Query psy12835
Match_columns 291
No_of_seqs 219 out of 364
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 21:00:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12835.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12835hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08569 Mo25: Mo25-like; Int 100.0 6.2E-64 1.3E-68 478.2 8.8 152 3-154 184-335 (335)
2 KOG1566|consensus 100.0 3.1E-59 6.8E-64 439.9 10.9 155 3-157 186-341 (342)
3 PF08569 Mo25: Mo25-like; Int 99.9 4.5E-27 9.7E-32 225.0 5.4 98 189-290 1-99 (335)
4 KOG1566|consensus 99.9 1.4E-26 2.9E-31 219.2 7.1 101 189-290 1-102 (342)
5 PF08064 UME: UME (NUC010) dom 72.2 3.7 8.1E-05 33.4 2.9 78 19-104 2-85 (107)
6 PF12717 Cnd1: non-SMC mitotic 60.0 10 0.00023 32.9 3.4 78 5-98 10-88 (178)
7 cd00020 ARM Armadillo/beta-cat 54.4 9 0.00019 29.1 1.9 64 28-94 49-112 (120)
8 cd00020 ARM Armadillo/beta-cat 53.8 20 0.00043 27.2 3.7 90 30-126 9-101 (120)
9 PF13646 HEAT_2: HEAT repeats; 50.5 12 0.00027 27.5 2.0 51 36-100 8-58 (88)
10 PF02269 TFIID-18kDa: Transcri 48.3 21 0.00046 28.6 3.2 35 236-272 5-40 (93)
11 PTZ00464 SNF-7-like protein; P 46.8 33 0.00071 31.6 4.6 44 189-239 1-49 (211)
12 KOG3902|consensus 44.6 31 0.00067 33.9 4.2 46 228-275 20-66 (352)
13 cd07978 TAF13 The TATA Binding 42.5 34 0.00074 27.5 3.6 29 235-265 5-34 (92)
14 KOG0946|consensus 39.4 38 0.00083 37.3 4.3 65 29-94 123-187 (970)
15 KOG1655|consensus 38.9 49 0.0011 30.7 4.4 68 189-265 1-70 (218)
16 KOG3821|consensus 38.5 40 0.00086 35.5 4.1 108 3-121 81-199 (563)
17 PF13646 HEAT_2: HEAT repeats; 37.4 23 0.00049 26.1 1.7 31 25-55 28-58 (88)
18 smart00802 UME Domain in UVSB 36.1 32 0.0007 28.3 2.5 77 19-103 2-84 (107)
19 PF04826 Arm_2: Armadillo-like 29.7 43 0.00093 31.5 2.6 57 32-92 138-195 (254)
20 PTZ00446 vacuolar sorting prot 28.0 1.2E+02 0.0025 27.8 4.9 27 189-215 1-41 (191)
21 cd03568 VHS_STAM VHS domain fa 27.8 1.3E+02 0.0028 25.9 5.0 54 30-85 39-92 (144)
22 KOG3230|consensus 27.3 61 0.0013 30.2 3.0 23 189-212 1-23 (224)
23 PF08167 RIX1: rRNA processing 26.3 4.2E+02 0.0092 22.8 9.1 72 9-84 6-78 (165)
24 PF12552 DUF3741: Protein of u 25.5 67 0.0014 23.0 2.3 19 109-127 25-43 (46)
25 PF02985 HEAT: HEAT repeat; I 25.4 92 0.002 19.4 2.8 26 31-56 3-28 (31)
26 KOG0166|consensus 24.8 79 0.0017 33.1 3.6 220 32-288 156-385 (514)
27 PF07304 SRA1: Steroid recepto 24.0 1.4E+02 0.0031 26.0 4.7 44 224-268 63-106 (157)
28 PF13513 HEAT_EZ: HEAT-like re 20.1 1.1E+02 0.0023 21.0 2.5 46 44-93 3-48 (55)
No 1
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=100.00 E-value=6.2e-64 Score=478.19 Aligned_cols=152 Identities=72% Similarity=1.106 Sum_probs=139.3
Q ss_pred CCCcHHHHHhcChHHHHHHHHhcHHHHHHHHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHh
Q psy12835 3 LSPTPTELLTRHKILCAEFLELNYDKVFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNML 82 (291)
Q Consensus 3 ~~~Tfkellt~hk~lvaefl~~Nyd~Ff~~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL 82 (291)
||+||+|+||+||++|++||.+|||+||++|++||+|+||||||||||||||||+||+|++||++||+||+|||+||+||
T Consensus 184 af~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL 263 (335)
T PF08569_consen 184 AFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLL 263 (335)
T ss_dssp HHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceeecceeeeeeeeCCCCChhHHHHHHHhHHHHHHHHhhcCCCCCcccccHHHHHHHHHHHhhcCC
Q psy12835 83 KEKSRNIQFEAFHVFKVFVANPNKPKPILDILLRNQDLLVEFLTRFHTDRSEDEQFNDEKAYLIKQIKELKP 154 (291)
Q Consensus 83 ~d~sk~Iq~eAFhvFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~~~D~qF~~EK~~lI~~I~~L~~ 154 (291)
+|+||+||+|||||||||||||+||+||++||.+||+|||+||.+|++|+++|+||.|||++||++|++|||
T Consensus 264 ~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~~~~~D~qf~~EK~~li~~i~~L~~ 335 (335)
T PF08569_consen 264 RDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKDFHTDRTDDEQFEDEKAYLIKQIESLPP 335 (335)
T ss_dssp T-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTTT--S-CHHHHHHHHHHHHHHT---
T ss_pred cCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCCCCCccccHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999988999999999999999999986
No 2
>KOG1566|consensus
Probab=100.00 E-value=3.1e-59 Score=439.88 Aligned_cols=155 Identities=68% Similarity=1.024 Sum_probs=152.0
Q ss_pred CCCcHHHHHhcChHHHHHHHHhcHHHHHHH-HHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHH
Q psy12835 3 LSPTPTELLTRHKILCAEFLELNYDKVFSH-YQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNM 81 (291)
Q Consensus 3 ~~~Tfkellt~hk~lvaefl~~Nyd~Ff~~-~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~L 81 (291)
|++|||++||+||.+|+|||.+||||||.. |++|++|+||||||||+||||++|+||+|+.+|++||++|+|||+||+|
T Consensus 186 A~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~l 265 (342)
T KOG1566|consen 186 AFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNL 265 (342)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHH
Confidence 789999999999999999999999999999 6689999999999999999999999999999999999999999999999
Q ss_pred hccccccceeecceeeeeeeeCCCCChhHHHHHHHhHHHHHHHHhhcCCCCCcccccHHHHHHHHHHHhhcCCCCC
Q psy12835 82 LKEKSRNIQFEAFHVFKVFVANPNKPKPILDILLRNQDLLVEFLTRFHTDRSEDEQFNDEKAYLIKQIKELKPIAG 157 (291)
Q Consensus 82 L~d~sk~Iq~eAFhvFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~~~D~qF~~EK~~lI~~I~~L~~~~~ 157 (291)
|+|+|||||+|||||||+||||||||+||.+||.+||+||++|+.+|++|+++|+||.|||+++|++|+.|+++++
T Consensus 266 lrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KLl~~l~~f~~d~~~DeqF~dEk~~~i~eI~~l~~~~~ 341 (342)
T KOG1566|consen 266 LRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKLLELLHDFHTDRTEDEQFLDEKAYLIKEIRQLKRLDS 341 (342)
T ss_pred hhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHhcccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998765
No 3
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=99.93 E-value=4.5e-27 Score=225.03 Aligned_cols=98 Identities=53% Similarity=0.831 Sum_probs=77.0
Q ss_pred cc-ccCCCCCChHHHHHHHHHHHHhhhcCCCCCCccchhhhhHHHHHHHHhhhhhcCCCCCCCChHHHHHHHHHHHHhhC
Q psy12835 189 MP-LFGKSQKSPAEVVKALKDAVNALEKGDKKGEKGDKKAQEDVSKNLLLIKNMLYGTADAEPQTDIIVAQLAQELYNSN 267 (291)
Q Consensus 189 M~-lFkk~~KtP~elVr~lre~L~~L~~~~~~~~k~~~Ka~EEvsK~L~~mK~iL~G~~E~EP~~e~~v~qLa~Ei~~~D 267 (291)
|+ |||++||||+|+||+++|+|.+|+. +.+++++|++|||+|+|++||.||||++|+||++|+ |+|||+|+|++|
T Consensus 1 M~FlF~k~~KtP~ElVr~l~e~L~~L~~---~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~-v~qLa~Ei~~~d 76 (335)
T PF08569_consen 1 MSFLFKKKPKTPAELVRSLREALEKLDS---KSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQ-VAQLAQEIYRSD 76 (335)
T ss_dssp -----------HHHHHHHHHHHHHHHHS---S-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHH-HHHHHHHHHHHT
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHhcc---ccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHH-HHHHHHHHHHhC
Confidence 77 8999999999999999999999971 345688999999999999999999999999999998 899999999999
Q ss_pred hHHHHHhhcCCCCCCcccccccc
Q psy12835 268 LLLLLIQNLNKIDFEGKKDVAQN 290 (291)
Q Consensus 268 lL~lLi~~L~~LdFEaRKDv~q~ 290 (291)
+++.||.||++||||+|||++|+
T Consensus 77 ll~~Li~~L~~L~fEsrKdv~~i 99 (335)
T PF08569_consen 77 LLYLLIRNLPKLDFESRKDVAQI 99 (335)
T ss_dssp HHHHHHHTGGGS-HHHHHHHHHH
T ss_pred HHHHHHHHhhhCCCcccccHHHH
Confidence 99999999999999999999985
No 4
>KOG1566|consensus
Probab=99.93 E-value=1.4e-26 Score=219.17 Aligned_cols=101 Identities=49% Similarity=0.702 Sum_probs=95.7
Q ss_pred cc-ccCCCCCChHHHHHHHHHHHHhhhcCCCCCCccchhhhhHHHHHHHHhhhhhcCCCCCCCChHHHHHHHHHHHHhhC
Q psy12835 189 MP-LFGKSQKSPAEVVKALKDAVNALEKGDKKGEKGDKKAQEDVSKNLLLIKNMLYGTADAEPQTDIIVAQLAQELYNSN 267 (291)
Q Consensus 189 M~-lFkk~~KtP~elVr~lre~L~~L~~~~~~~~k~~~Ka~EEvsK~L~~mK~iL~G~~E~EP~~e~~v~qLa~Ei~~~D 267 (291)
|+ |||++||||+|+||.+||+|..++..+...+++++|++|||+|++..||.||||++|.||.+|+ |+|||||+|++|
T Consensus 1 M~~~f~k~~ktP~d~Vr~~rd~l~~~~~~~~l~~~~~~k~~eevsk~l~~~k~il~Gn~e~eP~~e~-~~qLtqef~~~~ 79 (342)
T KOG1566|consen 1 MFFLFKKSPKTPADVVRRTRDKLKFLDKVRDLLDHKREKAVEEVSKNLDMLKSILYGNDEAEPFAEA-VAQLTQEFYNAD 79 (342)
T ss_pred CCCccCCCCCCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhhhHHheeCCCCCCCChHH-HHHHHHHHHhCC
Confidence 66 7999999999999999999999998754556789999999999999999999999999999998 999999999999
Q ss_pred hHHHHHhhcCCCCCCcccccccc
Q psy12835 268 LLLLLIQNLNKIDFEGKKDVAQN 290 (291)
Q Consensus 268 lL~lLi~~L~~LdFEaRKDv~q~ 290 (291)
++++||++||+|+||+|||++|+
T Consensus 80 ~l~~lI~~l~~l~fE~rkD~~~i 102 (342)
T KOG1566|consen 80 VLSLLIQHLPKLEFESRKDVLQI 102 (342)
T ss_pred chHHHHHhhhcccchhhhHHHHH
Confidence 99999999999999999999986
No 5
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=72.19 E-value=3.7 Score=33.40 Aligned_cols=78 Identities=18% Similarity=0.363 Sum_probs=54.3
Q ss_pred HHHHHhcHHHHHHHHHHhh-c---CCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhcc--ccccceee
Q psy12835 19 AEFLELNYDKVFSHYQRLL-N---SENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKE--KSRNIQFE 92 (291)
Q Consensus 19 aefl~~Nyd~Ff~~~~~Ll-~---s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d--~sk~Iq~e 92 (291)
++||..|+=-.+..|+.-+ . +..|..|+++++=|++++. ....||+.- -=+ ||..|++ ..+.++.+
T Consensus 2 ~~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~------~~~~~i~~~-~pQ-I~a~L~sal~~~~l~~~ 73 (107)
T PF08064_consen 2 ADFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIK------LGGSHISSA-RPQ-IMACLQSALEIPELREE 73 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHH------HhHHHHHHH-HHH-HHHHHHHHhCChhhHHH
Confidence 5789998877777776544 3 6999999999999999995 233344332 123 4444433 44578999
Q ss_pred cceeeeeeeeCC
Q psy12835 93 AFHVFKVFVANP 104 (291)
Q Consensus 93 AFhvFKvFVANP 104 (291)
|+.++..||-+=
T Consensus 74 al~~W~~fi~~L 85 (107)
T PF08064_consen 74 ALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHHC
Confidence 999999998653
No 6
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=60.03 E-value=10 Score=32.92 Aligned_cols=78 Identities=21% Similarity=0.306 Sum_probs=56.6
Q ss_pred CcHHHHHhcChHHHHHHHHhcHHHHHHHHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhH-HHHHHHhc
Q psy12835 5 PTPTELLTRHKILCAEFLELNYDKVFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNL-KLMMNMLK 83 (291)
Q Consensus 5 ~Tfkellt~hk~lvaefl~~Nyd~Ff~~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NL-kliM~LL~ 83 (291)
.+.-||..+|+.++..| .......|.+++-..|++++..|..|++. -|+.-...+ -.++.+|.
T Consensus 10 ~~l~DL~~r~~~~ve~~--------~~~l~~~L~D~~~~VR~~al~~Ls~Li~~--------d~ik~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 10 IALGDLCIRYPNLVEPY--------LPNLYKCLRDEDPLVRKTALLVLSHLILE--------DMIKVKGQLFSRILKLLV 73 (178)
T ss_pred HHHHHHHHhCcHHHHhH--------HHHHHHHHCCCCHHHHHHHHHHHHHHHHc--------CceeehhhhhHHHHHHHc
Confidence 34556777777666544 34455778889999999999999999865 355555665 77788889
Q ss_pred cccccceeecceeee
Q psy12835 84 EKSRNIQFEAFHVFK 98 (291)
Q Consensus 84 d~sk~Iq~eAFhvFK 98 (291)
|++..|+--|=..|.
T Consensus 74 D~~~~Ir~~A~~~~~ 88 (178)
T PF12717_consen 74 DENPEIRSLARSFFS 88 (178)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999888766655444
No 7
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=54.36 E-value=9 Score=29.15 Aligned_cols=64 Identities=19% Similarity=0.134 Sum_probs=46.0
Q ss_pred HHHHHHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhccccccceeecc
Q psy12835 28 KVFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKEKSRNIQFEAF 94 (291)
Q Consensus 28 ~Ff~~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d~sk~Iq~eAF 94 (291)
.++..+-++|.++|+-.++.++..|+.|..+.. .....+ -+..-+..+..+|.+.+..++-.|.
T Consensus 49 ~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~-~~~g~l~~l~~~l~~~~~~~~~~a~ 112 (120)
T cd00020 49 GGLPALVQLLKSEDEEVVKAALWALRNLAAGPE--DNKLIV-LEAGGVPKLVNLLDSSNEDIQKNAT 112 (120)
T ss_pred CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH--HHHHHH-HHCCChHHHHHHHhcCCHHHHHHHH
Confidence 345566678889999999999999999987643 333333 3445788888898888666554443
No 8
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=53.79 E-value=20 Score=27.22 Aligned_cols=90 Identities=20% Similarity=0.262 Sum_probs=64.0
Q ss_pred HHHHHHhhcCCCcchhhhhHHHHHHHhcc-cCcHHHHHHHhcChhhHHHHHHHhccccccceeecceeeeeeeeCCCCCh
Q psy12835 30 FSHYQRLLNSENYVTRRQSLKLLGELLLD-RHNFTVMTRYISNPYNLKLMMNMLKEKSRNIQFEAFHVFKVFVANPNKPK 108 (291)
Q Consensus 30 f~~~~~Ll~s~NYVtkRqSlKLL~ellld-r~N~~vm~~Yi~~~~NLkliM~LL~d~sk~Iq~eAFhvFKvFVANP~K~~ 108 (291)
+..+-.+|.+++.-.+..++..|+.+-.+ +.+...+ -+..-+..++.+|.++...++..|.-.+--+..++.
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~----~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~--- 81 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAV----VEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE--- 81 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHH----HHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH---
Confidence 34456677888888999999999999877 3333332 235889999999999999999999888888877653
Q ss_pred hHHHHHHHh--HHHHHHHHh
Q psy12835 109 PILDILLRN--QDLLVEFLT 126 (291)
Q Consensus 109 ~I~~IL~~N--r~kLl~fl~ 126 (291)
+...++.++ =..|++++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~ 101 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLD 101 (120)
T ss_pred HHHHHHHHCCChHHHHHHHh
Confidence 344444443 344444443
No 9
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=50.55 E-value=12 Score=27.54 Aligned_cols=51 Identities=18% Similarity=0.325 Sum_probs=40.5
Q ss_pred hhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhccccccceeecceeeeee
Q psy12835 36 LLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKEKSRNIQFEAFHVFKVF 100 (291)
Q Consensus 36 Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d~sk~Iq~eAFhvFKvF 100 (291)
|..+++.-.|+.++..|| .+.+++-+..+..+|+|++..++..|.....-+
T Consensus 8 l~~~~~~~vr~~a~~~L~--------------~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 8 LQNDPDPQVRAEAARALG--------------ELGDPEAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHTSSSHHHHHHHHHHHH--------------CCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HhcCCCHHHHHHHHHHHH--------------HcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 448899999999999999 334556788889999999999988887665543
No 10
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=48.34 E-value=21 Score=28.58 Aligned_cols=35 Identities=26% Similarity=0.519 Sum_probs=22.4
Q ss_pred HHhhhhhcCCCC-CCCChHHHHHHHHHHHHhhChHHHH
Q psy12835 236 LLIKNMLYGTAD-AEPQTDIIVAQLAQELYNSNLLLLL 272 (291)
Q Consensus 236 ~~mK~iL~G~~E-~EP~~e~~v~qLa~Ei~~~DlL~lL 272 (291)
.+++.+|||-|| .+|.+|. .+|..+|...-+..++
T Consensus 5 ~eI~~mMy~fGD~~~P~~eT--v~lvE~iv~~~i~~l~ 40 (93)
T PF02269_consen 5 KEIRQMMYGFGDVEEPLPET--VDLVEDIVREYIIELC 40 (93)
T ss_dssp CCCHHHHHCTTS-SS--HHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcHHH--HHHHHHHHHHHHHHHH
Confidence 357889999999 5899885 5666666655443333
No 11
>PTZ00464 SNF-7-like protein; Provisional
Probab=46.81 E-value=33 Score=31.60 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=29.0
Q ss_pred cc-ccCCC----CCChHHHHHHHHHHHHhhhcCCCCCCccchhhhhHHHHHHHHhh
Q psy12835 189 MP-LFGKS----QKSPAEVVKALKDAVNALEKGDKKGEKGDKKAQEDVSKNLLLIK 239 (291)
Q Consensus 189 M~-lFkk~----~KtP~elVr~lre~L~~L~~~~~~~~k~~~Ka~EEvsK~L~~mK 239 (291)
|+ |||++ +.|+.|-++.+++.+..|+. +-++..+|++++-..||
T Consensus 1 M~rlFG~~k~~p~~t~~d~~~~l~~r~~~l~k-------Ki~~ld~E~~~ak~~~k 49 (211)
T PTZ00464 1 MNRLFGKKNKTPKPTLEDASKRIGGRSEVVDA-------RINKIDAELMKLKEQIQ 49 (211)
T ss_pred CccccCCCCCCCCCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 55 89863 34788889999999888875 22334555555554444
No 12
>KOG3902|consensus
Probab=44.56 E-value=31 Score=33.90 Aligned_cols=46 Identities=17% Similarity=0.402 Sum_probs=40.1
Q ss_pred hhHHHHHHHHhhhhhcCCCC-CCCChHHHHHHHHHHHHhhChHHHHHhh
Q psy12835 228 QEDVSKNLLLIKNMLYGTAD-AEPQTDIIVAQLAQELYNSNLLLLLIQN 275 (291)
Q Consensus 228 ~EEvsK~L~~mK~iL~G~~E-~EP~~e~~v~qLa~Ei~~~DlL~lLi~~ 275 (291)
.+++.|++.++-.++|-.|| ++|.||. ++|+.++.+..+...|+++
T Consensus 20 tg~~~ky~veiQqmmf~sGei~~P~pet--t~Lved~V~gqvie~l~qa 66 (352)
T KOG3902|consen 20 TGDIKKYRVEIQQMMFQSGEIPDPLPET--TNLVEDNVRGQVIESLVQA 66 (352)
T ss_pred cccchhHHHHHHHHHHHhCCCCCCcHHH--HHHHHHHHHHHHHHHHHHH
Confidence 36789999999999998877 4799997 8999999999999988875
No 13
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=42.48 E-value=34 Score=27.51 Aligned_cols=29 Identities=24% Similarity=0.491 Sum_probs=20.2
Q ss_pred HHHhhhhhcCCCCC-CCChHHHHHHHHHHHHh
Q psy12835 235 LLLIKNMLYGTADA-EPQTDIIVAQLAQELYN 265 (291)
Q Consensus 235 L~~mK~iL~G~~E~-EP~~e~~v~qLa~Ei~~ 265 (291)
-.+++.+|||-||. +|.||. ..+..+|..
T Consensus 5 ~~ei~~mmy~~GD~~~P~~eT--v~llE~iv~ 34 (92)
T cd07978 5 TKEIRQMMYGFGDVQNPLPET--VDLLEDIVV 34 (92)
T ss_pred HHHHHHHHHHcCCCCCCCHHH--HHHHHHHHH
Confidence 35788899999986 899885 344444443
No 14
>KOG0946|consensus
Probab=39.44 E-value=38 Score=37.35 Aligned_cols=65 Identities=20% Similarity=0.339 Sum_probs=57.2
Q ss_pred HHHHHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhccccccceeecc
Q psy12835 29 VFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKEKSRNIQFEAF 94 (291)
Q Consensus 29 Ff~~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d~sk~Iq~eAF 94 (291)
++...-..++.-+|-.||.+++||..+|..|.= ++..--+.+|--.-.+|-+|+|..-.|+=||-
T Consensus 123 ~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~-e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~i 187 (970)
T KOG0946|consen 123 NITLLLQSLEEFDFHVRLYAIQLLSALLSCRPT-ELQDALLVSPMGISKLMDLLRDSREPIRNEAI 187 (970)
T ss_pred hHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCH-HHHHHHHHCchhHHHHHHHHhhhhhhhchhHH
Confidence 444555677889999999999999999999985 78888999999999999999999999988875
No 15
>KOG1655|consensus
Probab=38.87 E-value=49 Score=30.72 Aligned_cols=68 Identities=28% Similarity=0.397 Sum_probs=39.0
Q ss_pred cc-ccCC-CCCChHHHHHHHHHHHHhhhcCCCCCCccchhhhhHHHHHHHHhhhhhcCCCCCCCChHHHHHHHHHHHHh
Q psy12835 189 MP-LFGK-SQKSPAEVVKALKDAVNALEKGDKKGEKGDKKAQEDVSKNLLLIKNMLYGTADAEPQTDIIVAQLAQELYN 265 (291)
Q Consensus 189 M~-lFkk-~~KtP~elVr~lre~L~~L~~~~~~~~k~~~Ka~EEvsK~L~~mK~iL~G~~E~EP~~e~~v~qLa~Ei~~ 265 (291)
|. +||+ +||.|.-. |.|+...+++.+..-+++=.|...|++|+=.+|+.+=-| |..++ +-|=|--+.+
T Consensus 1 MnRiFG~~k~k~p~ps---L~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~g-----paq~~-~KqrAlrVLk 70 (218)
T KOG1655|consen 1 MNRIFGRGKPKEPPPS---LQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPG-----PAQNA-LKQRALRVLK 70 (218)
T ss_pred CcccccCCCCCCCChh---HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCC-----cchhH-HHHHHHHHHH
Confidence 45 8988 56777654 455555555432111223344567999999999988322 44454 4555544433
No 16
>KOG3821|consensus
Probab=38.46 E-value=40 Score=35.51 Aligned_cols=108 Identities=21% Similarity=0.241 Sum_probs=78.9
Q ss_pred CCCcHHHHHhcChHHHHHHHHhcHHHHHHHHHHhh-cCCCcchh----------hhhHHHHHHHhcccCcHHHHHHHhcC
Q psy12835 3 LSPTPTELLTRHKILCAEFLELNYDKVFSHYQRLL-NSENYVTR----------RQSLKLLGELLLDRHNFTVMTRYISN 71 (291)
Q Consensus 3 ~~~Tfkellt~hk~lvaefl~~Nyd~Ff~~~~~Ll-~s~NYVtk----------RqSlKLL~ellldr~N~~vm~~Yi~~ 71 (291)
|..+|+.++-.|......+|..|+..|=+.|..|+ .+.||.+- -|+..+++++.. .++..|+..
T Consensus 81 a~~~feqllq~~s~~Lr~~l~s~~r~F~E~f~ell~~ae~~l~~mF~~tYg~ly~qn~~~~~dlFt-----el~~y~~~~ 155 (563)
T KOG3821|consen 81 ARDMFEQLLQDSSSVLRFVLASNARKFDEFFLELLRNAENSLNAMFSKTYGSLYPQNAELFNDLFT-----ELKLYYVGS 155 (563)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH-----HHHHHhccc
Confidence 34578888888887888899999888888887777 45666543 477888888875 589999999
Q ss_pred hhhHHHHHHHhccccccceeecceeeeeeeeCCCCChhHHHHHHHhHHHH
Q psy12835 72 PYNLKLMMNMLKEKSRNIQFEAFHVFKVFVANPNKPKPILDILLRNQDLL 121 (291)
Q Consensus 72 ~~NLkliM~LL~d~sk~Iq~eAFhvFKvFVANP~K~~~I~~IL~~Nr~kL 121 (291)
..||.-+.+-+=+.- || -+|...+-=+.-+.+...-|.++++.|
T Consensus 156 ~~nlee~l~eff~~L----f~--~~f~~l~~~~~~~~Dy~eCl~~~~~~l 199 (563)
T KOG3821|consen 156 NVNLEETLNEFFARL----FE--VMFSQLNPQYDFTLDYLECLSKARREL 199 (563)
T ss_pred cCCHHHHHHHHHHHH----HH--HHHHHhcCCcCCcHHHHHHHHHHHHhc
Confidence 999999888765441 11 123443334477888898898888843
No 17
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=37.40 E-value=23 Score=26.08 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHhhcCCCcchhhhhHHHHHHH
Q psy12835 25 NYDKVFSHYQRLLNSENYVTRRQSLKLLGEL 55 (291)
Q Consensus 25 Nyd~Ff~~~~~Ll~s~NYVtkRqSlKLL~el 55 (291)
.-......+..++.++|..+|++++.-||.+
T Consensus 28 ~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 28 GDPEAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp THHHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3456777888899999999999999999987
No 18
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=36.12 E-value=32 Score=28.33 Aligned_cols=77 Identities=21% Similarity=0.430 Sum_probs=53.0
Q ss_pred HHHHHhcHHHHHHHHHH-hhcCC---CcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhcc--ccccceee
Q psy12835 19 AEFLELNYDKVFSHYQR-LLNSE---NYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKE--KSRNIQFE 92 (291)
Q Consensus 19 aefl~~Nyd~Ff~~~~~-Ll~s~---NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d--~sk~Iq~e 92 (291)
++||.+|+=-.+..|+. +.... .|.-|+++++=+++++. +|-.+|++.-- + ||..|++ ..+.+|.+
T Consensus 2 ~~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~------~~g~~i~~a~p-Q-I~acL~saL~~~eL~~~ 73 (107)
T smart00802 2 ADFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIK------LMGKHISSALP-Q-IMACLQSALEIPELRSL 73 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHH------HHHHHHHHHHH-H-HHHHHHHHhCchhHHHH
Confidence 57888888777777764 34444 78899999999999995 45556655322 3 3333332 23448999
Q ss_pred cceeeeeeeeC
Q psy12835 93 AFHVFKVFVAN 103 (291)
Q Consensus 93 AFhvFKvFVAN 103 (291)
||.++.+||-.
T Consensus 74 al~~W~~~i~~ 84 (107)
T smart00802 74 ALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHh
Confidence 99999998864
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=29.69 E-value=43 Score=31.47 Aligned_cols=57 Identities=25% Similarity=0.254 Sum_probs=39.4
Q ss_pred HHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhccc-cccceee
Q psy12835 32 HYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKEK-SRNIQFE 92 (291)
Q Consensus 32 ~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d~-sk~Iq~e 92 (291)
.+-.||.++|=-||-|+||+|.-|-.+ ..|++++=+..-+--+|.|+.+. ++.+-++
T Consensus 138 ~ll~LL~~G~~~~k~~vLk~L~nLS~n----p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~ 195 (254)
T PF04826_consen 138 DLLSLLSSGSEKTKVQVLKVLVNLSEN----PDMTRELLSAQVLSSFLSLFNSSESKENLLR 195 (254)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhccC----HHHHHHHHhccchhHHHHHHccCCccHHHHH
Confidence 345789999999999999999888766 44555555556666677776654 3443333
No 20
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=28.02 E-value=1.2e+02 Score=27.78 Aligned_cols=27 Identities=37% Similarity=0.550 Sum_probs=18.8
Q ss_pred cc-ccCCCCCC-------------hHHHHHHHHHHHHhhhc
Q psy12835 189 MP-LFGKSQKS-------------PAEVVKALKDAVNALEK 215 (291)
Q Consensus 189 M~-lFkk~~Kt-------------P~elVr~lre~L~~L~~ 215 (291)
|. |||++.++ |.+-+-.+|+++..|..
T Consensus 1 m~~~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~k 41 (191)
T PTZ00446 1 MRFWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEK 41 (191)
T ss_pred CccccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHH
Confidence 66 99885444 55666678888877765
No 21
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=27.78 E-value=1.3e+02 Score=25.88 Aligned_cols=54 Identities=9% Similarity=0.110 Sum_probs=46.3
Q ss_pred HHHHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhccc
Q psy12835 30 FSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKEK 85 (291)
Q Consensus 30 f~~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d~ 85 (291)
+..+.+-|.++|--+..+||.||..+..+ +-.-+...|++.+.+..+..++.++
T Consensus 39 ~ral~KRl~~~n~~v~l~AL~LLe~~vkN--CG~~fh~evask~Fl~eL~kl~~~~ 92 (144)
T cd03568 39 LKAIMKRLNHKDPNVQLRALTLLDACAEN--CGKRFHQEVASRDFTQELKKLINDR 92 (144)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHH--CCHHHHHHHhhHHHHHHHHHHhccc
Confidence 33455667899999999999999999987 7778888999999999999998775
No 22
>KOG3230|consensus
Probab=27.34 E-value=61 Score=30.16 Aligned_cols=23 Identities=48% Similarity=0.795 Sum_probs=17.4
Q ss_pred ccccCCCCCChHHHHHHHHHHHHh
Q psy12835 189 MPLFGKSQKSPAEVVKALKDAVNA 212 (291)
Q Consensus 189 M~lFkk~~KtP~elVr~lre~L~~ 212 (291)
|.+||++ +||.|+.|.=+-.|.+
T Consensus 1 m~lFgk~-~tp~e~Lr~nqRal~~ 23 (224)
T KOG3230|consen 1 MDLFGKK-KTPAELLRENQRALNK 23 (224)
T ss_pred CCcccCC-CCHHHHHHHhHHHHHH
Confidence 5689886 8999998866555554
No 23
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=26.27 E-value=4.2e+02 Score=22.80 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=55.4
Q ss_pred HHHhcChHHHHHHHHhcHHHHHHHHHHhhcCCCcchhhhhHHHHHHHhcccCc-HHHHHHHhcChhhHHHHHHHhcc
Q psy12835 9 ELLTRHKILCAEFLELNYDKVFSHYQRLLNSENYVTRRQSLKLLGELLLDRHN-FTVMTRYISNPYNLKLMMNMLKE 84 (291)
Q Consensus 9 ellt~hk~lvaefl~~Nyd~Ff~~~~~Ll~s~NYVtkRqSlKLL~ellldr~N-~~vm~~Yi~~~~NLkliM~LL~d 84 (291)
+.+.+|+.+-+.--....+.+...++.|+.|++=-.|--++.|++..+.. | .+++.++- ..-+..++.+|.+
T Consensus 6 ~~l~~~~~~~~~~~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~--~~~e~l~~~~--~~W~~~Ll~~L~~ 78 (165)
T PF08167_consen 6 STLRSCGLLLSAPSKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQ--CSWEILLSHG--SQWLRALLSILEK 78 (165)
T ss_pred HHHHccchhhcccCHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHH--hhHHHHHHHH--HHHHHHHHHHHcC
Confidence 34556665544444667889999999999999988999999999999977 5 67764433 5677888999888
No 24
>PF12552 DUF3741: Protein of unknown function (DUF3741); InterPro: IPR022212 This domain family is found in eukaryotes, and is approximately 50 amino acids in length.
Probab=25.49 E-value=67 Score=23.02 Aligned_cols=19 Identities=42% Similarity=0.712 Sum_probs=16.7
Q ss_pred hHHHHHHHhHHHHHHHHhh
Q psy12835 109 PILDILLRNQDLLVEFLTR 127 (291)
Q Consensus 109 ~I~~IL~~Nr~kLl~fl~~ 127 (291)
+..+||.-||+-+++||.+
T Consensus 25 DaLeiL~sNkdlflk~Lqd 43 (46)
T PF12552_consen 25 DALEILSSNKDLFLKFLQD 43 (46)
T ss_pred HHHHHHHhCHHHHHHHHhC
Confidence 5678999999999999975
No 25
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=25.40 E-value=92 Score=19.38 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=21.8
Q ss_pred HHHHHhhcCCCcchhhhhHHHHHHHh
Q psy12835 31 SHYQRLLNSENYVTRRQSLKLLGELL 56 (291)
Q Consensus 31 ~~~~~Ll~s~NYVtkRqSlKLL~ell 56 (291)
..+.++++++++-.|..++.-||++.
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 45668999999999999999999886
No 26
>KOG0166|consensus
Probab=24.75 E-value=79 Score=33.09 Aligned_cols=220 Identities=17% Similarity=0.272 Sum_probs=113.3
Q ss_pred HHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhccccc--cceeecceeeeeeee-CCCCC-
Q psy12835 32 HYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKEKSR--NIQFEAFHVFKVFVA-NPNKP- 107 (291)
Q Consensus 32 ~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d~sk--~Iq~eAFhvFKvFVA-NP~K~- 107 (291)
.|.+|+.|++=-.+.|++=-||.+.-|.+. +.-|+=+..-|.-+|.++....+ .++--+.-+.+++-- ||.-|
T Consensus 156 ~fi~Ll~s~~~~v~eQavWALgNIagds~~---~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~ 232 (514)
T KOG0166|consen 156 IFIQLLSSPSADVREQAVWALGNIAGDSPD---CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPF 232 (514)
T ss_pred HHHHHhcCCcHHHHHHHHHHHhccccCChH---HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcH
Confidence 367899999999999999999999999755 45588888888888888888876 333344545554433 23333
Q ss_pred hhHHHHHHHhHHHHHHHHhhcCCCCCcccccHHHHHHHHHHHhhcCCCCCCCCC-CCCCCceeeeeeeeccccchhhhhh
Q psy12835 108 KPILDILLRNQDLLVEFLTRFHTDRSEDEQFNDEKAYLIKQIKELKPIAGDNQP-SKNTGIRVLKVQRIKNESQIFSLIK 186 (291)
Q Consensus 108 ~~I~~IL~~Nr~kLl~fl~~f~~d~~~D~qF~~EK~~lI~~I~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (291)
..|..||- -|. ..... .|++-..+=-. .|..|...+..... --..|++.-=++....++-=.. -|
T Consensus 233 ~~v~~iLp----~L~----~ll~~--~D~~Vl~Da~W---AlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~-~P 298 (514)
T KOG0166|consen 233 DVVAPILP----ALL----RLLHS--TDEEVLTDACW---ALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVV-TP 298 (514)
T ss_pred HHHHHHHH----HHH----HHHhc--CCHHHHHHHHH---HHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccc-cH
Confidence 22222221 111 11111 23322222222 22333221111111 1334444332222222211000 11
Q ss_pred hhcccc----CCCCCChHHHHH-HHHHHHHhhhcCCCCCCccchhhhhHHHHHHHHhhhhhcCCCCCCCChHHHHHHHHH
Q psy12835 187 IIMPLF----GKSQKSPAEVVK-ALKDAVNALEKGDKKGEKGDKKAQEDVSKNLLLIKNMLYGTADAEPQTDIIVAQLAQ 261 (291)
Q Consensus 187 ~~M~lF----kk~~KtP~elVr-~lre~L~~L~~~~~~~~k~~~Ka~EEvsK~L~~mK~iL~G~~E~EP~~e~~v~qLa~ 261 (291)
.+++.- |.-.- .+.++. .+-..|..|-..+ ..++.-.|++-.|+.|-. |+ +++ .|
T Consensus 299 aLRaiGNIvtG~d~Q-Tq~vi~~~~L~~l~~ll~~s-----~~~~ikkEAcW~iSNItA---G~------~~q-----iq 358 (514)
T KOG0166|consen 299 ALRAIGNIVTGSDEQ-TQVVINSGALPVLSNLLSSS-----PKESIKKEACWTISNITA---GN------QEQ-----IQ 358 (514)
T ss_pred HHhhccceeeccHHH-HHHHHhcChHHHHHHHhccC-----cchhHHHHHHHHHHHhhc---CC------HHH-----HH
Confidence 122111 11000 001100 1111222222221 122244678888887644 54 355 37
Q ss_pred HHHhhChHHHHHhhcCCCCCCcccccc
Q psy12835 262 ELYNSNLLLLLIQNLNKIDFEGKKDVA 288 (291)
Q Consensus 262 Ei~~~DlL~lLi~~L~~LdFEaRKDv~ 288 (291)
.++..++++.|+..|..=||..||.++
T Consensus 359 aVida~l~p~Li~~l~~~ef~~rKEAa 385 (514)
T KOG0166|consen 359 AVIDANLIPVLINLLQTAEFDIRKEAA 385 (514)
T ss_pred HHHHcccHHHHHHHHhccchHHHHHHH
Confidence 788889999999999999999999875
No 27
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=23.96 E-value=1.4e+02 Score=25.98 Aligned_cols=44 Identities=27% Similarity=0.370 Sum_probs=32.7
Q ss_pred chhhhhHHHHHHHHhhhhhcCCCCCCCChHHHHHHHHHHHHhhCh
Q psy12835 224 DKKAQEDVSKNLLLIKNMLYGTADAEPQTDIIVAQLAQELYNSNL 268 (291)
Q Consensus 224 ~~Ka~EEvsK~L~~mK~iL~G~~E~EP~~e~~v~qLa~Ei~~~Dl 268 (291)
.++..+|+.|.|.-|-.-|-.+.=..|.-+. ..+|++++-..|.
T Consensus 63 ~kr~~~D~~KRL~iLfd~ln~g~Ls~~v~~~-L~~L~~aL~~~d~ 106 (157)
T PF07304_consen 63 KKRVVDDIEKRLNILFDHLNNGKLSKPVVDK-LHQLAQALQARDY 106 (157)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHT-S-HHHHHH-HHHHHHHHHHT-H
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHHHcCCH
Confidence 3455789999999998888766556777777 6999999988774
No 28
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=20.06 E-value=1.1e+02 Score=20.98 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=34.1
Q ss_pred hhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhccccccceeec
Q psy12835 44 TRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKEKSRNIQFEA 93 (291)
Q Consensus 44 tkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d~sk~Iq~eA 93 (291)
.|+.++.-||++ -......+..|+ ++-+..++.+|+|.+..++-.|
T Consensus 3 vR~~A~~aLg~l--~~~~~~~~~~~~--~~~~~~L~~~L~d~~~~VR~~A 48 (55)
T PF13513_consen 3 VRRAAAWALGRL--AEGCPELLQPYL--PELLPALIPLLQDDDDSVRAAA 48 (55)
T ss_dssp HHHHHHHHHHCT--TTTTHHHHHHHH--HHHHHHHHHHTTSSSHHHHHHH
T ss_pred HHHHHHHHHhhH--hcccHHHHHHHH--HHHHHHHHHHHcCCCHHHHHHH
Confidence 578888999983 344666677765 5678888899999888776554
Done!