbjct: 30 -----------------HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Score = 61.7 bits (151), Expect = 9e-13
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 197 AHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
+G C+IC F H +H+ H+GEKPY C
Sbjct: 1 GSSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCP 39
Score = 56.7 bits (138), Expect = 7e-11
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHT-DRKRPFSCEKCDKSFYTQQNLVQHE 62
H +SH+G +PY C C F K H+ +H +P+ C+ C K F +L H
Sbjct: 26 HKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHI 85
Query: 63 K-THSGSK 69
K HSG
Sbjct: 86 KQVHSGPS 93
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 88.6 bits (221), Expect = 5e-23
Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 19/96 (19%)
Query: 71 FVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
F C CGK+F L HL +H+ RP+ C+ CGK F +K+++K H HTGEKP++C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 131 FCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKR 166
CG F SQ SNL +H R
Sbjct: 62 VCGKAF-------------------SQSSNLITHSR 78
Score = 83.6 bits (208), Expect = 5e-21
Identities = 31/81 (38%), Positives = 45/81 (55%)
Query: 43 FSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICR 102
F C+ C KSF L H HS ++ + C CGK F +++ H +HTG +P C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 103 VCGKSFVRKAEVKDHERTHTG 123
VCGK+F + + + H R HTG
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 80.2 bits (199), Expect = 1e-19
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 49/128 (38%)
Query: 101 CRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSN 160
C++CGKSF R + + H H+ +PY C++CG +F Q+S+
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRF-------------------HQKSD 44
Query: 161 LQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFK 220
++ H HTGE+P++C +C F +
Sbjct: 45 MKKHTFI------------------------------HTGEKPHKCQVCGKAFSQSSNLI 74
Query: 221 KHRRIHTG 228
H R HTG
Sbjct: 75 THSRKHTG 82
Score = 74.8 bits (185), Expect = 1e-17
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 14 YECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVC 73
++CK C K+F T HL+ H+D + P+ C+ C K F+ + ++ +H H+G K C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTR-PYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 74 TECGKAFGTLRNLEVHLAVHTG 95
CGKAF NL H HTG
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 71.7 bits (177), Expect = 2e-16
Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 175 YPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
+ C C K+FKR L H H+ RPY C C F KKH IHTGEKP+ C
Sbjct: 2 FDCKICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 235 E 235
+
Sbjct: 61 Q 61
Score = 35.1 bits (82), Expect = 0.003
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Query: 8 HTGARPYECKTCKKTFVSKYTYKAHLVTH 36
HTG +P++C+ C K F + ++L+TH
Sbjct: 52 HTGEKPHKCQVCGKAF----SQSSNLITH 76
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 88.3 bits (220), Expect = 9e-23
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 41 RPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFI 100
+PF C C ++F +L H +TH+G K F C CG+ F + H + P +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPIL 60
Query: 101 CRVCGKSFVRK---AEVKDHERTHTGEK 125
+ + + GE+
Sbjct: 61 EDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 85.6 bits (213), Expect = 1e-21
Identities = 26/137 (18%), Positives = 41/137 (29%), Gaps = 53/137 (38%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLS 156
+PF CR+C ++F R + H RTHTGEKP+ C+ CG +F +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF-------------------A 42
Query: 157 QRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYP 216
+ + H+ P D
Sbjct: 43 RSDERKRHRD-IQ------------------------------HILPILEDKVEELLSKN 71
Query: 217 EHFKKHR---RIHTGEK 230
H + + GE+
Sbjct: 72 YHLENEVARLKKLVGER 88
Score = 82.2 bits (204), Expect = 2e-20
Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 22/103 (21%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQ 128
K F C C + F +L H+ HTG +PF C +CG+ F R E K H P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPIL 60
Query: 129 CEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRA--TH 169
+ S+ +L++
Sbjct: 61 EDKVEELL-------------------SKNYHLENEVARLKKL 84
Score = 66.8 bits (164), Expect = 1e-14
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 173 KRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPY 232
K + C C + F R L HI+ HTGE+P+ CDIC F + K+HR I P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDIQH-ILPI 59
Query: 233 VCE 235
+ +
Sbjct: 60 LED 62
Score = 54.8 bits (133), Expect = 2e-10
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 8 HTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNL---VQHEKT 64
HTG +P+ C C + F K H P +K ++ +L V K
Sbjct: 26 HTGEKPFACDICGRKFARSDERKRHRDIQH--ILPILEDKVEELLSKNYHLENEVARLKK 83
Query: 65 HSGSK 69
G +
Sbjct: 84 LVGER 88
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 86.7 bits (216), Expect = 2e-22
Identities = 28/71 (39%), Positives = 36/71 (50%)
Query: 57 NLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKD 116
+ H K + C C +F NL H VHTG +P+ C +CG F R A +K
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 117 HERTHTGEKPY 127
H R H+GEKPY
Sbjct: 64 HTRIHSGEKPY 74
Score = 85.6 bits (213), Expect = 7e-22
Identities = 35/116 (30%), Positives = 44/116 (37%), Gaps = 49/116 (42%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
H +KPY+C+ C A F + NL SHK
Sbjct: 8 HSHMTHSDKPYKCDRCQASF-------------------RYKGNLASHKTV--------- 39
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPY 232
HTGE+PY+C+IC A F P + K H RIH+GEKPY
Sbjct: 40 ---------------------HTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 74.4 bits (184), Expect = 1e-17
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 20/91 (21%)
Query: 85 NLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGT 144
+ H + ++P+ C C SF K + H+ HTGEKPY+C CGAQF
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQF-------- 55
Query: 145 ESIDKLLLCFLSQRSNLQSHKRATHFNDKRY 175
++ +NL++H R H +K Y
Sbjct: 56 -----------NRPANLKTHTR-IHSGEKPY 74
Score = 64.8 bits (159), Expect = 5e-14
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLA 91
H K P+ C++C SF + NL H+ H+G K + C CG F NL+ H
Sbjct: 8 HSHMTHSDK-PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Query: 92 VHTGNRPF 99
+H+G +P+
Sbjct: 67 IHSGEKPY 74
Score = 61.7 bits (151), Expect = 7e-13
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
++PY+CD C A+F Y + H+ +HTGEKPY C
Sbjct: 12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCN 49
Score = 59.8 bits (146), Expect = 3e-12
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 8 HTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSG 67
+PY+C C+ +F K +H HT K P+ C C F NL H + HSG
Sbjct: 12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEK-PYRCNICGAQFNRPANLKTHTRIHSG 70
Query: 68 SK 69
K
Sbjct: 71 EK 72
Score = 37.8 bits (89), Expect = 2e-04
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 218 HFKKHRRIHTGEKPYVCE 235
H H + +KPY C+
Sbjct: 4 HHHHHSHMTHSDKPYKCD 21
Score = 35.1 bits (82), Expect = 0.002
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHT 37
H HTG +PY C C F K H H+
Sbjct: 36 HKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 86.8 bits (216), Expect = 3e-22
Identities = 27/70 (38%), Positives = 36/70 (51%)
Query: 58 LVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDH 117
HSG K + C ECGKAF L H VHTG +P+ C CGK+F + + + +H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 118 ERTHTGEKPY 127
+R HT
Sbjct: 62 QRIHTSGPSS 71
Score = 78.7 bits (195), Expect = 2e-19
Identities = 29/116 (25%), Positives = 35/116 (30%), Gaps = 49/116 (42%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
H+GEKPY C CG F S+ S L H+R
Sbjct: 5 SSGIHSGEKPYGCVECGKAF-------------------SRSSILVQHQRV--------- 36
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPY 232
HTGE+PY+C C F H+RIHT
Sbjct: 37 ---------------------HTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 69.4 bits (171), Expect = 8e-16
Identities = 30/119 (25%), Positives = 41/119 (34%), Gaps = 49/119 (41%)
Query: 86 LEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTE 145
+H+G +P+ C CGK+F R + + H+R HTGEKPY+C CG F
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAF--------- 52
Query: 146 SIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPY 204
SQ S L +H+R HT
Sbjct: 53 ----------SQNSGLINHQR------------------------------IHTSGPSS 71
Score = 63.6 bits (156), Expect = 1e-13
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLA 91
H+ K P+ C +C K+F LVQH++ H+G K + C ECGKAF L H
Sbjct: 5 SSGIHSGEK-PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Query: 92 VHTGNRPF 99
+HT
Sbjct: 64 IHTSGPSS 71
Score = 60.6 bits (148), Expect = 2e-12
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
H+GE+PY C C F +H+R+HTGEKPY C
Sbjct: 9 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCL 46
Score = 36.3 bits (85), Expect = 8e-04
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 221 KHRRIHTGEKPYVCE 235
IH+GEKPY C
Sbjct: 4 GSSGIHSGEKPYGCV 18
Score = 35.5 bits (83), Expect = 0.001
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
H HTG +PY+C C K F H HT
Sbjct: 33 HQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP 69
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 86.0 bits (214), Expect = 5e-22
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 57 NLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKD 116
+ + E + + C ECGK+F +L H HTG +P+ C CGK+F++++ +
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 117 HERTHTGEKPY 127
H R HTG P
Sbjct: 65 HHRVHTGSGPS 75
Score = 81.3 bits (202), Expect = 3e-20
Identities = 29/116 (25%), Positives = 37/116 (31%), Gaps = 49/116 (42%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
E + Y+C+ CG F S S+L H+R
Sbjct: 9 SEWQQRERRRYKCDECGKSF-------------------SHSSDLSKHRRT--------- 40
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPY 232
HTGE+PY+CD C FI H H R+HTG P
Sbjct: 41 ---------------------HTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 72.5 bits (179), Expect = 6e-17
Identities = 31/120 (25%), Positives = 39/120 (32%), Gaps = 49/120 (40%)
Query: 85 NLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGT 144
+ R + C CGKSF +++ H RTHTGEKPY+C+ CG F
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF-------- 56
Query: 145 ESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPY 204
QRS+L H R HTG P
Sbjct: 57 -----------IQRSHLIGHHR------------------------------VHTGSGPS 75
Score = 61.3 bits (150), Expect = 1e-12
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
R Y+CD C +F + KHRR HTGEKPY C+
Sbjct: 13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCD 50
Score = 36.3 bits (85), Expect = 9e-04
Identities = 2/18 (11%), Positives = 5/18 (27%)
Query: 218 HFKKHRRIHTGEKPYVCE 235
+ + Y C+
Sbjct: 5 SSGRSEWQQRERRRYKCD 22
Score = 34.3 bits (80), Expect = 0.004
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 8 HTGARPYECKTCKKTFVSKYTYKAHLVTH 36
HTG +PY+C C K F ++HL+ H
Sbjct: 41 HTGEKPYKCDECGKAF----IQRSHLIGH 65
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 85.7 bits (213), Expect = 9e-22
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 65 HSGSKDFVCT--ECGKAFGTLRNLEVHL-AVHTGNRPFIC--RVCGKSFVRKAEVKDHER 119
SGS C CG+ F + L H H + F C CGKSF K +K+H +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 120 THTGEKPYQCEFCGAQF 136
H+ + Y CEF G
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 75.7 bits (187), Expect = 4e-18
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 8 HTGARPYECKT--CKKTFVSKYTYKAHL-VTHTDRKRPFSCE--KCDKSFYTQQNLVQHE 62
+G+ C C + F ++ H H +K FSC C KSF +++L +H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQK-SFSCPEPACGKSFNFKKHLKEHM 60
Query: 63 KTHSGSKDFVCTECGKAFG 81
K HS ++D++C G + G
Sbjct: 61 KLHSDTRDYICEFSGPSSG 79
Score = 75.7 bits (187), Expect = 4e-18
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 169 HFNDKRYPCTS--CPKAFKRRRLLDYHIKAAHTGERPYQCD--ICNATFIYPEHFKKHRR 224
PC C + F R+ L++H K H ++ + C C +F + +H K+H +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 225 IHTGEKPYVCEV 236
+H+ + Y+CE
Sbjct: 62 LHSDTRDYICEF 73
Score = 68.7 bits (169), Expect = 2e-15
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 24/97 (24%)
Query: 121 HTGEKPYQCEF--CGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCT 178
+G C+F CG F S R L HK+ H + K + C
Sbjct: 2 SSGSSGMPCDFPGCGRIF-------------------SNRQYLNHHKKYQHIHQKSFSCP 42
Query: 179 --SCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATF 213
+C K+F ++ L H+K H+ R Y C+ +
Sbjct: 43 EPACGKSFNFKKHLKEHMKL-HSDTRDYICEFSGPSS 78
Score = 55.2 bits (134), Expect = 1e-10
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 197 AHTGERPYQCDI--CNATFIYPEHFKKHRRI-HTGEKPYVCE 235
+G CD C F ++ H++ H +K + C
Sbjct: 1 GSSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCP 42
Score = 29.4 bits (67), Expect = 0.23
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 4 HLVSHTGARPYECKTCKKTF 23
H+ H+ R Y C+ +
Sbjct: 59 HMKLHSDTRDYICEFSGPSS 78
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 84.5 bits (210), Expect = 2e-21
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 20/91 (21%)
Query: 115 KDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRA-THFNDK 173
RTH+GEKPY+C C A+F +Q ++ H N
Sbjct: 4 GSSGRTHSGEKPYECYICHARF-------------------TQSGTMKMHILQKHTENVA 44
Query: 174 RYPCTSCPKAFKRRRLLDYHIKAAHTGERPY 204
++ C C R+ L H++ H+ P
Sbjct: 45 KFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 81.4 bits (202), Expect = 3e-20
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 57 NLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTG--NRPFICRVCGKSFVRKAEV 114
+ +THSG K + C C F +++H+ F C C RK+++
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 115 KDHERT-HTGEKPY 127
H R H+ P
Sbjct: 62 GVHLRKQHSYSGPS 75
Score = 77.6 bits (192), Expect = 7e-19
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 21/93 (22%)
Query: 85 NLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGE--KPYQCEFCGAQFRFKGSS 142
+ H+G +P+ C +C F + +K H E + C C
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVI------ 55
Query: 143 GTESIDKLLLCFLSQRSNLQSHKRATHFNDKRY 175
+++S+L H R H
Sbjct: 56 -------------ARKSDLGVHLRKQHSYSGPS 75
Score = 65.6 bits (161), Expect = 2e-14
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHT-DRKRPFSCEKCDKSFYTQQNLVQHE 62
+H+G +PYEC C F T K H++ + F C CD + +L H
Sbjct: 6 SGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
Query: 63 KT-HSGSK 69
+ HS S
Sbjct: 66 RKQHSYSG 73
Score = 58.3 bits (142), Expect = 1e-11
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGE--KPYVCE 235
H+GE+PY+C IC+A F K H E + C
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCP 49
Score = 39.0 bits (92), Expect = 1e-04
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 218 HFKKHRRIHTGEKPYVCEV 236
R H+GEKPY C +
Sbjct: 2 SSGSSGRTHSGEKPYECYI 20
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 85.0 bits (211), Expect = 2e-21
Identities = 32/123 (26%), Positives = 46/123 (37%), Gaps = 26/123 (21%)
Query: 51 SFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRV--CGKSF 108
S + ++ + H C K + +L+ HL HTG +P+ C C F
Sbjct: 2 SSGSSGPDLEKRRIHYCDYP----GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF 57
Query: 109 VRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRAT 168
R E+ H R HTG KP+QC C F S+ +L H +
Sbjct: 58 ARSDELTRHYRKHTGAKPFQCGVCNRSF-------------------SRSDHLALHMK-R 97
Query: 169 HFN 171
H N
Sbjct: 98 HQN 100
Score = 81.5 bits (202), Expect = 5e-20
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 37 TDRKRPFSCEK--CDKSFYTQQNLVQHEKTHSGSKDFVCT--ECGKAFGTLRNLEVHLAV 92
+++R C+ C K + +L H +TH+G K + CT C F L H
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Query: 93 HTGNRPFICRVCGKSFVRKAEVKDHERTHT 122
HTG +PF C VC +SF R + H + H
Sbjct: 70 HTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 78.1 bits (193), Expect = 1e-18
Identities = 35/151 (23%), Positives = 53/151 (35%), Gaps = 55/151 (36%)
Query: 79 AFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC--EFCGAQF 136
+ G+ +H + P C K + + + +K H RTHTGEKPY+C E C +F
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF 57
Query: 137 RFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKA 196
++ L H R
Sbjct: 58 -------------------ARSDELTRHYRK----------------------------- 69
Query: 197 AHTGERPYQCDICNATFIYPEHFKKHRRIHT 227
HTG +P+QC +CN +F +H H + H
Sbjct: 70 -HTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 64.2 bits (157), Expect = 1e-13
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC--EKCDKSFYTQQNLVQH 61
H P C K + KAHL THT K P+ C E CD F L +H
Sbjct: 12 KRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEK-PYKCTWEGCDWRFARSDELTRH 66
Query: 62 EKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHT 94
+ H+G+K F C C ++F +L +H+ H
Sbjct: 67 YRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 61.5 bits (150), Expect = 2e-12
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 156 SQRSNLQSHKRATHFNDKRYPCT--SCPKAFKRRRLLDYHIKAAHTGERPYQCDI--CNA 211
+R + C C K + + L H++ HTGE+PY+C C+
Sbjct: 4 GSSGPDLEKRR-------IHYCDYPGCTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDW 55
Query: 212 TFIYPEHFKKHRRIHTGEKPYVCEV 236
F + +H R HTG KP+ C V
Sbjct: 56 RFARSDELTRHYRKHTGAKPFQCGV 80
Score = 36.5 bits (85), Expect = 0.001
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTD 38
H HTGA+P++C C ++F H+ H +
Sbjct: 66 HYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 78.3 bits (194), Expect = 4e-19
Identities = 14/66 (21%), Positives = 26/66 (39%)
Query: 64 THSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTG 123
+ S C+EC + + L +H +H +RPF C C + + + H + G
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Query: 124 EKPYQC 129
+
Sbjct: 63 DMSGPS 68
Score = 75.2 bits (186), Expect = 5e-18
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 20/88 (22%)
Query: 91 AVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKL 150
+ + P C C S KA ++ HER H ++P++C +C
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDT-------------- 47
Query: 151 LLCFLSQRSNLQSHKRATHFNDKRYPCT 178
Q SNL H + D P +
Sbjct: 48 -----KQPSNLSKHMK-KFHGDMSGPSS 69
Score = 71.4 bits (176), Expect = 1e-16
Identities = 16/114 (14%), Positives = 31/114 (27%), Gaps = 49/114 (42%)
Query: 119 RTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCT 178
+ + P +C C S ++ L+ H+R
Sbjct: 2 SSGSSGHPEKCSECSYSC-------------------SSKAALRIHERI----------- 31
Query: 179 SCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPY 232
H +RP++C+ C+ P + KH + G+
Sbjct: 32 -------------------HCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG 66
Score = 64.8 bits (159), Expect = 4e-14
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 35 THTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHT 94
+ + P C +C S ++ L HE+ H + F C C NL H+
Sbjct: 3 SGSSGH-PEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Query: 95 G 95
G
Sbjct: 62 G 62
Score = 64.1 bits (157), Expect = 8e-14
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 7 SHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHS 66
S + P +C C + SK + H H + PF C C NL +H K
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDR-PFKCNYCSFDTKQPSNLSKHMKKFH 61
Query: 67 GSK 69
G
Sbjct: 62 GDM 64
Score = 57.5 bits (140), Expect = 2e-11
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
+ P +C C+ + + H RIH ++P+ C
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCN 41
Score = 38.2 bits (90), Expect = 2e-04
Identities = 8/42 (19%), Positives = 11/42 (26%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
H H RP++C C H+ S
Sbjct: 28 HERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
Score = 27.5 bits (62), Expect = 1.1
Identities = 2/12 (16%), Positives = 3/12 (25%)
Query: 224 RIHTGEKPYVCE 235
+ P C
Sbjct: 2 SSGSSGHPEKCS 13
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 77.2 bits (191), Expect = 2e-18
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 39 RKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT--ECGKAFGTLRNLEVHLAVHTGN 96
C K++ +L H +TH+G K + C CG F L H HTG+
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 97 RPFICRVCGKSFVRKAEVKDHERTH 121
RPF C+ C ++F R + H + H
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 76.0 bits (188), Expect = 5e-18
Identities = 34/136 (25%), Positives = 47/136 (34%), Gaps = 51/136 (37%)
Query: 93 HTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC--EFCGAQFRFKGSSGTESIDKL 150
T CGK++ + + +K H RTHTGEKPY C + CG +F
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKF-------------- 47
Query: 151 LLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICN 210
++ L H R HTG RP+QC C+
Sbjct: 48 -----ARSDELTRHYR------------------------------KHTGHRPFQCQKCD 72
Query: 211 ATFIYPEHFKKHRRIH 226
F +H H + H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 62.9 bits (154), Expect = 3e-13
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 169 HFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDI--CNATFIYPEHFKKHRRIH 226
C K + + L H++ HTGE+PY CD C F + +H R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 227 TGEKPYVCEV 236
TG +P+ C+
Sbjct: 61 TGHRPFQCQK 70
Score = 52.1 bits (126), Expect = 3e-09
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 4 HLVSHTGARPYECK--TCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQH 61
HL +HTG +PY C C F H HT + PF C+KCD++F +L H
Sbjct: 26 HLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR-PFQCQKCDRAFSRSDHLALH 84
Query: 62 EKTH 65
K H
Sbjct: 85 MKRH 88
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 73.6 bits (181), Expect = 3e-17
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 22/95 (23%)
Query: 93 HTGNRPFICRVCGKSFVRKAEVKDHERTHT---GEKPYQCEFCGAQFRFKGSSGTESIDK 149
+G+ C +CG + +KA + H+R H + CEFCG +F
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFE------------ 49
Query: 150 LLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKAF 184
+ ++ +H+ +H P S +
Sbjct: 50 -------KPDSVAAHRSKSHPALLLAPQESSGPSS 77
Score = 70.9 bits (174), Expect = 3e-16
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 8 HTGARPYECKTCKKTFVSKYTYKAHLVTHTDRK--RPFSCEKCDKSFYTQQNLVQHEKTH 65
+G+ +C+ C T K + H H + F CE C K F ++ H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 66 SGSKDFVCTE-CGKAFG 81
+ E G + G
Sbjct: 62 HPALLLAPQESSGPSSG 78
Score = 69.4 bits (170), Expect = 1e-15
Identities = 17/69 (24%), Positives = 20/69 (28%), Gaps = 3/69 (4%)
Query: 65 HSGSKDFVCTECGKAFGTLRNLEVHLAVHT---GNRPFICRVCGKSFVRKAEVKDHERTH 121
SGS C CG +L H H F C CGK F + V H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 122 TGEKPYQCE 130
+
Sbjct: 62 HPALLLAPQ 70
Score = 63.2 bits (154), Expect = 2e-13
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 23/96 (23%)
Query: 121 HTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATH---FNDKRYPC 177
+G QCE CG R Q+++L H+R H R+PC
Sbjct: 2 SSGSSGLQCEICGFTCR-------------------QKASLNWHQR-KHAETVAALRFPC 41
Query: 178 TSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATF 213
C K F++ + H +H + +
Sbjct: 42 EFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSS 77
Score = 62.0 bits (151), Expect = 5e-13
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 41 RPFSCEKCDKSFYTQQNLVQHEKTHS---GSKDFVCTECGKAFGTLRNLEVHLAV-HTGN 96
CE C + + +L H++ H+ + F C CGK F ++ H + H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 97 RPFICRVCGKSF 108
G S
Sbjct: 66 LLAPQESSGPSS 77
Score = 55.9 bits (135), Expect = 1e-10
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHT---GEKPYVCEV 236
+G QC+IC T H+R H + CE
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEF 43
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 69.1 bits (170), Expect = 9e-16
Identities = 17/111 (15%), Positives = 26/111 (23%), Gaps = 47/111 (42%)
Query: 118 ERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPC 177
E T GE Y+C+ C + + SN H +H
Sbjct: 2 EFTKEGEHTYRCKVCSRVY-------------------THISNFCRHYVTSH-------- 34
Query: 178 TSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTG 228
+ Y C C F ++ H +I
Sbjct: 35 --------------------KRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 67.6 bits (166), Expect = 3e-15
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 62 EKTHSGSKDFVCTECGKAFGTLRNLEVHL--AVHTGNRPFICRVCGKSFVRKAEVKDHER 119
E T G + C C + + + N H + + + C C K F RK + H +
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Query: 120 THTG 123
Sbjct: 62 IIHK 65
Score = 60.6 bits (148), Expect = 1e-12
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 8 HTGARPYECKTCKKTFVSKYTYKAHLVT--HTDRKRPFSCEKCDKSFYTQQNLVQHEKTH 65
G Y CK C + + + H VT + K + C C K F + N+ H K
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVK-VYPCPFCFKEFTRKDNMTAHVKII 63
Query: 66 SG 67
Sbjct: 64 HK 65
Score = 57.9 bits (141), Expect = 1e-11
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRI--HTGEKPYVCEV 236
GE Y+C +C+ + + +F +H K Y C
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPF 45
Score = 33.7 bits (78), Expect = 0.006
Identities = 8/32 (25%), Positives = 10/32 (31%)
Query: 6 VSHTGARPYECKTCKKTFVSKYTYKAHLVTHT 37
+ Y C C K F K AH+
Sbjct: 33 SHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 29.4 bits (67), Expect = 0.22
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 224 RIHTGEKPYVCEV 236
GE Y C+V
Sbjct: 3 FTKEGEHTYRCKV 15
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 67.5 bits (166), Expect = 4e-15
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 19/73 (26%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLS 156
R F+C VC ++F R+ +K H R+HT EKPY C C F +
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAF-------------------T 41
Query: 157 QRSNLQSHKRATH 169
+R L H + H
Sbjct: 42 RRDLLIRHAQKIH 54
Score = 63.3 bits (155), Expect = 1e-13
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHE-RTHTGEK 125
+ FVC C +AF +L+ H HT +P+ C +C ++F R+ + H + H+G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 57.5 bits (140), Expect = 2e-11
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 41 RPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLA-VHTGN 96
R F CE C ++F Q++L +H ++H+ K + C C +AF L H +H+GN
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 54.8 bits (133), Expect = 1e-10
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 173 KRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKH-RRIHTGEK 230
+ + C C +AF R+ L H ++ HT E+PY C +CN F + +H ++IH+G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 53.3 bits (129), Expect = 5e-10
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 202 RPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCEV 236
R + C++C F EH K+H R HT EKPY C +
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGL 35
Score = 49.0 bits (118), Expect = 2e-08
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHE-KTHSG 67
R + C+ C + F + K H +HT+ K P+ C C+++F + L++H K HSG
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK-PYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 35.9 bits (84), Expect = 8e-04
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDR 39
H SHT +PY C C + F T + L+ H +
Sbjct: 21 HYRSHTNEKPYPCGLCNRAF----TRRDLLIRHAQK 52
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 64.7 bits (157), Expect = 5e-14
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 57 NLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKD 116
+ + +K H G + C++CG F + + + + +C C K ++A +
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAALNK 57
Query: 117 HERTHTGEKPY 127
E +G+K
Sbjct: 58 DEGNESGKKTS 68
Score = 53.1 bits (127), Expect = 8e-10
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 9/74 (12%)
Query: 159 SNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEH 218
+ ++ H D+ C+ C F RR + + + C+ C
Sbjct: 4 GSSGKRQK-IHLGDRSQKCSKCGIIFIRR--------STLSRRKTPMCEKCRKDSCQEAA 54
Query: 219 FKKHRRIHTGEKPY 232
K +G+K
Sbjct: 55 LNKDEGNESGKKTS 68
Score = 48.5 bits (115), Expect = 4e-08
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 8/68 (11%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEK 63
H G R +C C F+ + T R++ CEKC K + L + E
Sbjct: 9 RQKIHLGDRSQKCSKCGIIFIRRSTLS--------RRKTPMCEKCRKDSCQEAALNKDEG 60
Query: 64 THSGSKDF 71
SG K
Sbjct: 61 NESGKKTS 68
Score = 44.3 bits (104), Expect = 1e-06
Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 28/95 (29%)
Query: 110 RKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATH 169
++ H G++ +C CG F +RS L
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIF-------------------IRRSTLSRR----- 37
Query: 170 FNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPY 204
K C C K + L+ + +G++
Sbjct: 38 ---KTPMCEKCRKDSCQEAALNKD-EGNESGKKTS 68
Score = 42.7 bits (100), Expect = 5e-06
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 81 GTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQF 136
G+ + +H G+R C CG F+R++ T + K CE C
Sbjct: 1 GSSGSSGKRQKIHLGDRSQKCSKCGIIFIRRS-------TLSRRKTPMCEKCRKDS 49
Score = 30.8 bits (69), Expect = 0.073
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 7/38 (18%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
H G+R +C C FI R + K +CE
Sbjct: 13 HLGDRSQKCSKCGIIFI-------RRSTLSRRKTPMCE 43
Score = 30.8 bits (69), Expect = 0.083
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 216 PEHFKKHRRIHTGEKPYVCE 235
K ++IH G++ C
Sbjct: 3 SGSSGKRQKIHLGDRSQKCS 22
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 63.8 bits (156), Expect = 7e-14
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHE-RTHTGEKPYQCEFCGAQF 136
+ + +P+IC+ CGK F R + H + HT E+P++C+ +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 59.1 bits (144), Expect = 4e-12
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 194 IKAAHTGERPYQCDICNATFIYPEHFKKH-RRIHTGEKPYVCEV 236
++ + +PY C C F P+H H +++HT E+P+ C+V
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 58.4 bits (142), Expect = 7e-12
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 61 HEKTHSGSKDFVCTECGKAFGTLRNLEVHL-AVHTGNRPFICRVCGKSF 108
+ S K ++C CGK F +L H+ VHT RP C+V
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 56.0 bits (136), Expect = 4e-11
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 167 ATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATF 213
++ K Y C SC K F R L+ HIK HT ERP++C + +
Sbjct: 5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 52.2 bits (126), Expect = 1e-09
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 19/68 (27%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ + KPY C+ CG F S+ +L H + H +++ +
Sbjct: 3 SGSSGSVGKPYICQSCGKGF-------------------SRPDHLNGHIKQVHTSERPHK 43
Query: 177 CTSCPKAF 184
C
Sbjct: 44 CQVWVSGP 51
Score = 48.3 bits (116), Expect = 3e-08
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 35 THTDRKRPFSCEKCDKSFYTQQNLVQHEK-THSGSKDFVCTECGKAFGT 82
+ + K P+ C+ C K F +L H K H+ + C +
Sbjct: 6 SGSVGK-PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 45.6 bits (109), Expect = 3e-07
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 7 SHTGARPYECKTCKKTFVSKYTYKAHLVTHTDR----KRPFSCEKCDKSF 52
S + +PY C++C K F + HL H + +RP C+
Sbjct: 6 SGSVGKPYICQSCGKGF----SRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 64.2 bits (157), Expect = 1e-13
Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 3/81 (3%)
Query: 44 SCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTE--CGKAFGTLRNLEVHLAVHTGNRPFIC 101
E C K+F L H+ +H+ + C C K F L+ H VH G
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 102 RVCGKSFVRKAE-VKDHERTH 121
C +K H
Sbjct: 65 DSCSFVGKTWTLYLKHVAECH 85
Score = 63.0 bits (154), Expect = 3e-13
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 22/97 (22%)
Query: 104 CGKSFVRKAEVKDHERTHTGEKPYQC--EFCGAQFRFKGSSGTESIDKLLLCFLSQRSNL 161
CGK+F + ++K H+ +HT + PY+C E C +F S S L
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRF-------------------SLPSRL 49
Query: 162 QSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAH 198
+ H++ H SC K L H+ H
Sbjct: 50 KRHEK-VHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 56.9 bits (138), Expect = 4e-11
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 176 PCTSCPKAFKRRRLLDYHIKAAHTGERPYQCD--ICNATFIYPEHFKKHRRIHTGEKPYV 233
+C KAFK+ L H + HT + PY+C C+ F P K+H ++H G
Sbjct: 5 HFENCGKAFKKHNQLKVHQFS-HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKK 63
Query: 234 CEV 236
+
Sbjct: 64 DDS 66
Score = 56.1 bits (136), Expect = 1e-10
Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 15 ECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC--EKCDKSFYTQQNLVQHEKTHSGSKDFV 72
+ C K F K H +HT + P+ C E CDK F L +HEK H+G
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQL-PYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKK 63
Query: 73 CTECGKAFGTLRNLEVH 89
C T H
Sbjct: 64 DDSCSFVGKTWTLYLKH 80
Score = 43.4 bits (103), Expect = 3e-06
Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 4/65 (6%)
Query: 4 HLVSHTGARPYECK--TCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQH 61
H SHT PYEC C K F K H H + C T ++H
Sbjct: 22 HQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA-GYPCKKDDSCSFVGKTWTLYLKH 80
Query: 62 -EKTH 65
+ H
Sbjct: 81 VAECH 85
Score = 41.1 bits (97), Expect = 2e-05
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 204 YQCDI--CNATFIYPEHFKKHRRIHTGEKPYVCE 235
Y C C F K H+ HT + PY C
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 35
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 64.8 bits (157), Expect = 1e-13
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHL-VTHTDRKRPFSCEKC---DKSFYTQQNLV 59
+ TGA + CK C + + H+ T R + S +++L+
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLL 69
Query: 60 QHEKTHSGSKDFVCTECGKAFGTLRNLEVHLA 91
+ E K C CG +F +L++L VH+
Sbjct: 70 EMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 60.5 bits (146), Expect = 6e-12
Identities = 18/111 (16%), Positives = 31/111 (27%), Gaps = 8/111 (7%)
Query: 25 SKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQH-----EKTHSGSKDFVCTECGKA 79
S + K + T F C+ C ++ T L H + +
Sbjct: 3 SGSSGKLYGSIFTG-ASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 80 FGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDH--ERTHTGEKPYQ 128
R+L + C CG SF ++ H + H +
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 59.8 bits (144), Expect = 9e-12
Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 20/124 (16%)
Query: 85 NLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDH--ERTHTGEKPYQCEFCGAQFRFKGSS 142
+ +++ ++ TG F C+ C ++ E+ H E H + ++ + + K
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK--- 62
Query: 143 GTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYH-IKAAHTGE 201
++ +L + K C C +F+ + L H IK H +
Sbjct: 63 -------------PRKRSLLEMEG-KEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQK 108
Query: 202 RPYQ 205
Sbjct: 109 VSGP 112
Score = 53.2 bits (127), Expect = 2e-09
Identities = 18/125 (14%), Positives = 34/125 (27%), Gaps = 26/125 (20%)
Query: 114 VKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRAT----H 169
K + TG ++C+ C A + L H T
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYD-------------------TLVELTVHMNETGHYRD 47
Query: 170 FNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKH--RRIHT 227
N + + R+R L + ++ +C C +F + H + H
Sbjct: 48 DNHETDNNNPKRWSKPRKRSLLEM-EGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHY 106
Query: 228 GEKPY 232
+
Sbjct: 107 QKVSG 111
Score = 32.8 bits (74), Expect = 0.036
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 195 KAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
+ TG ++C C+A + H TG
Sbjct: 11 GSIFTGASKFRCKDCSAAYDTLVELTVHMNE-TGHYRDDNH 50
Score = 28.6 bits (63), Expect = 1.1
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 218 HFKKHRRIHTGEKPYVCE 235
K + I TG + C+
Sbjct: 6 SGKLYGSIFTGASKFRCK 23
Score = 28.2 bits (62), Expect = 1.2
Identities = 5/37 (13%), Positives = 12/37 (32%)
Query: 1 MEDHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHT 37
+ + + +C C +F S H++
Sbjct: 68 LLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 2e-13
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ +G RP+ C CGK+F R + + +H + H EK
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 57.5 bits (140), Expect = 1e-11
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
+GERPY C+ C F H +H + H EK
Sbjct: 7 GSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 46.4 bits (111), Expect = 1e-07
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ +GE+PY C CG F + S+L H + HF +K
Sbjct: 3 SGSSGSGERPYGCNECGKNF-------------------GRHSHLIEHLK-RHFREKSSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 41.3 bits (98), Expect = 6e-06
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + + P+ C +C K+F +L++H K H K +
Sbjct: 3 SGSSGSGER-PYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 40.6 bits (96), Expect = 1e-05
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 163 SHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
S + ++ Y C C K F R L H+K H E+
Sbjct: 2 SSGS-SGSGERPYGCNECGKNFGRHSHLIEHLK-RHFREKSSGP 43
Score = 31.7 bits (73), Expect = 0.021
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 222 HRRIHTGEKPYVC 234
+GE+PY C
Sbjct: 3 SGSSGSGERPYGC 15
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 62.1 bits (152), Expect = 2e-13
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPY 232
GE+PY C+IC F + + K H RIHTG P
Sbjct: 6 SGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 59.0 bits (144), Expect = 3e-12
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPY 127
G +P+ C +CG F +K H R HTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 48.6 bits (117), Expect = 2e-08
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 61 HEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPF 99
+ G K + C CG F L+ L+ HL +HTG+ P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 48.3 bits (116), Expect = 3e-08
Identities = 18/88 (20%), Positives = 21/88 (23%), Gaps = 49/88 (55%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ GEKPY CE CG +F L+SH R
Sbjct: 2 SSGSSGGEKPYPCEICGTRF-------------------RHLQTLKSHLR---------- 32
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPY 204
HTG P
Sbjct: 33 --------------------IHTGSGPS 40
Score = 41.7 bits (99), Expect = 5e-06
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+ K P+ CE C F Q L H + H+GS
Sbjct: 1 GSSGSSGGEK-PYPCEICGTRFRHLQTLKSHLRIHTGSG 38
Score = 40.9 bits (97), Expect = 9e-06
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFS 44
S G +PY C+ C F T K+HL HT P S
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSG-PSS 41
Score = 31.3 bits (72), Expect = 0.028
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 222 HRRIHTGEKPYVCEV 236
GEKPY CE+
Sbjct: 2 SSGSSGGEKPYPCEI 16
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.7 bits (151), Expect = 3e-13
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 88 VHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +PF C +CGKSF ++ + H HT EKP
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 60.6 bits (148), Expect = 8e-13
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+P++CDIC +F +H +HT EKP
Sbjct: 7 GTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 49.0 bits (118), Expect = 1e-08
Identities = 17/91 (18%), Positives = 22/91 (24%), Gaps = 49/91 (53%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKP++C+ CG F RS L H
Sbjct: 3 SGSSGTGEKPFKCDICGKSF-------------------CGRSRLNRHSM---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQCD 207
HT E+P
Sbjct: 34 --------------------VHTAEKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T K PF C+ C KSF + L +H H+ K +
Sbjct: 2 SSGSSGTGEK-PFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCE 46
S TG +P++C C K+F + H + HT K P
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEK-PSGPS 44
Score = 34.0 bits (79), Expect = 0.003
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 222 HRRIHTGEKPYVCE 235
TGEKP+ C+
Sbjct: 3 SGSSGTGEKPFKCD 16
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 3e-13
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ +G RPF C CGK F R++ + H R H+ EK
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 58.7 bits (143), Expect = 4e-12
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 195 KAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
++ +GERP++C+ C F H H R+H+ EK
Sbjct: 4 GSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 45.6 bits (109), Expect = 2e-07
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ +GE+P++C CG F +RS+L H R H +K
Sbjct: 3 SGSSGSGERPFKCNECGKGF-------------------GRRSHLAGHLR-LHSREKSSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 39.8 bits (94), Expect = 3e-05
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + + PF C +C K F + +L H + HS K +
Sbjct: 3 SGSSGSGER-PFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S +G RP++C C K F + HL H+ K
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREK-SSGP 43
Score = 30.2 bits (69), Expect = 0.061
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 221 KHRRIHTGEKPYVCE 235
+GE+P+ C
Sbjct: 2 SSGSSGSGERPFKCN 16
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 61.4 bits (150), Expect = 4e-13
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCG 133
+ +G +PF C CGK F ++ H+R+H+GEKP G
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 57.9 bits (141), Expect = 7e-12
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
+GE+P++C+ C F H+R H+GEKP
Sbjct: 7 GSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 47.9 bits (115), Expect = 4e-08
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ +GEKP++CE CG F S SH+R +H +K
Sbjct: 3 SGSSGSGEKPFKCEECGKGF-------------------YTNSQCYSHQR-SHSGEKPSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 42.9 bits (102), Expect = 2e-06
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECG 77
+ + + K PF CE+C K FYT H+++HSG K G
Sbjct: 2 SSGSSGSGEK-PFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP-SSG 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCE 46
S +G +P++C+ C K F + +H +H+ K P
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEK-PSGPS 44
Score = 33.3 bits (77), Expect = 0.005
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 222 HRRIHTGEKPYVCE 235
+GEKP+ CE
Sbjct: 3 SGSSGSGEKPFKCE 16
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 61.0 bits (149), Expect = 5e-13
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPY 232
GE+PY+C+ C A F+ H + H IHTG P
Sbjct: 6 SGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 57.9 bits (141), Expect = 8e-12
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPY 127
G +P+ C CG FV+ A ++ H HTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 49.1 bits (118), Expect = 1e-08
Identities = 18/88 (20%), Positives = 25/88 (28%), Gaps = 49/88 (55%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ GEKPY+CE CGA+F Q ++L++H
Sbjct: 2 SSGSSGGEKPYKCETCGARF-------------------VQVAHLRAHVL---------- 32
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPY 204
HTG P
Sbjct: 33 --------------------IHTGSGPS 40
Score = 46.0 bits (110), Expect = 2e-07
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 61 HEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPF 99
+ G K + C CG F + +L H+ +HTG+ P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 38.7 bits (91), Expect = 6e-05
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHT 37
S G +PY+C+TC FV +AH++ HT
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHT 35
Score = 38.3 bits (90), Expect = 9e-05
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+ K P+ CE C F +L H H+GS
Sbjct: 2 SSGSSGGEK-PYKCETCGARFVQVAHLRAHVLIHTGSG 38
Score = 31.3 bits (72), Expect = 0.023
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 222 HRRIHTGEKPYVCE 235
GEKPY CE
Sbjct: 2 SSGSSGGEKPYKCE 15
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 7e-13
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 88 VHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG P+ C CGK+F RK ++ H+RTH GEKP
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 56.4 bits (137), Expect = 3e-11
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TGE PY+C C F H+R H GEKP
Sbjct: 7 GTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 47.1 bits (113), Expect = 6e-08
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGE PY+C CG F S++ L SH+R TH +K
Sbjct: 3 SGSSGTGENPYECHECGKAF-------------------SRKYQLISHQR-THAGEKPSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 39.0 bits (92), Expect = 5e-05
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S TG PYEC C K F KY +H TH K P
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEK-PSGP 43
Score = 38.6 bits (91), Expect = 6e-05
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ T P+ C +C K+F + L+ H++TH+G K +
Sbjct: 3 SGSSGTGEN-PYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.008
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 222 HRRIHTGEKPYVC 234
TGE PY C
Sbjct: 3 SGSSGTGENPYEC 15
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 7e-13
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG PFIC CGK F K + H++ HTGE+P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 57.5 bits (140), Expect = 1e-11
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TGE P+ C C F + + H++IHTGE+P
Sbjct: 7 GTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 50.6 bits (122), Expect = 3e-09
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 61 HEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFIC 101
+ +G F+C+ECGK F NL +H +HTG RP
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 47.5 bits (114), Expect = 5e-08
Identities = 17/90 (18%), Positives = 24/90 (26%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGE P+ C CG F + ++NL H++
Sbjct: 3 SGSSGTGENPFICSECGKVF-------------------THKTNLIIHQK---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTGERP
Sbjct: 34 --------------------IHTGERPSGP 43
Score = 41.7 bits (99), Expect = 5e-06
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T PF C +C K F + NL+ H+K H+G + +
Sbjct: 2 SSGSSGTGEN-PFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 37.1 bits (87), Expect = 2e-04
Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S TG P+ C C K F K H HT + P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGER-PSGP 43
Score = 33.6 bits (78), Expect = 0.004
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 222 HRRIHTGEKPYVC 234
TGE P++C
Sbjct: 3 SGSSGTGENPFIC 15
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 7e-13
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 88 VHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ +G +P+ C CGK+F +K+ + H+RTHTGEKP
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 58.3 bits (142), Expect = 6e-12
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
+GE+PY C+ C TF H+R HTGEKP
Sbjct: 7 GSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 3e-08
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 20/62 (32%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ +GEKPY C CG F SQ+S L +H+R TH +K
Sbjct: 3 SGSSGSGEKPYGCNECGKTF-------------------SQKSILSAHQR-THTGEKPSG 42
Query: 177 CT 178
+
Sbjct: 43 PS 44
Score = 42.1 bits (100), Expect = 4e-06
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTE 75
+ + + K P+ C +C K+F + L H++TH+G K +
Sbjct: 2 SSGSSGSGEK-PYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSS 45
Score = 39.4 bits (93), Expect = 3e-05
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCE 46
S +G +PY C C KTF K AH THT K P
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEK-PSGPS 44
Score = 33.3 bits (77), Expect = 0.005
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 222 HRRIHTGEKPYVC 234
+GEKPY C
Sbjct: 3 SGSSGSGEKPYGC 15
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 9e-13
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG +P+ C CGK+F RK+ + H+++HTGE+
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 56.0 bits (136), Expect = 4e-11
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TGE+PY+C C F H++ HTGE+
Sbjct: 7 GTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 48.7 bits (117), Expect = 2e-08
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY+C CG F +++S L H++ +H ++
Sbjct: 3 SGSSGTGEKPYKCSDCGKAF-------------------TRKSGLHIHQQ-SHTGERHSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 40.6 bits (96), Expect = 1e-05
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 163 SHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
S + +K Y C+ C KAF R+ L H + +HTGER
Sbjct: 2 SSGS-SGTGEKPYKCSDCGKAFTRKSGLHIH-QQSHTGERHSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ T K P+ C C K+F + L H+++H+G + +
Sbjct: 3 SGSSGTGEK-PYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 39.0 bits (92), Expect = 5e-05
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S TG +PY+C C K F K H +HT +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGER-HSGP 43
Score = 34.0 bits (79), Expect = 0.003
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 221 KHRRIHTGEKPYVC 234
TGEKPY C
Sbjct: 2 SSGSSGTGEKPYKC 15
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 9e-13
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +P+IC CGKSF++K+ + H R HTGEKP
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 59.4 bits (145), Expect = 2e-12
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+PY C+ C +FI H +HRRIHTGEKP
Sbjct: 7 GTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 4e-08
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY C CG F Q+S+L H+R H +K
Sbjct: 3 SGSSGTGEKPYICNECGKSF-------------------IQKSHLNRHRR-IHTGEKPSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 41.7 bits (99), Expect = 5e-06
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTE 75
+ + T K P+ C +C KSF + +L +H + H+G K +
Sbjct: 2 SSGSSGTGEK-PYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS 45
Score = 35.2 bits (82), Expect = 0.001
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 221 KHRRIHTGEKPYVCE 235
TGEKPY+C
Sbjct: 2 SSGSSGTGEKPYICN 16
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 1e-12
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG R + C CGK+F RK+ + H+R HTGEKP
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 9e-12
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TGER Y+C C F H+RIHTGEKP
Sbjct: 7 GTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGE+ Y+C CG F +++S L H+R H +K
Sbjct: 3 SGSSGTGERHYECSECGKAF-------------------ARKSTLIMHQR-IHTGEKPSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 39.8 bits (94), Expect = 3e-05
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S TG R YEC C K F K T H HT K P
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEK-PSGP 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 163 SHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
S + ++ Y C+ C KAF R+ L H + HTGE+P
Sbjct: 2 SSGS-SGTGERHYECSECGKAFARKSTLIMHQR-IHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 6e-05
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ T + + C +C K+F + L+ H++ H+G K +
Sbjct: 3 SGSSGTGER-HYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.002
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 221 KHRRIHTGEKPYVC 234
TGE+ Y C
Sbjct: 2 SSGSSGTGERHYEC 15
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 60.2 bits (147), Expect = 1e-12
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 91 AVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ +G +PF C C K+F K+ + H++TH EKP
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 58.3 bits (142), Expect = 5e-12
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 195 KAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
+ +GE+P+ C C F + H++ H EKP
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 41.4 bits (98), Expect = 7e-06
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 35 THTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ K PF C C+K+F ++ L+ H++TH+ K +
Sbjct: 4 GSSGEK-PFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 40.6 bits (96), Expect = 1e-05
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 20/62 (32%)
Query: 118 ERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPC 177
+GEKP+ C C F S +S L H++ TH +K
Sbjct: 2 SSGSSGEKPFGCSCCEKAF-------------------SSKSYLLVHQQ-THAEEKPSGP 41
Query: 178 TS 179
+S
Sbjct: 42 SS 43
Score = 38.7 bits (91), Expect = 7e-05
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 7 SHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
+G +P+ C C+K F SK H TH + K P
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEK-PSGP 41
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 167 ATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
+ +K + C+ C KAF + L H + H E+P
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVH-QQTHAEEKPSGP 41
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 1e-12
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 88 VHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ G + + C VCGK F + + ++ H+R HTGEKP
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 59.8 bits (146), Expect = 2e-12
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
GE+ Y+CD+C F H + H+R+HTGEKP
Sbjct: 7 GMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 8e-09
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ GEK Y+C+ CG +F SQ S+LQ+H+R H +K
Sbjct: 3 SGSSGMGEKCYKCDVCGKEF-------------------SQSSHLQTHQR-VHTGEKPSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 37.9 bits (89), Expect = 1e-04
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ K + C+ C K F +L H++ H+G K +
Sbjct: 3 SGSSGMGEK-CYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 36.4 bits (85), Expect = 4e-04
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S G + Y+C C K F + H HT K P
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEK-PSGP 43
Score = 34.0 bits (79), Expect = 0.003
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 222 HRRIHTGEKPYVCEV 236
GEK Y C+V
Sbjct: 3 SGSSGMGEKCYKCDV 17
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 1e-12
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +P+ C VCGK+FV A + H R HT E
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 59.8 bits (146), Expect = 1e-12
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+PY C++C F+ H +H R+HT E
Sbjct: 7 GTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 46.4 bits (111), Expect = 1e-07
Identities = 16/91 (17%), Positives = 19/91 (20%), Gaps = 49/91 (53%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY C CG F ++L H R
Sbjct: 3 SGSSGTGEKPYSCNVCGKAF-------------------VLSAHLNQHLR---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQCD 207
HT E
Sbjct: 34 --------------------VHTQETLSGPS 44
Score = 38.3 bits (90), Expect = 8e-05
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ T K P+SC C K+F +L QH + H+ +
Sbjct: 3 SGSSGTGEK-PYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 36.7 bits (86), Expect = 3e-04
Identities = 14/43 (32%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCE 46
S TG +PY C C K FV HL HT
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQET-LSGPS 44
Score = 34.4 bits (80), Expect = 0.002
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 221 KHRRIHTGEKPYVCEV 236
TGEKPY C V
Sbjct: 2 SSGSSGTGEKPYSCNV 17
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 1e-12
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG RP+IC VCGK+F ++ + H++ HTGEKP
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 9e-12
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TGERPY C +C F + KH++IHTGEKP
Sbjct: 7 GTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 4e-08
Identities = 19/90 (21%), Positives = 25/90 (27%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGE+PY C CG F + RSNL H++
Sbjct: 3 SGSSGTGERPYICTVCGKAF-------------------TDRSNLIKHQK---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTGE+P
Sbjct: 34 --------------------IHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 8e-05
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVC 73
+ + T + P+ C C K+F + NL++H+K H+G K
Sbjct: 2 SSGSSGTGER-PYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 2e-04
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEK 47
S TG RPY C C K F + H HT K P
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEK-PSGPSS 45
Score = 34.4 bits (80), Expect = 0.002
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 222 HRRIHTGEKPYVC 234
TGE+PY+C
Sbjct: 3 SGSSGTGERPYIC 15
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 1e-12
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ G +P+ C CGKSF + H THT EKP
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 57.6 bits (140), Expect = 1e-11
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
GE+PYQC C +F +H HT EKP
Sbjct: 7 GEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 47.2 bits (113), Expect = 5e-08
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 60 QHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFIC 101
+ G K + C+ECGK+F L H HT +P
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 46.4 bits (111), Expect = 1e-07
Identities = 17/63 (26%), Positives = 20/63 (31%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ GEKPYQC CG F S L H TH +K
Sbjct: 3 SGSSGEGEKPYQCSECGKSF-------------------SGSYRLTQHWI-THTREKPSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 39.8 bits (94), Expect = 2e-05
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 163 SHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
S + +K Y C+ C K+F L H HT E+P
Sbjct: 2 SSGS-SGEGEKPYQCSECGKSFSGSYRLTQH-WITHTREKPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S G +PY+C C K+F Y H +THT K P
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREK-PSGP 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + K P+ C +C KSF L QH TH+ K +
Sbjct: 2 SSGSSGEGEK-PYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 30.6 bits (70), Expect = 0.048
Identities = 6/15 (40%), Positives = 6/15 (40%)
Query: 221 KHRRIHTGEKPYVCE 235
GEKPY C
Sbjct: 2 SSGSSGEGEKPYQCS 16
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 1e-12
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ + +P+ C CGK + R+ + H+R H GEK
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 55.6 bits (135), Expect = 5e-11
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
+ E+PY+C+ C + + H+R+H GEK
Sbjct: 7 GSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 50.2 bits (121), Expect = 5e-09
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 60 QHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFIC 101
+ S K + C +CGK + NL++H VH G +
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ + EKPY+CE CG + ++R NL H+R H +K
Sbjct: 3 SGSSGSVEKPYKCEDCGKGY-------------------NRRLNLDMHQR-VHMGEKTSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 41.7 bits (99), Expect = 5e-06
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 163 SHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
S + +K Y C C K + RR LD H + H GE+
Sbjct: 2 SSGS-SGSVEKPYKCEDCGKGYNRRLNLDMH-QRVHMGEKTSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + + K P+ CE C K + + NL H++ H G K +
Sbjct: 2 SSGSSGSVEK-PYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 38.2 bits (90), Expect = 1e-04
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEK 47
S + +PY+C+ C K + + H H K
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEK-TSGPSS 45
Score = 34.0 bits (79), Expect = 0.003
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 222 HRRIHTGEKPYVCE 235
+ EKPY CE
Sbjct: 3 SGSSGSVEKPYKCE 16
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 1e-12
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG + + C+ CGKSF R + HER H+GEKP
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 57.2 bits (139), Expect = 1e-11
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TGE+ Y C C +F KH R+H+GEKP
Sbjct: 7 GTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 47.9 bits (115), Expect = 3e-08
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEK Y C+ CG F S+ L H+R H +K
Sbjct: 3 SGSSGTGEKLYNCKECGKSF-------------------SRAPCLLKHER-LHSGEKPSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 40.6 bits (96), Expect = 1e-05
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T K ++C++C KSF L++HE+ HSG K +
Sbjct: 2 SSGSSGTGEK-LYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 40.6 bits (96), Expect = 1e-05
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 163 SHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
S + +K Y C C K+F R L H + H+GE+P
Sbjct: 2 SSGS-SGTGEKLYNCKECGKSFSRAPCLLKH-ERLHSGEKPSGP 43
Score = 38.7 bits (91), Expect = 7e-05
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S TG + Y CK C K+F H H+ K P
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEK-PSGP 43
Score = 33.7 bits (78), Expect = 0.004
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 222 HRRIHTGEKPYVCE 235
TGEK Y C+
Sbjct: 3 SGSSGTGEKLYNCK 16
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 1e-12
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +PF C C K+F K+ + H+RTHTGEKP
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 56.3 bits (137), Expect = 3e-11
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+P++C C F + H+R HTGEKP
Sbjct: 7 GTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 49.4 bits (119), Expect = 1e-08
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKP++C C F + +SNL H+R TH +K
Sbjct: 3 SGSSGTGEKPFECSECQKAF-------------------NTKSNLIVHQR-THTGEKPSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 42.1 bits (100), Expect = 4e-06
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T K PF C +C K+F T+ NL+ H++TH+G K +
Sbjct: 2 SSGSSGTGEK-PFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 39.0 bits (92), Expect = 5e-05
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 163 SHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
S + +K + C+ C KAF + L H + HTGE+P
Sbjct: 2 SSGS-SGTGEKPFECSECQKAFNTKSNLIVH-QRTHTGEKPSGP 43
Score = 37.8 bits (89), Expect = 1e-04
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCE 46
S TG +P+EC C+K F +K H THT K P
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEK-PSGPS 44
Score = 33.2 bits (77), Expect = 0.005
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 222 HRRIHTGEKPYVC 234
TGEKP+ C
Sbjct: 3 SGSSGTGEKPFEC 15
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 59.9 bits (146), Expect = 1e-12
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG +P+ C C K+F K+++ H+R+HTG KP
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 56.8 bits (138), Expect = 2e-11
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TG +PY C C TF H+R HTG KP
Sbjct: 7 GTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 47.9 bits (115), Expect = 3e-08
Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TG KPY C C F S +S L H+R +H K
Sbjct: 3 SGSSGTGVKPYGCSQCAKTF-------------------SLKSQLIVHQR-SHTGVKPSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 41.0 bits (97), Expect = 1e-05
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T K P+ C +C K+F + L+ H+++H+G K +
Sbjct: 2 SSGSSGTGVK-PYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 39.1 bits (92), Expect = 5e-05
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 163 SHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
S + K Y C+ C K F + L H + +HTG +P
Sbjct: 2 SSGS-SGTGVKPYGCSQCAKTFSLKSQLIVH-QRSHTGVKPSGP 43
Score = 39.1 bits (92), Expect = 5e-05
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S TG +PY C C KTF K H +HT K P
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVK-PSGP 43
Score = 34.0 bits (79), Expect = 0.003
Identities = 6/14 (42%), Positives = 6/14 (42%)
Query: 221 KHRRIHTGEKPYVC 234
TG KPY C
Sbjct: 2 SSGSSGTGVKPYGC 15
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 59.8 bits (146), Expect = 1e-12
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 88 VHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG +P+ C C K+F K+ + H+RTHTGE
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 56.3 bits (137), Expect = 3e-11
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TGE+PY+C+ C F + H+R HTGE
Sbjct: 7 GTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 49.0 bits (118), Expect = 1e-08
Identities = 18/90 (20%), Positives = 23/90 (25%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY+C C F + +SNL H+R
Sbjct: 3 SGSSGTGEKPYECNECQKAF-------------------NTKSNLMVHQR---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTGE
Sbjct: 34 --------------------THTGESGPSS 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S TG +PYEC C+K F +K H THT S
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGES-GPSS 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVC 73
+ + T K P+ C +C K+F T+ NL+ H++TH+G
Sbjct: 2 SSGSSGTGEK-PYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 33.2 bits (77), Expect = 0.005
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 222 HRRIHTGEKPYVC 234
TGEKPY C
Sbjct: 3 SGSSGTGEKPYEC 15
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 59.9 bits (146), Expect = 1e-12
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG +PF C CGKSF K + H+R HTGEK
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 56.8 bits (138), Expect = 2e-11
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TG++P++C C +F + H+RIHTGEK
Sbjct: 7 GTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 48.3 bits (116), Expect = 2e-08
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 20/62 (32%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TG+KP++C CG F + NL +H+R H +K P
Sbjct: 3 SGSSGTGQKPFECTHCGKSF-------------------RAKGNLVTHQR-IHTGEKSGP 42
Query: 177 CT 178
+
Sbjct: 43 SS 44
Score = 41.0 bits (97), Expect = 9e-06
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T +K PF C C KSF + NLV H++ H+G K +
Sbjct: 2 SSGSSGTGQK-PFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 39.4 bits (93), Expect = 4e-05
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S TG +P+EC C K+F +K H HT K
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEK-SGPS 43
Score = 32.9 bits (76), Expect = 0.008
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 222 HRRIHTGEKPYVC 234
TG+KP+ C
Sbjct: 3 SGSSGTGQKPFEC 15
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.9 bits (146), Expect = 1e-12
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 88 VHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG +P+ C CGKSF++K+++ H+R HTGE P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 57.6 bits (140), Expect = 1e-11
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TGE+PY+C C +FI H+RIHTGE P
Sbjct: 7 GTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 46.8 bits (112), Expect = 8e-08
Identities = 19/90 (21%), Positives = 24/90 (26%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY+C CG F ++S L H+R
Sbjct: 3 SGSSGTGEKPYECSDCGKSF-------------------IKKSQLHVHQR---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTGE P
Sbjct: 34 --------------------IHTGENPSGP 43
Score = 38.7 bits (91), Expect = 7e-05
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S TG +PYEC C K+F+ K H HT P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGEN-PSGP 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVC 73
+ + T K P+ C C KSF + L H++ H+G
Sbjct: 2 SSGSSGTGEK-PYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 34.1 bits (79), Expect = 0.003
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 221 KHRRIHTGEKPYVC 234
TGEKPY C
Sbjct: 2 SSGSSGTGEKPYEC 15
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 2e-12
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TGE+PY+C +C F H +H +H+GE+P
Sbjct: 7 GTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 57.9 bits (141), Expect = 9e-12
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG +P+ C+VCGK+F + + H H+GE+P
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 46.0 bits (110), Expect = 1e-07
Identities = 19/90 (21%), Positives = 24/90 (26%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY+C+ CG FR S+L H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFR-------------------VSSHLVQHHS---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
H+GERP
Sbjct: 34 --------------------VHSGERPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ T K P+ C+ C K+F +LVQH HSG + +
Sbjct: 3 SGSSGTGEK-PYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 36.0 bits (84), Expect = 6e-04
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTH 36
S TG +PY+C+ C K F +HLV H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAF----RVSSHLVQH 31
Score = 34.8 bits (81), Expect = 0.001
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 221 KHRRIHTGEKPYVCE 235
TGEKPY C+
Sbjct: 2 SSGSSGTGEKPYKCQ 16
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.9 bits (146), Expect = 2e-12
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
+G++PY+C C TFI H +H+R+HTGE+
Sbjct: 7 GSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 59.1 bits (144), Expect = 3e-12
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ +G +P+ C+ C K+F++ + H+R HTGE+
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 45.2 bits (108), Expect = 3e-07
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ +G+KPY+C+ C F Q +L HKR H ++
Sbjct: 3 SGSSGSGKKPYECKECRKTF-------------------IQIGHLNQHKR-VHTGERSSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 40.2 bits (95), Expect = 2e-05
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEK 47
S +G +PYECK C+KTF+ H HT +
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGER-SSGPSS 45
Score = 30.2 bits (69), Expect = 0.073
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 221 KHRRIHTGEKPYVC 234
+G+KPY C
Sbjct: 2 SSGSSGSGKKPYEC 15
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 59.8 bits (146), Expect = 2e-12
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +PF C CGKSF +++ H+R HTGEKP
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 58.7 bits (143), Expect = 4e-12
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+P++C C +F H+RIHTGEKP
Sbjct: 7 GTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 46.3 bits (111), Expect = 1e-07
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKP++C CG F S S L +H+R H +K
Sbjct: 3 SGSSGTGEKPFECAECGKSF-------------------SISSQLATHQR-IHTGEKPSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 38.3 bits (90), Expect = 1e-04
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCE 46
S TG +P+EC C K+F H HT K P
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEK-PSGPS 44
Score = 37.9 bits (89), Expect = 1e-04
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ T K PF C +C KSF L H++ H+G K +
Sbjct: 3 SGSSGTGEK-PFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.003
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 221 KHRRIHTGEKPYVC 234
TGEKP+ C
Sbjct: 2 SSGSSGTGEKPFEC 15
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 59.9 bits (146), Expect = 2e-12
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG RP+ C CGK+F K+ + H R+HTGEKP
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 57.2 bits (139), Expect = 1e-11
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TG+RPY+C C F HRR HTGEKP
Sbjct: 7 GTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 3e-08
Identities = 17/90 (18%), Positives = 26/90 (28%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TG++PY+C CG F +S+L H+R
Sbjct: 3 SGSSGTGQRPYECIECGKAF-------------------KTKSSLICHRR---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
+HTGE+P
Sbjct: 34 --------------------SHTGEKPSGP 43
Score = 41.8 bits (99), Expect = 6e-06
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTE 75
+ T ++ P+ C +C K+F T+ +L+ H ++H+G K +
Sbjct: 3 SGSSGTGQR-PYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS 45
Score = 39.4 bits (93), Expect = 3e-05
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S TG RPYEC C K F +K + H +HT K P
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEK-PSGP 43
Score = 34.1 bits (79), Expect = 0.003
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 221 KHRRIHTGEKPYVC 234
TG++PY C
Sbjct: 2 SSGSSGTGQRPYEC 15
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 2e-12
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +P+IC CGK+F ++ + H++ HT +KP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 57.5 bits (140), Expect = 1e-11
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+PY C C F + KH++IHT +KP
Sbjct: 7 GTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 47.1 bits (113), Expect = 7e-08
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY C CG F + RSNL H++ H K
Sbjct: 3 SGSSGTGEKPYICAECGKAF-------------------TIRSNLIKHQK-IHTKQKPSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 39.8 bits (94), Expect = 2e-05
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T K P+ C +C K+F + NL++H+K H+ K +
Sbjct: 2 SSGSSGTGEK-PYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 36.7 bits (86), Expect = 4e-04
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCE 46
S TG +PY C C K F + H HT +K P
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQK-PSGPS 44
Score = 34.8 bits (81), Expect = 0.002
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 222 HRRIHTGEKPYVC 234
TGEKPY+C
Sbjct: 3 SGSSGTGEKPYIC 15
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 2e-12
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ G +P+ C CGK+F K+ + H RTH+GEKP
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 56.4 bits (137), Expect = 3e-11
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
GE+PY C C F + H R H+GEKP
Sbjct: 7 GAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 48.7 bits (117), Expect = 2e-08
Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ GEKPY C CG F S +S L H R TH +K
Sbjct: 3 SGSSGAGEKPYGCSECGKAF-------------------SSKSYLIIHMR-THSGEKPSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 40.6 bits (96), Expect = 1e-05
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + K P+ C +C K+F ++ L+ H +THSG K +
Sbjct: 2 SSGSSGAGEK-PYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 163 SHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
S + +K Y C+ C KAF + L H++ H+GE+P
Sbjct: 2 SSGS-SGAGEKPYGCSECGKAFSSKSYLIIHMR-THSGEKPSGP 43
Score = 39.1 bits (92), Expect = 4e-05
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCE 46
S G +PY C C K F SK H+ TH+ K P
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEK-PSGPS 44
Score = 32.9 bits (76), Expect = 0.006
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 222 HRRIHTGEKPYVC 234
GEKPY C
Sbjct: 3 SGSSGAGEKPYGC 15
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 2e-12
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG +P C CGK+F K+++ H+RTH +K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 57.2 bits (139), Expect = 2e-11
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TGE+P +C C F + H+R H +K
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 46.8 bits (112), Expect = 7e-08
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKP +C CG F +S L H+R TH +DK
Sbjct: 3 SGSSGTGEKPCKCTECGKAF-------------------CWKSQLIMHQR-THVDDKHSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 42.5 bits (101), Expect = 3e-06
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T K P C +C K+F + L+ H++TH K +
Sbjct: 2 SSGSSGTGEK-PCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 39.5 bits (93), Expect = 3e-05
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 163 SHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
S + +K CT C KAF + L H + H ++
Sbjct: 2 SSGS-SGTGEKPCKCTECGKAFCWKSQLIMH-QRTHVDDKHSGP 43
Score = 39.5 bits (93), Expect = 3e-05
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S TG +P +C C K F K H TH D K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDK-HSGP 43
Score = 30.2 bits (69), Expect = 0.064
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 222 HRRIHTGEKPYVC 234
TGEKP C
Sbjct: 3 SGSSGTGEKPCKC 15
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 2e-12
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+PY+C+ C F H +HRR+HTG KP
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 57.5 bits (140), Expect = 1e-11
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +P+ C CGK F + + + H R HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 45.6 bits (109), Expect = 2e-07
Identities = 19/90 (21%), Positives = 25/90 (27%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY+C CG F +Q S+L H+R
Sbjct: 3 SGSSGTGEKPYKCNECGKVF-------------------TQNSHLARHRR---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTG +P
Sbjct: 34 --------------------VHTGGKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T K P+ C +C K F +L +H + H+G K +
Sbjct: 2 SSGSSGTGEK-PYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 36.7 bits (86), Expect = 3e-04
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCE 46
S TG +PY+C C K F H HT K P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGK-PSGPS 44
Score = 34.4 bits (80), Expect = 0.002
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 221 KHRRIHTGEKPYVC 234
TGEKPY C
Sbjct: 2 SSGSSGTGEKPYKC 15
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 59.4 bits (145), Expect = 2e-12
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG P+ C CGK F RK ++ H++TH+G+
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 54.4 bits (132), Expect = 1e-10
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TGE PY+C C F + H++ H+G+
Sbjct: 7 GTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 42.9 bits (102), Expect = 2e-06
Identities = 15/90 (16%), Positives = 23/90 (25%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGE PY+C CG F S++ L SH++
Sbjct: 3 SGSSGTGENPYECCECGKVF-------------------SRKDQLVSHQK---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
H+G+
Sbjct: 34 --------------------THSGQSGPSS 43
Score = 41.7 bits (99), Expect = 6e-06
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S TG PYEC C K F K +H TH+ + S
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQS-GPSS 43
Score = 38.2 bits (90), Expect = 8e-05
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVC 73
+ + T P+ C +C K F + LV H+KTHSG
Sbjct: 2 SSGSSGTGEN-PYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 30.2 bits (69), Expect = 0.060
Identities = 6/14 (42%), Positives = 6/14 (42%)
Query: 221 KHRRIHTGEKPYVC 234
TGE PY C
Sbjct: 2 SSGSSGTGENPYEC 15
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 2e-12
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG + F C CGK+F RK+ + H++ HTGEKP
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 56.8 bits (138), Expect = 2e-11
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TG + ++C C F H++IHTGEKP
Sbjct: 7 GTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 4e-07
Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TG K ++C CG F +++S L H++
Sbjct: 3 SGSSGTGGKHFECTECGKAF-------------------TRKSTLSMHQK---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTGE+P
Sbjct: 34 --------------------IHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 1e-05
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEK 47
S TG + +EC C K F K T H HT K P
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEK-PSGPSS 45
Score = 39.0 bits (92), Expect = 4e-05
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T K F C +C K+F + L H+K H+G K +
Sbjct: 2 SSGSSGTGGK-HFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.006
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 222 HRRIHTGEKPYVC 234
TG K + C
Sbjct: 3 SGSSGTGGKHFEC 15
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 59.5 bits (145), Expect = 2e-12
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+PY C C +F + KH+R+H+GEKP
Sbjct: 7 GTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 57.6 bits (140), Expect = 1e-11
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +P+ C+ CGKSF + + H+R H+GEKP
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 46.4 bits (111), Expect = 1e-07
Identities = 18/90 (20%), Positives = 23/90 (25%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY C+ CG F S L H+R
Sbjct: 3 SGSSGTGEKPYNCKECGKSF-------------------RWASCLLKHQR---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
H+GE+P
Sbjct: 34 --------------------VHSGEKPSGP 43
Score = 45.6 bits (109), Expect = 2e-07
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 61 HEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFIC 101
+ +G K + C ECGK+F L H VH+G +P
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTE 75
+ + T K P++C++C KSF L++H++ HSG K +
Sbjct: 2 SSGSSGTGEK-PYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 34.1 bits (79), Expect = 0.003
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 222 HRRIHTGEKPYVCE 235
TGEKPY C+
Sbjct: 3 SGSSGTGEKPYNCK 16
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 59.5 bits (145), Expect = 2e-12
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ G + + CR C F + + ++ H+ H GEKP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 56.8 bits (138), Expect = 2e-11
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
GE+ ++C C+ F + H+ +H GEKP
Sbjct: 7 GMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 47.2 bits (113), Expect = 5e-08
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 61 HEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFIC 101
+ G K + C EC F +L +H VH G +P
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 46.0 bits (110), Expect = 1e-07
Identities = 15/90 (16%), Positives = 22/90 (24%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ GEK ++C C F SQ S+L+ H+
Sbjct: 3 SGSSGMGEKTWKCRECDMCF-------------------SQASSLRLHQN---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
H GE+P
Sbjct: 34 --------------------VHVGEKPSGP 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + K + C +CD F +L H+ H G K +
Sbjct: 2 SSGSSGMGEK-TWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 37.9 bits (89), Expect = 1e-04
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEK 47
S G + ++C+ C F + + H H K P
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEK-PSGPSS 45
Score = 29.4 bits (67), Expect = 0.11
Identities = 4/14 (28%), Positives = 5/14 (35%)
Query: 222 HRRIHTGEKPYVCE 235
GEK + C
Sbjct: 3 SGSSGMGEKTWKCR 16
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 2e-12
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +P+ C CGK+F ++ + H++ HTGEKP
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 57.5 bits (140), Expect = 1e-11
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+PY+C C F + H++IHTGEKP
Sbjct: 7 GTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 2e-08
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 20/64 (31%)
Query: 116 DHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRY 175
+ TGEKPY+C CG F + RSNL +H++ H +K
Sbjct: 2 SSGSSGTGEKPYRCAECGKAF-------------------TDRSNLFTHQK-IHTGEKPS 41
Query: 176 PCTS 179
+S
Sbjct: 42 GPSS 45
Score = 39.0 bits (92), Expect = 5e-05
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVC 73
+ + T K P+ C +C K+F + NL H+K H+G K
Sbjct: 2 SSGSSGTGEK-PYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 2e-04
Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 3 DHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCE 46
S TG +PY C C K F + H HT K P
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEK-PSGPS 44
Score = 34.0 bits (79), Expect = 0.003
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 222 HRRIHTGEKPYVCE 235
TGEKPY C
Sbjct: 3 SGSSGTGEKPYRCA 16
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 2e-12
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGERP++C+ C +FI H +H+RIHTGEKP
Sbjct: 7 GTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 58.7 bits (143), Expect = 4e-12
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG RP C CGKSF++ A + H+R HTGEKP
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 3e-07
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGE+P++C CG F Q ++L H+R
Sbjct: 3 SGSSGTGERPHKCNECGKSF-------------------IQSAHLIQHQR---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTGE+P
Sbjct: 34 --------------------IHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 8e-05
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ T + P C +C KSF +L+QH++ H+G K +
Sbjct: 3 SGSSGTGER-PHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 37.9 bits (89), Expect = 1e-04
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 9/48 (18%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLV----THTDRKRPFSCEK 47
S TG RP++C C K+F AHL+ HT K P
Sbjct: 3 SGSSGTGERPHKCNECGKSF----IQSAHLIQHQRIHTGEK-PSGPSS 45
Score = 33.2 bits (77), Expect = 0.005
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 222 HRRIHTGEKPYVC 234
TGE+P+ C
Sbjct: 3 SGSSGTGERPHKC 15
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 3e-12
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ +G +P+ C CGK + R+ ++ H+R HTGEK
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 56.8 bits (138), Expect = 2e-11
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
+GE+PY+C C + H+R+HTGEK
Sbjct: 7 GSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 48.3 bits (116), Expect = 2e-08
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 20/64 (31%)
Query: 116 DHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRY 175
+ +GEKPY+C CG + +R +L H+R H +K
Sbjct: 2 SSGSSGSGEKPYKCVECGKGY-------------------KRRLDLDFHQR-VHTGEKLS 41
Query: 176 PCTS 179
+S
Sbjct: 42 GPSS 45
Score = 42.1 bits (100), Expect = 4e-06
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 163 SHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCD 207
S + +K Y C C K +KRR LD+H + HTGE+
Sbjct: 2 SSGS-SGSGEKPYKCVECGKGYKRRLDLDFH-QRVHTGEKLSGPS 44
Score = 38.7 bits (91), Expect = 6e-05
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + + K P+ C +C K + + +L H++ H+G K +
Sbjct: 2 SSGSSGSGEK-PYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 38.3 bits (90), Expect = 8e-05
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 3 DHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEK 47
S +G +PY+C C K + + H HT K
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEK-LSGPSS 45
Score = 34.0 bits (79), Expect = 0.003
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 221 KHRRIHTGEKPYVCE 235
+GEKPY C
Sbjct: 2 SSGSSGSGEKPYKCV 16
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 3e-12
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 88 VHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG +P+ C +CGKSF +K+++ H++ HTGEKP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 57.2 bits (139), Expect = 1e-11
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TGE+PY+C IC +F H++IHTGEKP
Sbjct: 7 GTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 6e-08
Identities = 18/90 (20%), Positives = 26/90 (28%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY+C CG F +++S L H++
Sbjct: 3 SGSSGTGEKPYECSICGKSF-------------------TKKSQLHVHQQ---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTGE+P
Sbjct: 34 --------------------IHTGEKPSGP 43
Score = 39.1 bits (92), Expect = 5e-05
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S TG +PYEC C K+F K H HT K P
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEK-PSGP 43
Score = 37.1 bits (87), Expect = 2e-04
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ T K P+ C C KSF + L H++ H+G K +
Sbjct: 3 SGSSGTGEK-PYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 34.1 bits (79), Expect = 0.003
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 221 KHRRIHTGEKPYVC 234
TGEKPY C
Sbjct: 2 SSGSSGTGEKPYEC 15
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 3e-12
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ +G +PF C CGK F + +++ H+R HTGEKP
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 58.3 bits (142), Expect = 6e-12
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
+GE+P++C+ C F H+R+HTGEKP
Sbjct: 7 GSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 5e-08
Identities = 20/91 (21%), Positives = 28/91 (30%), Gaps = 49/91 (53%)
Query: 116 DHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRY 175
+ +GEKP++CE CG +F +Q S L SH+R
Sbjct: 2 SSGSSGSGEKPFKCEECGKRF-------------------TQNSQLHSHQR--------- 33
Query: 176 PCTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTGE+P
Sbjct: 34 ---------------------VHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 8e-05
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + K PF CE+C K F L H++ H+G K +
Sbjct: 3 SGSSGSGEK-PFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 37.9 bits (89), Expect = 1e-04
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 3 DHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEK 47
S +G +P++C+ C K F +H HT K P
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEK-PSGPSS 45
Score = 32.9 bits (76), Expect = 0.006
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 222 HRRIHTGEKPYVCE 235
+GEKP+ CE
Sbjct: 3 SGSSGSGEKPFKCE 16
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 3e-12
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+PY+C+ C F H H+RIHTG KP
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 58.3 bits (142), Expect = 5e-12
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +P+ C CGK F + + + +H+R HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 46.4 bits (111), Expect = 1e-07
Identities = 19/90 (21%), Positives = 26/90 (28%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY+C CG F +Q S+L +H+R
Sbjct: 3 SGSSGTGEKPYKCNECGKVF-------------------TQNSHLANHQR---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTG +P
Sbjct: 34 --------------------IHTGVKPSGP 43
Score = 38.3 bits (90), Expect = 8e-05
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T K P+ C +C K F +L H++ H+G K +
Sbjct: 2 SSGSSGTGEK-PYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 36.7 bits (86), Expect = 3e-04
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCE 46
S TG +PY+C C K F H HT K P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVK-PSGPS 44
Score = 34.4 bits (80), Expect = 0.002
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 221 KHRRIHTGEKPYVC 234
TGEKPY C
Sbjct: 2 SSGSSGTGEKPYKC 15
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 3e-12
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TG++PY+C+ C F H +HR IHTGEKP
Sbjct: 7 GTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 58.3 bits (142), Expect = 6e-12
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 88 VHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +P+ C CGK F + + + H HTGEKP
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 1e-07
Identities = 18/90 (20%), Positives = 25/90 (27%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TG+KPY+C CG F +Q S+L H+
Sbjct: 3 SGSSGTGKKPYKCNECGKVF-------------------TQNSHLARHRG---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTGE+P
Sbjct: 34 --------------------IHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 1e-04
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T +K P+ C +C K F +L +H H+G K +
Sbjct: 2 SSGSSGTGKK-PYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 4e-04
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCE 46
S TG +PY+C C K F H HT K P
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEK-PSGPS 44
Score = 33.6 bits (78), Expect = 0.004
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 222 HRRIHTGEKPYVCE 235
TG+KPY C
Sbjct: 3 SGSSGTGKKPYKCN 16
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 3e-12
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+PY+CD+C F + +H+R+H+GEKP
Sbjct: 7 GTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 59.1 bits (144), Expect = 3e-12
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 88 VHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +P+ C VC K+F A + H+R H+GEKP
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 47.5 bits (114), Expect = 5e-08
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY+C+ C F S ++L H+R
Sbjct: 3 SGSSGTGEKPYECDVCRKAF-------------------SHHASLTQHQR---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
H+GE+P
Sbjct: 34 --------------------VHSGEKPSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEK 47
S TG +PYEC C+K F + H H+ K P
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEK-PSGPSS 45
Score = 37.9 bits (89), Expect = 1e-04
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ T K P+ C+ C K+F +L QH++ HSG K +
Sbjct: 3 SGSSGTGEK-PYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.004
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 222 HRRIHTGEKPYVCE 235
TGEKPY C+
Sbjct: 3 SGSSGTGEKPYECD 16
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 3e-12
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG +P+ C CGK+F +KA + H+R HTGEKP
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 9e-12
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TGE+PY+C C F + +H+RIHTGEKP
Sbjct: 7 GTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 4e-08
Identities = 20/90 (22%), Positives = 27/90 (30%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY+C CG F +Q++NL H+R
Sbjct: 3 SGSSGTGEKPYRCGECGKAF-------------------AQKANLTQHQR---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTGE+P
Sbjct: 34 --------------------IHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 3e-05
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T K P+ C +C K+F + NL QH++ H+G K +
Sbjct: 2 SSGSSGTGEK-PYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 4e-04
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S TG +PY C C K F K H HT K P
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEK-PSGP 43
Score = 33.6 bits (78), Expect = 0.004
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 222 HRRIHTGEKPYVC 234
TGEKPY C
Sbjct: 3 SGSSGTGEKPYRC 15
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 3e-12
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TGE+PY+CD+C+ +F Y H+RIHTGEKP
Sbjct: 7 GTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 58.3 bits (142), Expect = 6e-12
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG +P+ C VC KSF + + H+R HTGEKP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 6e-08
Identities = 18/90 (20%), Positives = 24/90 (26%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY+C+ C F S+L H+R
Sbjct: 3 SGSSGTGEKPYKCDVCHKSF-------------------RYGSSLTVHQR---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTGE+P
Sbjct: 34 --------------------IHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 1e-05
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTE 75
+ + T K P+ C+ C KSF +L H++ H+G K +
Sbjct: 2 SSGSSGTGEK-PYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSS 45
Score = 37.5 bits (88), Expect = 2e-04
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S TG +PY+C C K+F + H HT K P
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEK-PSGP 43
Score = 34.4 bits (80), Expect = 0.002
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 222 HRRIHTGEKPYVCE 235
TGEKPY C+
Sbjct: 3 SGSSGTGEKPYKCD 16
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 59.1 bits (144), Expect = 3e-12
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ G P+ C C KSF K + H+R HT EKP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 57.5 bits (140), Expect = 1e-11
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
G PY+C C +F H+R+HT EKP
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 47.5 bits (114), Expect = 4e-08
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 61 HEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFIC 101
+ +G + C++C K+F L VH +HT +P
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 44.5 bits (106), Expect = 5e-07
Identities = 14/90 (15%), Positives = 19/90 (21%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ G PY+C C F S + L H+R
Sbjct: 3 SGSSGAGVNPYKCSQCEKSF-------------------SGKLRLLVHQR---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HT E+P
Sbjct: 34 --------------------MHTREKPSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + P+ C +C+KSF + L+ H++ H+ K +
Sbjct: 2 SSGSSGAGVN-PYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEK 47
S G PY+C C+K+F K H HT K P
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREK-PSGPSS 45
Score = 29.4 bits (67), Expect = 0.12
Identities = 4/13 (30%), Positives = 4/13 (30%)
Query: 222 HRRIHTGEKPYVC 234
G PY C
Sbjct: 3 SGSSGAGVNPYKC 15
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 59.1 bits (144), Expect = 3e-12
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +P+ C CGK F+ + ++ H HTGEKP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 57.9 bits (141), Expect = 7e-12
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+PY+C+ C FI H +HTGEKP
Sbjct: 7 GTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 2e-08
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 20/64 (31%)
Query: 116 DHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRY 175
+ TGEKPY+CE CG F R +L +H H +K
Sbjct: 2 SSGSSGTGEKPYKCEECGKGF-------------------ICRRDLYTHHM-VHTGEKPS 41
Query: 176 PCTS 179
+S
Sbjct: 42 GPSS 45
Score = 41.0 bits (97), Expect = 1e-05
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 163 SHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
S + +K Y C C K F RR L H HTGE+P
Sbjct: 2 SSGS-SGTGEKPYKCEECGKGFICRRDLYTH-HMVHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 6e-05
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T K P+ CE+C K F +++L H H+G K +
Sbjct: 2 SSGSSGTGEK-PYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 38.3 bits (90), Expect = 8e-05
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 3 DHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCE 46
S TG +PY+C+ C K F+ + H + HT K P
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEK-PSGPS 44
Score = 34.1 bits (79), Expect = 0.003
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 222 HRRIHTGEKPYVCE 235
TGEKPY CE
Sbjct: 3 SGSSGTGEKPYKCE 16
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 59.1 bits (144), Expect = 3e-12
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG +PF C CGK F R++ + H + HTGEKP
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 56.0 bits (136), Expect = 4e-11
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TGE+P++C C F H ++HTGEKP
Sbjct: 7 GTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 2e-08
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 20/64 (31%)
Query: 116 DHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRY 175
+ TGEKP++C CG F S+RS L H + H +K
Sbjct: 2 SSGSSGTGEKPFKCVECGKGF-------------------SRRSALNVHHK-LHTGEKPS 41
Query: 176 PCTS 179
+S
Sbjct: 42 GPSS 45
Score = 48.3 bits (116), Expect = 2e-08
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 60 QHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFIC 101
+ +G K F C ECGK F L VH +HTG +P
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 9e-06
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 163 SHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
S + +K + C C K F RR L+ H HTGE+P
Sbjct: 2 SSGS-SGTGEKPFKCVECGKGFSRRSALNVH-HKLHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T K PF C +C K F + L H K H+G K +
Sbjct: 2 SSGSSGTGEK-PFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 37.1 bits (87), Expect = 2e-04
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 3 DHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S TG +P++C C K F + H HT K P
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEK-PSGP 43
Score = 34.0 bits (79), Expect = 0.003
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 221 KHRRIHTGEKPYVC 234
TGEKP+ C
Sbjct: 2 SSGSSGTGEKPFKC 15
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 3e-12
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TG +PYQC+ C F +H+R+HTGEKP
Sbjct: 7 GTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 57.5 bits (140), Expect = 1e-11
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +P+ C CGK+F + +++ H+R HTGEKP
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 46.8 bits (112), Expect = 8e-08
Identities = 21/90 (23%), Positives = 24/90 (26%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TG KPYQC CG F SQ S L H+R
Sbjct: 3 SGSSGTGGKPYQCNECGKAF-------------------SQTSKLARHQR---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTGE+P
Sbjct: 34 --------------------VHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCE 46
S TG +PY+C C K F H HT K P
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEK-PSGPS 44
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T K P+ C +C K+F L +H++ H+G K +
Sbjct: 2 SSGSSGTGGK-PYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.002
Identities = 6/14 (42%), Positives = 6/14 (42%)
Query: 221 KHRRIHTGEKPYVC 234
TG KPY C
Sbjct: 2 SSGSSGTGGKPYQC 15
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 3e-12
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ +G +PF C CGK F + + + H+R HTGEKP
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 58.3 bits (142), Expect = 5e-12
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
+GE+P+QC+ C F H H+R+HTGEKP
Sbjct: 7 GSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 3e-08
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 20/64 (31%)
Query: 116 DHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRY 175
+ +GEKP+QCE CG +F +Q S+L SH+R H +K
Sbjct: 2 SSGSSGSGEKPFQCEECGKRF-------------------TQNSHLHSHQR-VHTGEKPS 41
Query: 176 PCTS 179
+S
Sbjct: 42 GPSS 45
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + K PF CE+C K F +L H++ H+G K +
Sbjct: 3 SGSSGSGEK-PFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 37.1 bits (87), Expect = 2e-04
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 3 DHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S +G +P++C+ C K F +H HT K P
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEK-PSGP 43
Score = 33.3 bits (77), Expect = 0.005
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 221 KHRRIHTGEKPYVCE 235
+GEKP+ CE
Sbjct: 2 SSGSSGSGEKPFQCE 16
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.0 bits (144), Expect = 3e-12
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+PY+C+ C F H +HR IHTGEKP
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 57.5 bits (140), Expect = 1e-11
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +P+ C CGK F + + + H HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 46.3 bits (111), Expect = 1e-07
Identities = 19/90 (21%), Positives = 25/90 (27%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY+C CG F +Q S+L H+
Sbjct: 3 SGSSGTGEKPYKCNECGKVF-------------------TQNSHLVRHRG---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTGE+P
Sbjct: 34 --------------------IHTGEKPSGP 43
Score = 37.8 bits (89), Expect = 1e-04
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T K P+ C +C K F +LV+H H+G K +
Sbjct: 2 SSGSSGTGEK-PYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 4e-04
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTH 36
S TG +PY+C C K F T +HLV H
Sbjct: 3 SGSSGTGEKPYKCNECGKVF----TQNSHLVRH 31
Score = 33.6 bits (78), Expect = 0.004
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 222 HRRIHTGEKPYVCE 235
TGEKPY C
Sbjct: 3 SGSSGTGEKPYKCN 16
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 3e-12
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+PY C+ C FI+ ++H+RIHTGEKP
Sbjct: 7 GTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 58.7 bits (143), Expect = 4e-12
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +P+ C CGK+F+ +++++H+R HTGEKP
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 7e-08
Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY CE CG F S LQ H+R H +K
Sbjct: 3 SGSSGTGEKPYNCEECGKAF-------------------IHDSQLQEHQR-IHTGEKPSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 37.9 bits (89), Expect = 1e-04
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T K P++CE+C K+F L +H++ H+G K +
Sbjct: 2 SSGSSGTGEK-PYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 37.1 bits (87), Expect = 2e-04
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCE 46
S TG +PY C+ C K F+ + H HT K P
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEK-PSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 221 KHRRIHTGEKPYVCE 235
TGEKPY CE
Sbjct: 2 SSGSSGTGEKPYNCE 16
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 3e-12
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG +PF C+ CG +F + H R+H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 58.8 bits (143), Expect = 4e-12
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TGE+P+QC C F + KH R H P
Sbjct: 7 GTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 49.9 bits (120), Expect = 7e-09
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 60 QHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFIC 101
+ +G K F C ECG F +L HL H P
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 48.4 bits (116), Expect = 2e-08
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKP+QC+ CG F S +L H R +H
Sbjct: 3 SGSSGTGEKPFQCKECGMNF-------------------SWSCSLFKHLR-SHERTDPSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 44.5 bits (106), Expect = 5e-07
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S TG +P++CK C F + HL +H R P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHE-RTDPSGP 43
Score = 38.7 bits (91), Expect = 7e-05
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVC 73
+ + T K PF C++C +F +L +H ++H +
Sbjct: 2 SSGSSGTGEK-PFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 37.2 bits (87), Expect = 2e-04
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 163 SHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCD 207
S + +K + C C F L H++ +H P
Sbjct: 2 SSGS-SGTGEKPFQCKECGMNFSWSCSLFKHLR-SHERTDPSGPS 44
Score = 31.4 bits (72), Expect = 0.024
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 222 HRRIHTGEKPYVCE 235
TGEKP+ C+
Sbjct: 3 SGSSGTGEKPFQCK 16
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 59.0 bits (144), Expect = 3e-12
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG +P++C CGK+F K+ + H RTHTGE
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 56.0 bits (136), Expect = 3e-11
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TG +PY C+ C F + H R HTGE
Sbjct: 7 GTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 47.5 bits (114), Expect = 4e-08
Identities = 17/90 (18%), Positives = 19/90 (21%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TG KPY C CG F +S L H R
Sbjct: 3 SGSSGTGMKPYVCNECGKAF-------------------RSKSYLIIHTR---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTGE
Sbjct: 34 --------------------THTGESGPSS 43
Score = 39.4 bits (93), Expect = 4e-05
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S TG +PY C C K F SK H THT S
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGES-GPSS 43
Score = 39.0 bits (92), Expect = 4e-05
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVC 73
+ + T K P+ C +C K+F ++ L+ H +TH+G
Sbjct: 2 SSGSSGTGMK-PYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 221 KHRRIHTGEKPYVC 234
TG KPYVC
Sbjct: 2 SSGSSGTGMKPYVC 15
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 3e-12
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG R + C CGK+F++K+ + H+R H GEKP
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 57.5 bits (140), Expect = 1e-11
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TGER Y+C C FI H+RIH GEKP
Sbjct: 7 GTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 49.1 bits (118), Expect = 1e-08
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 60 QHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFIC 101
+ +G + + C+ECGKAF L +H +H G +P
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 46.4 bits (111), Expect = 1e-07
Identities = 17/90 (18%), Positives = 23/90 (25%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGE+ Y+C CG F Q+S L H+R
Sbjct: 3 SGSSGTGERHYECSECGKAF-------------------IQKSTLSMHQR---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
H GE+P
Sbjct: 34 --------------------IHRGEKPSGP 43
Score = 41.0 bits (97), Expect = 9e-06
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEK 47
S TG R YEC C K F+ K T H H K P
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEK-PSGPSS 45
Score = 38.7 bits (91), Expect = 7e-05
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ T + + C +C K+F + L H++ H G K +
Sbjct: 3 SGSSGTGER-HYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.003
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 221 KHRRIHTGEKPYVC 234
TGE+ Y C
Sbjct: 2 SSGSSGTGERHYEC 15
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 4e-12
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG +P+ C CGK + K + H++ HTGE+P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 56.8 bits (138), Expect = 2e-11
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TGE+PY+C+ C + + H+++HTGE+P
Sbjct: 7 GTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 49.1 bits (118), Expect = 1e-08
Identities = 19/90 (21%), Positives = 26/90 (28%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY+CE CG + + + NL H++
Sbjct: 3 SGSSGTGEKPYKCEKCGKGY-------------------NSKFNLDMHQK---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTGERP
Sbjct: 34 --------------------VHTGERPSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T K P+ CEKC K + ++ NL H+K H+G + +
Sbjct: 2 SSGSSGTGEK-PYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 39.4 bits (93), Expect = 3e-05
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEK 47
S TG +PY+C+ C K + SK+ H HT + P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGER-PSGPSS 45
Score = 35.2 bits (82), Expect = 0.001
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 221 KHRRIHTGEKPYVCE 235
TGEKPY CE
Sbjct: 2 SSGSSGTGEKPYKCE 16
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 4e-12
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ +G +P++C CGK+F AE+ H+R HTGEKP
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 58.7 bits (143), Expect = 4e-12
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
+GE+PY CD C F +H+RIHTGEKP
Sbjct: 7 GSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 7e-08
Identities = 17/90 (18%), Positives = 24/90 (26%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ +GEKPY C++CG F + L H+R
Sbjct: 3 SGSSGSGEKPYVCDYCGKAF-------------------GLSAELVRHQR---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTGE+P
Sbjct: 34 --------------------IHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + K P+ C+ C K+F LV+H++ H+G K +
Sbjct: 3 SGSSGSGEK-PYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 8e-04
Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S +G +PY C C K F H HT K P
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEK-PSGP 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 221 KHRRIHTGEKPYVCE 235
+GEKPYVC+
Sbjct: 2 SSGSSGSGEKPYVCD 16
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 58.7 bits (143), Expect = 4e-12
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 93 HTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+G P+ C CGK+F RK ++ H+RTH GE
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 56.4 bits (137), Expect = 2e-11
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
+GE PY+C C F + H+R H GE
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 43.3 bits (103), Expect = 2e-06
Identities = 15/89 (16%), Positives = 21/89 (23%), Gaps = 49/89 (55%)
Query: 118 ERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPC 177
+GE PY+C CG F +++ L SH+R
Sbjct: 2 SSGSSGENPYECSECGKAF-------------------NRKDQLISHQR----------- 31
Query: 178 TSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
H GE
Sbjct: 32 -------------------THAGESGPSS 41
Score = 38.6 bits (91), Expect = 5e-05
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 35 THTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVC 73
+ P+ C +C K+F + L+ H++TH+G
Sbjct: 4 GSSGEN-PYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 38.6 bits (91), Expect = 6e-05
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 7 SHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
+G PYEC C K F K +H TH S
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGES-GPSS 41
Score = 29.0 bits (66), Expect = 0.18
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 223 RRIHTGEKPYVC 234
+GE PY C
Sbjct: 2 SSGSSGENPYEC 13
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 4e-12
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+PY+C+ C F H +HR IHTGEKP
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 57.5 bits (140), Expect = 1e-11
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +P+ C CGK F + + + H HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 2e-07
Identities = 19/90 (21%), Positives = 25/90 (27%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY+C CG F +Q S+L H+
Sbjct: 3 SGSSGTGEKPYKCNECGKVF-------------------TQNSHLARHRG---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTGE+P
Sbjct: 34 --------------------IHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T K P+ C +C K F +L +H H+G K +
Sbjct: 2 SSGSSGTGEK-PYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 36.7 bits (86), Expect = 3e-04
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCE 46
S TG +PY+C C K F H HT K P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEK-PSGPS 44
Score = 34.8 bits (81), Expect = 0.002
Identities = 7/15 (46%), Positives = 7/15 (46%)
Query: 221 KHRRIHTGEKPYVCE 235
TGEKPY C
Sbjct: 2 SSGSSGTGEKPYKCN 16
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 4e-12
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+PY+C +C+ F H +H++ HTGEKP
Sbjct: 7 GTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 58.7 bits (143), Expect = 4e-12
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +P+ C+VC K+F +KA + H++THTGEKP
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 5e-08
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 20/62 (32%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY+C+ C F +Q+++L H++ TH +K
Sbjct: 3 SGSSGTGEKPYECKVCSKAF-------------------TQKAHLAQHQK-THTGEKPSG 42
Query: 177 CT 178
+
Sbjct: 43 PS 44
Score = 41.7 bits (99), Expect = 5e-06
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTE 75
+ + T K P+ C+ C K+F + +L QH+KTH+G K +
Sbjct: 2 SSGSSGTGEK-PYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS 45
Score = 33.7 bits (78), Expect = 0.003
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 221 KHRRIHTGEKPYVC 234
TGEKPY C
Sbjct: 2 SSGSSGTGEKPYEC 15
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 4e-12
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +PF C CGK+F + H R HTGEKP
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 57.1 bits (139), Expect = 2e-11
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+P+ C C F +HRRIHTGEKP
Sbjct: 7 GTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 2e-08
Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKP+ C CG F S L H+R H +K
Sbjct: 3 SGSSGTGEKPFDCIDCGKAF-------------------SDHIGLNQHRR-IHTGEKPSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 42.1 bits (100), Expect = 4e-06
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 163 SHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
S + +K + C C KAF L+ H + HTGE+P
Sbjct: 2 SSGS-SGTGEKPFDCIDCGKAFSDHIGLNQH-RRIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 5e-05
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T K PF C C K+F L QH + H+G K +
Sbjct: 2 SSGSSGTGEK-PFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCE 46
S TG +P++C C K F H HT K P
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEK-PSGPS 44
Score = 33.6 bits (78), Expect = 0.003
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 221 KHRRIHTGEKPYVC 234
TGEKP+ C
Sbjct: 2 SSGSSGTGEKPFDC 15
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 59.6 bits (145), Expect = 4e-12
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 83 LRNLEVHLAVHTGNRPFICRV--CGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQF 136
+ NL + V RP+ C V C + F R E+ H R HTG+KP+QC C F
Sbjct: 6 MNNLLNY--VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Score = 57.3 bits (139), Expect = 3e-11
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 57 NLVQHEKTHSGSKDFVCT--ECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEV 114
NL+ + + + C C + F L H+ +HTG +PF CR+C ++F R +
Sbjct: 8 NLLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL 65
Query: 115 KDHERTHT 122
H RTHT
Sbjct: 66 TTHIRTHT 73
Score = 55.8 bits (135), Expect = 9e-11
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 156 SQRSNLQSHKRATHFNDKRYPCT--SCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATF 213
+NL ++ + Y C SC + F R L HI+ HTG++P+QC IC F
Sbjct: 4 HPMNNLLNYVV-PK--MRPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNF 59
Query: 214 IYPEHFKKHRRIHT 227
+H H R HT
Sbjct: 60 SRSDHLTTHIRTHT 73
Score = 51.5 bits (124), Expect = 3e-09
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 30 KAHLVTHTDRKRPFSC--EKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLE 87
++V RP++C E CD+ F L +H + H+G K F C C + F +L
Sbjct: 10 LNYVVPKM---RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
Query: 88 VHLAVHT 94
H+ HT
Sbjct: 67 THIRTHT 73
Score = 50.0 bits (120), Expect = 1e-08
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 198 HTGERPYQCDI--CNATFIYPEHFKKHRRIHTGEKPYVCEV 236
RPY C + C+ F + +H RIHTG+KP+ C +
Sbjct: 14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI 54
Score = 45.4 bits (108), Expect = 5e-07
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 4 HLVSH--TGARPYEC--KTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLV 59
+L+++ RPY C ++C + F H+ HT +K PF C C ++F +L
Sbjct: 8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQK-PFQCRICMRNFSRSDHLT 66
Query: 60 QHEKTHS 66
H +TH+
Sbjct: 67 THIRTHT 73
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 4e-12
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
+GE+PY+C+ C F H H RIHTGEKP
Sbjct: 7 GSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 57.1 bits (139), Expect = 2e-11
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ +G +P+ C CGK F + + + +H R HTGEKP
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 6e-08
Identities = 19/90 (21%), Positives = 26/90 (28%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ +GEKPY+C CG F +Q S+L +H R
Sbjct: 3 SGSSGSGEKPYKCNECGKVF-------------------TQNSHLTNHWR---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTGE+P
Sbjct: 34 --------------------IHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTE 75
+ + + K P+ C +C K F +L H + H+G K +
Sbjct: 2 SSGSSGSGEK-PYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSS 45
Score = 34.0 bits (79), Expect = 0.003
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 222 HRRIHTGEKPYVCE 235
+GEKPY C
Sbjct: 3 SGSSGSGEKPYKCN 16
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 4e-12
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG +P+ C CGKSF K+ ++ H++ HTGE+
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 57.9 bits (141), Expect = 7e-12
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TGE+PY+C C +F + + H++ HTGE+
Sbjct: 7 GTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 46.4 bits (111), Expect = 1e-07
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY+C CG F + +S L+ H++ H ++
Sbjct: 3 SGSSGTGEKPYKCSDCGKSF-------------------TWKSRLRIHQK-CHTGERHSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 40.6 bits (96), Expect = 2e-05
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T K P+ C C KSF + L H+K H+G + +
Sbjct: 2 SSGSSGTGEK-PYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 39.4 bits (93), Expect = 4e-05
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEK 47
S TG +PY+C C K+F K + H HT +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGER-HSGPSS 45
Score = 39.1 bits (92), Expect = 4e-05
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 163 SHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
S + +K Y C+ C K+F + L H K HTGER
Sbjct: 2 SSGS-SGTGEKPYKCSDCGKSFTWKSRLRIHQK-CHTGERHSGP 43
Score = 32.9 bits (76), Expect = 0.008
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 222 HRRIHTGEKPYVCE 235
TGEKPY C
Sbjct: 3 SGSSGTGEKPYKCS 16
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 4e-12
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+PY+C+ C F +H+RIHTGEKP
Sbjct: 7 GTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 57.5 bits (140), Expect = 1e-11
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +P+ C CGK+F + +++ H+R HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 46.7 bits (112), Expect = 9e-08
Identities = 21/90 (23%), Positives = 25/90 (27%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY+C CG F SQ S L H+R
Sbjct: 3 SGSSGTGEKPYKCNECGKAF-------------------SQTSKLARHQR---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTGE+P
Sbjct: 34 --------------------IHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ T K P+ C +C K+F L +H++ H+G K +
Sbjct: 3 SGSSGTGEK-PYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 37.1 bits (87), Expect = 2e-04
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCE 46
S TG +PY+C C K F H HT K P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEK-PSGPS 44
Score = 34.4 bits (80), Expect = 0.002
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 221 KHRRIHTGEKPYVC 234
TGEKPY C
Sbjct: 2 SSGSSGTGEKPYKC 15
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 5e-12
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 88 VHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +P+ C VCGK+F + + H+R H+G+KP
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 56.4 bits (137), Expect = 2e-11
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+PY+C +C F + + H+RIH+G+KP
Sbjct: 7 GTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 47.1 bits (113), Expect = 7e-08
Identities = 18/90 (20%), Positives = 25/90 (27%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY+C CG F S R +L H+R
Sbjct: 3 SGSSGTGEKPYECSVCGKAF-------------------SHRQSLSVHQR---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
H+G++P
Sbjct: 34 --------------------IHSGKKPSGP 43
Score = 39.0 bits (92), Expect = 5e-05
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCE 46
S TG +PYEC C K F + + H H+ +K P
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKK-PSGPS 44
Score = 37.5 bits (88), Expect = 2e-04
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ T K P+ C C K+F +Q+L H++ HSG K +
Sbjct: 3 SGSSGTGEK-PYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 34.0 bits (79), Expect = 0.003
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 221 KHRRIHTGEKPYVC 234
TGEKPY C
Sbjct: 2 SSGSSGTGEKPYEC 15
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 58.7 bits (143), Expect = 5e-12
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG + + C CGK F R +++ H++ HTGEKP
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 57.9 bits (141), Expect = 7e-12
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+ Y+C+ C F +H++IHTGEKP
Sbjct: 7 GTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 2e-07
Identities = 18/90 (20%), Positives = 24/90 (26%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEK Y+C CG F S+ S L H++
Sbjct: 3 SGSSGTGEKRYKCNECGKVF-------------------SRNSQLSQHQK---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTGE+P
Sbjct: 34 --------------------IHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 5e-05
Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEK 47
S TG + Y+C C K F H HT K P
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEK-PSGPSS 45
Score = 38.3 bits (90), Expect = 1e-04
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ T K + C +C K F L QH+K H+G K +
Sbjct: 3 SGSSGTGEK-RYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.003
Identities = 6/15 (40%), Positives = 6/15 (40%)
Query: 221 KHRRIHTGEKPYVCE 235
TGEK Y C
Sbjct: 2 SSGSSGTGEKRYKCN 16
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 5e-12
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
+GE+PY+C C F H +HRRIHTG +P
Sbjct: 7 GSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 57.1 bits (139), Expect = 1e-11
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ +G +P+ C CGK+F R + +H R HTG +P
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 46.7 bits (112), Expect = 8e-08
Identities = 17/90 (18%), Positives = 24/90 (26%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ +GEKPY+C CG F + ++L H+R
Sbjct: 3 SGSSGSGEKPYKCSECGKAF-------------------HRHTHLNEHRR---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTG RP
Sbjct: 34 --------------------IHTGYRPSGP 43
Score = 38.2 bits (90), Expect = 1e-04
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + K P+ C +C K+F+ +L +H + H+G + +
Sbjct: 3 SGSSGSGEK-PYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 36.7 bits (86), Expect = 3e-04
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEK 47
S +G +PY+C C K F H HT + P
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYR-PSGPSS 45
Score = 34.8 bits (81), Expect = 0.001
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 221 KHRRIHTGEKPYVCE 235
+GEKPY C
Sbjct: 2 SSGSSGSGEKPYKCS 16
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 5e-12
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+PY+C+ C F + + +H+RIHTGEKP
Sbjct: 7 GTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 58.3 bits (142), Expect = 6e-12
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +P+ C CGK F + + H+R HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 2e-07
Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY+C CG F S L H+R H +K
Sbjct: 3 SGSSGTGEKPYKCNECGKVF-------------------RHNSYLSRHQR-IHTGEKPSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTE 75
+ T K P+ C +C K F L +H++ H+G K +
Sbjct: 3 SGSSGTGEK-PYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
Score = 37.9 bits (89), Expect = 1e-04
Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEK 47
S TG +PY+C C K F H HT K P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEK-PSGPSS 45
Score = 33.3 bits (77), Expect = 0.006
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 222 HRRIHTGEKPYVCE 235
TGEKPY C
Sbjct: 3 SGSSGTGEKPYKCN 16
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 5e-12
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
+GE+P++C C F H H RIHTGEKP
Sbjct: 7 GSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 57.9 bits (141), Expect = 7e-12
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ +G +PF C+ CGK+F + + H R HTGEKP
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 46.3 bits (111), Expect = 1e-07
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ +GEKP++C+ CG F Q +L SH R H +K
Sbjct: 3 SGSSGSGEKPFKCKECGKAF-------------------RQNIHLASHLR-IHTGEKPSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + + K PF C++C K+F +L H + H+G K +
Sbjct: 2 SSGSSGSGEK-PFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 5e-04
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCE 46
S +G +P++CK C K F +HL HT K P
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEK-PSGPS 44
Score = 33.6 bits (78), Expect = 0.004
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 221 KHRRIHTGEKPYVC 234
+GEKP+ C
Sbjct: 2 SSGSSGSGEKPFKC 15
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 58.3 bits (142), Expect = 5e-12
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
+ + +QC C F H +H+RIHTGEKP
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 56.8 bits (138), Expect = 2e-11
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ + + C CG+ F K+ + H+R HTGEKP
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 4e-07
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ + K +QC CG F + +S+L H+R H +K
Sbjct: 3 SGSSGSSTKSHQCHECGRGF-------------------TLKSHLNQHQR-IHTGEKPSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 38.3 bits (90), Expect = 8e-05
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + K C +C + F + +L QH++ H+G K +
Sbjct: 3 SGSSGSSTK-SHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 37.9 bits (89), Expect = 1e-04
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTH 36
S + + ++C C + F T K+HL H
Sbjct: 3 SGSSGSSTKSHQCHECGRGF----TLKSHLNQH 31
Score = 30.6 bits (70), Expect = 0.044
Identities = 2/14 (14%), Positives = 4/14 (28%)
Query: 221 KHRRIHTGEKPYVC 234
+ K + C
Sbjct: 2 SSGSSGSSTKSHQC 15
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 6e-12
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+PY+C+ C F + H+ IHTGEKP
Sbjct: 7 GTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 57.1 bits (139), Expect = 1e-11
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +P+ C CGK+F + + H+ HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 2e-08
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY+C CG FR SNL +H+ H +K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFR-------------------AHSNLTTHQV-IHTGEKPSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 38.6 bits (91), Expect = 6e-05
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEK 47
S TG +PY+C C K F + H V HT K P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEK-PSGPSS 45
Score = 38.6 bits (91), Expect = 6e-05
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T K P+ C +C K+F NL H+ H+G K +
Sbjct: 2 SSGSSGTGEK-PYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.003
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 222 HRRIHTGEKPYVCE 235
TGEKPY C
Sbjct: 3 SGSSGTGEKPYKCN 16
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 6e-12
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG +PF C CGKS+ ++ + H+R HTGEKP
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 8e-12
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TGE+P++C C ++ H +H+R+HTGEKP
Sbjct: 7 GTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 3e-07
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKP++C CG + +QR +L H+R H +K
Sbjct: 3 SGSSGTGEKPFKCGECGKSY-------------------NQRVHLTQHQR-VHTGEKPSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 39.0 bits (92), Expect = 4e-05
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ T K PF C +C KS+ + +L QH++ H+G K +
Sbjct: 3 SGSSGTGEK-PFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 37.9 bits (89), Expect = 1e-04
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEK 47
S TG +P++C C K++ + H HT K P
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEK-PSGPSS 45
Score = 33.6 bits (78), Expect = 0.004
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 221 KHRRIHTGEKPYVC 234
TGEKP+ C
Sbjct: 2 SSGSSGTGEKPFKC 15
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 6e-12
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +P+ C CGK F R + + H+ HTGEKP
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 57.9 bits (141), Expect = 7e-12
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+PY+C C F H +H+ IHTGEKP
Sbjct: 7 GTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 4e-07
Identities = 18/90 (20%), Positives = 24/90 (26%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY+C CG F + S+L H+
Sbjct: 3 SGSSGTGEKPYKCHECGKVF-------------------RRNSHLARHQL---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTGE+P
Sbjct: 34 --------------------IHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEK 47
S TG +PY+C C K F H + HT K P
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEK-PSGPSS 45
Score = 36.7 bits (86), Expect = 3e-04
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T K P+ C +C K F +L +H+ H+G K +
Sbjct: 2 SSGSSGTGEK-PYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.005
Identities = 7/15 (46%), Positives = 7/15 (46%)
Query: 221 KHRRIHTGEKPYVCE 235
TGEKPY C
Sbjct: 2 SSGSSGTGEKPYKCH 16
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 58.3 bits (142), Expect = 6e-12
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 195 KAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
++ GER ++C C F+ +F +HRRIHTGEKP
Sbjct: 4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 8e-12
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ G R C CGK F++ + H R HTGEKP
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 2e-08
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 60 QHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFIC 101
+ G + C++CGK F N H +HTG +P
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 46.8 bits (112), Expect = 9e-08
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ GE+ ++C CG F Q SN H+R H +K
Sbjct: 3 SGSSGHGERGHRCSDCGKFF-------------------LQASNFIQHRR-IHTGEKPSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 38.7 bits (91), Expect = 6e-05
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + C C K F N +QH + H+G K +
Sbjct: 3 SGSSGHGER-GHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S G R + C C K F+ + H HT K P
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEK-PSGP 43
Score = 34.0 bits (79), Expect = 0.003
Identities = 3/15 (20%), Positives = 5/15 (33%)
Query: 221 KHRRIHTGEKPYVCE 235
GE+ + C
Sbjct: 2 SSGSSGHGERGHRCS 16
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 8e-12
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +P++C CGK+F + + H+ HTGEKP
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 57.5 bits (140), Expect = 1e-11
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TG +PY C+ C F H+ IHTGEKP
Sbjct: 7 GTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 6e-08
Identities = 18/90 (20%), Positives = 23/90 (25%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TG KPY C CG F S S+L +H+
Sbjct: 3 SGSSGTGVKPYMCNECGKAF-------------------SVYSSLTTHQV---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTGE+P
Sbjct: 34 --------------------IHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 4e-05
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEK 47
S TG +PY C C K F + H V HT K P
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEK-PSGPSS 45
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVC 73
+ + T K P+ C +C K+F +L H+ H+G K
Sbjct: 2 SSGSSGTGVK-PYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.003
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 221 KHRRIHTGEKPYVCE 235
TG KPY+C
Sbjct: 2 SSGSSGTGVKPYMCN 16
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.6 bits (140), Expect = 9e-12
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+PY+C C F +H+R+HTG++P
Sbjct: 7 GTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 57.6 bits (140), Expect = 1e-11
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +P+ C CGK+F + H+R HTG++P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 46.4 bits (111), Expect = 1e-07
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 61 HEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFIC 101
+ +G K + C ECGKAFG + H +HTG RP
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 45.6 bits (109), Expect = 2e-07
Identities = 18/90 (20%), Positives = 23/90 (25%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY+C CG F S+ H+R
Sbjct: 3 SGSSGTGEKPYKCMECGKAF-------------------GDNSSCTQHQR---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTG+RP
Sbjct: 34 --------------------LHTGQRPSGP 43
Score = 38.3 bits (90), Expect = 9e-05
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEK 47
S TG +PY+C C K F + H HT ++ P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQR-PSGPSS 45
Score = 38.3 bits (90), Expect = 9e-05
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T K P+ C +C K+F + QH++ H+G + +
Sbjct: 2 SSGSSGTGEK-PYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 33.3 bits (77), Expect = 0.004
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 222 HRRIHTGEKPYVCE 235
TGEKPY C
Sbjct: 3 SGSSGTGEKPYKCM 16
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 57.5 bits (140), Expect = 1e-11
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG +P+ C+ CGK+F + + H+R HTGEKP
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 57.5 bits (140), Expect = 1e-11
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TGE+PY+C C F H +H+R+HTGEKP
Sbjct: 7 GTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY+C+ CG F SQ ++L H+R H +K
Sbjct: 3 SGSSGTGEKPYECKECGKAF-------------------SQTTHLIQHQR-VHTGEKPSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 38.3 bits (90), Expect = 1e-04
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ T K P+ C++C K+F +L+QH++ H+G K +
Sbjct: 3 SGSSGTGEK-PYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 36.7 bits (86), Expect = 3e-04
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTH 36
S TG +PYECK C K F + HL+ H
Sbjct: 3 SGSSGTGEKPYECKECGKAF----SQTTHLIQH 31
Score = 34.0 bits (79), Expect = 0.003
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 221 KHRRIHTGEKPYVC 234
TGEKPY C
Sbjct: 2 SSGSSGTGEKPYEC 15
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 57.7 bits (140), Expect = 1e-11
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 89 HLAVHTGNRPFICRV--CGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +PF C CG F R E+ H R+H+G KP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 51.1 bits (123), Expect = 2e-09
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 198 HTGERPYQCD--ICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+P+ C C F + +HRR H+G KP
Sbjct: 7 GTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 45.4 bits (108), Expect = 3e-07
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 18/63 (28%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKP+ C + G +RF S+ L H+R +H K
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRF-----------------SRSDELSRHRR-SHSGVKPSG 44
Query: 177 CTS 179
+S
Sbjct: 45 PSS 47
Score = 42.3 bits (100), Expect = 3e-06
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 61 HEKTHSGSKDFVCTE--CGKAFGTLRNLEVHLAVHTGNRPFIC 101
+ +G K F CT CG F L H H+G +P
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 38.8 bits (91), Expect = 6e-05
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 31 AHLVTHTDRKRPFSC--EKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + T ++PF+C C F L +H ++HSG K +
Sbjct: 2 SSGSSGT-GEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 34.6 bits (80), Expect = 0.002
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 4 HLVSHTGARPYECK--TCKKTFVSKYTYKAHLVTHTDRKRPFSCE 46
S TG +P+ C C F H +H+ +P
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHS-GVKPSGPS 46
Score = 32.3 bits (74), Expect = 0.014
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 222 HRRIHTGEKPYVCE 235
TGEKP+ C
Sbjct: 3 SGSSGTGEKPFACT 16
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 57.8 bits (139), Expect = 1e-11
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 71 FVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEK 125
++C ECG L+ H+ HT RP+ C C SF K + H ++ K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 50.9 bits (121), Expect = 4e-09
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 174 RYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
+Y C C K+ +L HI+ HT RPY C CN +F + KH + K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 46.6 bits (110), Expect = 1e-07
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 45 CEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTG 95
CE+C L +H +TH+ + + CT C +F T NL H+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 45.9 bits (108), Expect = 3e-07
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 14 YECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
Y C+ C K H+ THTD + P+ C C+ SF T+ NL +H K+ + SK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVR-PYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 45.5 bits (107), Expect = 4e-07
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 99 FICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGS 141
+IC CG + + +K H RTHT +PY C +C F+ KG+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGN 44
Score = 37.4 bits (86), Expect = 2e-04
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 1 MEDHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKR 41
++ H+ +HT RPY C C +F +K H+ + K+
Sbjct: 17 LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 34.7 bits (79), Expect = 0.002
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 204 YQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
Y C+ C P KKH R HT +PY C
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCT 33
Score = 30.8 bits (69), Expect = 0.058
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 156 SQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGER 202
+ S L+ H R TH + + Y CT C +FK + L H+K + +
Sbjct: 12 KKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMK-SKAHSK 56
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 1e-11
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
G++ ++C+ C TF H+RIHTGEKP
Sbjct: 7 GAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 57.1 bits (139), Expect = 1e-11
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ G + F C C K+F + + + H+R HTGEKP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ G+K ++C C F +Q S+L H+R H +K
Sbjct: 3 SGSSGAGKKLFKCNECKKTF-------------------TQSSSLTVHQR-IHTGEKPSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 39.0 bits (92), Expect = 5e-05
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + +K F C +C K+F +L H++ H+G K +
Sbjct: 2 SSGSSGAGKK-LFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S G + ++C CKKTF + H HT K P
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEK-PSGP 43
Score = 32.9 bits (76), Expect = 0.006
Identities = 3/13 (23%), Positives = 5/13 (38%)
Query: 222 HRRIHTGEKPYVC 234
G+K + C
Sbjct: 3 SGSSGAGKKLFKC 15
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 1e-11
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG +P CR CGKSF +++ H+R HTGE P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 57.2 bits (139), Expect = 1e-11
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TGE+P++C C +F + H+RIHTGE P
Sbjct: 7 GTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 44.8 bits (107), Expect = 4e-07
Identities = 19/90 (21%), Positives = 23/90 (25%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKP++C CG F S S L H+R
Sbjct: 3 SGSSGTGEKPHECRECGKSF-------------------SFNSQLIVHQR---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTGE P
Sbjct: 34 --------------------IHTGENPSGP 43
Score = 38.3 bits (90), Expect = 9e-05
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEK 47
S TG +P+EC+ C K+F H HT P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGEN-PSGPSS 45
Score = 37.1 bits (87), Expect = 2e-04
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ T K P C +C KSF L+ H++ H+G +
Sbjct: 3 SGSSGTGEK-PHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 34.0 bits (79), Expect = 0.003
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 221 KHRRIHTGEKPYVC 234
TGEKP+ C
Sbjct: 2 SSGSSGTGEKPHEC 15
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 1e-11
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ TG +P+ C CGK+F ++ + H+ TH+GEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 56.8 bits (138), Expect = 2e-11
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
TGE+PY+C+ C F H+ H+GEKP
Sbjct: 7 GTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 47.9 bits (115), Expect = 3e-08
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY+C CG F RS+L H+ TH +K
Sbjct: 3 SGSSGTGEKPYKCNECGKAF-------------------RARSSLAIHQA-THSGEKPSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 39.8 bits (94), Expect = 2e-05
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEK 47
S TG +PY+C C K F ++ + H TH+ K P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEK-PSGPSS 45
Score = 39.4 bits (93), Expect = 3e-05
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 163 SHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
S + +K Y C C KAF+ R L H +A H+GE+P
Sbjct: 2 SSGS-SGTGEKPYKCNECGKAFRARSSLAIH-QATHSGEKPSGP 43
Score = 38.3 bits (90), Expect = 8e-05
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ T K P+ C +C K+F + +L H+ THSG K +
Sbjct: 3 SGSSGTGEK-PYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 33.7 bits (78), Expect = 0.004
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 221 KHRRIHTGEKPYVC 234
TGEKPY C
Sbjct: 2 SSGSSGTGEKPYKC 15
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 2e-11
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ TG +P+ C CGK+F ++ + H+ HTG+KP
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 56.8 bits (138), Expect = 2e-11
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
TGE+PY+C+ C F H+ IHTG+KP
Sbjct: 7 GTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 46.8 bits (112), Expect = 9e-08
Identities = 19/90 (21%), Positives = 26/90 (28%), Gaps = 49/90 (54%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TGEKPY+C CG F S RS+L +H+
Sbjct: 3 SGSSGTGEKPYECNQCGKAF-------------------SVRSSLTTHQA---------- 33
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
HTG++P
Sbjct: 34 --------------------IHTGKKPSGP 43
Score = 39.8 bits (94), Expect = 3e-05
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEK 47
S TG +PYEC C K F + + H HT +K P
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKK-PSGPSS 45
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ T K P+ C +C K+F + +L H+ H+G K +
Sbjct: 3 SGSSGTGEK-PYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 33.7 bits (78), Expect = 0.004
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 221 KHRRIHTGEKPYVC 234
TGEKPY C
Sbjct: 2 SSGSSGTGEKPYEC 15
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 56.8 bits (138), Expect = 2e-11
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ +G +P+ C CGK+F+ K+ + HERTH G
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 55.6 bits (135), Expect = 4e-11
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
+GE+PY+C+ C FI+ H R H G
Sbjct: 7 GSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 46.4 bits (111), Expect = 1e-07
Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 20/61 (32%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ +GEKPY+C CG F +S L H+R TH
Sbjct: 3 SGSSGSGEKPYECNECGKAF-------------------IWKSLLIVHER-THAGVSGPS 42
Query: 177 C 177
Sbjct: 43 S 43
Score = 39.1 bits (92), Expect = 4e-05
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSC 45
S +G +PYEC C K F+ K H TH S
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVS-GPSS 43
Score = 38.7 bits (91), Expect = 7e-05
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 163 SHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
S + +K Y C C KAF + LL H + H G
Sbjct: 2 SSGS-SGSGEKPYECNECGKAFIWKSLLIVH-ERTHAGVSGPSS 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVC 73
+ + + K P+ C +C K+F + L+ HE+TH+G
Sbjct: 2 SSGSSGSGEK-PYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 33.3 bits (77), Expect = 0.005
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 222 HRRIHTGEKPYVC 234
+GEKPY C
Sbjct: 3 SGSSGSGEKPYEC 15
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 58.1 bits (140), Expect = 2e-11
Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 9/75 (12%)
Query: 64 THSGSKDFVCTECGKAFGTLRNLEVHL-AVHTGNRPFI--------CRVCGKSFVRKAEV 114
C + F T+ L H+ H G C GKSF K ++
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 115 KDHERTHTGEKPYQC 129
+H R HTGEK
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 55.0 bits (132), Expect = 3e-10
Identities = 17/75 (22%), Positives = 21/75 (28%), Gaps = 8/75 (10%)
Query: 168 THFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQ--------CDICNATFIYPEHF 219
P SC + F L H+ H G C +F
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 220 KKHRRIHTGEKPYVC 234
H R+HTGEK
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 48.0 bits (114), Expect = 1e-07
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 8 HTGARPYECKTCKKTFVSKYTYKAHL-VTHTDRKRP-------FSCEKCDKSFYTQQNLV 59
K+C +TF + + H+ + H C + KSF + LV
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 60 QHEKTHSGSKDFVCT 74
H + H+G K +
Sbjct: 80 NHIRVHTGEKSGPSS 94
Score = 45.0 bits (106), Expect = 1e-06
Identities = 17/95 (17%), Positives = 24/95 (25%), Gaps = 28/95 (29%)
Query: 120 THTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP--- 176
+ + C F S L +H H
Sbjct: 19 IDEAQLSRPKKSCDRTF-------------------STMHELVTHVTMEHVGGPEQNNHV 59
Query: 177 -----CTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
C K+FK + L HI+ HTGE+
Sbjct: 60 CYWEECPREGKSFKAKYKLVNHIR-VHTGEKSGPS 93
Score = 45.0 bits (106), Expect = 1e-06
Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 19/91 (20%)
Query: 92 VHTGNRPFICRVCGKSFVRKAEVKDH-ERTHTGEKP---YQCEFCGAQFRFKGSSGTESI 147
+ + C ++F E+ H H G + C + K
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFK----- 73
Query: 148 DKLLLCFLSQRSNLQSHKRATHFNDKRYPCT 178
+ L +H R H +K P +
Sbjct: 74 ---------AKYKLVNHIR-VHTGEKSGPSS 94
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 57.0 bits (138), Expect = 3e-11
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 61 HEKTHSGSKDFVCT--ECGKAFGTLRNLEVHLAVHTGNRPFICRV--CGKSFVRKAEVKD 116
+ S + +C+ CGK + +L+ H HTG +PF C C + F R E+
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSR 67
Query: 117 HERTH 121
H RTH
Sbjct: 68 HRRTH 72
Score = 54.7 bits (132), Expect = 2e-10
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 84 RNLEVHLAVHTGNRPFICRV--CGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGS 141
+ R IC CGK++ + + +K H RTHTGEKP+ C + G + RF S
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 142 S 142
Sbjct: 63 D 63
Score = 51.2 bits (123), Expect = 3e-09
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 195 KAAHTGERPYQCDI--CNATFIYPEHFKKHRRIHTGEKPYVCE 235
+ + R + C C T+ H K H R HTGEKP+ C
Sbjct: 9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCS 51
Score = 45.1 bits (107), Expect = 5e-07
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 4 HLVSHTGARPYECK--TCKKTFVSKYTYKAHLVTHTDRKRPFSC--EKCDKSFYTQQNLV 59
+ + R + C C KT+ KAH THT K PFSC + C++ F L
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEK-PFSCSWKGCERRFARSDELS 66
Query: 60 QHEKTH 65
+H +TH
Sbjct: 67 RHRRTH 72
Score = 44.3 bits (105), Expect = 1e-06
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 158 RSNLQSHKRATHFNDKRYPCT--SCPKAFKRRRLLDYHIKAAHTGERPYQCDI--CNATF 213
S + + + C+ C K + + L H + HTGE+P+ C C F
Sbjct: 2 SSGSSGPQI-DSSRIRSHICSHPGCGKTYFKSSHLKAHTRT-HTGEKPFSCSWKGCERRF 59
Query: 214 IYPEHFKKHRRIH 226
+ +HRR H
Sbjct: 60 ARSDELSRHRRTH 72
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 55.3 bits (134), Expect = 8e-11
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCE 235
+GE+ + CD C F Y + H+R+H GEK
Sbjct: 7 GSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 54.9 bits (133), Expect = 1e-10
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCE 130
+ +G + C CGK+F + ++ H+R H GEK
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 46.0 bits (110), Expect = 1e-07
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 61 HEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFIC 101
+ SG K C ECGK F + L +H VH G +
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 44.5 bits (106), Expect = 5e-07
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 20/63 (31%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ +GEK + C+ CG F S L+ H+R H +K
Sbjct: 3 SGSSGSGEKSHTCDECGKNF-------------------CYISALRIHQR-VHMGEKCSG 42
Query: 177 CTS 179
+S
Sbjct: 43 PSS 45
Score = 36.0 bits (84), Expect = 5e-04
Identities = 9/38 (23%), Positives = 13/38 (34%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKR 41
S +G + + C C K F + H H K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKC 40
Score = 36.0 bits (84), Expect = 6e-04
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCT 74
+ + K +C++C K+F L H++ H G K +
Sbjct: 3 SGSSGSGEK-SHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 32.6 bits (75), Expect = 0.008
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 163 SHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCD 207
S + +K + C C K F L H + H GE+
Sbjct: 2 SSGS-SGSGEKSHTCDECGKNFCYISALRIH-QRVHMGEKCSGPS 44
Score = 31.8 bits (73), Expect = 0.019
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 222 HRRIHTGEKPYVCE 235
+GEK + C+
Sbjct: 3 SGSSGSGEKSHTCD 16
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 54.9 bits (133), Expect = 9e-11
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKH-RRIHTGEKPYVC 234
TG++PY+C C FI +H R HTGEKP
Sbjct: 7 GTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 51.0 bits (123), Expect = 2e-09
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 19/63 (30%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYP 176
+ TG+KPY+C CG F Q ++L H R H +K
Sbjct: 3 SGSSGTGKKPYECIECGKAF-------------------IQNTSLIRHWRYYHTGEKPSG 43
Query: 177 CTS 179
+S
Sbjct: 44 PSS 46
Score = 44.9 bits (107), Expect = 4e-07
Identities = 17/70 (24%), Positives = 20/70 (28%), Gaps = 27/70 (38%)
Query: 60 QHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHER 119
+ +G K + C ECGKAF L H
Sbjct: 2 SSGSSGTGKKPYECIECGKAF----IQNTSLIRH-----------------------WRY 34
Query: 120 THTGEKPYQC 129
HTGEKP
Sbjct: 35 YHTGEKPSGP 44
Score = 36.4 bits (85), Expect = 4e-04
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTH 36
S TG +PYEC C K F L+ H
Sbjct: 3 SGSSGTGKKPYECIECGKAF----IQNTSLIRH 31
Score = 34.5 bits (80), Expect = 0.002
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHE-KTHSGSKDFVCT 74
+ + T +K P+ C +C K+F +L++H H+G K +
Sbjct: 2 SSGSSGTGKK-PYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 33.3 bits (77), Expect = 0.005
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 222 HRRIHTGEKPYVC 234
TG+KPY C
Sbjct: 3 SGSSGTGKKPYEC 15
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 54.9 bits (133), Expect = 9e-11
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 195 KAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPY 232
+ +G+R Y+C C +F H RIHTG P
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 53.3 bits (129), Expect = 3e-10
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 93 HTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPY 127
+G R + C+ CGKSF +K + HER HTG P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 37.6 bits (88), Expect = 1e-04
Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 49/87 (56%)
Query: 118 ERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPC 177
+G++ Y+C+ CG FR Q+ +L H+R
Sbjct: 2 SSGSSGQRVYECQECGKSFR-------------------QKGSLTLHER----------- 31
Query: 178 TSCPKAFKRRRLLDYHIKAAHTGERPY 204
HTG P
Sbjct: 32 -------------------IHTGSGPS 39
Score = 36.0 bits (84), Expect = 6e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 7 SHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
+G R YEC+ C K+F K + H HT
Sbjct: 4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSG 37
Score = 34.5 bits (80), Expect = 0.002
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 35 THTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+ ++ + C++C KSF + +L HE+ H+GS
Sbjct: 4 GSSGQR-VYECQECGKSFRQKGSLTLHERIHTGSG 37
Score = 25.2 bits (56), Expect = 4.1
Identities = 3/11 (27%), Positives = 6/11 (54%)
Query: 224 RIHTGEKPYVC 234
+G++ Y C
Sbjct: 3 SGSSGQRVYEC 13
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 54.5 bits (132), Expect = 1e-10
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPY 127
G +P+ C CGK+F +K + H R HTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 54.1 bits (131), Expect = 2e-10
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPY 232
GE+PY+CD C F H R+HTG P
Sbjct: 6 SGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 46.4 bits (111), Expect = 1e-07
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 61 HEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPF 99
+ G K + C +CGKAF +L VH+ VHTG+ P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 45.3 bits (108), Expect = 2e-07
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 20/59 (33%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRY 175
+ GEKPY+C+ CG F SQ+ +L H R H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAF-------------------SQKGSLIVHIR-VHTGSGPS 40
Score = 38.3 bits (90), Expect = 7e-05
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+ K P+ C++C K+F + +L+ H + H+GS
Sbjct: 1 GSSGSSGGEK-PYRCDQCGKAFSQKGSLIVHIRVHTGSG 38
Score = 37.5 bits (88), Expect = 2e-04
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFS 44
S G +PY C C K F K + H+ HT P S
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSG-PSS 41
Score = 36.4 bits (85), Expect = 3e-04
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 164 HKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPY 204
+ +K Y C C KAF ++ L HI+ HTG P
Sbjct: 2 SSG-SSGGEKPYRCDQCGKAFSQKGSLIVHIR-VHTGSGPS 40
Score = 33.3 bits (77), Expect = 0.005
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 222 HRRIHTGEKPYVC 234
GEKPY C
Sbjct: 2 SSGSSGGEKPYRC 14
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 53.4 bits (129), Expect = 3e-10
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 93 HTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPY 127
G P++C CGKSF ++ + H+R+ + P
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 51.1 bits (123), Expect = 2e-09
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 195 KAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPY 232
+ GE PY C C +F H+R + P
Sbjct: 3 SGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 45.0 bits (107), Expect = 3e-07
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 61 HEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPF 99
+ G ++C +CGK+F +L VH + + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 38.4 bits (90), Expect = 7e-05
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 19/50 (38%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKR 166
+ GE PY C CG F +QR +L H+R
Sbjct: 2 SSGSSGGETPYLCGQCGKSF-------------------TQRGSLAVHQR 32
Score = 38.0 bits (89), Expect = 9e-05
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 7 SHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFS 44
S G PY C C K+F + + H + + + P S
Sbjct: 5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSCS-QSGPSS 41
Score = 36.1 bits (84), Expect = 4e-04
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 41 RPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
P+ C +C KSF + +L H+++ S S
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSG 38
Score = 33.0 bits (76), Expect = 0.006
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 168 THFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPY 204
+ + Y C C K+F +R L H + + + P
Sbjct: 5 SSGGETPYLCGQCGKSFTQRGSLAVH-QRSCSQSGPS 40
Score = 27.6 bits (62), Expect = 0.58
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 222 HRRIHTGEKPYVC 234
GE PY+C
Sbjct: 2 SSGSSGGETPYLC 14
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 51.2 bits (123), Expect = 2e-09
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 195 KAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
+ +GE+PY C C TF +H+++HT +
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 48.9 bits (117), Expect = 1e-08
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 91 AVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ +G +P+ C C ++F + H++ HT +
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 39.6 bits (93), Expect = 3e-05
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 35 THTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSG 67
+ K P+SC +C ++F LVQH+K H+
Sbjct: 4 GSSGEK-PYSCAECKETFSDNNRLVQHQKMHTV 35
Score = 39.2 bits (92), Expect = 3e-05
Identities = 11/39 (28%), Positives = 14/39 (35%)
Query: 63 KTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFIC 101
SG K + C EC + F L H +HT
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 37.3 bits (87), Expect = 2e-04
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 7 SHTGARPYECKTCKKTFVSKYTYKAHLVTH 36
+G +PY C CK+TF + LV H
Sbjct: 4 GSSGEKPYSCAECKETF----SDNNRLVQH 29
Score = 35.0 bits (81), Expect = 0.001
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 19/48 (39%)
Query: 119 RTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKR 166
+GEKPY C C F S + L H++
Sbjct: 3 SGSSGEKPYSCAECKETF-------------------SDNNRLVQHQK 31
Score = 33.5 bits (77), Expect = 0.004
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 167 ATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQC 206
+ +K Y C C + F L H K HT +
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQK-MHTVKSGPSS 41
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 49.1 bits (118), Expect = 1e-08
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
T + Y C+ C F H +H++IHT +
Sbjct: 7 GTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQC 129
+ T ++ + C CGK+F R + H++ HT +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 44.5 bits (106), Expect = 6e-07
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 60 QHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFIC 101
+ + SK + C ECGKAF + +L H +HT
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 38.3 bits (90), Expect = 7e-05
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 116 DHERTHTGEKPYQCEFCGAQFR 137
+ T K Y C CG F
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFT 23
Score = 37.2 bits (87), Expect = 2e-04
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 3 DHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFS 44
S T ++ Y C C K F + H HT + P S
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 36.8 bits (86), Expect = 3e-04
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSG 67
+ TD K ++C +C K+F +L +H+K H+
Sbjct: 3 SGSSGTDSK-SYNCNECGKAFTRIFHLTRHQKIHTR 37
Score = 32.9 bits (76), Expect = 0.007
Identities = 4/14 (28%), Positives = 4/14 (28%)
Query: 221 KHRRIHTGEKPYVC 234
T K Y C
Sbjct: 2 SSGSSGTDSKSYNC 15
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 49.2 bits (117), Expect = 1e-08
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 93 HTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFC 132
+ C +CGK F + H+ +H+GEKPY
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 48.4 bits (115), Expect = 2e-08
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 197 AHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVC 234
+ + C+IC F H +H+ H+GEKPY
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSS 43
Score = 41.5 bits (97), Expect = 8e-06
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 63 KTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVC 104
+ K C CGK F + +L H H+G +P+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 37.2 bits (86), Expect = 2e-04
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 173 KRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNA 211
K+ C C K F+ L+ H K +H+GE+PY +
Sbjct: 11 KQVACEICGKIFRDVYHLNRH-KLSHSGEKPYSSGPSSG 48
Score = 37.2 bits (86), Expect = 2e-04
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTEC 76
++ +CE C K F +L +H+ +HSG K +
Sbjct: 10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 35.3 bits (81), Expect = 0.001
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 7 SHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKC 48
S + C+ C K F Y H ++H+ K P+S
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEK-PYSSGPS 46
Score = 30.3 bits (68), Expect = 0.076
Identities = 13/62 (20%), Positives = 17/62 (27%), Gaps = 20/62 (32%)
Query: 119 RTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKRYPCT 178
+ K CE CG FR +L HK +H +K Y
Sbjct: 5 SSGRTRKQVACEICGKIFR-------------------DVYHLNRHKL-SHSGEKPYSSG 44
Query: 179 SC 180
Sbjct: 45 PS 46
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 46.4 bits (109), Expect = 4e-07
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Query: 36 HTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTG 95
+ K + C C+ + HE+ + VC C F + + H +
Sbjct: 10 PVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHES-KCE 66
Query: 96 NRPFICRVCGKSFVRKAEVKDHERT 120
+ C C ++F + H+
Sbjct: 67 YKKLTCLECMRTFKSSFSIWRHQVE 91
Score = 46.0 bits (108), Expect = 7e-07
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 10 GARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
Y+C+ C S +H + C C F++ + +HE K
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLC---RNAAVCPYCSLRFFSPELKQEHESKCEYKK 69
Query: 70 DFVCTECGKAFGTLRNLEVH-LAVHTGN 96
C EC + F + ++ H + VH N
Sbjct: 70 -LTCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 41.0 bits (95), Expect = 4e-05
Identities = 14/82 (17%), Positives = 23/82 (28%), Gaps = 3/82 (3%)
Query: 60 QHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHER 119
+ + C C +L H + +C C F ++HE
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHE- 62
Query: 120 THTGEKPYQCEFCGAQFRFKGS 141
+ K C C F+ S
Sbjct: 63 SKCEYKKLTCLECMRTFKSSFS 84
Score = 39.5 bits (91), Expect = 2e-04
Identities = 17/105 (16%), Positives = 26/105 (24%), Gaps = 23/105 (21%)
Query: 95 GNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCF 154
+ CR+C E HER C +C +F
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPE-------------- 56
Query: 155 LSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHT 199
+ + K+ C C + FK + H H
Sbjct: 57 -------LKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 35.6 bits (81), Expect = 0.003
Identities = 19/109 (17%), Positives = 27/109 (24%), Gaps = 24/109 (22%)
Query: 115 KDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKRATHFNDKR 174
++ YQC C A+ S SH+R
Sbjct: 5 SSGASPVENKEVYQCRLCNAKL-------------------SSLLEQGSHERLCR---NA 42
Query: 175 YPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHR 223
C C F L H + + C C TF +H+
Sbjct: 43 AVCPYCSLRFFSPELKQEH--ESKCEYKKLTCLECMRTFKSSFSIWRHQ 89
Score = 31.0 bits (69), Expect = 0.12
Identities = 13/64 (20%), Positives = 18/64 (28%), Gaps = 4/64 (6%)
Query: 171 NDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
N + Y C C H + C C+ F PE ++H K
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNA---AVCPYCSLRFFSPELKQEHES-KCEYK 68
Query: 231 PYVC 234
C
Sbjct: 69 KLTC 72
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 44.5 bits (105), Expect = 5e-07
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 195 KAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKP 231
++ GE P++C C+ F + +H R H +
Sbjct: 4 GSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 43.3 bits (102), Expect = 1e-06
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
+ G PF C C + F ++ + HERTH +
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 39.8 bits (93), Expect = 3e-05
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 31 AHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+ + PF C KCD+ F + LVQHE+TH+
Sbjct: 2 SSGSSGAGEN-PFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 37.9 bits (88), Expect = 1e-04
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 60 QHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRP 98
+ +G F C++C + F L H H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 35.6 bits (82), Expect = 7e-04
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRP 42
S G P++C C + F + H TH + P
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41
Score = 31.4 bits (71), Expect = 0.024
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 19/50 (38%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQSHKR 166
+ GE P++C C F +QR+ L H+R
Sbjct: 3 SGSSGAGENPFKCSKCDRVF-------------------TQRNYLVQHER 33
Score = 29.1 bits (65), Expect = 0.18
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 166 RATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERP 203
++ + + C+ C + F +R L H + H +
Sbjct: 4 GSSGAGENPFKCSKCDRVFTQRNYLVQHER-THARKSG 40
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 44.9 bits (105), Expect = 2e-06
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 3 DHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQH- 61
L++ + C C F S + K H+ C C K F + + + H
Sbjct: 64 YRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE---HTKVCPVCKKEFTSTDSALDHV 120
Query: 62 EKTHSG 67
K H+
Sbjct: 121 CKKHNI 126
Score = 39.9 bits (92), Expect = 1e-04
Identities = 14/108 (12%), Positives = 26/108 (24%), Gaps = 3/108 (2%)
Query: 30 KAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVH 89
+ + + + L +K + + +
Sbjct: 7 DSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQ-LLDESSYLYR 65
Query: 90 LAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFR 137
L F+C +C F +K H R E C C +F
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFT 111
Score = 33.4 bits (75), Expect = 0.027
Identities = 13/98 (13%), Positives = 21/98 (21%), Gaps = 22/98 (22%)
Query: 103 VCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSNLQ 162
+ + ++ + C C F +L+
Sbjct: 51 IHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFS-------------------SSVSLK 91
Query: 163 SHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTG 200
H R T C C K F H+ H
Sbjct: 92 QHIRYTE---HTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 33.0 bits (74), Expect = 0.033
Identities = 19/140 (13%), Positives = 39/140 (27%), Gaps = 22/140 (15%)
Query: 92 VHTGNRPFIC--RVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDK 149
V +G++ ++ + + + H+ T ++ + +
Sbjct: 6 VDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQ---------- 55
Query: 150 LLLCFLSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDIC 209
L S+ A+ ++ C C F L HI E C +C
Sbjct: 56 -----LLDESSYLYRLLASK-AISQFVCPLCLMPFSSSVSLKQHI---RYTEHTKVCPVC 106
Query: 210 NATFIYPEHFKKH-RRIHTG 228
F + H + H
Sbjct: 107 KKEFTSTDSALDHVCKKHNI 126
Score = 31.4 bits (70), Expect = 0.13
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 197 AHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCEV 236
A + C +C F K+H R E VC V
Sbjct: 68 ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPV 105
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 40.4 bits (95), Expect = 1e-05
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEK 125
R F+C VC ++F R+ +K H R+HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 39.6 bits (93), Expect = 2e-05
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 202 RPYQCDICNATFIYPEHFKKHRRIHTGEK 230
R + C++C F EH K+H R HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 31.5 bits (72), Expect = 0.017
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 41 RPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
R F CE C ++F Q++L +H ++H+ K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.1 bits (58), Expect = 1.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
R + C+ C + F + K H +HT+ K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 2e-05
Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 54/205 (26%)
Query: 42 PFSCEKCDKSFYTQQNLVQHEKTHSG----SKDFVCTECGKAFGTLRN----LEVH--LA 91
P E+ S T+ + Q ++ ++ +K V + + LR L +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL--QPYLKLRQALLELRPAKNVL 154
Query: 92 VH--TGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQF--RFKGSSGTESI 147
+ G GK++V ++ QC+ F K + E++
Sbjct: 155 IDGVLG--------SGKTWVALDVCLSYKV--------QCKMDFKIFWLNLKNCNSPETV 198
Query: 148 DKLLLCFLSQ-RSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQ- 205
++L L Q N S R+ H ++ + S RRLL +PY+
Sbjct: 199 LEMLQKLLYQIDPNWTS--RSDHSSNIKLRIHSIQAEL--RRLLK---------SKPYEN 245
Query: 206 C-----DICNATFIYPEHFKKHRRI 225
C ++ NA F +I
Sbjct: 246 CLLVLLNVQNAKAW--NAFNLSCKI 268
Score = 33.7 bits (76), Expect = 0.067
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 16/72 (22%)
Query: 142 SGTESIDKLLLCFLSQRSNLQS-HKRA-THFNDKR-YPCTSCPKAFKRRRLLD------- 191
T SI + L + N + H+ H+N + + + LD
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY-----LDQYFYSHI 477
Query: 192 -YHIKAAHTGER 202
+H+K ER
Sbjct: 478 GHHLKNIEHPER 489
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 40.0 bits (94), Expect = 2e-05
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 89 HLAVHTGNRPFICRVCGKSFVRKAEVKDHERTH 121
TG +PF C C +SF R + H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 39.6 bits (93), Expect = 2e-05
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIH 226
TG +P+QC C+ +F +H HR+ H
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 36.2 bits (84), Expect = 4e-04
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 117 HERTHTGEKPYQCEFCGAQF 136
R TG KP+QC C F
Sbjct: 2 STRGSTGIKPFQCPDCDRSF 21
Score = 32.3 bits (74), Expect = 0.009
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 32 HLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTH 65
T K PF C CD+SF +L H K H
Sbjct: 2 STRGSTGIK-PFQCPDCDRSFSRSDHLALHRKRH 34
Score = 31.2 bits (71), Expect = 0.024
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 61 HEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVH 93
+ +G K F C +C ++F +L +H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 30.4 bits (69), Expect = 0.042
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTH 36
TG +P++C C ++F H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 28.5 bits (64), Expect = 0.24
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 222 HRRIHTGEKPYVCEV 236
R TG KP+ C
Sbjct: 2 STRGSTGIKPFQCPD 16
Score = 28.5 bits (64), Expect = 0.27
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 168 THFNDKRYPCTSCPKAFKRRRLLDYHIK 195
K + C C ++F R L H K
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRK 32
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 39.5 bits (93), Expect = 2e-05
Identities = 18/31 (58%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 97 RPFICRV--CGKSFVRKAEVKDHERTHTGEK 125
RPF+C CGK F R E++ H+RTHTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 32.6 bits (75), Expect = 0.007
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 202 RPYQCDI--CNATFIYPEHFKKHRRIHTGEK 230
RP+ C C F + ++H+R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 29.5 bits (67), Expect = 0.081
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 41 RPFSC--EKCDKSFYTQQNLVQHEKTHSGSK 69
RPF C C K F L +H++TH+G K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 24.1 bits (53), Expect = 7.5
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 69 KDFVCT--ECGKAFGTLRNLEVHLAVHTGNR 97
+ F+CT CGK F L+ H HTG +
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 43.7 bits (102), Expect = 5e-05
Identities = 10/52 (19%), Positives = 15/52 (28%)
Query: 42 PFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVH 93
E V T S + C C + +L+ H+A H
Sbjct: 152 TRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 37.9 bits (87), Expect = 0.003
Identities = 5/54 (9%), Positives = 11/54 (20%)
Query: 68 SKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTH 121
+ + + C VC ++ H +H
Sbjct: 150 MSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 36.8 bits (84), Expect = 0.008
Identities = 8/51 (15%), Positives = 13/51 (25%), Gaps = 1/51 (1%)
Query: 176 PCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIH 226
+ + + YQC +C+A P H H
Sbjct: 154 IAEATSAIVSKHPARVGLPPT-ASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 36.4 bits (83), Expect = 0.010
Identities = 6/61 (9%), Positives = 14/61 (22%), Gaps = 1/61 (1%)
Query: 6 VSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTH 65
+ + T + + C C ++ +L H +H
Sbjct: 145 SNQKPMSTRIAEATSAIVSKHPARVGLPPTAS-SGHGYQCHVCSAVLFSPLDLDAHVASH 203
Query: 66 S 66
Sbjct: 204 G 204
Score = 36.4 bits (83), Expect = 0.010
Identities = 10/72 (13%), Positives = 15/72 (20%), Gaps = 20/72 (27%)
Query: 98 PFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQ 157
I + T + YQC C A
Sbjct: 152 TRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVL-------------------FS 192
Query: 158 RSNLQSHKRATH 169
+L +H +H
Sbjct: 193 PLDLDAHVA-SH 203
Score = 29.8 bits (66), Expect = 1.2
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTD 38
+ + Y+C C S AH+ +H
Sbjct: 171 LPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGL 205
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 38.6 bits (89), Expect = 2e-04
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 4/82 (4%)
Query: 159 SNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGER---PYQCDICNATFIY 215
+ H + + Y C C + +H+ + H Y C CN
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 216 PEHFKKH-RRIHTGEKPYVCEV 236
+ +H + H GE+ + +
Sbjct: 63 YDALSEHNLKYHPGEENFKLTM 84
Score = 36.7 bits (84), Expect = 0.001
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVT-HTDRKR--PFSCEKCDKSFYTQQNLVQ 60
+ + YECK C + H+ + H + + C +C+ L +
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 61 H-EKTHSGSKDFVCT 74
H K H G ++F T
Sbjct: 69 HNLKYHPGEENFKLT 83
Score = 32.8 bits (74), Expect = 0.025
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 24/96 (25%)
Query: 117 HERTHTGEKPYQCEFCGAQFRFKGSSGTESIDKLLLCFLSQRSN-LQSHKRATHFN---D 172
+++ E Y+C++C F + N H + H N +
Sbjct: 9 NQQNKKVEGGYECKYC--------------------TFQTPDLNMFTFHVDSEHPNVVLN 48
Query: 173 KRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDI 208
Y C C KR L H H GE ++ +
Sbjct: 49 SSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTM 84
Score = 32.1 bits (72), Expect = 0.050
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 57 NLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHL-AVHTG---NRPFICRVCGKSFVRKA 112
+ +++ + C C L H+ + H N ++C C R
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 113 EVKDH-ERTHTGEKPYQC 129
+ +H + H GE+ ++
Sbjct: 65 ALSEHNLKYHPGEENFKL 82
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 34.6 bits (80), Expect = 0.001
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 97 RPFICRV--CGKSFVRKAEVKDHERTHTGEK 125
+ IC + CGK + + + ++ H R HTGE+
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 34.6 bits (80), Expect = 0.002
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 199 TGERPYQCDI--CNATFIYPEHFKKHRRIHTGEK 230
++ + C I C + H + H R HTGE+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 27.7 bits (62), Expect = 0.41
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 39 RKRPFSC--EKCDKSFYTQQNLVQHEKTHSGSK 69
+K+ C + C K + +L H + H+G +
Sbjct: 5 KKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 27.3 bits (61), Expect = 0.57
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 66 SGSKDFVCT--ECGKAFGTLRNLEVHLAVHTGNR 97
K +C CGK +G +L HL HTG R
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 34.3 bits (78), Expect = 0.002
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 93 HTGNRPFICRVCGKSFVRKAEVKDHERTHT 122
+G RPF+CR+C +F KA H + HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 32.4 bits (73), Expect = 0.010
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 197 AHTGERPYQCDICNATFIYPEHFKKHRRIHT 227
+G+RP+ C IC + F + +H ++HT
Sbjct: 1 GSSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 32.0 bits (72), Expect = 0.011
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 8 HTGARPYECKTCKKTFVSKYTYKAHLVTHTD 38
+G RP+ C+ C F +K HL HTD
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 30.5 bits (68), Expect = 0.045
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 65 HSGSKDFVCTECGKAFGTLRNLEVHLAVHT 94
SG + FVC C AF T N HL VHT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 26.6 bits (58), Expect = 1.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGS 68
KRPF C C +F T+ N +H K H+ +
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKVHTDT 33
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 33.6 bits (76), Expect = 0.004
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEK 125
+P++C C + F ++ H R HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 33.2 bits (75), Expect = 0.004
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 202 RPYQCDICNATFIYPEHFKKHRRIHTGEK 230
+PY C C F P ++H RIHTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 28.2 bits (62), Expect = 0.30
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 41 RPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+P+ C C + F L +H + H+G K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 26.6 bits (58), Expect = 1.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNR 97
K +VC C + F L+ H+ +HTG +
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 25.5 bits (55), Expect = 2.2
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
+PY C C++ F + H+ HT K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 33.7 bits (76), Expect = 0.004
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHTG 228
+ +GE+PY C +C F + H R H G
Sbjct: 3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 31.4 bits (70), Expect = 0.028
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 93 HTGNRPFICRVCGKSFVRKAEVKDHERTHTG 123
+G +P+ C VCG F RK + H R+H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 28.3 bits (62), Expect = 0.29
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 169 HFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTG 200
+K Y C C FKR+ + YH+++
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 28.3 bits (62), Expect = 0.34
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSGS 68
++P+SC C F + + H ++H GS
Sbjct: 8 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 27.2 bits (59), Expect = 0.90
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 8 HTGARPYECKTCKKTFVSKYTYKAHLVTH 36
+G +PY C C F K H+ +H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 25.3 bits (54), Expect = 4.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 121 HTGEKPYQCEFCGAQFRFK 139
+GEKPY C CG +F+ K
Sbjct: 5 SSGEKPYSCPVCGLRFKRK 23
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 33.8 bits (76), Expect = 0.012
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 159 SNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHT 199
L+ H C C K FK + L+YH A H+
Sbjct: 39 VGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Score = 30.7 bits (68), Expect = 0.15
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 60 QHEKTHSGSKDFVCTECGKAF-GTLRNLEVHLAV-HTGNRPFICRVCGKSFVRKAEVKDH 117
Q ++ + VC C TL L+ H+ V C+ C K F KA + H
Sbjct: 14 QWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYH 73
Query: 118 ERTHTGEKP 126
KP
Sbjct: 74 TMAEHSAKP 82
Score = 28.4 bits (62), Expect = 0.82
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 14 YECKTCKKTFVSKYT-YKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
C TC K H+ + C+ C K F ++ L H +K
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Score = 27.2 bits (59), Expect = 2.7
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 173 KRYPCTSCPKAFKRRRL--LDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
C +C R+ L L H++ + +C C F H K
Sbjct: 23 GEAVCPTC-NVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Query: 231 P 231
P
Sbjct: 82 P 82
Score = 26.4 bits (57), Expect = 4.6
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 6 VSHTGARPYECKTCKKTFVSKYTYKAH-LVTHTDRKRPFSCEKCDKS 51
V +C+ C+K F SK H + H+ + + +S
Sbjct: 47 VCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDAEASEGGES 93
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 32.1 bits (72), Expect = 0.018
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHT 227
++ E+ ++C+ C TF ++ +H RIHT
Sbjct: 5 SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 29.8 bits (66), Expect = 0.099
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHS 66
++ F C KC+K+F + L QHE+ H+
Sbjct: 10 EKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 27.5 bits (60), Expect = 0.63
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 64 THSGSKDFVCTECGKAFGTLRNLEVHLAVHT 94
+ K F C +C K F + L H +HT
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 27.5 bits (60), Expect = 0.70
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 91 AVHTGNRPFICRVCGKSFVRKAEVKDHERTHT 122
+ + F C C K+F + HER HT
Sbjct: 5 SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 31.3 bits (70), Expect = 0.024
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGEK 125
+P C +CGK+F + + + H R HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 25.1 bits (54), Expect = 2.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 202 RPYQCDICNATFIYPEHFKKHRRIHTGEK 230
+P QC +C F H R HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 24.3 bits (52), Expect = 7.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 41 RPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+P C C K+F +L+ H + H+G K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 24.0 bits (51), Expect = 9.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTGNR 97
K C CGKAF +L H+ HTG +
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.3 bits (70), Expect = 0.025
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 39 RKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKD 70
R++ C +C + F+ +L++H+ H G K+
Sbjct: 9 REKSHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
Score = 29.0 bits (64), Expect = 0.21
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
++ + E+ +QC C F +H+ +H G+K
Sbjct: 5 SSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 27.9 bits (61), Expect = 0.45
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 94 TGNRPFICRVCGKSFVRKAEVKDHERTHTGEK 125
+ + CR CG+ F + + +H+ H G+K
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 26.7 bits (58), Expect = 1.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 66 SGSKDFVCTECGKAFGTLRNLEVHLAVHTGNR 97
S K C ECG+ F +L H +H G +
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 25.5 bits (55), Expect = 3.7
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 7 SHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKR 41
S + + ++C+ C + F + H V H +K
Sbjct: 6 SGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 31.0 bits (70), Expect = 0.038
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 96 NRPFICRV--CGKSFVRKAEVKDHERTHTGEK 125
++ F C C K+F R+ ++ H +TH ++
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 28.3 bits (63), Expect = 0.36
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 69 KDFVCT--ECGKAFGTLRNLEVHLAVHTGNR 97
K F C C K F N+ H+ H +R
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 27.5 bits (61), Expect = 0.71
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 3 DHLVSHTGARPYEC--KTCKKTFVSKYTYKAHLVTHTDRK 40
D V + +EC C KTF +Y ++H+ TH + +
Sbjct: 8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 25.2 bits (55), Expect = 4.4
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 172 DKRYPCT--SCPKAFKRRRLLDYHIKAAHTGER 202
DK + C C K FKRR + HI+ H +R
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQ-THLEDR 47
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 31.0 bits (69), Expect = 0.041
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 95 GNRPFICRVCGKSFVRKAEVKDHERTHTGE 124
C+ CGK F + + +H+ H GE
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEHQALHAGE 38
Score = 28.7 bits (63), Expect = 0.24
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSG 67
K C++C K F L++H+ H+G
Sbjct: 10 KTTSECQECGKIFRHSSLLIEHQALHAG 37
Score = 27.6 bits (60), Expect = 0.64
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 66 SGSKDFVCTECGKAFGTLRNLEVHLAVHTG 95
+ C ECGK F L H A+H G
Sbjct: 8 AAKTTSECQECGKIFRHSSLLIEHQALHAG 37
Score = 26.4 bits (57), Expect = 1.5
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 177 CTSCPKAFKRRRLLDYHIKAAHTGE 201
C C K F+ LL H +A H GE
Sbjct: 15 CQECGKIFRHSSLLIEH-QALHAGE 38
Score = 24.5 bits (52), Expect = 7.9
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHTGE 229
++ + +C C F + +H+ +H GE
Sbjct: 5 SSGAAKTTSECQECGKIFRHSSLLIEHQALHAGE 38
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 29.8 bits (66), Expect = 0.062
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTG 123
RP+ C VCGK F K +++ H R HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 26.7 bits (58), Expect = 0.85
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 202 RPYQCDICNATFIYPEHFKKHRRIHTG 228
RPY C +C F + H R+HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 26.3 bits (57), Expect = 1.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 69 KDFVCTECGKAFGTLRNLEVHLAVHTG 95
+ + C+ CGK F +E H VHTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 24.8 bits (53), Expect = 4.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 41 RPFSCEKCDKSFYTQQNLVQHEKTHSG 67
RP+SC C K F + + H + H+G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 24.4 bits (52), Expect = 6.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVTHT 37
RPY C C K F K+ + H HT
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHT 27
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.4 bits (65), Expect = 0.13
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 94 TGNRPFICRVCGKSFVRKAEVKDHERTHTGEK 125
+ +P+ C C + KA + H R HTGEK
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 27.9 bits (61), Expect = 0.35
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
++ + +PY+C C+ + H R HTGEK
Sbjct: 2 SSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 27.5 bits (60), Expect = 0.49
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 39 RKRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+P+ C +C + + NL H + H+G K
Sbjct: 6 SGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 26.7 bits (58), Expect = 1.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 66 SGSKDFVCTECGKAFGTLRNLEVHLAVHTGNR 97
S K + C +C A NL VHL HTG +
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 30.0 bits (67), Expect = 0.18
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 56 QNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVK 115
HE+T + VC C ++ L+ H + G R +C CG++ + K ++K
Sbjct: 3 SGSSGHEETECPLRLAVCQHCDLEL-SILKLKEHE-DYCGARTELCGNCGRNVLVK-DLK 59
Query: 116 DHERTHTGEK 125
H E
Sbjct: 60 THPEVCGREG 69
Score = 28.4 bits (63), Expect = 0.57
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 83 LRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFK 139
H R +C+ C ++K+HE + G + C CG K
Sbjct: 2 SSGSSGHEETECPLRLAVCQHCDLELSIL-KLKEHE-DYCGARTELCGNCGRNVLVK 56
Score = 26.1 bits (57), Expect = 3.3
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 4/70 (5%)
Query: 1 MEDHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQ 60
H + R C+ C +S K H R C C ++ ++L
Sbjct: 5 SSGHEETECPLRLAVCQHCDL-ELSILKLKEHED--YCGARTELCGNCGRNV-LVKDLKT 60
Query: 61 HEKTHSGSKD 70
H +
Sbjct: 61 HPEVCGREGS 70
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.7 bits (63), Expect = 0.19
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 99 FICRVCGKSFVRKAEVKDHERTHTGEK 125
F C C K F K ++ H R HT EK
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 26.7 bits (58), Expect = 0.93
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 7 SHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
S + + + C+ C K F K++ +AHL HT+ K
Sbjct: 3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 26.7 bits (58), Expect = 0.96
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 43 FSCEKCDKSFYTQQNLVQHEKTHSGSK 69
F+CE C+K F + +L H + H+ K
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 26.7 bits (58), Expect = 1.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 204 YQCDICNATFIYPEHFKKHRRIHTGEK 230
+ C+ CN F + + H RIHT EK
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 25.6 bits (55), Expect = 2.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 66 SGSKDFVCTECGKAFGTLRNLEVHLAVHTGNR 97
S K F C C K F +L+ HL +HT +
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 28.4 bits (63), Expect = 0.24
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 41 RPFSCE--KCDKSFYTQQNLVQHEKTHS 66
RP+SC+ CDK+F +L++H+K+H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 27.7 bits (61), Expect = 0.47
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 96 NRPFIC--RVCGKSFVRKAEVKDHERTHT 122
+RP+ C C K+FVR ++ H+++H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 26.1 bits (57), Expect = 1.6
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 201 ERPYQCDI--CNATFIYPEHFKKHRRIHT 227
+RPY CD C+ F+ +H++ H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 30.8 bits (69), Expect = 0.27
Identities = 12/128 (9%), Positives = 35/128 (27%), Gaps = 3/128 (2%)
Query: 5 LVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKT 64
++ ++C + + + + C + ++ +
Sbjct: 45 IIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQA 104
Query: 65 HSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGE 124
H C +C + F ++ +H+ R C C S + + + H++
Sbjct: 105 HCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAFE-DKEIHDQNCP-L 161
Query: 125 KPYQCEFC 132
Sbjct: 162 ALEHHHHH 169
Score = 27.7 bits (61), Expect = 3.2
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 73 CTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFC 132
E LR+LE H C C + F + + H + C+ C
Sbjct: 86 PNEGCLHKMELRHLE-DHQAHCEFALMDCPQCQRPFQKF-HINIHILKDCPRRQVSCDNC 143
Query: 133 GAQFRFK 139
A F+
Sbjct: 144 AASMAFE 150
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.8 bits (69), Expect = 0.29
Identities = 10/49 (20%), Positives = 13/49 (26%), Gaps = 16/49 (32%)
Query: 85 NLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCG 133
NL + L C C V+ G+ C CG
Sbjct: 17 NLNIVL---------TCPECKV--YPPKIVERFSE---GD--VVCALCG 49
Score = 30.0 bits (67), Expect = 0.60
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 7/33 (21%)
Query: 45 CEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECG 77
C +C +V E+ G D VC CG
Sbjct: 24 CPECKVY---PPKIV--ERFSEG--DVVCALCG 49
Score = 29.2 bits (65), Expect = 1.1
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 12/52 (23%)
Query: 72 VCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDH--E-RT 120
C EC + G+ +C +CG V ++ D E RT
Sbjct: 23 TCPECKVYPPKIVERFSE-----GDV--VCALCG--LVLSDKLVDTRSEWRT 65
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 27.9 bits (61), Expect = 0.38
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 173 KRYPCTSCPKAFKRRRLLDYHIKAAH 198
+ Y C C K+F RL+ HIK H
Sbjct: 8 RSYSCPVCEKSFSEDRLIKSHIKTNH 33
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 29.5 bits (65), Expect = 0.38
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 39 RKRPFSCEKCDK-SFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNR 97
K SC C T + L +H + + F C CGK +L ++ H+ + +
Sbjct: 31 DKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSL 89
Query: 98 PF 99
P
Sbjct: 90 PS 91
Score = 27.9 bits (61), Expect = 1.4
Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 69 KDFVCTECGKA-FGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKP 126
C C T+ L+ H+ F C CGK A +K H + P
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
Score = 26.4 bits (57), Expect = 4.8
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 175 YPCTSCPKAFKRRRLLDYHIKAAHT 199
+ C C K + + YH+ A H
Sbjct: 63 FTCHHCGKQLRSLAGMKYHVMANHN 87
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 27.4 bits (60), Expect = 0.53
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTH 121
+P++C CGK FV+ +++ +H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.6 bits (60), Expect = 0.59
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 40 KRPFSCEKCDKSFYTQQNLVQHEKTHSG 67
++ + C KC +F +++L+QH+KTH+
Sbjct: 10 RKRYECSKCQATFNLRKHLIQHQKTHAA 37
Score = 27.6 bits (60), Expect = 0.67
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 196 AAHTGERPYQCDICNATFIYPEHFKKHRRIHTGE 229
+ HT +R Y+C C ATF +H +H++ H +
Sbjct: 6 SGHTRKR-YECSKCQATFNLRKHLIQHQKTHAAK 38
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 29.8 bits (66), Expect = 0.73
Identities = 5/33 (15%), Positives = 10/33 (30%)
Query: 198 HTGERPYQCDICNATFIYPEHFKKHRRIHTGEK 230
GE+ Q + PE + + +
Sbjct: 203 ARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 29.0 bits (64), Expect = 1.5
Identities = 3/53 (5%), Positives = 14/53 (26%)
Query: 73 CTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEK 125
+ K ++ +H + G + + +++ +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 27.1 bits (59), Expect = 5.5
Identities = 5/43 (11%), Positives = 11/43 (25%), Gaps = 7/43 (16%)
Query: 36 HTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGK 78
++ EK ++ ++L GK
Sbjct: 202 LARGEKRLQREKSEQVLDNPEDLRGPIH-------LSVLRQGK 237
Score = 26.7 bits (58), Expect = 7.1
Identities = 3/37 (8%), Positives = 12/37 (32%)
Query: 4 HLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
H G + + + ++ + + + R+
Sbjct: 199 HRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 30.2 bits (67), Expect = 0.78
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 159 SNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAH 198
S+ QS K N Y C C F L H+++ H
Sbjct: 101 SDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDH 140
Score = 29.4 bits (65), Expect = 1.7
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 68 SKDFVCTECGKAFGTLRNLEVHLA 91
+VC C F T+ L HL
Sbjct: 114 PSSYVCNVCNARFSTMSALSEHLR 137
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.91
Identities = 22/140 (15%), Positives = 39/140 (27%), Gaps = 57/140 (40%)
Query: 88 VHLAVHTGNRPFICRVCG--------KSFVRKAEV---KDHERT-HTGEK---------- 125
V +++ G + + V G +RKA+ D R + K
Sbjct: 366 VEISLVNGAKNLV--VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV 423
Query: 126 --PY-------------------QCEFCGAQFR------FKGS---SGTESIDKLLL-CF 154
P+ F + F GS + SI + ++ C
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 155 LSQRSN--LQSHKRATHFND 172
+ + +ATH D
Sbjct: 484 IRLPVKWETTTQFKATHILD 503
Score = 29.6 bits (66), Expect = 1.6
Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 27/116 (23%)
Query: 131 FCGAQFRFKGSSGTESIDKLLLC-FLSQRSNLQS---HKRATHFNDKRYPCTSCPKAFKR 186
+ + + + L L F + L+ H A + K
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEF--ENCYLEGNDIHALAAKL-----LQENDTTLVKT 119
Query: 187 RRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCEVRL-AVF 241
+ L+ +I A +RP+ +A F R + G +L A+F
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALF---------RAVGEG------NAQLVAIF 160
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 26.6 bits (59), Expect = 1.2
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 41 RPFSCEKCDKSFYTQQNLVQHEKTH 65
R ++C C + F + Q L H H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 26.7 bits (58), Expect = 1.4
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 171 NDKRYPCTSCPKAFKRRRLLDYHIKAAHTGE 201
DK Y C C K +K R L YH +H E
Sbjct: 4 RDKPYACDICGKRYKNRPGLSYHYAHSHLAE 34
Score = 24.4 bits (52), Expect = 8.9
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 38 DRKRPFSCEKCDKSFYTQQNLVQHEKTHS 66
DR +P++C+ C K + + L H HS
Sbjct: 3 DRDKPYACDICGKRYKNRPGLSYH-YAHS 30
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 26.0 bits (57), Expect = 1.5
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 43 FSCEKCDKSFYTQQNLVQHEKTHSGSKD 70
F+C +C K F +L +H H +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 25.6 bits (56), Expect = 2.5
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 99 FICRVCGKSFVRKAEVKDHERTHTGEKP 126
F C C K F+R + H H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 24.1 bits (52), Expect = 7.5
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 204 YQCDICNATFIYPEHFKKHRRIHTGEKP 231
+ C C F+ +H KH +H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 26.0 bits (57), Expect = 1.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 173 KRYPCTSCPKAFKRRRLLDYHIKAAHTG 200
K Y C C +AF RR LL H + H+G
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 24.8 bits (54), Expect = 3.8
Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERT-HTG 123
+ + C +C ++F R+ + H + H+G
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 24.0 bits (52), Expect = 8.8
Identities = 9/29 (31%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 41 RPFSCEKCDKSFYTQQNLVQH-EKTHSGS 68
+ ++C C+++F + L++H +K HSG+
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN 29
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 26.0 bits (57), Expect = 1.8
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 99 FICRVCGKSFVRKAEVKDHERTHTGEK 125
F C C K F+R + H H +K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 25.6 bits (56), Expect = 1.9
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 43 FSCEKCDKSFYTQQNLVQHEKTHSGSK 69
F+C +C K F +L H H K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 24.1 bits (52), Expect = 7.4
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 204 YQCDICNATFIYPEHFKKHRRIHTGEK 230
+ C C F+ +H H +H +K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.9 bits (56), Expect = 1.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 97 RPFICRVCGKSFVRKAEVKDHERTHTGE 124
+ +C +CGK F K +K H+ HT +
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 25.6 bits (55), Expect = 2.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 7 SHTGARPYECKTCKKTFVSKYTYKAHLVTHTD 38
S + + + C C K F SK T K+H + HT
Sbjct: 3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTA 34
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 28.0 bits (61), Expect = 1.9
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 4/84 (4%)
Query: 12 RPYECKTCKKTFVSKYTYKAHLVT--HTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSK 69
+CK C +S+ AH + H ++ R + + + S +
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGE 90
Query: 70 D--FVCTECGKAFGTLRNLEVHLA 91
D C C F + E H
Sbjct: 91 DRSKCCPVCNMTFSSPVVAESHYI 114
>2jqv_A AT3G28950, AIG2 protein-like; structural genomics, protein
structure initiative, center for eukaryotic structural
genomics, CESG; NMR {Arabidopsis thaliana}
Length = 165
Score = 27.6 bits (61), Expect = 3.2
Identities = 6/49 (12%), Positives = 12/49 (24%), Gaps = 10/49 (20%)
Query: 79 AFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPY 127
+G++ V + A + + R PY
Sbjct: 13 VYGSILEPAVAAVI-LDRTADT---------VPAVLHGYHRYKLKGLPY 51
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 27.2 bits (59), Expect = 3.3
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 13/71 (18%)
Query: 73 CTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFC 132
C CG+ G L G+ +C C K+ K V+ + + C+ C
Sbjct: 58 CILCGEQLGML-----------GSASVVCEDCKKNVCTKCGVE--TSNNRPHPVWLCKIC 104
Query: 133 GAQFRFKGSSG 143
Q SG
Sbjct: 105 LEQREVWKRSG 115
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 27.0 bits (59), Expect = 4.1
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 43 FSCEKCDKSFYTQQNLVQHEKT 64
C C + F NL H ++
Sbjct: 51 HRCLACARYFIDSTNLKTHFRS 72
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.8 bits (53), Expect = 4.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 7 SHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRK 40
S + +P++C C+ SK KAH+ H+ K
Sbjct: 3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 27.4 bits (60), Expect = 4.7
Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 14/57 (24%)
Query: 84 RNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGA-QFRFK 139
+ ++ +C +CG H GE +C C + F
Sbjct: 157 LAAYNDIDAPDDDKFHLCPICG-------------YIHKGEDFEKCPICFRPKDTFT 200
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding
protein, C2H2 type zinc-finger, structural genomics;
NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Length = 79
Score = 26.0 bits (57), Expect = 5.1
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 43 FSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAF 80
F+C C +S + + +H + C +CGK F
Sbjct: 11 FTCNACGESV-KKIQVEKHVSNCRNCECLSCIDCGKDF 47
Score = 26.0 bits (57), Expect = 5.2
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 71 FVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQ 128
F C CG++ +E H++ C CGK F + K H + + + Y
Sbjct: 11 FTCNACGESV-KKIQVEKHVSNCRNCECLSCIDCGKDFWGD-DYKSHVKCISEGQKYG 66
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 5.1
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 2 EDHLVSHTGARPYE 15
E ++ H+G R E
Sbjct: 895 ETSILEHSGIRLIE 908
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 27.4 bits (61), Expect = 5.1
Identities = 13/54 (24%), Positives = 15/54 (27%), Gaps = 11/54 (20%)
Query: 86 LEVHLAVHTGN-RPFICRVCGKSFVRKAEVKDHERTHTG-----EKPYQCEFCG 133
E+H GN C C +VR V TG K C
Sbjct: 130 AELH-----GNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACR 178
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 27.3 bits (61), Expect = 6.1
Identities = 14/58 (24%), Positives = 17/58 (29%), Gaps = 11/58 (18%)
Query: 86 LEVHLAVHTGN-RPFICRVCGKSFVRKAEVKDHERTHTG-----EKPYQCEFCGAQFR 137
E+H GN C C +VR V TG K C + R
Sbjct: 130 AELH-----GNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELR 182
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger;
NMR {Homo sapiens} SCOP: g.41.3.1
Length = 62
Score = 25.2 bits (55), Expect = 6.7
Identities = 10/48 (20%), Positives = 14/48 (29%), Gaps = 3/48 (6%)
Query: 58 LVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCG 105
+ E+ + F C C F LE + F C C
Sbjct: 2 IETDERDSTNRASFKCPVCSSTFTD---LEANQLFDPMTGTFRCTFCH 46
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain
associated with ring and TRAF domains protein 1,
malignant 62; NMR {Homo sapiens}
Length = 76
Score = 25.3 bits (55), Expect = 8.1
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 104 CGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFRFK 139
C R+ ++ H + ++ +CEFCG F +
Sbjct: 23 CPMKLSRR-DLPAHLQHDCPKRRLKCEFCGCDFSGE 57
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 24.3 bits (52), Expect = 9.3
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 201 ERPYQCDI--CNATFIYPEHFKKHRRIHT 227
++P+ C C F +H H+ H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.137 0.445
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,088,784
Number of extensions: 227283
Number of successful extensions: 3051
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2179
Number of HSP's successfully gapped: 1276
Length of query: 275
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 183
Effective length of database: 4,133,061
Effective search space: 756350163
Effective search space used: 756350163
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.0 bits)