Query psy12835
Match_columns 291
No_of_seqs 219 out of 364
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 21:01:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12835.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12835hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1upk_A MO25 protein; transfera 100.0 2.1E-66 7.3E-71 493.7 10.7 154 3-156 184-337 (341)
2 1upk_A MO25 protein; transfera 99.9 2.8E-28 9.7E-33 232.1 6.2 101 187-290 1-101 (341)
3 1bh9_A TAFII18; histone fold, 63.3 6 0.00021 27.0 3.1 29 236-266 4-33 (45)
4 4db8_A Armadillo-repeat protei 62.1 5.4 0.00018 33.2 3.3 113 27-152 11-123 (252)
5 2qk2_A LP04448P; mini spindles 57.5 7.3 0.00025 32.9 3.3 72 25-98 130-201 (242)
6 3grl_A General vesicular trans 57.3 6.3 0.00022 40.5 3.4 64 32-96 126-189 (651)
7 1xqr_A HSPBP1 protein; armadil 50.1 5.9 0.0002 36.0 1.6 114 30-153 169-286 (296)
8 4hxt_A De novo protein OR329; 48.9 23 0.0008 28.7 5.0 113 29-154 129-241 (252)
9 4hxt_A De novo protein OR329; 41.6 20 0.00067 29.2 3.4 70 29-101 171-240 (252)
10 4db6_A Armadillo repeat protei 39.8 25 0.00084 28.2 3.7 64 29-95 139-202 (210)
11 3now_A UNC-45 protein, SD10334 37.3 38 0.0013 35.4 5.5 159 29-215 624-782 (810)
12 2qfa_B Borealin; three-helical 36.7 12 0.0004 27.4 1.1 35 118-152 4-39 (62)
13 4db8_A Armadillo-repeat protei 34.9 28 0.00094 28.7 3.3 69 30-102 56-125 (252)
14 4db6_A Armadillo repeat protei 34.9 35 0.0012 27.3 3.9 72 26-100 10-81 (210)
15 3ltj_A Alpharep-4; protein eng 30.6 41 0.0014 26.9 3.6 52 32-97 49-100 (201)
16 3ltm_A Alpha-REP4; protein eng 29.7 43 0.0015 27.0 3.6 70 28-98 50-137 (211)
17 2jdq_A Importin alpha-1 subuni 29.3 25 0.00086 31.4 2.3 72 30-102 22-94 (450)
18 3ltj_A Alpharep-4; protein eng 28.5 47 0.0016 26.5 3.6 56 28-97 76-131 (201)
19 3ltm_A Alpha-REP4; protein eng 27.2 50 0.0017 26.6 3.6 68 29-97 20-105 (211)
20 2jdq_A Importin alpha-1 subuni 27.2 64 0.0022 28.7 4.6 71 29-102 277-347 (450)
21 2qk1_A Protein STU2; STU2P, XM 26.3 57 0.0019 28.3 4.0 71 26-97 144-215 (249)
22 1wa5_B Importin alpha subunit; 24.2 65 0.0022 30.2 4.2 114 29-152 342-455 (530)
23 1te4_A Conserved protein MTH18 23.9 65 0.0022 24.4 3.5 50 30-93 75-124 (131)
24 2jqq_A Conserved oligomeric go 21.9 1.8E+02 0.0063 25.7 6.3 65 197-265 72-138 (204)
25 3dad_A FH1/FH2 domain-containi 21.2 81 0.0028 29.9 4.2 92 6-104 141-233 (339)
26 1te4_A Conserved protein MTH18 21.2 54 0.0018 24.9 2.5 26 71-96 71-96 (131)
27 1oxz_A ADP-ribosylation factor 20.2 83 0.0028 27.3 3.7 26 172-203 26-51 (186)
No 1
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=100.00 E-value=2.1e-66 Score=493.68 Aligned_cols=154 Identities=73% Similarity=1.133 Sum_probs=150.9
Q ss_pred CCCcHHHHHhcChHHHHHHHHhcHHHHHHHHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHh
Q psy12835 3 LSPTPTELLTRHKILCAEFLELNYDKVFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNML 82 (291)
Q Consensus 3 ~~~Tfkellt~hk~lvaefl~~Nyd~Ff~~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL 82 (291)
||+||+||||+||++||+||++||||||++|++||+|+||||||||||||||||+||+|++||++||+|++|||+||+||
T Consensus 184 Af~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL 263 (341)
T 1upk_A 184 AFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLL 263 (341)
T ss_dssp HHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceeecceeeeeeeeCCCCChhHHHHHHHhHHHHHHHHhhcCCCCCcccccHHHHHHHHHHHhhcCCCC
Q psy12835 83 KEKSRNIQFEAFHVFKVFVANPNKPKPILDILLRNQDLLVEFLTRFHTDRSEDEQFNDEKAYLIKQIKELKPIA 156 (291)
Q Consensus 83 ~d~sk~Iq~eAFhvFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~~~D~qF~~EK~~lI~~I~~L~~~~ 156 (291)
+|+|||||+|||||||||||||+||+||.+||.+||+|||+||.+|++|+++|+||.|||++||++|++|+++.
T Consensus 264 ~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~~L~~~~ 337 (341)
T 1upk_A 264 RDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRPA 337 (341)
T ss_dssp TCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHTCCCCC
T ss_pred cCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999899999999999999999998655
No 2
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=99.94 E-value=2.8e-28 Score=232.08 Aligned_cols=101 Identities=60% Similarity=0.876 Sum_probs=77.3
Q ss_pred hhccccCCCCCChHHHHHHHHHHHHhhhcCCCCCCccchhhhhHHHHHHHHhhhhhcCCCCCCCChHHHHHHHHHHHHhh
Q psy12835 187 IIMPLFGKSQKSPAEVVKALKDAVNALEKGDKKGEKGDKKAQEDVSKNLLLIKNMLYGTADAEPQTDIIVAQLAQELYNS 266 (291)
Q Consensus 187 ~~M~lFkk~~KtP~elVr~lre~L~~L~~~~~~~~k~~~Ka~EEvsK~L~~mK~iL~G~~E~EP~~e~~v~qLa~Ei~~~ 266 (291)
|.|+ ||++||||+|+||+++|+|.+|+.++ ..+++.+|++|||+|+|++||.||||++|+||+||+ |+|||+|+|++
T Consensus 1 ~~m~-F~~~~ktP~elVr~l~d~l~~l~~~~-~~~~~~~k~~ee~sK~l~~mK~iL~G~~e~ep~~e~-~~qL~~ei~~~ 77 (341)
T 1upk_A 1 MPFP-FGKSHKSPADIVKNLKESMAVLEKQD-ISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEA-VAQLAQELYNS 77 (341)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHC----CTHHHHHHHHHHHHHHHHHHHHHC-------CHHH-HHHHHHHHHHH
T ss_pred CCCC-CCCCCCCHHHHHHHHHHHHHHHhccc-cccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCHHH-HHHHHHHHHHh
Confidence 5799 99999999999999999999999643 233455789999999999999999999999999998 99999999999
Q ss_pred ChHHHHHhhcCCCCCCcccccccc
Q psy12835 267 NLLLLLIQNLNKIDFEGKKDVAQN 290 (291)
Q Consensus 267 DlL~lLi~~L~~LdFEaRKDv~q~ 290 (291)
|+|++||.|||+||||+|||++|+
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~i 101 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQI 101 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred CHHHHHHHhcccCCchhhccHHHH
Confidence 999999999999999999999985
No 3
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=63.26 E-value=6 Score=26.97 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=21.6
Q ss_pred HHhhhhhcCCCC-CCCChHHHHHHHHHHHHhh
Q psy12835 236 LLIKNMLYGTAD-AEPQTDIIVAQLAQELYNS 266 (291)
Q Consensus 236 ~~mK~iL~G~~E-~EP~~e~~v~qLa~Ei~~~ 266 (291)
.+++.++||=|| .+|.+|. .++..|+..+
T Consensus 4 ~ei~~mMy~fGD~~~P~~ET--v~llEeiV~~ 33 (45)
T 1bh9_A 4 KELRCMMYGFGDDQNPYTES--VDILEDLVIE 33 (45)
T ss_dssp HHHHHHHHHTTSCSSCCHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcHHH--HHHHHHHHHH
Confidence 457889999888 6899985 5666666554
No 4
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=62.13 E-value=5.4 Score=33.19 Aligned_cols=113 Identities=11% Similarity=0.165 Sum_probs=74.1
Q ss_pred HHHHHHHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhccccccceeecceeeeeeeeCCCC
Q psy12835 27 DKVFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKEKSRNIQFEAFHVFKVFVANPNK 106 (291)
Q Consensus 27 d~Ff~~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d~sk~Iq~eAFhvFKvFVANP~K 106 (291)
...|..|.++|.|++.-.++.++..|+.++.. +... .+.+-+..-+..++.+|++.+..+|.+|-.+..-+...
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~--~~~~-~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--- 84 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSD--GNEQ-IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--- 84 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH--HHHH-HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS---
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CCch-HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC---
Confidence 34577888999999999999999999998876 2222 23344557799999999999999999988776655431
Q ss_pred ChhHHHHHHHhHHHHHHHHhhcCCCCCcccccHHHHHHHHHHHhhc
Q psy12835 107 PKPILDILLRNQDLLVEFLTRFHTDRSEDEQFNDEKAYLIKQIKEL 152 (291)
Q Consensus 107 ~~~I~~IL~~Nr~kLl~fl~~f~~d~~~D~qF~~EK~~lI~~I~~L 152 (291)
.++....+... ..+..|-.+..+ +|+ +=+...+..|.+|
T Consensus 85 ~~~~~~~i~~~--g~i~~L~~lL~~--~~~---~v~~~a~~~L~~l 123 (252)
T 4db8_A 85 GNEQIQAVIDA--GALPALVQLLSS--PNE---QILQEALWALSNI 123 (252)
T ss_dssp CHHHHHHHHHT--THHHHHHHGGGC--SCH---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHc--CCHHHHHHHHcC--CCH---HHHHHHHHHHHHh
Confidence 12233333322 234444444433 233 3345666666666
No 5
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=57.50 E-value=7.3 Score=32.92 Aligned_cols=72 Identities=7% Similarity=0.099 Sum_probs=56.8
Q ss_pred cHHHHHHHHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhccccccceeecceeee
Q psy12835 25 NYDKVFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKEKSRNIQFEAFHVFK 98 (291)
Q Consensus 25 Nyd~Ff~~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d~sk~Iq~eAFhvFK 98 (291)
+++.++..+...+.+.|.-+|..++.+|+.++..-........|+ +.-+..++.+|.|....++-.|+..+-
T Consensus 130 ~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~ 201 (242)
T 2qk2_A 130 SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALG 201 (242)
T ss_dssp CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 577888888888999999999999999999886533333445566 467888999999999988888876553
No 6
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=57.28 E-value=6.3 Score=40.52 Aligned_cols=64 Identities=20% Similarity=0.294 Sum_probs=51.5
Q ss_pred HHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhccccccceeeccee
Q psy12835 32 HYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKEKSRNIQFEAFHV 96 (291)
Q Consensus 32 ~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d~sk~Iq~eAFhv 96 (291)
..-.||++++|-+|..+++||..|+..|.. .+-...++.|.-+-.+|.+|.|++.-||=||-.+
T Consensus 126 ~Ll~lL~~~df~vR~~alqlL~~L~~~r~~-~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallL 189 (651)
T 3grl_A 126 LLLSLLEEFDFHVRWPGVKLLTSLLKQLGP-QVQQIILVSPMGVSRLMDLLADSREVIRNDGVLL 189 (651)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHHSHH-HHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHhcCcH-HHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHH
Confidence 345678999999999999999999998665 2444556688999999999999988888776543
No 7
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=50.11 E-value=5.9 Score=35.99 Aligned_cols=114 Identities=13% Similarity=0.124 Sum_probs=73.9
Q ss_pred HHHHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhccccccceeecceeeeeeeeCCCCChh
Q psy12835 30 FSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKEKSRNIQFEAFHVFKVFVANPNKPKP 109 (291)
Q Consensus 30 f~~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d~sk~Iq~eAFhvFKvFVANP~K~~~ 109 (291)
+.....+|.+++.-+++.+.-+|+.+.... .. ...++-+..-++.++.||++++..+|-.|...+--++.. .+.
T Consensus 169 i~~L~~lL~~~d~~v~~~A~~aLs~L~~~~--~~-~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~---~~~ 242 (296)
T 1xqr_A 169 FSVLMRAMQQQVQKLKVKSAFLLQNLLVGH--PE-HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD---FPQ 242 (296)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GG-GHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--hH-HHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC---Chh
Confidence 345667889999999999999999998752 12 233555678899999999999999998888777655554 222
Q ss_pred HHHHHHHhHHHHHHHH----hhcCCCCCcccccHHHHHHHHHHHhhcC
Q psy12835 110 ILDILLRNQDLLVEFL----TRFHTDRSEDEQFNDEKAYLIKQIKELK 153 (291)
Q Consensus 110 I~~IL~~Nr~kLl~fl----~~f~~d~~~D~qF~~EK~~lI~~I~~L~ 153 (291)
........+..|..+| +..+. . +...+|.++..+-|+.+=
T Consensus 243 ~~~~~~~~~~~l~~lL~~~~~~lq~---~-e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 243 GVRECREPELGLEELLRHRCQLLQQ---H-EEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHHHCGGGCHHHHHHHHHHHHTT---C-GGGHHHHHHHHHHHHHHC
T ss_pred HHHHHhccHHHHHHHHHHHHHHccc---h-HHHHHHHHHHHHHHHHHc
Confidence 2222121111122222 22211 1 235788888888888764
No 8
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=48.87 E-value=23 Score=28.74 Aligned_cols=113 Identities=14% Similarity=0.242 Sum_probs=75.5
Q ss_pred HHHHHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhccccccceeecceeeeeeeeCCCCCh
Q psy12835 29 VFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKEKSRNIQFEAFHVFKVFVANPNKPK 108 (291)
Q Consensus 29 Ff~~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d~sk~Iq~eAFhvFKvFVANP~K~~ 108 (291)
.+....+++.+++.-+++.++..|+.+.....+ ..+.+-+..-+..++.+|.+.+..++..|..++--+.. .++
T Consensus 129 ~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~ 202 (252)
T 4hxt_A 129 GVEVLVKLLTSTDSEVQKEAARALANIASGPDE---AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS---GPT 202 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH---HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT---SBH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH---HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc---CCH
Confidence 466677889999999999999999999875322 22344457889999999999999999999887766654 233
Q ss_pred hHHHHHHHhHHHHHHHHhhcCCCCCcccccHHHHHHHHHHHhhcCC
Q psy12835 109 PILDILLRNQDLLVEFLTRFHTDRSEDEQFNDEKAYLIKQIKELKP 154 (291)
Q Consensus 109 ~I~~IL~~Nr~kLl~fl~~f~~d~~~D~qF~~EK~~lI~~I~~L~~ 154 (291)
.....+.. ...+..|-++..+ .|+ +-+......|.+|..
T Consensus 203 ~~~~~l~~--~~~i~~L~~ll~~--~~~---~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 203 SAIKAIVD--AGGVEVLQKLLTS--TDS---EVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHH--TTHHHHHHHGGGC--SCH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--CCCHHHHHHHHCC--CcH---HHHHHHHHHHHHHHc
Confidence 44444433 2345555555544 244 334555555555533
No 9
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=41.64 E-value=20 Score=29.22 Aligned_cols=70 Identities=13% Similarity=0.191 Sum_probs=53.9
Q ss_pred HHHHHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhccccccceeecceeeeeee
Q psy12835 29 VFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKEKSRNIQFEAFHVFKVFV 101 (291)
Q Consensus 29 Ff~~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d~sk~Iq~eAFhvFKvFV 101 (291)
.+..+..++.+++.-++..++..|+.+... +.. ..+++.+..-+..++.+|.+.+..++.+|..+..-+.
T Consensus 171 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 171 GVEVLVKLLTSTDSEVQKEAARALANIASG--PTS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--BHH-HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHH-HHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 556677889999999999999999999863 333 3345556778899999999998888888776554433
No 10
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=39.80 E-value=25 Score=28.24 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=49.3
Q ss_pred HHHHHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhccccccceeecce
Q psy12835 29 VFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKEKSRNIQFEAFH 95 (291)
Q Consensus 29 Ff~~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d~sk~Iq~eAFh 95 (291)
.+.....++.+++.-+++.++..|+.+..... .. ...+.+..-+..++.+|.+.+..++-+|..
T Consensus 139 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~--~~-~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~ 202 (210)
T 4db6_A 139 ALPALVQLLSSPNEQILQEALWALSNIASGGN--EQ-KQAVKEAGALEKLEQLQSHENEKIQKEAQE 202 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH--HH-HHHHHHTTHHHHHHHGGGCSCHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc--HH-HHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 45666788999999999999999999997622 22 234555678889999999988888777654
No 11
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=37.32 E-value=38 Score=35.41 Aligned_cols=159 Identities=10% Similarity=0.152 Sum_probs=96.0
Q ss_pred HHHHHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhccccccceeecceeeeeeeeCCCCCh
Q psy12835 29 VFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKEKSRNIQFEAFHVFKVFVANPNKPK 108 (291)
Q Consensus 29 Ff~~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d~sk~Iq~eAFhvFKvFVANP~K~~ 108 (291)
.+..+..|+.++|--.++.|+.+|+.|...+ ....+++.+..-++.+..||.+.+..+|-+|--.+--..+. ++
T Consensus 624 ~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~---~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~---s~ 697 (810)
T 3now_A 624 GVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE---DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV---SV 697 (810)
T ss_dssp HHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH---HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH---CH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh---HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC---CH
Confidence 4556778899999999999999999999865 45677886678999999999999999999987655444441 22
Q ss_pred hHHHHHHHhHHHHHHHHhhcCCCCCcccccHHHHHHHHHHHhhcCCCCCCCCCCCCCCceeeeeeeeccccchhhhhhhh
Q psy12835 109 PILDILLRNQDLLVEFLTRFHTDRSEDEQFNDEKAYLIKQIKELKPIAGDNQPSKNTGIRVLKVQRIKNESQIFSLIKII 188 (291)
Q Consensus 109 ~I~~IL~~Nr~kLl~fl~~f~~d~~~D~qF~~EK~~lI~~I~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (291)
.....+..+ ...+..|-++..+ .|..... .-.-.|.+|-.. ++ ..+ ..+.. . -..+.+
T Consensus 698 ~~~~~ii~~-~g~I~~Lv~LL~s--~d~~vq~---~A~~aL~NL~~~--s~----e~~------~~l~e-~---G~i~~L 755 (810)
T 3now_A 698 KCCEKILAI-ASWLDILHTLIAN--PSPAVQH---RGIVIILNMINA--GE----EIA------KKLFE-T---DIMELL 755 (810)
T ss_dssp HHHHHHHTS-TTHHHHHHHHHTC--SSHHHHH---HHHHHHHHHHTT--CH----HHH------HHHHT-S---THHHHH
T ss_pred HHHHHHHHH-cCCHHHHHHHHCC--CCHHHHH---HHHHHHHHHHhC--CH----HHH------HHHHH-C---CCHHHH
Confidence 223333333 4555666666554 3444443 344444444221 11 000 00100 0 133445
Q ss_pred ccccCCCCCChHHHHHHHHHHHHhhhc
Q psy12835 189 MPLFGKSQKSPAEVVKALKDAVNALEK 215 (291)
Q Consensus 189 M~lFkk~~KtP~elVr~lre~L~~L~~ 215 (291)
..+-+.+.-.-.+++..+.++|..+-.
T Consensus 756 ~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 756 SGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp TTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 555433211246788888888877654
No 12
>2qfa_B Borealin; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=36.65 E-value=12 Score=27.41 Aligned_cols=35 Identities=23% Similarity=0.470 Sum_probs=25.4
Q ss_pred HHHHHHHHhhcCCCCC-cccccHHHHHHHHHHHhhc
Q psy12835 118 QDLLVEFLTRFHTDRS-EDEQFNDEKAYLIKQIKEL 152 (291)
Q Consensus 118 r~kLl~fl~~f~~d~~-~D~qF~~EK~~lI~~I~~L 152 (291)
.+||-.||++|..+-. -=.++..+.+.++++|+++
T Consensus 4 ~~KLasFLkDFD~ev~~~~~~~~~~~~~llk~i~~~ 39 (62)
T 2qfa_B 4 RRKLASFLKDFDREVEIRIKQIESDRQNLLKEVDNL 39 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999943310 1345788889999998875
No 13
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=34.91 E-value=28 Score=28.73 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=52.1
Q ss_pred HHHHHHhhcCCCcchhhhhHHHHHHHhcc-cCcHHHHHHHhcChhhHHHHHHHhccccccceeecceeeeeeee
Q psy12835 30 FSHYQRLLNSENYVTRRQSLKLLGELLLD-RHNFTVMTRYISNPYNLKLMMNMLKEKSRNIQFEAFHVFKVFVA 102 (291)
Q Consensus 30 f~~~~~Ll~s~NYVtkRqSlKLL~ellld-r~N~~vm~~Yi~~~~NLkliM~LL~d~sk~Iq~eAFhvFKvFVA 102 (291)
+..+.++|.+++.-.++.++..|+.+... +.+. ..+-+..-+..++.+|++.+..++..|-.++.-+..
T Consensus 56 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~----~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 125 (252)
T 4db8_A 56 LPALVQLLSSPNEQILQEALWALSNIASGGNEQI----QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 125 (252)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH----HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH----HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 34567889999999999999999999873 3333 334445678999999999988888887766655443
No 14
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=34.86 E-value=35 Score=27.28 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhccccccceeecceeeeee
Q psy12835 26 YDKVFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKEKSRNIQFEAFHVFKVF 100 (291)
Q Consensus 26 yd~Ff~~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d~sk~Iq~eAFhvFKvF 100 (291)
.+.+...+..||.|++.-.++.++..|+.+... +... ...+-+..-+..++.+|++.+..++..|-..+--+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~--~~~~-~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 81 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASG--GNEQ-IQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 81 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--CHHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcC--CHHH-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 344555677899999999999999999999743 2222 23444457789999999999888888877655433
No 15
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=30.59 E-value=41 Score=26.89 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=31.5
Q ss_pred HHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhccccccceeecceee
Q psy12835 32 HYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKEKSRNIQFEAFHVF 97 (291)
Q Consensus 32 ~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d~sk~Iq~eAFhvF 97 (291)
.+..++.+++.-+|+.++..|+.+ .+++.+..++.+|.|++..++..|....
T Consensus 49 ~L~~~l~~~~~~vr~~a~~~L~~~--------------~~~~~~~~L~~~l~d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 49 PLIKALKDEDAWVRRAAADALGQI--------------GDERAVEPLIKALKDEDGWVRQSAAVAL 100 (201)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHH--------------CCGGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhh--------------CCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 333444445555555555555443 4566777888888888887777765544
No 16
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=29.73 E-value=43 Score=27.00 Aligned_cols=70 Identities=16% Similarity=0.275 Sum_probs=40.6
Q ss_pred HHHHHHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHH------------------HhcChhhHHHHHHHhccccccc
Q psy12835 28 KVFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTR------------------YISNPYNLKLMMNMLKEKSRNI 89 (291)
Q Consensus 28 ~Ff~~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~------------------Yi~~~~NLkliM~LL~d~sk~I 89 (291)
..+..+..++.+++...|+.++..||.+- ++.-...+.. .+.+++.+..++.+|.|++..+
T Consensus 50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~v 128 (211)
T 3ltm_A 50 RAVEPLIKALKDEDAWVRRAAADALGQIG-DERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFV 128 (211)
T ss_dssp GGHHHHHHHTTCSCHHHHHHHHHHHHHHC-CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHH
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHhhC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHH
Confidence 34445556666777777777777776653 1111222222 2345556777778888877777
Q ss_pred eeecceeee
Q psy12835 90 QFEAFHVFK 98 (291)
Q Consensus 90 q~eAFhvFK 98 (291)
+..|-..+-
T Consensus 129 r~~a~~aL~ 137 (211)
T 3ltm_A 129 RIAAAFALG 137 (211)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766655443
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=29.33 E-value=25 Score=31.43 Aligned_cols=72 Identities=21% Similarity=0.243 Sum_probs=54.1
Q ss_pred HHHHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhccc-cccceeecceeeeeeee
Q psy12835 30 FSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKEK-SRNIQFEAFHVFKVFVA 102 (291)
Q Consensus 30 f~~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d~-sk~Iq~eAFhvFKvFVA 102 (291)
+..+.+++.|++.-+++.++..|+.++....+..+ ..++.++.-+..+..+|++. +..+|.+|..++.-+..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~ 94 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIAS 94 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 44556677899999999999999999863333222 34566667888889999998 88899999887765544
No 18
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=28.47 E-value=47 Score=26.53 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=42.1
Q ss_pred HHHHHHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhccccccceeecceee
Q psy12835 28 KVFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKEKSRNIQFEAFHVF 97 (291)
Q Consensus 28 ~Ff~~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d~sk~Iq~eAFhvF 97 (291)
..+..+..+|.+++.-+|+.++..|+.+ .+++-+..+..+|.|++..++..|-..+
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~--------------~~~~~~~~L~~~l~d~~~~vr~~a~~aL 131 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQI--------------GDERAVEPLIKALKDEDWFVRIAAAFAL 131 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHH--------------CCGGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh--------------CcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3455566788889999999999999875 3566777888888888877777665443
No 19
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=27.22 E-value=50 Score=26.59 Aligned_cols=68 Identities=15% Similarity=0.248 Sum_probs=45.2
Q ss_pred HHHHHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHh------------------cChhhHHHHHHHhccccccce
Q psy12835 29 VFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYI------------------SNPYNLKLMMNMLKEKSRNIQ 90 (291)
Q Consensus 29 Ff~~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi------------------~~~~NLkliM~LL~d~sk~Iq 90 (291)
-+..+..+|.+++..+|+.++..|+.+-. +.-...+...+ .+++-+..++.+|.|++..++
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr 98 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD-ERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVR 98 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHH
Confidence 44556677889999999988888887643 22233333333 445567778888888877777
Q ss_pred eecceee
Q psy12835 91 FEAFHVF 97 (291)
Q Consensus 91 ~eAFhvF 97 (291)
..|...+
T Consensus 99 ~~a~~aL 105 (211)
T 3ltm_A 99 QSAAVAL 105 (211)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665544
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=27.16 E-value=64 Score=28.75 Aligned_cols=71 Identities=11% Similarity=0.130 Sum_probs=53.4
Q ss_pred HHHHHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhccccccceeecceeeeeeee
Q psy12835 29 VFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKEKSRNIQFEAFHVFKVFVA 102 (291)
Q Consensus 29 Ff~~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d~sk~Iq~eAFhvFKvFVA 102 (291)
.+..+..++.+++.-+++.++..|+.+... +...+...+ +..-+..++.+|++.+..+|.+|..++--+..
T Consensus 277 ~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~--~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 277 ALQSLLHLLSSPKESIKKEACWTISNITAG--NRAQIQTVI-DANIFPALISILQTAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTTS--CHHHHHHHH-HTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 556677889999999999999999999853 334444434 34678899999999988888888766655544
No 21
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=26.28 E-value=57 Score=28.29 Aligned_cols=71 Identities=10% Similarity=0.272 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhcCCCcchhhhhHHHHHHHhcccCcH-HHHHHHhcChhhHHHHHHHhccccccceeecceee
Q psy12835 26 YDKVFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNF-TVMTRYISNPYNLKLMMNMLKEKSRNIQFEAFHVF 97 (291)
Q Consensus 26 yd~Ff~~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~-~vm~~Yi~~~~NLkliM~LL~d~sk~Iq~eAFhvF 97 (291)
.+..+..+...|.+.|+-+|.+++.+|+.++..-.-. ..+..|+ ++.-+..++.+|.|..+.++-.|+..+
T Consensus 144 l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l-~~~iip~l~~~l~D~~~~VR~aA~~~l 215 (249)
T 2qk1_A 144 NEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYL-KDEVVPIVIQIVNDTQPAIRTIGFESF 215 (249)
T ss_dssp THHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHH-TTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5677777778889999999999999999999653221 4445565 345677888899999888877776443
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=24.22 E-value=65 Score=30.15 Aligned_cols=114 Identities=11% Similarity=0.113 Sum_probs=72.7
Q ss_pred HHHHHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhccccccceeecceeeeeeeeCCCCCh
Q psy12835 29 VFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKEKSRNIQFEAFHVFKVFVANPNKPK 108 (291)
Q Consensus 29 Ff~~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d~sk~Iq~eAFhvFKvFVANP~K~~ 108 (291)
++..+..+|.+++.-++..++..|+.|... +...+..++ +..-+..++.+|.+.+..++.+|...+--+.......+
T Consensus 342 ~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~--~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 418 (530)
T 1wa5_B 342 VLPALRLLLSSPKENIKKEACWTISNITAG--NTEQIQAVI-DANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRP 418 (530)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHH-HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCT
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcH
Confidence 555677889999999999999999998753 434444444 55678899999999998999988877776655422111
Q ss_pred hHHHHHHHhHHHHHHHHhhcCCCCCcccccHHHHHHHHHHHhhc
Q psy12835 109 PILDILLRNQDLLVEFLTRFHTDRSEDEQFNDEKAYLIKQIKEL 152 (291)
Q Consensus 109 ~I~~IL~~Nr~kLl~fl~~f~~d~~~D~qF~~EK~~lI~~I~~L 152 (291)
+....+.. ..++..|-++..+. |. +-+...+..|.+|
T Consensus 419 ~~~~~l~~--~~~l~~L~~ll~~~--~~---~v~~~al~aL~~l 455 (530)
T 1wa5_B 419 DIIRYLVS--QGCIKPLCDLLEIA--DN---RIIEVTLDALENI 455 (530)
T ss_dssp HHHHHHHH--TTCHHHHHHHTTTC--CH---HHHHHHHHHHHHH
T ss_pred HHHHHHHH--CCCHHHHHHHHhCC--CH---HHHHHHHHHHHHH
Confidence 22223332 23555555555442 33 2234445555544
No 23
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=23.85 E-value=65 Score=24.38 Aligned_cols=50 Identities=12% Similarity=0.091 Sum_probs=31.1
Q ss_pred HHHHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhccccccceeec
Q psy12835 30 FSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKEKSRNIQFEA 93 (291)
Q Consensus 30 f~~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d~sk~Iq~eA 93 (291)
+..+..++.+++.-+|+.++.-||.+ .+++-+..+..+|+|++..++..|
T Consensus 75 ~~~L~~~L~d~~~~VR~~A~~aL~~~--------------~~~~a~~~L~~~l~d~~~~vr~~A 124 (131)
T 1te4_A 75 VEPLIKLLEDDSGFVRSGAARSLEQI--------------GGERVRAAMEKLAETGTGFARKVA 124 (131)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHH--------------CSHHHHHHHHHHTTSCCTHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh--------------CcHHHHHHHHHHHhCCCHHHHHHH
Confidence 34444455555555666666666554 356667777888888777776554
No 24
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=21.87 E-value=1.8e+02 Score=25.66 Aligned_cols=65 Identities=17% Similarity=0.254 Sum_probs=43.6
Q ss_pred CChHHHHHHHHHHHHhhhcCCCCCCccchhhh--hHHHHHHHHhhhhhcCCCCCCCChHHHHHHHHHHHHh
Q psy12835 197 KSPAEVVKALKDAVNALEKGDKKGEKGDKKAQ--EDVSKNLLLIKNMLYGTADAEPQTDIIVAQLAQELYN 265 (291)
Q Consensus 197 KtP~elVr~lre~L~~L~~~~~~~~k~~~Ka~--EEvsK~L~~mK~iL~G~~E~EP~~e~~v~qLa~Ei~~ 265 (291)
....|.|...-|.|.+||.-...= .+..+.. -+++|.|+.==+.++|++.-|+ | +|..|+.++|+
T Consensus 72 ~~Tre~v~d~l~YLkkLD~l~~~L-q~h~~Lse~l~l~kqLs~sLh~mC~~~pld~--e-Lc~~l~~qL~~ 138 (204)
T 2jqq_A 72 SNTQEIIKDVLEYLKKLDEIYGSL-RNHSQLTEALSLGKRLSKSLHEMCGIEPLEE--E-ICSGLIEQLYK 138 (204)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHTC-SSSSHHHHHHHHHHHHHHHHHHHHTSSCCCH--H-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHhCCCCCcH--H-HHHHHHHHHHH
Confidence 345899999999999988621000 1222222 3688888888889999976443 4 48888888765
No 25
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=21.23 E-value=81 Score=29.87 Aligned_cols=92 Identities=20% Similarity=0.286 Sum_probs=65.9
Q ss_pred cHHHHHhcChHHHHHHHHhc-HHHHHHHHHHhhcCCCcchhhhhHHHHHHHhcccCcHHHHHHHhcChhhHHHHHHHhcc
Q psy12835 6 TPTELLTRHKILCAEFLELN-YDKVFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKE 84 (291)
Q Consensus 6 Tfkellt~hk~lvaefl~~N-yd~Ff~~~~~Ll~s~NYVtkRqSlKLL~ellldr~N~~vm~~Yi~~~~NLkliM~LL~d 84 (291)
+++.+|..-+..|.||+..+ .+..+...... ++|| .-.+|.-|++|++ +-.=|+--|++++.++.+-.++.+
T Consensus 141 sLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~--~gN~--q~Y~L~AL~~LM~---~v~Gm~gvvs~~~fI~~lyslv~s 213 (339)
T 3dad_A 141 SLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA--DHNY--QSYILRALGQLML---FVDGMLGVVAHSDTIQWLYTLCAS 213 (339)
T ss_dssp HHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS--CHHH--HHHHHHHHHHHTT---SHHHHHHHHHCHHHHHHHHHGGGC
T ss_pred HHHHHhhcchHHHHHHHHhccHHHHHHHHHhc--ChHH--HHHHHHHHHHHHh---ccccccchhCCHHHHHHHHHHHcC
Confidence 45666767788899999754 55554443322 5555 6789999999986 445677778899999999999997
Q ss_pred ccccceeecceeeeeeeeCC
Q psy12835 85 KSRNIQFEAFHVFKVFVANP 104 (291)
Q Consensus 85 ~sk~Iq~eAFhvFKvFVANP 104 (291)
...+|.=-|-.++.+||-+.
T Consensus 214 ~~~~V~k~AL~LL~v~V~~s 233 (339)
T 3dad_A 214 LSRLVVKTALKLLLVFVEYS 233 (339)
T ss_dssp SCHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHccC
Confidence 77776656666666666554
No 26
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=21.23 E-value=54 Score=24.86 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=18.4
Q ss_pred ChhhHHHHHHHhccccccceeeccee
Q psy12835 71 NPYNLKLMMNMLKEKSRNIQFEAFHV 96 (291)
Q Consensus 71 ~~~NLkliM~LL~d~sk~Iq~eAFhv 96 (291)
+++-+..+..+|.|++..++..|-..
T Consensus 71 ~~~a~~~L~~~L~d~~~~VR~~A~~a 96 (131)
T 1te4_A 71 DERAVEPLIKLLEDDSGFVRSGAARS 96 (131)
T ss_dssp SHHHHHHHHHHHHHCCTHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45566777788888888887776543
No 27
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=20.25 E-value=83 Score=27.26 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=11.8
Q ss_pred eeeeccccchhhhhhhhccccCCCCCChHHHH
Q psy12835 172 VQRIKNESQIFSLIKIIMPLFGKSQKSPAEVV 203 (291)
Q Consensus 172 ~~~~~~~~~~~~~~~~~M~lFkk~~KtP~elV 203 (291)
.-+|-+|-+==+|.. |- ++++|.||.
T Consensus 26 ~~if~deekSa~L~e----Li--rs~~PeDL~ 51 (186)
T 1oxz_A 26 NVIFEDEEKSKMLAR----LL--KSSHPEDLR 51 (186)
T ss_dssp -----CTTHHHHHHH----HH--SCCSHHHHH
T ss_pred cccCCcHHHHHHHHH----Hh--cCCChhhHH
Confidence 346777776222322 33 458898874
Done!