RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12835
         (291 letters)



>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 330

 Score =  236 bits (603), Expect = 3e-77
 Identities = 113/151 (74%), Positives = 135/151 (89%)

Query: 6   TPTELLTRHKILCAEFLELNYDKVFSHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVM 65
           T  +LLTRHK+L AEFLE +YD+ FS Y++LL+SENYVT+RQSLKLLGELLLDRHNFT+M
Sbjct: 178 TFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIM 237

Query: 66  TRYISNPYNLKLMMNMLKEKSRNIQFEAFHVFKVFVANPNKPKPILDILLRNQDLLVEFL 125
           T+YIS P NLKLMMN+L++KSRNIQFEAFHVFKVFVANPNK +PILDILL+NQ  L+EFL
Sbjct: 238 TKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFL 297

Query: 126 TRFHTDRSEDEQFNDEKAYLIKQIKELKPIA 156
           ++F  DR+EDEQFNDEK YL+KQI++LK  A
Sbjct: 298 SKFQNDRTEDEQFNDEKTYLVKQIRDLKRPA 328



 Score =  104 bits (262), Expect = 7e-27
 Identities = 56/93 (60%), Positives = 71/93 (76%), Gaps = 2/93 (2%)

Query: 197 KSPAEVVKALKDAVNALEKGDKKGEKGDKKAQEDVSKNLLLIKNMLYGTADAEPQTDIIV 256
           KSPA++VK LK+++  LEK D   +K  +KA E+VSKNL+ +K +LYGT + EPQT+  V
Sbjct: 1   KSPADIVKNLKESMAVLEKQDI-SDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEA-V 58

Query: 257 AQLAQELYNSNLLLLLIQNLNKIDFEGKKDVAQ 289
           AQLAQELYNS LL  L+ +L  IDFEGKKDVAQ
Sbjct: 59  AQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQ 91


>d1d4oa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII) {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 177

 Score = 29.3 bits (66), Expect = 0.31
 Identities = 25/152 (16%), Positives = 55/152 (36%), Gaps = 25/152 (16%)

Query: 73  YNLKLMMNMLKEKSRNIQFEAFHVFKVFVANPNKPKPILDILLRNQDLLVEFLTRFHTDR 132
           Y +  ++ ML E+ + ++F    V              L++LL      V +      D 
Sbjct: 36  YPIADLVKMLSEQGKKVRFGIHPVAGRMPGQ-------LNVLLAEAG--VPYDIVLEMDE 86

Query: 133 SEDEQFNDEKAYLIKQIKELKPIAGDNQPSKNTGIRVLKVQRIKN--------------- 177
              +  + +   +I     +   A ++  S   G+ VL+V + K                
Sbjct: 87  INHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAV 146

Query: 178 ESQIFSLIKIIMPLFGKSQKSPAEVVKALKDA 209
           ++ IF      M L G ++K+   +   ++++
Sbjct: 147 DNPIFYKPNTAM-LLGDAKKTCDALQAKVRES 177


>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 77

 Score = 27.4 bits (61), Expect = 0.47
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 85  KSRNIQFEAFHVFKVFVANPNKPKPI-LD---ILLRNQDLLVEFL 125
           K R +Q E   VF++   +  K   +  +     L  ++L V+FL
Sbjct: 33  KVRGLQPECCAVFRLLHEHKGKKARLDWNTDAASLIGEELQVDFL 77


>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene
           serine/threonine-protein kinase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 73

 Score = 27.0 bits (60), Expect = 0.69
 Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 7/45 (15%)

Query: 85  KSRNIQFEAFHVFKVFVANPNKPKPI-LD---ILLRNQDLLVEFL 125
           K R +  +   V+++      +      D     L  ++L+VE L
Sbjct: 32  KVRGLNQDCCVVYRLI---KGRKTVTAWDTAIAPLDGEELIVEVL 73


>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli
           [TaxId: 562]}
          Length = 276

 Score = 27.1 bits (58), Expect = 2.5
 Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 14/82 (17%)

Query: 35  RLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISNPYNLKLMMNMLKEKSRNIQFEAF 94
           RLL+  N + R  S ++L                      ++L +    +K+   +    
Sbjct: 26  RLLDDHNSLKRISSARVLQL--------------RGGQDAVRLAIEFCSDKNYIRRDIGA 71

Query: 95  HVFKVFVANPNKPKPILDILLR 116
            +             + +IL  
Sbjct: 72  FILGQIKICKKCEDNVFNILNN 93


>d1pnoa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII)
           {Rhodospirillum rubrum [TaxId: 1085]}
          Length = 180

 Score = 25.5 bits (56), Expect = 6.7
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 16/79 (20%)

Query: 143 AYLIKQIKELKPIAGDNQPSKNTGIRVLKVQRIKN---------------ESQIFSLIKI 187
           A++I       P A  +  S   G+ +L V++                  E+++F     
Sbjct: 102 AFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGVENELFFRNNT 161

Query: 188 IMPLFGKSQKSPAEVVKAL 206
           +M LFG ++K   ++V+A+
Sbjct: 162 MM-LFGDAKKMTEQIVQAM 179


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.368 

Gapped
Lambda     K      H
   0.267   0.0718    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 994,386
Number of extensions: 46305
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 15
Length of query: 291
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 206
Effective length of database: 1,240,546
Effective search space: 255552476
Effective search space used: 255552476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.8 bits)