BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12835
(291 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GNI|A Chain A, Structure Of Strad And Mo25
pdb|2WTK|A Chain A, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|D Chain D, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 341
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/148 (75%), Positives = 134/148 (90%)
Query: 6 TPTELLTRHKILCAEFLELNYDKVFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVM 65
T +LLTRHK+L AEFLE +YD+ FS Y++LL+SENYVT+RQSLKLLGELLLDRHNFT+M
Sbjct: 187 TFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIM 246
Query: 66 TRYISNPYNLKLMMNMLKEKSRNIQFEAFHVFKVFVANPNKPKPILDILLRNQDLLVEFL 125
T+YIS P NLKLMMN+L++KSRNIQFEAFHVFKVFVANPNK +PILDILL+NQ L+EFL
Sbjct: 247 TKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFL 306
Query: 126 TRFHTDRSEDEQFNDEKAYLIKQIKELK 153
++F DR+EDEQFNDEK YL+KQI++LK
Sbjct: 307 SKFQNDRTEDEQFNDEKTYLVKQIRDLK 334
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 189 MPL-FGKSQKSPAEVVKALKDAVNALXXXXXXXXXXXXXAQEDVSKNLLLIKNMLYGTAD 247
MP FGKS KSPA++VK LK+++ A+ A E+VSKNL+ +K +LYGT +
Sbjct: 1 MPFPFGKSHKSPADIVKNLKESM-AVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNE 59
Query: 248 AEPQTDIIVAQLAQEXXXXXXXXXXXXXXXKIDFEGKKDVAQ 289
EPQT+ VAQLAQE IDFEGKKDVAQ
Sbjct: 60 KEPQTE-AVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQ 100
>pdb|3ZHP|A Chain A, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|B Chain B, Human Mst3 (stk24) In Complex With Mo25beta
Length = 340
Score = 218 bits (555), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 103/151 (68%), Positives = 129/151 (85%)
Query: 6 TPTELLTRHKILCAEFLELNYDKVFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVM 65
T +LLTRHK+L A+FLE NYD +F Y++LL SENYVT+RQSLKLLGEL+LDRHNF +M
Sbjct: 189 TFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFAIM 248
Query: 66 TRYISNPYNLKLMMNMLKEKSRNIQFEAFHVFKVFVANPNKPKPILDILLRNQDLLVEFL 125
T+YIS P NLKLMMN+L++KS NIQFEAFHVFKVFVA+P+K +PI++ILL+NQ L+EFL
Sbjct: 249 TKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFL 308
Query: 126 TRFHTDRSEDEQFNDEKAYLIKQIKELKPIA 156
+ F +R++DEQF DEK YLIKQI++LK A
Sbjct: 309 SSFQKERTDDEQFADEKNYLIKQIRDLKKTA 339
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 188 IMPLFGKSQKSPAEVVKALKDAVNALXXXXXXXXXXXXXAQEDVSKNLLLIKNMLYGTAD 247
++PLF KS K+PAE+VK LKD + L A E+VSK+L +K +L GT +
Sbjct: 6 MLPLFSKSHKNPAEIVKILKDNLAIL----EKQDKKTDKASEEVSKSLQAMKEILCGTNE 61
Query: 248 AEPQTDIIVAQLAQEXXXXXXXXXXXXXXXKIDFEGKKDVAQ 289
EP T+ VAQLAQE IDFEGKKDV Q
Sbjct: 62 KEPPTE-AVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQ 102
>pdb|1UPK|A Chain A, Crystal Structure Of Mo25 In Complex With A C-Terminal
Peptide Of Strad
pdb|1UPL|A Chain A, Crystal Structure Of Mo25 Alpha
pdb|1UPL|B Chain B, Crystal Structure Of Mo25 Alpha
Length = 341
Score = 197 bits (502), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 109/148 (73%), Positives = 131/148 (88%)
Query: 6 TPTELLTRHKILCAEFLELNYDKVFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVM 65
T +LLTRHK+L AEFLE +YD+ FS Y++LL+SENYVT+RQSLKLLGELLLDRHNFT+
Sbjct: 187 TFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIX 246
Query: 66 TRYISNPYNLKLMMNMLKEKSRNIQFEAFHVFKVFVANPNKPKPILDILLRNQDLLVEFL 125
T+YIS P NLKL N+L++KSRNIQFEAFHVFKVFVANPNK +PILDILL+NQ L+EFL
Sbjct: 247 TKYISKPENLKLXXNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFL 306
Query: 126 TRFHTDRSEDEQFNDEKAYLIKQIKELK 153
++F DR+EDEQFNDEK YL+KQI++LK
Sbjct: 307 SKFQNDRTEDEQFNDEKTYLVKQIRDLK 334
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 192 FGKSQKSPAEVVKALKDAVNALXXXXXXXXXXXXXAQEDVSKNLLLIKNMLYGTADAEPQ 251
FGKS KSPA++VK LK++ A+ A E+VSKNL+ K +LYGT + EPQ
Sbjct: 5 FGKSHKSPADIVKNLKESX-AVLEKQDISDKKAEKATEEVSKNLVAXKEILYGTNEKEPQ 63
Query: 252 TDIIVAQLAQEXXXXXXXXXXXXXXXKIDFEGKKDVAQ 289
T+ VAQLAQE IDFEGKKDVAQ
Sbjct: 64 TE-AVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQ 100
>pdb|3QZ3|A Chain A, The Crystal Structure Of Ferritin From Vibrio Cholerae O1
Biovar El Tor Str. N16961
pdb|3QZ3|B Chain B, The Crystal Structure Of Ferritin From Vibrio Cholerae O1
Biovar El Tor Str. N16961
pdb|3QZ3|C Chain C, The Crystal Structure Of Ferritin From Vibrio Cholerae O1
Biovar El Tor Str. N16961
Length = 184
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 18 CAEFLELNYDKVFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYN--- 74
AEFL + + H QRL YV+ +L +LG + RH+F + Y
Sbjct: 48 AAEFLRAHAVEEXQHXQRLFT---YVSETGALPILGAIAAPRHDFASLGEVFRETYQHEQ 104
Query: 75 -LKLMMNMLKEKSRNIQ-FEAFHVFKVFVANPNKPKPILDILLRNQDLLVE 123
+ +N L + Q + F+ + +VA ++ + + +L +L+ E
Sbjct: 105 KITQQINKLAHVAFTSQDYSTFNFLQWYVAEQHEEEKLFKGILDKLELVGE 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,997,995
Number of Sequences: 62578
Number of extensions: 250560
Number of successful extensions: 533
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 520
Number of HSP's gapped (non-prelim): 10
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)