RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12835
(291 letters)
>gnl|CDD|219909 pfam08569, Mo25, Mo25-like. Mo25-like proteins are involved in
both polarised growth and cytokinesis. In fission yeast
Mo25 is localised alternately to the spindle pole body
and to the site cell division in a cell cycle dependent
manner.
Length = 334
Score = 250 bits (641), Expect = 3e-82
Identities = 103/149 (69%), Positives = 123/149 (82%)
Query: 6 TPTELLTRHKILCAEFLELNYDKVFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVM 65
T +LLT HK L AEFL NYD+ FS + +LL S NYVT+RQSLKLLGELLLDR N VM
Sbjct: 186 TFKDLLTTHKKLVAEFLLNNYDRFFSMFNKLLQSTNYVTKRQSLKLLGELLLDRANSKVM 245
Query: 66 TRYISNPYNLKLMMNMLKEKSRNIQFEAFHVFKVFVANPNKPKPILDILLRNQDLLVEFL 125
T+YIS+P NLKLMMN+L++KS+NIQFEAFHVFKVFVANPNK KPI DIL++N+D L+EFL
Sbjct: 246 TKYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKSKPIQDILVKNRDKLLEFL 305
Query: 126 TRFHTDRSEDEQFNDEKAYLIKQIKELKP 154
F TDR++DEQF DEK ++IKQI+ L P
Sbjct: 306 EDFSTDRTDDEQFLDEKEFIIKQIESLPP 334
Score = 99.6 bits (249), Expect = 3e-24
Identities = 51/99 (51%), Positives = 69/99 (69%), Gaps = 4/99 (4%)
Query: 191 LFGKSQKSPAEVVKALKDAVNALEKGDKKGEKGDKKAQEDVSKNLLLIKNMLYGTADAEP 250
LF KS K+P+++V++LKD + L D +KAQE+VSKNL +K +L G DAEP
Sbjct: 4 LFKKSPKTPSDLVRSLKDQLLKL---DSLSSDNAEKAQEEVSKNLSQLKEILVGDTDAEP 60
Query: 251 QTDIIVAQLAQELYNSNLLLLLIQNLNKIDFEGKKDVAQ 289
+ I AQLAQE+Y+ +LL LLI NL+K+DFE +KDVA
Sbjct: 61 TQEQI-AQLAQEMYSEDLLYLLIDNLHKLDFETRKDVAL 98
>gnl|CDD|220555 pfam10079, DUF2317, Uncharacterized protein conserved in bacteria
(DUF2317). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 541
Score = 32.2 bits (74), Expect = 0.33
Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 16/101 (15%)
Query: 108 KPILDILLRNQDLLVEFLTRFHTDRSEDEQFNDEKAYLIKQIKELKPIAGDNQPS----- 162
I D+ L +LL E + + D F + KA L Q K L+ A PS
Sbjct: 397 LSIEDVFLHGLELLKEKVLEEKANSEIDIDFEEAKAELEAQFKRLREEAAKIDPSLEGAL 456
Query: 163 -KNTGI----------RVLKVQRIKNESQIFSLIKIIMPLF 192
N R+LK QR K+E + ++ LF
Sbjct: 457 EANEAKILKQLEFLEKRLLKAQRRKHEELLRQFDRLQTALF 497
>gnl|CDD|222234 pfam13575, DUF4135, Domain of unknown function (DUF4135). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and archaea, and is
approximately 380 amino acids in length. The family is
found in association with pfam05147. This domain may be
involved in synthesis of a lantibiotic compound.
Length = 369
Score = 30.7 bits (70), Expect = 0.76
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 110 ILDILLRNQDLLVEFLTRFHTDRSEDEQFNDEKAYLIKQIKELKPIAGDNQPSKNTGIRV 169
+ + D VE L R DRSE ++ + ++ +K GD + N G V
Sbjct: 8 LATTIENWLDNTVELLERLAADRSELQETFLIGD--LGKLTSIKLGLGD---THNGGRSV 62
Query: 170 LKVQ 173
+
Sbjct: 63 AILT 66
>gnl|CDD|240974 cd12530, RRM3_EAR1_like, RNA recognition motif 3 in terminal
EAR1-like proteins. This subgroup corresponds to the
RRM3 of terminal EAR1-like proteins, including terminal
EAR1-like protein 1 and 2 (TEL1 and TEL2) found in land
plants. They may play a role in the regulation of leaf
initiation. The terminal EAR1-like proteins are
putative RNA-binding proteins carrying three RNA
recognition motifs (RRMs), also termed RBDs (RNA
binding domains) or RNPs (ribonucleoprotein domains),
and TEL characteristic motifs that allow sequence and
putative functional discrimination between the terminal
EAR1-like proteins and Mei2-like proteins. .
Length = 101
Score = 27.1 bits (60), Expect = 4.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 63 TVMTRYISNPYNLKLMMNML 82
T+M + I N Y+ KL+++ML
Sbjct: 3 TLMIKNIPNKYSQKLLLDML 22
>gnl|CDD|129629 TIGR00538, hemN, oxygen-independent coproporphyrinogen III oxidase.
This model represents HemN, the oxygen-independent
coproporphyrinogen III oxidase that replaces HemF
function under anaerobic conditions. Several species,
including E. coli, Helicobacter pylori, and Aquifex
aeolicus, have both a member of this family and a member
of another, closely related family for which there is no
evidence of coproporphyrinogen III oxidase activity.
Members of this family have a perfectly conserved motif
PYRT[SC]YP in a region N-terminal to the region of
homology with the related uncharacterized protein
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Heme, porphyrin, and cobalamin].
Length = 455
Score = 28.2 bits (63), Expect = 6.2
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 112 DILLRNQDLLVEFLTRFHTDRSE-DEQFN-DEKAYLIKQIKELKPIAGDNQPSKNT-GIR 168
D +R ++++ + F D S+ +E+F+ D Y K+++ LKP+ D + GI
Sbjct: 364 DDCIR-REVIKSLMCNFKLDYSKIEEKFDLDFADYFAKELELLKPLEEDGLLDVDEKGIE 422
Query: 169 VLKVQR--IKNESQIF 182
V R I+N + +F
Sbjct: 423 VTPKGRLLIRNIAMVF 438
>gnl|CDD|225499 COG2948, VirB10, Type IV secretory pathway, VirB10 components
[Intracellular trafficking and secretion].
Length = 360
Score = 27.8 bits (62), Expect = 8.2
Identities = 17/92 (18%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 192 FGKSQKSPAEVVKALKDAVNALEKGDKKGEKGDKKAQEDVSKNLLLIKNMLYG------- 244
+S ++ V AL +A A G+ + A+ED + + +
Sbjct: 118 RVESDRAVGRVRAALANAAPAAAAPPPAGQPSGQSAKEDFAGAVNPTQPFEVAAGTVIPA 177
Query: 245 ---TADAEPQTDIIVAQLAQELYNSNLLLLLI 273
TA ++VAQ++++++++ ++LI
Sbjct: 178 VLITAINSDLPGMVVAQVSRDVFDATGRVVLI 209
>gnl|CDD|112963 pfam04173, DoxD, TQO small subunit DoxD. DoxD is a subunit of the
terminal quinol oxidase present in the plasma membrane
of Acidianus ambivalens, with calculated molecular mass
of 20.4 kDa. Thiosulphate:quinone oxidoreductase (TQO)
is one of the early steps in elemental sulphur
oxidation. A novel TQO enzyme was purified from the
thermo-acidophilic archaeon Acidianus ambivalens and
shown to consist of a large subunit (DoxD) and a smaller
subunit (DoxA). The DoxD- and DoxA-like two subunits are
fused together in a single polypeptide in Bacteroides
thetaiotaomicron DoxD.
Length = 167
Score = 27.0 bits (60), Expect = 8.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 100 FVANPNKPKPILDILLRNQDLLVEFLTRF 128
F+ + K L+ +L N LLV FL F
Sbjct: 43 FLPHAGPIKGFLEYVLENPPLLVGFLVMF 71
>gnl|CDD|234770 PRK00454, engB, GTP-binding protein YsxC; Reviewed.
Length = 196
Score = 27.0 bits (61), Expect = 10.0
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 13/60 (21%)
Query: 32 HYQRLLNSENYVTRRQSLKLLGELLLD-RHNFTVMTRYISNPYNLKLMMNMLKEKSRNIQ 90
+Q+L+ E Y+ R++LK + LL+D RH M+ LKE +
Sbjct: 92 KWQKLI--EEYLRTRENLKGV-VLLIDSRHPLKE---------LDLQMIEWLKEYGIPVL 139
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.368
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,640,938
Number of extensions: 1419241
Number of successful extensions: 1523
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1520
Number of HSP's successfully gapped: 42
Length of query: 291
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 195
Effective length of database: 6,679,618
Effective search space: 1302525510
Effective search space used: 1302525510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)