RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12836
(429 letters)
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 345 bits (887), Expect = e-118
Identities = 100/279 (35%), Positives = 134/279 (48%), Gaps = 41/279 (14%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
S + V++TGAN+G+G ARELA+R A VIMA RD K E A + + V R
Sbjct: 13 SFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-----AGQVEVR 67
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLT 258
+ DL S+R FA+ V +VLINNAG+ LT + E Q+G NH+GHF LT
Sbjct: 68 ELDLQDLSSVRRFADGV----SGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALT 123
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLN-SENSYDP 317
LLL +L R++ VSS+AH G IN EDLN Y P
Sbjct: 124 NLLLPRL----------------------TDRVVTVSSMAHWPGRINLEDLNWRSRRYSP 161
Query: 318 TQAYNQSKLANVLFTRELAKRLE--GTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375
AY+QSKLAN+LFT EL +RL G+ + A HPG +T++ S L ++
Sbjct: 162 WLAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASG---RKLGDALMS 218
Query: 376 PLVWLFIKSPRQGAQTIVYASLDP----SLENVSGKYFA 410
+ GA+ +YA+ S Y
Sbjct: 219 AATRVVATDADFGARQTLYAASQDLPGDSFVGPRFGYLG 257
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 281 bits (720), Expect = 4e-93
Identities = 73/309 (23%), Positives = 124/309 (40%), Gaps = 77/309 (24%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEVVLESKNKYVLC 197
S+ + +VTG N GIG AI R+L + V++ RD+ + + A ++ L+++
Sbjct: 1 SSGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQ--LQAEGLSPRF 58
Query: 198 RKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLT--EEKIELQLGVNHMGHF 255
+ D+ +SIRA + ++KE ++VL+NNAG++ T + E+ + N G
Sbjct: 59 HQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTR 118
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT----------IN 305
+ LL ++ R++NVSS+ R
Sbjct: 119 DVCTELLPLIKPQ--------------------GRVVNVSSIMSVRALKSCSPELQQKFR 158
Query: 306 KEDLNSEN-------------------SYDPTQAYNQSKLANVLFTRELAKRL----EGT 342
E + E P+ AY +K+ + +R A++L +G
Sbjct: 159 SETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGD 218
Query: 343 GITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVY-ASLDPSL 401
I +NA PG V TD+ KSP +GA+T VY A L P
Sbjct: 219 KILLNACCPGWVRTDMAGPK------------------ATKSPEEGAETPVYLALLPPDA 260
Query: 402 ENVSGKYFA 410
E G++ +
Sbjct: 261 EGPHGQFVS 269
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 234 bits (598), Expect = 2e-74
Identities = 70/344 (20%), Positives = 123/344 (35%), Gaps = 104/344 (30%)
Query: 132 AKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESK 191
+ T + + +VTG N GIG I ++L+ V++ CRD+ K +A ++ + S
Sbjct: 2 PETCPNTVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEK-LKNSN 60
Query: 192 NKYVLCRKCDLASQ-ESIRAFAEEVKKENKKINVLINNAGVSG----------------- 233
++ V+ + D+ ++ + A+ +K K+++L+NNAGV+G
Sbjct: 61 HENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGE 120
Query: 234 ---------------CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLI 278
T E E L +N+ G +T +L+ LQ
Sbjct: 121 DSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQL----------- 169
Query: 279 WYYVFQESAPSRIINVSSVAHKRGTINKED------------------------------ 308
S RI+NVSS ++ E
Sbjct: 170 -------SDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKEN 222
Query: 309 -LNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDS 367
+ + AY SK +TR LA ++ VN V PG+V T++
Sbjct: 223 LIETNGWPSFGAAYTTSKACLNAYTRVLANKIP--KFQVNCVCPGLVKTEMNYGI----- 275
Query: 368 WLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFAC 411
+ +GA+ +V +L P + SG ++ C
Sbjct: 276 -------------GNYTAEEGAEHVVRIALFPD-DGPSGFFYDC 305
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 148 bits (376), Expect = 4e-42
Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 52/261 (19%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
G+IV++TGA GIG+ A E AK K+K+++ + E+ + + V
Sbjct: 30 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAK--CKGLGAKVHTFVV 87
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLT 258
D +++E I + A++VK E +++L+NNAGV + + +IE VN + HF T
Sbjct: 88 DCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTT 147
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L + N I+ V+S A P
Sbjct: 148 KAFLPAMTKNNH------------------GHIVTVASAAGHVSV-------------PF 176
Query: 319 Q-AYNQSKLANVLFTRELA---KRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374
AY SK A V F + L L+ TG+ + P VNT +++ ST +
Sbjct: 177 LLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP-------STSLG 229
Query: 375 KPLVWLFIKSPRQGAQTIVYA 395
L P + +++
Sbjct: 230 PTL------EPEEVVNRLMHG 244
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 147 bits (374), Expect = 6e-42
Identities = 67/222 (30%), Positives = 101/222 (45%), Gaps = 24/222 (10%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
V+VTGAN GIG + ++L K K +I RD++K + + ++ +VL
Sbjct: 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS---IKDSRVHVL--PL 58
Query: 201 DLASQESIRAFAEEVKKE--NKKINVLINNAGVSGCRKMLTE---EKIELQLGVNHMGHF 255
+ +S+ F +V + + +++LINNAGV TE I QL VN
Sbjct: 59 TVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVV 118
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
LLT LL L+ S+ S L + + +I +SS G+I D S ++
Sbjct: 119 LLTQKLLPLLKNAASKESGDQL-------SVSRAAVITISSGL---GSI--TDNTSGSAQ 166
Query: 316 DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P AY SK A +F R LA L+ + V PG V T+
Sbjct: 167 FPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTN 208
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 149 bits (377), Expect = 1e-41
Identities = 55/268 (20%), Positives = 98/268 (36%), Gaps = 39/268 (14%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
G+ VTG G+G + R+L + KV +A D +KA + E V+ +
Sbjct: 7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQL 66
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLT 258
D+AS+E + A+EV+ +++L NNAGV+ + + + + + LGVN G
Sbjct: 67 DVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGV 126
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+ ++ + E ++N +S+A +
Sbjct: 127 TTFVPRMVERVKA------------GEQKGGHVVNTASMAAFLAA-------------GS 161
Query: 319 Q-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV---- 373
YN +K A + L L I V+ + PG+V + I L V
Sbjct: 162 PGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDIRPDALKGEVKPVD 221
Query: 374 ------LKPLVWLFIKSPRQGAQTIVYA 395
L + + P ++ A
Sbjct: 222 KTAVERLAGVHEFGM-EPDVIGARVIEA 248
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 146 bits (371), Expect = 5e-41
Identities = 43/225 (19%), Positives = 82/225 (36%), Gaps = 35/225 (15%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
G+ +VTG +GIG A A E A+R A+++++ D E+A L + C
Sbjct: 30 DGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNG--LRGQGFDAHGVVC 87
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLT 258
D+ + + A+E + ++V+ +NAG+ + + + + ++ G
Sbjct: 88 DVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAV 147
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L +L I +S A
Sbjct: 148 EAFLPRLLEQ-----------------GTGGHIAFTASFAGLVPN-------------AG 177
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS 362
Y +K V LA+ ++ GI V+ + P +V T ++ +S
Sbjct: 178 LGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLVSNS 222
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 142 bits (360), Expect = 8e-40
Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 27/223 (12%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAK---VIMACRDLDKCEKARKEVVLESKNKYVLCRK 199
+++TG N G+G + + L + CR+ ++ ++ L + + +
Sbjct: 22 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELED---LAKNHSNIHILE 78
Query: 200 CDLASQESIRAFAEEVKKE--NKKINVLINNAGVSGCRKMLTE---EKIELQLGVNHMGH 254
DL + ++ +++ ++ +NVL NNAG++ +T +++ L N +
Sbjct: 79 IDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVP 138
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
+L L L+ + + IIN+SS+ G+I N+
Sbjct: 139 IMLAKACLPLLKKAAKANESQPM-------GVGRAAIINMSSIL---GSI------QGNT 182
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
AY SK A T+ L+ L I ++HPG V TD
Sbjct: 183 DGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTD 225
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 141 bits (357), Expect = 1e-39
Identities = 43/268 (16%), Positives = 89/268 (33%), Gaps = 52/268 (19%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+IVTGA +G+G+A+ L +R +V M R + ++ + V+ D
Sbjct: 3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL-----GNAVIGIVAD 57
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
LA E + + ++++ AG + T E+I + N + L+
Sbjct: 58 LAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQ 117
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+ + + NV S A + G +
Sbjct: 118 QTVRLIGER-------------------GGVLANVLSSAAQVGK-------------ANE 145
Query: 320 A-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLV 378
+ Y SK F L L+ + + + ++P + ++ ++ + D
Sbjct: 146 SLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNTDHVDP----------- 194
Query: 379 WLFIKSPRQGAQTIVYASLDPSLENVSG 406
+P A ++ A S +V+
Sbjct: 195 -SGFMTPEDAAAYMLDALEARSSCHVTD 221
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 138 bits (351), Expect = 2e-38
Identities = 56/265 (21%), Positives = 91/265 (34%), Gaps = 46/265 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K VI A GIG +REL KR K + ++ A E+ + + D
Sbjct: 5 NKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVEN-PTALAELKAINPKVNITFHTYD 63
Query: 202 L-ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTML 260
+ + +++ + K +++LIN AG+ L + +IE + +N G T
Sbjct: 64 VTVPVAESKKLLKKIFDQLKTVDILINGAGI------LDDHQIERTIAINFTGLVNTTTA 117
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
+LD + I N+ SV
Sbjct: 118 ILDFWDKR---------------KGGPGGIIANICSVTGFNAI-------------HQVP 149
Query: 321 -YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH----SSYYDSWLSTVVLK 375
Y+ SK A V FT LAK TG+T +++PGI T ++ ++
Sbjct: 150 VYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSH 209
Query: 376 PLVWLFIKSPRQGAQTIVYASLDPS 400
P ++ Q Q V A
Sbjct: 210 PT-----QTSEQCGQNFVKAIEANK 229
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 138 bits (351), Expect = 2e-38
Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 33/222 (14%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
GK+ ++TG+++GIG AIA AK A +++ R +D+ +A + + + + VL
Sbjct: 6 SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVR-VLEVAV 64
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLT 258
D+A+ E + A E V+ ++L+NNAG ++ +EK + + M L
Sbjct: 65 DVATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLA 124
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L+ ++A II+ +S+ + +
Sbjct: 125 RGLVPGMRAR--GG----------------GAIIHNASICAVQPLWYE------------ 154
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
YN +K A ++F++ LA + I VN ++PG++ T
Sbjct: 155 PIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWI 196
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 136 bits (346), Expect = 1e-37
Identities = 59/242 (24%), Positives = 97/242 (40%), Gaps = 38/242 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G+I +VTG + GIG+ IA+ L + A+V + RD + C L + D
Sbjct: 29 GRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATR--LSAYGD-CQAIPAD 85
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQ----LGVNHMGHFLL 257
L+S+ R A+ + + + ++++L+NNAG S E + +N F
Sbjct: 86 LSSEAGARRLAQALGELSARLDILVNNAGTS--WGAALESYPVSGWEKVMQLNVTSVFSC 143
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
LL L+ + S P+R+IN+ SVA +
Sbjct: 144 IQQLLPLLRRSAS--------------AENPARVINIGSVAGISAMG-----------EQ 178
Query: 318 TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD----ILRHSSYYDSWLSTVV 373
AY SK A +R LAK L G I VN + PG + I ++ +++
Sbjct: 179 AYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRHIANDPQALEADSASIP 238
Query: 374 LK 375
+
Sbjct: 239 MG 240
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 134 bits (340), Expect = 5e-37
Identities = 48/270 (17%), Positives = 96/270 (35%), Gaps = 47/270 (17%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKY-VLCRK 199
+ + I+TGA+ GIG IA LA +V++ R EK E++ +K+ +
Sbjct: 6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLP 65
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLL 257
D+ +++ ++ +++L+N A + L + + +N + + +
Sbjct: 66 LDITDCTKADTEIKDIHQKYGAVDILVNAAAM-FMDGSLSEPVDNFRKIMEINVIAQYGI 124
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
+ + ++ Q++ I NV+S A K G
Sbjct: 125 LKTVTEIMKV----------------QKNG--YIFNVASRAAKYGF-------------A 153
Query: 318 TQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376
Y +K A + L + L GI V + PG VNTD+ + + + +++
Sbjct: 154 DGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDMAKKAG--TPFKDEEMIQ- 210
Query: 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSG 406
P TI +
Sbjct: 211 --------PDDLLNTIRCLLNLSENVCIKD 232
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 134 bits (339), Expect = 8e-37
Identities = 40/233 (17%), Positives = 86/233 (36%), Gaps = 44/233 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRK---AKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
+ ++TGA+ G G+A+A +LA+ + ++++ R + ++E+ + + V+
Sbjct: 6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLA 65
Query: 199 KCDLASQESIRAFAEEVKK----ENKKINVLINNAGV-----SGCRKMLTEEKIELQLGV 249
DL ++ ++ V++ E + +LINNA G + ++ +
Sbjct: 66 AADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWAL 125
Query: 250 NHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDL 309
N LT L+ Q ++N+SS+ +
Sbjct: 126 NLTSMLCLTSGTLNAFQD----------------SPGLSKTVVNISSLCALQPY------ 163
Query: 310 NSENSYDPTQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
Y K A + + LA E + V + PG ++ D+ +
Sbjct: 164 -------KGWGLYCAGKAARDMLYQVLA--AEEPSVRVLSYAPGPLDNDMQQL 207
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 134 bits (340), Expect = 1e-36
Identities = 55/263 (20%), Positives = 94/263 (35%), Gaps = 55/263 (20%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+GK VIVTGA+ GIG+ +A LAK A V++ R + +K LE
Sbjct: 27 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSH-CLELGAASAHYIAG 85
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIEL---QLGVNHMGHFLL 257
+ F + K +++LI N + L + I + VN + + +L
Sbjct: 86 TMEDMTFAEQFVAQAGKLMGGLDMLILNHITNT-SLNLFHDDIHHVRKSMEVNFLSYVVL 144
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
T+ L L+ Q + I+ VSS+A K P
Sbjct: 145 TVAALPMLK-----------------QSNG--SIVVVSSLAGKVAY-------------P 172
Query: 318 TQ-AYNQSKLANVLFTRELAKRLE----GTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372
AY+ SK A F + R E +++ G+++T+ +
Sbjct: 173 MVAAYSASKFALDGFFSSI--RKEYSVSRVNVSITLCVLGLIDTETAMKA---------- 220
Query: 373 VLKPLVWLFIKSPRQGAQTIVYA 395
+ +V + + A I+
Sbjct: 221 -VSGIVHMQAAPKEECALEIIKG 242
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 133 bits (338), Expect = 1e-36
Identities = 54/229 (23%), Positives = 83/229 (36%), Gaps = 51/229 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK I+TGA GIGK IA A A V+++ + D E ++ +CD
Sbjct: 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDE--IQQLGGQAFACRCD 68
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+ S++ + A A+ + K+++L+NNAG G K +N F L+
Sbjct: 69 ITSEQELSALADFAISKLGKVDILVNNAGGGG-PKPFDMPMADFRRAYELNVFSFFHLS- 126
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDLNSE 312
Q AP I+ ++S+A +
Sbjct: 127 ------------------------QLVAPEMEKNGGGVILTITSMAAENKN--------- 153
Query: 313 NSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y SK A R +A L I VN + PG + TD L+
Sbjct: 154 ----INMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALK 198
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 133 bits (338), Expect = 1e-36
Identities = 45/223 (20%), Positives = 85/223 (38%), Gaps = 38/223 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+V+++G +G +AR A++ A +++A R +++ E K+V + L D
Sbjct: 11 DKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQV--TDTGRRALSVGTD 68
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHFLLT 258
+ + +E K +++V+INNA K T E + + + G L
Sbjct: 69 ITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLI 128
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L+ + ++NV+S+ +
Sbjct: 129 QGFTPALEES-------------------KGAVVNVNSMVVRHSQ-------------AK 156
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y +K A + ++ LA L GI VN+V PG + L+
Sbjct: 157 YGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLK 199
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 133 bits (338), Expect = 1e-36
Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 37/223 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ +VT + GIG AIAR LA+ A V+++ R + ++ L+ + V C
Sbjct: 14 NKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVAT--LQGEGLSVTGTVCH 71
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHFLLT 258
+ E + +++L++NA V+ + TEE + L VN L+T
Sbjct: 72 VGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMT 131
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
++ +++ ++ VSSV P
Sbjct: 132 KAVVPEMEKRGG------------------GSVLIVSSVGAYHPF-------------PN 160
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
YN SK A + T+ LA L I VN + PG++ T+ +
Sbjct: 161 LGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQ 203
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 134 bits (339), Expect = 1e-36
Identities = 58/228 (25%), Positives = 92/228 (40%), Gaps = 41/228 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV-LESKNKYVLCRKC 200
K VI+TG++ GIG+ A A+ A V + R ++ E+ R+ ++ K V
Sbjct: 6 NKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVA 65
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSG---CRKMLTEEKIEL---QLGVNHMGH 254
D+ +++ K+ KI+VL+NNAG + T++ I++ L +N
Sbjct: 66 DVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAV 125
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS-VAHKRGTINKEDLNSEN 313
+T + L A+ I+NVSS VA +
Sbjct: 126 IEMTKKVKPHLVAS-------------------KGEIVNVSSIVAGPQA----------- 155
Query: 314 SYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
P Y +K A +TR A L GI VN+V PG+V T
Sbjct: 156 --QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTN 201
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 134 bits (339), Expect = 2e-36
Identities = 51/226 (22%), Positives = 85/226 (37%), Gaps = 39/226 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV-LESKNKYVLCRKC 200
GK VI+TG++ GIG++ A AK A+V + R+ D+ E+ +++++ + +
Sbjct: 26 GKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVA 85
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFL 256
D+ + KI++L+NNAG + E + +N
Sbjct: 86 DVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIE 145
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS-VAHKRGTINKEDLNSENSY 315
+T + L I+NVSS VA +
Sbjct: 146 MTQKTKEHLIKT-------------------KGEIVNVSSIVAGPQA------------- 173
Query: 316 DPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y +K A +TR A L G+ VN+V PG V T +
Sbjct: 174 HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMG 219
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 131 bits (333), Expect = 6e-36
Identities = 42/222 (18%), Positives = 78/222 (35%), Gaps = 34/222 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ +VTG ++GIG A L + A V RD ++ A + + CD
Sbjct: 8 EAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCD 67
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+ +RAFAE ++ ++L+NNAG T+E +L +
Sbjct: 68 VLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVR 127
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
L +L++ + I+ V+S+ + +P
Sbjct: 128 AFLPQLES--RAD----------------AAIVCVNSLLASQP-------------EPHM 156
Query: 320 A-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
+ ++ R +A G+ VN + G+V + R
Sbjct: 157 VATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWR 198
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 131 bits (332), Expect = 7e-36
Identities = 58/222 (26%), Positives = 82/222 (36%), Gaps = 41/222 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK IV G G+G A R L + A+V++ R+ + R+E V + D
Sbjct: 8 GKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHALRSD 62
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+A I + I++L NAGVS +E + Q VN G F
Sbjct: 63 IADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTV- 121
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
Q + +E I+ SSVA + G P
Sbjct: 122 ------QRLTP-----------LIREGG--SIVFTSSVADEGGH-------------PGM 149
Query: 320 A-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
+ Y+ SK A V F LA L GI VN+V PG ++T
Sbjct: 150 SVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKG 191
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 131 bits (333), Expect = 8e-36
Identities = 55/227 (24%), Positives = 81/227 (35%), Gaps = 51/227 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
KI ++TGA +GIG A A+ A+V + R D + A E+ + + D
Sbjct: 29 AKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI-----GGGAVGIQAD 83
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
A+ + E+VK E +I+VL NAG + TEE+ + N G
Sbjct: 84 SANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTV- 142
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAP-----SRIINVSSVAHKRGTINKEDLNSENS 314
Q++ P S ++ S A GT
Sbjct: 143 ------------------------QKALPLLARGSSVVLTGSTAGSTGT----------- 167
Query: 315 YDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
P + Y SK A F R L+ GI +N + PG T L
Sbjct: 168 --PAFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLV 212
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 131 bits (332), Expect = 8e-36
Identities = 56/279 (20%), Positives = 98/279 (35%), Gaps = 47/279 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+++VTG + GIGK+I L ++ + + E K++ + ++ D
Sbjct: 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVY--GVARSEAPLKKLKEKYGDR-FFYVVGD 58
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHFLLT 258
+ ++ K + KI+ L+ NAGV + + + +N L
Sbjct: 59 ITEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLV 118
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+ L +L+ ++ VSS A +
Sbjct: 119 GIALPELKKT-------------------NGNVVFVSSDACNMY-------------FSS 146
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH--SSYYDSWLSTVVLK 375
Y SK A F LA E + AV PGIV+TD+ + + S +S LK
Sbjct: 147 WGAYGSSKAALNHFAMTLAN--EERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLK 204
Query: 376 PLVWLF----IKSPRQGAQTIVYASLDPSLENVSGKYFA 410
L + A +L + V+G+Y +
Sbjct: 205 MFRGLKENNQLLDSSVPATVYAKLALHGIPDGVNGQYLS 243
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 131 bits (331), Expect = 1e-35
Identities = 56/225 (24%), Positives = 89/225 (39%), Gaps = 37/225 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLE-SKNKYVLCRKC 200
G++++VTGA GIG A AR A A V++ R + ++ ++
Sbjct: 14 GRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNL 73
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIEL---QLGVNHMGHFLL 257
+ A+ + R A V+ E +++ L++NA + G R L + E + VN F+L
Sbjct: 74 ENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFML 133
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
T LL L+ E A I SS ++G
Sbjct: 134 TRALLPLLKR----------------SEDA--SIAFTSSSVGRKGR-------------A 162
Query: 318 TQ-AYNQSKLANVLFTRELAKRLEG-TGITVNAVHPGIVNTDILR 360
AY SK A + LA LEG T + N+++PG T +
Sbjct: 163 NWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGMRA 207
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 131 bits (333), Expect = 1e-35
Identities = 51/228 (22%), Positives = 88/228 (38%), Gaps = 41/228 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV-LESKNKYVLCRKC 200
K+ I+TG++ GIG+A A A+ AKV + R ++ E+ R++++ + V
Sbjct: 6 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVA 65
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM------LTEEKIELQLGVNHMGH 254
D+ + + K+++L+NNAG + + E + L +N
Sbjct: 66 DVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSV 125
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH-KRGTINKEDLNSEN 313
LT + L + I+N+SS+A
Sbjct: 126 IALTKKAVPHLSST-------------------KGEIVNISSIASGLHA----------- 155
Query: 314 SYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
P Y+ +K A +TR A L GI VN++ PG+V T
Sbjct: 156 --TPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGS 201
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 130 bits (330), Expect = 2e-35
Identities = 61/226 (26%), Positives = 91/226 (40%), Gaps = 37/226 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G++ +VTGA+ GIG AIAR+L A+V++ RD++K +E + + CD
Sbjct: 29 GQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVERE--IVAAGGEAESHACD 86
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIE---LQLGVNHMGHFLLT 258
L+ ++I AFA V + + +VL+NNAGV L K + VN +LL
Sbjct: 87 LSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLL 146
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+A + IIN+SS+A K
Sbjct: 147 -------RAFAP-----------AMIAAKRGHIINISSLAGKNPV-------------AD 175
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363
A Y SK A+ L + V+ V PG V T+ S
Sbjct: 176 GAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVGLS 221
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 130 bits (329), Expect = 3e-35
Identities = 57/223 (25%), Positives = 97/223 (43%), Gaps = 36/223 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ ++TGA +G G+ +A+ AK AKV++ RD E+ E+ L D
Sbjct: 9 GKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI-----GDAALAVAAD 63
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRK---MLTEEKIELQLGVNHMGHFLLT 258
++ + + A E + K+++L+NNAG+ + ++ E+ + +GVN G +L+T
Sbjct: 64 ISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMT 123
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L+ + N ++ I+NV+S R P
Sbjct: 124 SKLIPHFKENGAK--------------GQECVILNVASTGAGRP-------------RPN 156
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
A YN +K V T+ LA L I V A++P T +L
Sbjct: 157 LAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLT 199
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 129 bits (327), Expect = 5e-35
Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 37/222 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VTGA GIG+A A L + AKV + +L+ + + + + + + L +CD
Sbjct: 7 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCD 66
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
+A Q+ +R +V ++++L+NNAGV+ E+ E L +N + T L
Sbjct: 67 VADQQQLRDTFRKVVDHFGRLDILVNNAGVN------NEKNWEKTLQINLVSVISGTYLG 120
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA- 320
LD + IIN+SS+A Q
Sbjct: 121 LDYMSKQNG---------------GEGGIIINMSSLAGLMP-------------VAQQPV 152
Query: 321 YNQSKLANVLFTRE--LAKRLEGTGITVNAVHPGIVNTDILR 360
Y SK V FTR LA L +G+ +NA+ PG VNT IL
Sbjct: 153 YCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILE 194
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 129 bits (327), Expect = 5e-35
Identities = 57/255 (22%), Positives = 90/255 (35%), Gaps = 42/255 (16%)
Query: 129 LGGAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVL 188
+ GA+ ++ S + K V+VTG GIG AI E A A + R+ + + +
Sbjct: 1 MAGAEQSQRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSK--W 58
Query: 189 ESKNKYVLCRKCDLASQESIRAFAEEVKKE-NKKINVLINNAGVSGCRKML---TEEKIE 244
+ K V CD + + + V K+++LINN G K T E
Sbjct: 59 QKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIR-SKPTLDYTAEDFS 117
Query: 245 LQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI 304
+ N + L+ L L+A S II +SS+A
Sbjct: 118 FHISTNLESAYHLSQLAHPLLKA--SGC----------------GNIIFMSSIAGVVSA- 158
Query: 305 NKEDLNSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI---LR 360
+ Y+ +K A R LA GI NAV P ++ T + +
Sbjct: 159 ------------SVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVY 206
Query: 361 HSSYYDSWLSTVVLK 375
+ +S L
Sbjct: 207 DDEFKKVVISRKPLG 221
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 129 bits (326), Expect = 7e-35
Identities = 61/253 (24%), Positives = 98/253 (38%), Gaps = 37/253 (14%)
Query: 130 GGAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLE 189
G Y E+ ++ IVTG IG A LA+ A+VI+A D KA ++ L
Sbjct: 1 GSHMYMEKLRLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVED--LR 58
Query: 190 SKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQ 246
+ V D+ + ES++ V ++ ++++L+ AG+ T+ + Q
Sbjct: 59 MEGHDVSSVVMDVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQ 118
Query: 247 LGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINK 306
+ +N G F QA + R E I+ + S++ G I
Sbjct: 119 VDINLNGMFRSC-------QA-VGRI----------MLEQKQGVIVAIGSMS---GLIV- 156
Query: 307 EDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--- 363
N AYN SK + R LA GI NAV P + T + R
Sbjct: 157 ------NRPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGMEKP 210
Query: 364 -YYDSWLSTVVLK 375
YD+W++ +
Sbjct: 211 ELYDAWIAGTPMG 223
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 128 bits (325), Expect = 9e-35
Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 35/223 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
++V++TG +G+G+A A LA AK+ + + E ++ V+ + + VL D
Sbjct: 13 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVAD 72
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIEL---QLGVNHMGHFLLT 258
++ + + A+ + +I+ NNAG+ G + + +N G FL
Sbjct: 73 VSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGL 132
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L + +E ++N +SV RG
Sbjct: 133 ------------EKVL------KIMREQGSGMVVNTASVGGIRG-------------IGN 161
Query: 319 Q-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Q Y +K V TR A GI +NA+ PG + T ++
Sbjct: 162 QSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVE 204
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 128 bits (325), Expect = 1e-34
Identities = 57/220 (25%), Positives = 90/220 (40%), Gaps = 37/220 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G +VTG + GIG AI ELA A+V R+ + ++ + K V CD
Sbjct: 21 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEI--WREKGLNVEGSVCD 78
Query: 202 LASQESIRAFAEEVKKENK-KINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLT 258
L S+ + V K+N+L+NNAGV ++ TE+ + +G N + L+
Sbjct: 79 LLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLS 138
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+ L+A S+ +I +SS+A P+
Sbjct: 139 QIAYPLLKA--SQNG----------------NVIFLSSIAGFSAL-------------PS 167
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
+ Y+ SK A T+ LA I VN+V PG++ T
Sbjct: 168 VSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTP 207
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 128 bits (324), Expect = 1e-34
Identities = 46/224 (20%), Positives = 84/224 (37%), Gaps = 35/224 (15%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+GK+ +VT ++G+G A A ELA+ A++++ R+ +K E A + V
Sbjct: 6 QGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAG 65
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGV--SGCRKMLTEEKIELQLGVNHMGHFLLT 258
D+ I E+ ++ ++L+ + G G L E + + +
Sbjct: 66 DIREPGDIDRLFEKA-RDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVG 124
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+++ + R++ + SV R
Sbjct: 125 RRAAEQMVEK--GW----------------GRMVYIGSVTLLRPW-------------QD 153
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
A N +L + R LA L G+TVNAV P ++ TD +R
Sbjct: 154 LALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRS 197
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 127 bits (322), Expect = 2e-34
Identities = 54/230 (23%), Positives = 85/230 (36%), Gaps = 51/230 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VTGA IG A A LA+ + + + + EKA + K CD
Sbjct: 7 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEAS--VREKGVEARSYVCD 64
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIE---LQLGVNHMGHFLLT 258
+ S+E++ + V ++ KI+ L NNAG G + + + L +N G F +
Sbjct: 65 VTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVL 124
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDLNS 311
+ + RI+N +S+A +G
Sbjct: 125 -------------------------KAVSRQMITQNYGRIVNTASMAGVKG--------- 150
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
P A Y SK A + T A L I VNA+ PG + +
Sbjct: 151 ----PPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMW 196
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 127 bits (322), Expect = 2e-34
Identities = 58/226 (25%), Positives = 87/226 (38%), Gaps = 51/226 (22%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
K+ +VTGA GIGKAIA L K V +A + + E + + + K D+
Sbjct: 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASE--INQAGGHAVAVKVDV 60
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTML 260
+ ++ + A E+ +K +V++NNAGV+ + T E ++ +N G
Sbjct: 61 SDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGI-- 118
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPS--------RIINVSSVAHKRGTINKEDLNSE 312
Q + + +IIN S A G
Sbjct: 119 -----------------------QAAVEAFKKEGHGGKIINACSQAGHVGN--------- 146
Query: 313 NSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P A Y+ SK A T+ A+ L GITVN PGIV T
Sbjct: 147 ----PELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTP 188
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 126 bits (320), Expect = 3e-34
Identities = 52/224 (23%), Positives = 79/224 (35%), Gaps = 47/224 (20%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
S +VTG + GIGKA+ L + K ++ +D + E + K++
Sbjct: 1 SNAMANYLVTGGSKGIGKAVVELLLQNKNHTVIN---IDIQQSFSAENL-----KFI--- 49
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFL 256
K DL Q+ I + +K N + + NAG+ + E I+ L +N
Sbjct: 50 KADLTKQQDITNVLDIIK--NVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIY 107
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
L + L+ + I+ S N
Sbjct: 108 FIKGLENNLKVG--------------------ASIVFNGSDQCFIAKPNSF--------- 138
Query: 317 PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AY SK A T+ LA L I VN V PG V+TD+ R
Sbjct: 139 ---AYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYR 179
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 127 bits (322), Expect = 3e-34
Identities = 59/270 (21%), Positives = 100/270 (37%), Gaps = 44/270 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
KI IVTGA +G+G+A+A LA V +A R LD ++ E+ + LC D
Sbjct: 28 KKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDD-----ALCVPTD 82
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIEL---QLGVNHMGHFLLT 258
+ +S+RA ++ +++VL NNAG + + + N G FL T
Sbjct: 83 VTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCT 142
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+ + + QE RIIN S++ P
Sbjct: 143 ------------QEAFRVMK----AQEPRGGRIINNGSISATSP-------------RPY 173
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH-SSYYDSWLSTVVLKP 376
A Y +K A T+ + I + G +T + + + ++ ++P
Sbjct: 174 SAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKMKAGVPQADLSIKVEP 233
Query: 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSG 406
++ A +VY + P NV
Sbjct: 234 VM-----DVAHVASAVVYMASLPLDANVQF 258
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 127 bits (322), Expect = 3e-34
Identities = 62/242 (25%), Positives = 91/242 (37%), Gaps = 54/242 (22%)
Query: 131 GAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLES 190
G+ G+ IVTG + GIG AIAR L K A V +A D+ + LE+
Sbjct: 1 GSHMAGIFDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAG--LEN 58
Query: 191 KNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLG 248
+ D+ + S+ A ++ ++L NAGVS R + T+E+ +
Sbjct: 59 G---GFAVEVDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFD 115
Query: 249 VNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPS--------RIINVSSVAHK 300
VN G FL Q + I+N +S+A K
Sbjct: 116 VNARGVFLAN-------------------------QIACRHFLASNTKGVIVNTASLAAK 150
Query: 301 RGTINKEDLNSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL 359
G P A Y+ SK A +T+ LA+ + I VN V PG V T +
Sbjct: 151 VGA-------------PLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQ 197
Query: 360 RH 361
Sbjct: 198 ER 199
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 127 bits (321), Expect = 4e-34
Identities = 55/231 (23%), Positives = 90/231 (38%), Gaps = 50/231 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK ++TGA GIG IAR A A+++++ RD+ + + AR+ + E V D
Sbjct: 20 GKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALG-EQFGTDVHTVAID 78
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
LA ++ A + ++VL+NNAG+S + ++ + + + VN LL
Sbjct: 79 LAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLA- 137
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS--------RIINVSSVAHKRGTINKEDLNS 311
+ II V+S A
Sbjct: 138 ------------------------SAVGKAMVAAGEGGAIITVASAAALAPL-------- 165
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
P Y SK V+ T+ LA+ L GI N+V P +V T++ +
Sbjct: 166 -----PDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQR 211
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 126 bits (320), Expect = 4e-34
Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 39/222 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRK 199
K+ +VTG GIG+ I+ +LA + +A DL + E+ E + +E+ ++ +
Sbjct: 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVA--DLPQQEEQAAETIKLIEAADQKAVFVG 59
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLL 257
D+ + + + +E ++ +VL+NNAG++ + +L TEE ++ VN F
Sbjct: 60 LDVTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFG 119
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPS-RIINVSSVAHKRGTINKEDLNSENSYD 316
QA SR F E +IIN +S+A +G
Sbjct: 120 I-------QA-ASRK----------FDELGVKGKIINAASIAAIQGF------------- 148
Query: 317 PTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P + Y+ +K A T+ A+ L G TVNA PGIV T
Sbjct: 149 PILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTG 190
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 126 bits (320), Expect = 4e-34
Identities = 61/279 (21%), Positives = 108/279 (38%), Gaps = 45/279 (16%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
G++ +VTGA+ GIG+ IA +L K A V + R LD +E +S + C
Sbjct: 4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEA--QSLGGQCVPVVC 61
Query: 201 DLASQESIRAFAEEVKKENK-KINVLINNAGVSGCRKMLT---------EEKIELQLGVN 250
D + + +R+ E+V +E + +++VL+NNA + T + V
Sbjct: 62 DSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVG 121
Query: 251 HMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLN 310
GH+ ++ + I+ +SS +
Sbjct: 122 LRGHYFCSVYGARLMVPAGQ------------------GLIVVISSPGSLQ--------- 154
Query: 311 SENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLS 370
Y Y K A + A L G++ ++ PGIV T++L+ + L
Sbjct: 155 ----YMFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQ 210
Query: 371 TVVLKPLVWLFIK--SPRQGAQTIVYASLDPSLENVSGK 407
VLK F + + +V + DP++ ++SGK
Sbjct: 211 DPVLKQFKSAFSSAETTELSGKCVVALATDPNILSLSGK 249
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 126 bits (319), Expect = 5e-34
Identities = 56/221 (25%), Positives = 84/221 (38%), Gaps = 35/221 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ IVTGA GIG+AIA AK A V++ + E + + +C+
Sbjct: 12 DAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAA--IRQAGGKAIGLECN 69
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM-LTEEKIELQLGVNHMGHFLLTML 260
+ ++ A + + KI VL+NNAG G + + E +N F L+ L
Sbjct: 70 VTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQL 129
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
+Q I+N+SS+A + A
Sbjct: 130 AAPHMQKA--GG----------------GAILNISSMAGENTN-------------VRMA 158
Query: 321 -YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y SK A TR +A + GI VNA+ PG + TD L
Sbjct: 159 SYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALA 199
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 126 bits (319), Expect = 6e-34
Identities = 53/231 (22%), Positives = 90/231 (38%), Gaps = 54/231 (23%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ IVTG+ GIG+A A LA+ A V++A + + E K+ + + + D
Sbjct: 9 NKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQ--IVADGGTAISVAVD 66
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM-----LTEEKIELQLGVNHMGHFL 256
++ ES +A A+ E I+ L+NNA + G K+ + E + + VN G
Sbjct: 67 VSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALW 126
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDL 309
T + I+N SS A +
Sbjct: 127 CT-------------------------RAVYKKMTKRGGGAIVNQSSTAAWLYSNY---- 157
Query: 310 NSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y +K+ T++L++ L G I +NA+ PG ++T+ R
Sbjct: 158 -----------YGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANR 197
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 126 bits (319), Expect = 7e-34
Identities = 48/224 (21%), Positives = 85/224 (37%), Gaps = 37/224 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVVLESKNKYVLCRKC 200
K +VTG++ G+GKA A LA+ +++ R + +E +E VL K
Sbjct: 4 NKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEE--IEKLGVKVLVVKA 61
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLT 258
++ I+ +++ + +++V +NNA R ++ E + + +N
Sbjct: 62 NVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCA 121
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
Q +++ I+++SS+ R
Sbjct: 122 -------QEAAKL-----------MEKNGGGHIVSISSLGSIRYL-------------EN 150
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
SK A TR LA L I VNAV G ++TD L+H
Sbjct: 151 YTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKH 194
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 126 bits (319), Expect = 1e-33
Identities = 41/231 (17%), Positives = 84/231 (36%), Gaps = 50/231 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV-LESKNKYVLCRKC 200
+ +VTG +GIGK +A L A V++ R+ DK A +E+ L + +
Sbjct: 11 DRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPT 70
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIEL---QLGVNHMGHFLL 257
D+ +++ + V + +++ +++ AG S +T+ E + +N G +
Sbjct: 71 DITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYV 130
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDLN 310
+ +A + +SS+A
Sbjct: 131 L-------------------------KHAAREMVRGGGGSFVGISSIAASNT-------- 157
Query: 311 SENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y +K A + A L + + VN++ PG++ TD++
Sbjct: 158 -----HRWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVA 203
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 125 bits (317), Expect = 1e-33
Identities = 52/227 (22%), Positives = 87/227 (38%), Gaps = 54/227 (23%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK ++TG+ GIG+A A + A V +A D+++ +A E + V + D
Sbjct: 8 GKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAE--IGPAAYAV---QMD 62
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+ Q+SI A + +++L+NNA + ++ T E E +N G
Sbjct: 63 VTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTL- 121
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS--------RIINVSSVAHKRGTINKEDLNS 311
Q +A +IIN++S A +RG
Sbjct: 122 ------------------------QAAARQMIAQGRGGKIINMASQAGRRGE-------- 149
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
A Y +K A + T+ L I VNA+ PG+V+ +
Sbjct: 150 -----ALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGE 191
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 125 bits (317), Expect = 1e-33
Identities = 57/220 (25%), Positives = 85/220 (38%), Gaps = 37/220 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G +VTG + GIG I ELA A V R+ + + SK V CD
Sbjct: 9 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQ--WRSKGFKVEASVCD 66
Query: 202 LASQESIRAFAEEVKKENK-KINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLT 258
L+S+ + V K+N+L+NNAG+ ++ T E L + +N + L+
Sbjct: 67 LSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLS 126
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+L L+A S ++ +SSV+ P
Sbjct: 127 VLAHPFLKA--SERG----------------NVVFISSVSGALA-------------VPY 155
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
+A Y +K A TR LA I VN V PG++ T
Sbjct: 156 EAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATS 195
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 125 bits (316), Expect = 2e-33
Identities = 57/228 (25%), Positives = 83/228 (36%), Gaps = 52/228 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRK 199
+ ++V GA IG+A A A+ A V++ E A V +E + L K
Sbjct: 8 NRTIVVAGAGRDIGRACAIRFAQEGANVVLT--YNGAAEGAA-TAVAEIEKLGRSALAIK 64
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHFL 256
DL + + A + +I+ L++ AG RK + E L VN FL
Sbjct: 65 ADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFL 124
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAP-----SRIINVSSVAHKRGTINKEDLNS 311
+ + P I+ SS A + G
Sbjct: 125 TA-------------------------KTALPKMAKGGAIVTFSSQAGRDGGG------- 152
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
P Y SK A + FTR LAK + G I VNAV PG+++T
Sbjct: 153 -----PGALAYATSKGAVMTFTRGLAKEV-GPKIRVNAVCPGMISTTF 194
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 125 bits (315), Expect = 2e-33
Identities = 39/229 (17%), Positives = 71/229 (31%), Gaps = 38/229 (16%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
+ R V V GA IG IA++ A V R+ +K E +E+ ++ R
Sbjct: 4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAE--IEAAGGRIVAR 61
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFL 256
D +++ + AF + V I N G + +L T+ + F+
Sbjct: 62 SLDARNEDEVTAFLNAADAHA-PLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFV 120
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
+ + +I + A RG
Sbjct: 121 SG-------RESARL-----------MLAHGQGKIFFTGATASLRGG------------- 149
Query: 317 PTQA-YNQSKLANVLFTRELAKRLEGTGITV-NAVHPGIVNTDILRHSS 363
A + +K + +A+ L I V + + V+T +R
Sbjct: 150 SGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRERR 198
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 125 bits (316), Expect = 2e-33
Identities = 38/234 (16%), Positives = 86/234 (36%), Gaps = 49/234 (20%)
Query: 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKN 192
T+ + K++++ G +G A+ A +++ + A ++ LE +
Sbjct: 4 TKYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTA-NKLKDELEDQG 62
Query: 193 KYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVN 250
V + DL+++E + + +KE K+++ IN G + ++ +E + + +N
Sbjct: 63 AKVALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTIN 122
Query: 251 HMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAP-----SRIINVSSVAHKRGTIN 305
+ + +++A II +++ T
Sbjct: 123 NKVAYFFI-------------------------KQAAKHMNPNGHIITIATSLLAAYT-- 155
Query: 306 KEDLNSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
+ Y +K +TR +K L I+VNA+ PG ++T
Sbjct: 156 -----------GFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSF 198
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 125 bits (316), Expect = 2e-33
Identities = 55/248 (22%), Positives = 93/248 (37%), Gaps = 40/248 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRK 199
GK+ +VTG+ GIG A+A L + AKV++ K ++VV +++ + K
Sbjct: 18 GKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYA---NSTKDAEKVVSEIKALGSDAIAIK 74
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLL 257
D+ I ++ +++ ++N+GV + +TEE+ + +N G F +
Sbjct: 75 ADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFV 134
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
+ E RI+ SS K ++ P
Sbjct: 135 A-------REAYRH-----------LTEG--GRIVLTSSNTSKDFSV------------P 162
Query: 318 TQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376
+ Y+ SK A F R +K ITVNAV PG TD+ S++ T
Sbjct: 163 KHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAE 222
Query: 377 LVWLFIKS 384
Sbjct: 223 QRQQMAAH 230
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 124 bits (314), Expect = 2e-33
Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 36/227 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ ++TGA+ GIG+AIAR LA+ + + R +D+ EK E++ E + V D
Sbjct: 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVE-VFYHHLD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
++ ES+ F+++V + ++V++ NAG+ +++ L+EE+ + VN +G +
Sbjct: 61 VSKAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLK 120
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
LD L+ ++ S V+ +
Sbjct: 121 AFLDSLKRTGGLA------------------LVTTSDVSAR-------------LIPYGG 149
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD 366
Y +K A R ++E + + PG V+T
Sbjct: 150 GYVSTKWAARALVRTF--QIENPDVRFFELRPGAVDTYFGGSKPGKP 194
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 125 bits (317), Expect = 2e-33
Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 40/221 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRK 199
GK+ +VTGA GIG+ +A EL +R KVI+ ++ +EVV ++ C K
Sbjct: 29 GKVALVTGAGRGIGREMAMELGRRGCKVIVNYA---NSTESAEEVVAAIKKNGSDAACVK 85
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLL 257
++ E I EE K K++++ +N+GV + +T E+ + +N G F +
Sbjct: 86 ANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFV 145
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
+ + R+I + S+ + + P
Sbjct: 146 A-------REAYKH-----------LEIG--GRLILMGSITGQAKAV------------P 173
Query: 318 TQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
A Y+ SK A F R +A + ITVN V PG + TD
Sbjct: 174 KHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTD 214
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 125 bits (316), Expect = 2e-33
Identities = 61/240 (25%), Positives = 96/240 (40%), Gaps = 31/240 (12%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K +IVTG N GIG A R +A A V + R + ++V + +CD
Sbjct: 14 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVG-KEFGVKTKAYQCD 72
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+++ + + +++ + I+ LI NAGVS + T E VN G F
Sbjct: 73 VSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTC- 131
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS-RIINVSSVAHKRGTINKEDLNSENSYDPT 318
+A +++ ++ + I+ SS++ I + + + T
Sbjct: 132 ------RA-VAK----------LWLQKQQKGSIVVTSSMS---SQIINQSSLNGS---LT 168
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--YYDSWLSTVVLK 375
Q YN SK A + LA GI VNA+ PG VNTD H D S + L
Sbjct: 169 QVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNIPLN 228
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 125 bits (316), Expect = 2e-33
Identities = 64/226 (28%), Positives = 92/226 (40%), Gaps = 36/226 (15%)
Query: 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIM-ACRDLDKCEKARKEVVLESKNKYVL 196
T + IVTG GIG IAR LA + + D + E L V+
Sbjct: 25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAE--LSGLGARVI 82
Query: 197 CRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRK----MLTEEKIELQLGVNHM 252
+ DLA S +A + V E +I+ L+NNAG++ + L E + +GVN
Sbjct: 83 FLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLR 142
Query: 253 GHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSE 312
G T +L + A+ +R S IIN++SV+
Sbjct: 143 GTVFFTQAVLKAMLASDARAS---------------RSIINITSVSAVMT---------- 177
Query: 313 NSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P + Y SK F++ LA RL TGI V V PGI+ +D
Sbjct: 178 ---SPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSD 220
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 124 bits (315), Expect = 3e-33
Identities = 53/220 (24%), Positives = 88/220 (40%), Gaps = 38/220 (17%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+GK +VTG+ GIGKAIA L A V++ R + + KE+ + + +
Sbjct: 9 KGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVA 68
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLT 258
DL +++ + E+ K+++LINN G+ + +E VN M LT
Sbjct: 69 DLGTEQGCQDVIEKY----PKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLT 124
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L K+ + R+I ++S A
Sbjct: 125 RSYLKKMIER--KE----------------GRVIFIASEAAIMP-------------SQE 153
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
A Y+ +K + +R LA+ GT +TVN + PG T+
Sbjct: 154 MAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTE 193
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 124 bits (313), Expect = 3e-33
Identities = 57/225 (25%), Positives = 92/225 (40%), Gaps = 38/225 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
++ IVTGA++G G AIA R +V + E+ + +K VL + D
Sbjct: 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADK-VLRVRAD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM-----LTEEKIELQLGVNHMGHFL 256
+A + + A ++ I+VL+NNAG++G + E+ + + VN G FL
Sbjct: 61 VADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFL 120
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
R L I+N++SVA
Sbjct: 121 GC------------RAVL------PHMLLQGAGVIVNIASVASLVA-------------F 149
Query: 317 PTQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
P + AY SK A + T+ +A G+GI NAV PG++ T + +
Sbjct: 150 PGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQ 194
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 124 bits (315), Expect = 4e-33
Identities = 61/238 (25%), Positives = 99/238 (41%), Gaps = 34/238 (14%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK ++TGA+TGIGK +A A+ A+V +A R D + E + L +CD
Sbjct: 32 GKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADE--IAGVGGKALPIRCD 89
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+ + +R +++ E I++ + NAG+ + ML E+ + N G FL
Sbjct: 90 VTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTA- 148
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS-RIINVSSVAHKRGTINKEDLNSENSYDPT 318
QA +R + II +S++ G I N
Sbjct: 149 ------QA-AAR----------AMVDQGLGGTIITTASMS---GHII-------NIPQQV 181
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH-SSYYDSWLSTVVLK 375
Y SK A V T+ +A L I VN+V PG + T+++ + Y+ W + L
Sbjct: 182 SHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPLADYHALWEPKIPLG 239
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 124 bits (313), Expect = 4e-33
Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 52/229 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ ++TG GIG+AIA A A + +A DL +A + + + VL KCD
Sbjct: 7 DKLAVITGGANGIGRAIAERFAVEGADIAIA--DLVPAPEAEAA--IRNLGRRVLTVKCD 62
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
++ + AF ++V + ++L+NNAG+ T E+ + +N FL+
Sbjct: 63 VSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMA- 121
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDLNSE 312
+ P RIIN++S +
Sbjct: 122 ------------------------KAFVPGMKRNGWGRIINLTSTTYWLKI--------- 148
Query: 313 NSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y +K AN+ FTR LA L GITVNA+ P +V T
Sbjct: 149 ----EAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTE 193
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 125 bits (315), Expect = 4e-33
Identities = 56/221 (25%), Positives = 89/221 (40%), Gaps = 40/221 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRK 199
GK+ + TGA GIG+ IA EL +R A V++ KA +EVV L+ + +
Sbjct: 21 GKVALTTGAGRGIGRGIAIELGRRGASVVVNYG---SSSKAAEEVVAELKKLGAQGVAIQ 77
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLL 257
D++ + A ++ ++ +++N+G+ +T+E + +N G F +
Sbjct: 78 ADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFV 137
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
Q L + RII SS+A + + P
Sbjct: 138 A-------QQGLKH-----------CRRG--GRIILTSSIA------------AVMTGIP 165
Query: 318 TQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
A Y SK A F R A G+TVN + PG V TD
Sbjct: 166 NHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTD 206
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 124 bits (313), Expect = 4e-33
Identities = 59/222 (26%), Positives = 90/222 (40%), Gaps = 35/222 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+VIVTGA +GIG+AIA++ A + V+ D+ + +E L K VL K D
Sbjct: 7 NKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQE--LRGMGKEVLGVKAD 64
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIEL---QLGVNHMGHFLLT 258
++ ++ + F + +I+VL NNAG+ + E EL L VN F +
Sbjct: 65 VSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSS 124
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
R + + + I+N +S+A RG
Sbjct: 125 ------------RAVI------PIMLKQGKGVIVNTASIAGIRGGFA------------G 154
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y +K + TR +A GI AV PG V T+I
Sbjct: 155 APYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGL 196
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 124 bits (314), Expect = 5e-33
Identities = 50/221 (22%), Positives = 86/221 (38%), Gaps = 32/221 (14%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K ++TG+ +GIG AIAR LAK A +++ + + V + VL D
Sbjct: 25 TKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPAD 84
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
+ I V ++L+NNAGV K+ E+ + + VN F
Sbjct: 85 MTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIR 144
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+ ++ + RIIN++S + K
Sbjct: 145 GAIPPMKKK--GW----------------GRIINIASAHGLVASPFKS------------ 174
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AY +K + T+ +A + +G+TVN++ PG V T ++
Sbjct: 175 AYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVE 215
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 123 bits (311), Expect = 6e-33
Identities = 58/240 (24%), Positives = 100/240 (41%), Gaps = 36/240 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ I+TG GIG AIA + + AKV++ R D EKA K V + ++ + D
Sbjct: 6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFF---QHD 62
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
+ ++ + +K ++ L+NNAG++ + + T + L VN G F T
Sbjct: 63 SSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTR 122
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
L + +++ + IIN+SS+ G +
Sbjct: 123 LGIQRMKNK-----------------GLGASIINMSSIEGFVGDPS------------LG 153
Query: 320 AYNQSKLANVLFTRELAKRL--EGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPL 377
AYN SK A + ++ A + + VN VHPG + T ++ + +S P+
Sbjct: 154 AYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPM 213
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 123 bits (312), Expect = 7e-33
Identities = 57/223 (25%), Positives = 91/223 (40%), Gaps = 36/223 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKC 200
GK+V++TG++TG+GK++A A KAKV++ R D+ +E+ + + K
Sbjct: 7 GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEI--KKVGGEAIAVKG 64
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLT 258
D+ + + + KE K++V+INNAG+ + + N G FL +
Sbjct: 65 DVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGS 124
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
R ++ + + +IN+SSV K P
Sbjct: 125 ------------REAIKYFV-----ENDIKGTVINMSSVHEKIPW-------------PL 154
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y SK L T LA GI VN + PG +NT I
Sbjct: 155 FVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINA 197
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 123 bits (311), Expect = 9e-33
Identities = 35/236 (14%), Positives = 76/236 (32%), Gaps = 41/236 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+++TGA+ +G A L + +VI++ R V E + + D
Sbjct: 27 SAPILITGASQRVGLHCALRLLEHGHRVIISYRT-------EHASVTELRQAGAVALYGD 79
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML-TEEKIELQLGVNHMGHFLLTML 260
+ + I AF + +K + + +++NA + V+ + +L+
Sbjct: 80 FSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLIN-- 137
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
S + I+++S ++G+
Sbjct: 138 -----LH-CEPL----------LTASEVADIVHISDDVTRKGS-------------SKHI 168
Query: 321 -YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375
Y +K T A R + VN + P ++ ++Y + L+ L
Sbjct: 169 AYCATKAGLESLTLSFAARF-APLVKVNGIAPALLMFQPKDDAAYRANALAKSALG 223
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 123 bits (312), Expect = 9e-33
Identities = 64/277 (23%), Positives = 101/277 (36%), Gaps = 40/277 (14%)
Query: 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKY 194
+ S G+I +VTG TG+G+ IA+ L+ V++ R D + A E+ + N
Sbjct: 26 QGKGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNI- 84
Query: 195 VLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIEL---QLGVNH 251
V CD+ + + A V+ E ++++L+NNAG + L E E + N
Sbjct: 85 VRAVVCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANL 144
Query: 252 MGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
G FL T ++A R RIIN S++ +
Sbjct: 145 TGAFLCTQHAFRMMKAQTPRG----------------GRIINNGSISAQTP--------- 179
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW-L 369
P A Y +K A T+ A I + G TD+ S
Sbjct: 180 ----RPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTARMSTGVLQAN 235
Query: 370 STVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSG 406
V +P + A+ +VY + P NV
Sbjct: 236 GEVAAEPTI-----PIEHIAEAVVYMASLPLSANVLT 267
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 122 bits (309), Expect = 1e-32
Identities = 51/226 (22%), Positives = 79/226 (34%), Gaps = 40/226 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRK 199
GK V++TG++ GIG A AR A+ AKV + R E + + +
Sbjct: 7 GKRVLITGSSQGIGLATARLFARAGAKVGLHGRKA---PANIDETIASMRADGGDAAFFA 63
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHFL 256
DLA+ E+ + +E + I+VLINNAG RK L + + + N +
Sbjct: 64 ADLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVM 123
Query: 257 LT---MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSEN 313
T + L + S +I+ S+A G
Sbjct: 124 TTKFALPHLAAAAKASGQT----------------SAVISTGSIAGHTG-------GG-- 158
Query: 314 SYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
P Y +K + G+ N V PG V+T
Sbjct: 159 ---PGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAF 201
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 123 bits (310), Expect = 2e-32
Identities = 57/229 (24%), Positives = 87/229 (37%), Gaps = 41/229 (17%)
Query: 134 YTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESK 191
Y + K+ IVTGA+ GIG AIA LA V++ A +EV +E+
Sbjct: 19 YFQSMMETNKVAIVTGASRGIGAAIAARLASDGFTVVINYA---GKAAAAEEVAGKIEAA 75
Query: 192 NKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGV 249
L + D++ ++R ++ ++VL+NNAG+ + + + + V
Sbjct: 76 GGKALTAQADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAV 135
Query: 250 NHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDL 309
N G F + R + RIIN+S+
Sbjct: 136 NLKGTFNTL-------REAAQR-----------LRVG--GRIINMSTSQVGLLH------ 169
Query: 310 NSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P+ Y +K T L+K L G ITVNAV PG TD
Sbjct: 170 -------PSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATD 211
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 123 bits (310), Expect = 2e-32
Identities = 60/223 (26%), Positives = 86/223 (38%), Gaps = 36/223 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ VTG ++GIG A+AR LA R V RD A L + V CD
Sbjct: 24 PQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDG--LRAAGHDVDGSSCD 81
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLT 258
+ S + + A + I +L+N+AG +G + + L N G F +T
Sbjct: 82 VTSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETADL-DDALWADVLDTNLTGVFRVT 140
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+L + + RI+N++S K+G
Sbjct: 141 REVLRAGGMREAGW----------------GRIVNIASTGGKQGV-------------MY 171
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
A Y SK V FT+ + L TGITVNAV PG V T +
Sbjct: 172 AAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAE 214
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 122 bits (309), Expect = 2e-32
Identities = 51/240 (21%), Positives = 93/240 (38%), Gaps = 37/240 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ VTG++ GIG A+A A+ A V + EKA ++ + KC+
Sbjct: 34 GKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHL--QKTYGVHSKAYKCN 91
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCR----KMLTEEKIELQLGVNHMGHFLL 257
++ +S+ + +K+ I+V + NAGV+ + + + + V+ G +
Sbjct: 92 ISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYC 151
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
+ + + +F+++ +I SS++ G I N
Sbjct: 152 S-------HN-IGK----------IFKKNGKGSLIITSSIS---GKIV-------NIPQL 183
Query: 318 TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--YYDSWLSTVVLK 375
YN +K A + LA VN + PG ++TDI +S W L
Sbjct: 184 QAPYNTAKAACTHLAKSLAIEW-APFARVNTISPGYIDTDITDFASKDMKAKWWQLTPLG 242
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 122 bits (309), Expect = 2e-32
Identities = 60/236 (25%), Positives = 97/236 (41%), Gaps = 36/236 (15%)
Query: 129 LGGAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVV 187
LG ++ + +V+VTG + GIG A+ R A++ +V + + + + +
Sbjct: 13 LGTENLYFQSMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAI- 71
Query: 188 LESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIE 244
+ D+ + I A V ++ +++ L+NNAG+ + + + E+IE
Sbjct: 72 -TESGGEAVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIE 130
Query: 245 LQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI 304
L VN G L + R S I+NVSS+A G+
Sbjct: 131 RMLRVNVTGSILCA-------AEAVRRMSRLY--------SGQGGAIVNVSSMAAILGS- 174
Query: 305 NKEDLNSENSYDPTQA--YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
TQ Y SK A FT LA+ + GI VNAV PGI+ TD+
Sbjct: 175 ------------ATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDL 218
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 121 bits (307), Expect = 3e-32
Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 36/222 (16%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+ K+VI+TG ++G+GK +A AK A+V++ R +K E+A+ E +E +L +
Sbjct: 5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLE--IEQFPGQILTVQM 62
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVS-GCRKM-LTEEKIELQLGVNHMGHFLLT 258
D+ + + I+ E++ ++ +I++LINNA + C L+ + + G F +
Sbjct: 63 DVRNTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCS 122
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
QA + +Y + ++ IIN+ + P
Sbjct: 123 -------QA-IGKYWI---------EKGIKGNIINMVATYAWDAG-------------PG 152
Query: 319 QA-YNQSKLANVLFTRELAKRL-EGTGITVNAVHPGIVNTDI 358
+K + T+ LA GI VNA+ PG +
Sbjct: 153 VIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTG 194
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 122 bits (308), Expect = 3e-32
Identities = 47/230 (20%), Positives = 80/230 (34%), Gaps = 46/230 (20%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G++ ++TG +G+G+A+ A+V + + ++ + + D
Sbjct: 5 GEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH-----GGNAVGVVGD 59
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRK---MLTEEKIELQ----LGVNHMGH 254
+ S + + AE KI+ LI NAG+ L E+KI+ VN G+
Sbjct: 60 VRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGY 119
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
L L ++ ++ S A
Sbjct: 120 IHAVKACLPALVSS-------------------RGSVVFTISNAGFYPN----------- 149
Query: 315 YDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363
Y +K A V R++A L + VN V PG +NTD+ SS
Sbjct: 150 --GGGPLYTATKHAVVGLVRQMAFEL-APHVRVNGVAPGGMNTDLRGPSS 196
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 121 bits (307), Expect = 3e-32
Identities = 51/241 (21%), Positives = 87/241 (36%), Gaps = 52/241 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK +VTG+ G+G A A LA A+VI+ ++ L K D
Sbjct: 9 GKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDT--LTRKGYDAHGVAFD 66
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+ + +I A ++ E +++LINNAG+ + M+ E + + N FL++
Sbjct: 67 VTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVS- 125
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS--------RIINVSSVAHKRGTINKEDLNS 311
+ +A +IIN+ S+ +
Sbjct: 126 ------------------------RSAAKRMIARNSGGKIINIGSLTSQAARPT------ 155
Query: 312 ENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI---LRHSSYYDSW 368
Y +K + T +A I NA+ PG + TD+ L +DSW
Sbjct: 156 ------VAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIEDKQFDSW 209
Query: 369 L 369
+
Sbjct: 210 V 210
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 121 bits (307), Expect = 4e-32
Identities = 54/222 (24%), Positives = 81/222 (36%), Gaps = 47/222 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VTGA GIG A+ L A+V +A R + L D
Sbjct: 28 GKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAAD-------------LHLPGD 74
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
L V ++++++NNAGV ++ T+ L LGVN F +
Sbjct: 75 LREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRIC- 133
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
R ++ + + I+NV+S R P
Sbjct: 134 -----------RAAIPLMA------AAGGGAIVNVASCWGLRP-------------GPGH 163
Query: 320 A-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
A Y +K A T+ + GI +NAV P VNT +LR
Sbjct: 164 ALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLR 205
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 121 bits (306), Expect = 4e-32
Identities = 49/222 (22%), Positives = 87/222 (39%), Gaps = 37/222 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK VI+TG G+G AR+ A+V++A ++ +E L +Y D
Sbjct: 5 GKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARE--LGDAARYQ---HLD 59
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
+ +E + ++E ++ L+NNAG+S + + E+ + +N G F+
Sbjct: 60 VTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGM- 118
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+ + + ++ I+N+SS A G T
Sbjct: 119 -----------KTVIPAMK------DAGGGSIVNISSAAGLMGLAL------------TS 149
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
+Y SK ++ A L I VN+VHPG+ T +
Sbjct: 150 SYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAE 191
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 121 bits (306), Expect = 5e-32
Identities = 57/222 (25%), Positives = 83/222 (37%), Gaps = 42/222 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK V+VTG GIG+AIA+ A+ A V + + KEV + + D
Sbjct: 6 GKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-----KEVAEAIGGAFF---QVD 57
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
L + F EE +++VL+NNA ++ L + L VN L+
Sbjct: 58 LEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLS- 116
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+ ++ I+NV+SV +
Sbjct: 117 -----------ALAA------REMRKVGGGAIVNVASVQGLFA-------------EQEN 146
Query: 320 -AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AYN SK V TR LA L I VNAV PG + T+ +
Sbjct: 147 AAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVL 188
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 121 bits (307), Expect = 5e-32
Identities = 64/223 (28%), Positives = 89/223 (39%), Gaps = 36/223 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
++ +VTGA +GIG IAR L K +V + R + KE L R CD
Sbjct: 22 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKE--LREAGVEADGRTCD 79
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLT 258
+ S I A V + ++VL+NNAG G ++ +E + N G F +T
Sbjct: 80 VRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAEL-ADELWLDVVETNLTGVFRVT 138
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+L RI+N++S K+G
Sbjct: 139 KQVLKAGGMLERGT----------------GRIVNIASTGGKQG-------------VVH 169
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
A Y+ SK V FT+ L L TGITVNAV PG V T +
Sbjct: 170 AAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAA 212
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 121 bits (307), Expect = 5e-32
Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 35/223 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ ++TGA +GIG+A A LA V R + E+ E + + + D
Sbjct: 28 SPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADE--IVGAGGQAIALEAD 85
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIEL---QLGVNHMGHFLLT 258
++ + +R ++ + +++++ NAG++G + + K + VN G FL
Sbjct: 86 VSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTL 145
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
++ L + I+ VSS+ R P
Sbjct: 146 ------------HLTVPYLK------QRGGGAIVVVSSINGTRTFTT-----------PG 176
Query: 319 Q-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AY +K A V ++LA L I VNAV PG + T+I
Sbjct: 177 ATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISD 219
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 121 bits (305), Expect = 6e-32
Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 37/224 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLES-KNKYVLCRKC 200
+I++VTGA+ GIG+ A A+ A VI+ R+ +K + + E+ +
Sbjct: 12 DRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDL 71
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIEL---QLGVNHMGHFLL 257
+ E+ + A+ + +++ +++NAG+ G ++E+ ++ + VN F+L
Sbjct: 72 LTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFML 131
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
T LL L ++ ++ SS ++G
Sbjct: 132 TQALLPLLLK----------------SDAG--SLVFTSSSVGRQGR-------------A 160
Query: 318 TQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AY SK A + LA + VN ++PG T +
Sbjct: 161 NWGAYAASKFATEGMMQVLADEY-QQRLRVNCINPGGTRTAMRA 203
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 121 bits (306), Expect = 6e-32
Identities = 49/223 (21%), Positives = 85/223 (38%), Gaps = 40/223 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+V+VTG GIG I R A+V++ D D E + + E + CD
Sbjct: 9 GKVVVVTGGGRGIGAGIVRAFVNSGARVVIC--DKD--ESGGRALEQELPG--AVFILCD 62
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHFLLT 258
+ ++ ++ E + +++ ++NNAG + + + L +N +G + LT
Sbjct: 63 VTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLT 122
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L L L+ + +IN+SS+ G
Sbjct: 123 KLALPYLRKS-------------------QGNVINISSLVGAIGQAQ------------A 151
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
Y +K A T+ LA G+ VN + PG + T +
Sbjct: 152 VPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEE 194
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 121 bits (307), Expect = 7e-32
Identities = 51/235 (21%), Positives = 90/235 (38%), Gaps = 33/235 (14%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMA--CRDLDKC------EKARKEVV--LESK 191
K+V+VTG G G++ A +LA+ A +I+ C D++ + +E +E
Sbjct: 10 DKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT 69
Query: 192 NKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNH 251
+ + D+ + ++ E K++V++ NAG+ L + V+
Sbjct: 70 GRKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDF 129
Query: 252 MGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
+G L L + + II SVA + +
Sbjct: 130 VGVINTVHAALPYLTSG--------------------ASIITTGSVAGLIA--AAQPPGA 167
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY 365
P A Y+ +K +T +LA +L I N +HP VNTD+L + Y
Sbjct: 168 GGPQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPMY 222
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 120 bits (304), Expect = 8e-32
Identities = 31/231 (13%), Positives = 66/231 (28%), Gaps = 51/231 (22%)
Query: 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKY 194
S K ++V G + +G + + + I D + A
Sbjct: 15 VPRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISI--DFRENPNADHSF-------- 64
Query: 195 VLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTE---EKIELQLGVNH 251
+ +E I++ E++ ++ K++ + AG ++ + ++ + +N
Sbjct: 65 ----TIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNL 120
Query: 252 MGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
F + L + + A T
Sbjct: 121 YSAFASAHIGAKLLNQG--------------------GLFVLTGASAALNRTSG------ 154
Query: 312 ENSYDPTQAYNQSKLANVLFTRELAKRLEGT--GITVNAVHPGIVNTDILR 360
AY +K A ++LA G G T + P ++T R
Sbjct: 155 ------MIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPTNR 199
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 121 bits (307), Expect = 8e-32
Identities = 38/222 (17%), Positives = 86/222 (38%), Gaps = 38/222 (17%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+GK+ +TG TG+GK + L+ A+ ++A R +D + +++ ++ NK V +C
Sbjct: 25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNK-VHAIQC 83
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCR----KMLTEEKIELQLGVNHMGHFL 256
D+ + ++ E+ K N++INNA G + L+ + + G
Sbjct: 84 DVRDPDMVQNTVSELIKVAGHPNIVINNAA--GNFISPTERLSPNAWKTITDIVLNGTAF 141
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
+T + + + + + ++++++ + G+
Sbjct: 142 VT-------LE-IGKQLI---------KAQKGAAFLSITTIYAETGS------------- 171
Query: 317 PTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
+K ++ LA G+ N + PG + T
Sbjct: 172 GFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTK 213
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 121 bits (305), Expect = 8e-32
Identities = 57/240 (23%), Positives = 94/240 (39%), Gaps = 39/240 (16%)
Query: 125 RGDVLGGAKYTEETSAR--GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKA 182
V G + S ++ IVTG +GIG+A A AK A V++A + D +
Sbjct: 8 SSGVDLGTENLYFQSMDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRV 67
Query: 183 RKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TE 240
E+ + D++S + + E+ + +++VL+NNAG ++ E
Sbjct: 68 ANEI-----GSKAFGVRVDVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPE 122
Query: 241 EKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300
E + + VN G FL + +Y + V + + IIN +S
Sbjct: 123 ETWDRIMSVNVKGIFLCS------------KYVI------PVMRRNGGGSIINTTSYTAT 164
Query: 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
++ AY SK A TR +A GI VNAV PG +++
Sbjct: 165 SAIADRT------------AYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFT 212
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 121 bits (305), Expect = 9e-32
Identities = 54/222 (24%), Positives = 86/222 (38%), Gaps = 45/222 (20%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ IVTG ++GIG A+ L + AKV+ D K D
Sbjct: 14 DKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHF------------KID 61
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
+ ++E ++ E+ K+ +I++L+NNAG+ + E + VN G +L+
Sbjct: 62 VTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMA- 120
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+Y++ V IIN++SV T N
Sbjct: 121 -----------KYTI------PVMLAIGHGSIINIASVQSYAATKNAA------------ 151
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
AY SK A + TR +A I NAV PG + T ++
Sbjct: 152 AYVTSKHALLGLTRSVAIDY-APKIRCNAVCPGTIMTPMVIK 192
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 121 bits (305), Expect = 9e-32
Identities = 54/224 (24%), Positives = 86/224 (38%), Gaps = 41/224 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ I+TGA GIG +R LA+ A+V++A A V + D
Sbjct: 11 NKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRG-----AVHHVVD 65
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
L ++ S+RA + +++++ NNA S ML T + + VN G L+
Sbjct: 66 LTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLM 125
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
+Y++ LI + I+N+SS
Sbjct: 126 C------------KYAIPRLI------SAGGGAIVNISSATAHAA-------------YD 154
Query: 318 TQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AY +K A TR +A + G+ NA+ PG+V T L
Sbjct: 155 MSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLE 198
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 120 bits (303), Expect = 1e-31
Identities = 61/222 (27%), Positives = 97/222 (43%), Gaps = 34/222 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVVLESKNKYVLCRKC 200
GK+ +VTG+ +GIG IA LA + A +++ D + EK R + + K VL
Sbjct: 4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVK-VLYDGA 62
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLT 258
DL+ E++R + ++ +I++L+NNAG+ + EK + L +N F T
Sbjct: 63 DLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGT 122
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L ++ + RIIN++S + NK
Sbjct: 123 AAALPHMKKQ--GF----------------GRIINIASAHGLVASANK------------ 152
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AY +K V FT+ A G GIT NA+ PG V T ++
Sbjct: 153 SAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVE 194
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 120 bits (303), Expect = 1e-31
Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 48/222 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+VIVTGA+ GIG+AIA +KVI + +A+ + + +CD
Sbjct: 8 DKVVIVTGASMGIGRAIAERFVDEGSKVIDL--SIHDPGEAKYDHI-----------ECD 54
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+ + + ++A + + KE I+VL+NNAG+ K+ + + + VN G++ +
Sbjct: 55 VTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYAS- 113
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
++++ S I+N+SSV
Sbjct: 114 -----------KFAI------PYMIRSRDPSIVNISSVQASII-------------TKNA 143
Query: 320 -AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AY SK A + T+ +A + NAV P ++T ++R
Sbjct: 144 SAYVTSKHAVIGLTKSIALDY-APLLRCNAVCPATIDTPLVR 184
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 119 bits (302), Expect = 1e-31
Identities = 56/268 (20%), Positives = 91/268 (33%), Gaps = 55/268 (20%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAK-------VIMACRDLDKCEKARKEVVLESKNKYV 195
I+++TGA GIG+AIA E A+ ++++ R EK E ++
Sbjct: 3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLE--CRAEGALT 60
Query: 196 LCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMG 253
D++ +R + + I+ L+NNAGV + LTEE + + N G
Sbjct: 61 DTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKG 120
Query: 254 HFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSEN 313
F LT L ++ Q S I ++SVA +
Sbjct: 121 TFFLTQALFALMER----------------QHSG--HIFFITSVAATKAF---------- 152
Query: 314 SYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372
+ Y SK + + + V PG V T +
Sbjct: 153 ---RHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGK----------- 198
Query: 373 VLKPLVWLFIKSPRQGAQTIVYASLDPS 400
+ + + P A +V A L PS
Sbjct: 199 -VDDEMQALMMMPEDIAAPVVQAYLQPS 225
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 120 bits (303), Expect = 2e-31
Identities = 53/224 (23%), Positives = 87/224 (38%), Gaps = 37/224 (16%)
Query: 142 GKIVIVTGA-NTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
GK+V+VT A TGIG AR A V+++ + + R ++ + V C
Sbjct: 22 GKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGR-VEAVVC 80
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLL 257
D+ S E++ A + ++ +++VL+NNAG+ G M T+E+ + L V
Sbjct: 81 DVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDM-TDEEWDRVLNVTLTSVMRA 139
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
T L + + I+N +SV R
Sbjct: 140 TRAALRYFRGV--DHG---------------GVIVNNASVLGWRA-------------QH 169
Query: 318 TQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
+Q+ Y +K + TR A G+ +NAV P I L
Sbjct: 170 SQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLE 213
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 119 bits (302), Expect = 2e-31
Identities = 52/221 (23%), Positives = 86/221 (38%), Gaps = 37/221 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +V+G G+G + R + AKV+ ++ + E L +YV D
Sbjct: 7 GKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAE--LADAARYV---HLD 61
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
+ +A + ++VL+NNAG+ + + + L VN G FL
Sbjct: 62 VTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGI- 120
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
R + + E+ IIN+SS+ GT+
Sbjct: 121 -----------RAVVKPMK------EAGRGSIINISSIEGLAGTVA------------CH 151
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y +K A T+ A L +GI VN++HPG+V T +
Sbjct: 152 GYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD 192
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 120 bits (303), Expect = 2e-31
Identities = 49/223 (21%), Positives = 74/223 (33%), Gaps = 36/223 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GKI IVTGA++GIG+A A A+ AKV++ R+ + + E + D
Sbjct: 8 GKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDE--IAGGGGEAAALAGD 65
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIEL---QLGVNHMGHFLLT 258
+ + A E + ++ NNAG G ++ +E L N FL
Sbjct: 66 VGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAA 125
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+Y + + SS
Sbjct: 126 ------------KYQV------PAIAALGGGSLTFTSSFVGHTAGF------------AG 155
Query: 319 Q-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y SK + + LA L GI VNA+ PG +T
Sbjct: 156 VAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANF 198
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 119 bits (302), Expect = 2e-31
Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 50/227 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G++ +VTG + G+G IA+ LA+ V++A R+L++ +A +++ E + +CD
Sbjct: 21 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLT-EKYGVETMAFRCD 79
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIE---LQLGVNHMGHFLLT 258
+++ E ++ E VK++ K++ ++N AG+ R E ++ + VN G + +
Sbjct: 80 VSNYEEVKKLLEAVKEKFGKLDTVVNAAGI-NRRHPAEEFPLDEFRQVIEVNLFGTYYVC 138
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDLNS 311
+E+ IIN+ S+ + T+
Sbjct: 139 -------------------------REAFSLLRESDNPSIINIGSLTVEEVTM------- 166
Query: 312 ENSYDPTQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P AY SK T+ LAK GI VN + PG T
Sbjct: 167 -----PNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTK 208
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 120 bits (303), Expect = 2e-31
Identities = 54/222 (24%), Positives = 89/222 (40%), Gaps = 37/222 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ IVTGA GIG A+AR LA V+ A D D + A ++ + D
Sbjct: 29 GKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCG-----AAACRVD 83
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
++ ++ I A + ++ L+ NAGV ++ T E + + +N G +L T
Sbjct: 84 VSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCT- 142
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+++ E I+N+SS+A + T
Sbjct: 143 -----------KHAA------PRMIERGGGAIVNLSSLAGQVAVGG------------TG 173
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
AY SK + +R A L +GI N + P V+T + +
Sbjct: 174 AYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQT 215
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 119 bits (301), Expect = 2e-31
Identities = 52/224 (23%), Positives = 91/224 (40%), Gaps = 36/224 (16%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
+ +GK +VTG+ +GIG IA+ LA+ A +++ A E + +
Sbjct: 1 TLKGKTALVTGSTSGIGLGIAQVLARAGANIVLN--GFGDPAPALAE--IARHGVKAVHH 56
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFL 256
DL+ I A ++E +++L+NNAG+ + E + + +N F
Sbjct: 57 PADLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFH 116
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
T L L ++A + RIIN++SV G+ K
Sbjct: 117 GTRLALPGMRAR--NW----------------GRIINIASVHGLVGSTGKA--------- 149
Query: 317 PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AY +K V T+ + + +T NA+ PG V T +++
Sbjct: 150 ---AYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQ 190
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 119 bits (301), Expect = 3e-31
Identities = 62/243 (25%), Positives = 92/243 (37%), Gaps = 44/243 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G+ V+VTG GIG+ IA A+ A V +A R + ++ K V+ + D
Sbjct: 10 GRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGK-VIGVQTD 68
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
++ + A A +E I+V+ NAGV T E++ VN G F
Sbjct: 69 VSDRAQCDALAGRAVEEFGGIDVVCANAGVF--PDAPLATMTPEQLNGIFAVNVNGTFYA 126
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI--NKEDLNSENSY 315
LD L A S R++ SS+ G I
Sbjct: 127 VQACLDALIA--SGS----------------GRVVLTSSIT---GPITGY---------- 155
Query: 316 DPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--YYDSWLSTV 372
P + Y +K A + F R A L ITVNA+ PG + T+ L + Y S ++
Sbjct: 156 -PGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLENGEEYIASMARSI 214
Query: 373 VLK 375
Sbjct: 215 PAG 217
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 119 bits (301), Expect = 3e-31
Identities = 54/222 (24%), Positives = 85/222 (38%), Gaps = 40/222 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRK 199
GK VTG + GIG AIA+ LA A V + + + VV +E + +
Sbjct: 31 GKTAFVTGGSRGIGAAIAKRLALEGAAVALTYV---NAAERAQAVVSEIEQAGGRAVAIR 87
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLL 257
D E+I E + +++L+N+AG+ + T + + VN F+
Sbjct: 88 ADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVA 147
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
++ + RII + S + P
Sbjct: 148 I-------RSASRH-----------LGDG--GRIITIGSNLAELVPW------------P 175
Query: 318 TQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
+ Y+ SK A T+ LA+ L GITVN VHPG +TD+
Sbjct: 176 GISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDM 217
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 119 bits (300), Expect = 4e-31
Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 36/228 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K++++TGA+ GIG+ IAREL AK+++ R + E E + L + D
Sbjct: 4 DKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATE--IRDAGGTALAQVLD 61
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
+ + S+ AFA+ +I+VL+NNAGV + + ++ E + VN G
Sbjct: 62 VTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIG 121
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+L ++A Q S +IIN+ S+
Sbjct: 122 AVLPIMEA----------------QRSG--QIINIGSIGALS------------VVPTAA 151
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDS 367
Y +K A + L R E T I V V+PG+V +++ ++ ++
Sbjct: 152 VYCATKFAVRAISDGL--RQESTNIRVTCVNPGVVESELAGTITHEET 197
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 118 bits (298), Expect = 5e-31
Identities = 48/221 (21%), Positives = 81/221 (36%), Gaps = 41/221 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G +VTGA GIG+ + L AKV+ R KE + D
Sbjct: 7 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
L ++ + +++L+NNA + + L T+E + VN F ++
Sbjct: 61 LGDWDATEKALGGI----GPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQ 116
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
++ + P I+NVSS+ N
Sbjct: 117 MVARDMINR-----------------GVPGSIVNVSSMVAHVTFPN------------LI 147
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y+ +K A + T+ +A L I VN+V+P +V TD+ +
Sbjct: 148 TYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGK 188
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 118 bits (298), Expect = 6e-31
Identities = 66/227 (29%), Positives = 97/227 (42%), Gaps = 47/227 (20%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRK 199
GK+ +VTGA+ GIG+AIA+ LA A V + ++ +E V ++S
Sbjct: 7 GKVALVTGASRGIGRAIAKRLANDGALVAIHYG---NRKEEAEETVYEIQSNGGSAFSIG 63
Query: 200 CDLASQESIRAFAEEVKKENK------KINVLINNAGVSGCRKM--LTEEKIELQLGVNH 251
+L S + A + E + K ++LINNAG+ + TE+ + + VN
Sbjct: 64 ANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNA 123
Query: 252 MGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
F + L +L+ N SRIIN+SS A +
Sbjct: 124 KAPFFIIQQALSRLRDN--------------------SRIINISSAATRISL-------- 155
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P Y+ +K A T LAK+L GITVNA+ PG V TD
Sbjct: 156 -----PDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTD 197
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 118 bits (298), Expect = 6e-31
Identities = 50/223 (22%), Positives = 84/223 (37%), Gaps = 44/223 (19%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK ++VTGA +GIG+A A+ A ++ R+ +A + E + D
Sbjct: 6 GKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAE-----AIAVVAD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLT 258
++ +++ A E +E +++ + + AGV+ + E E L VN G FL+
Sbjct: 61 VSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNL-PLEAWEKVLRVNLTGSFLVA 119
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+ L+ ++ SVA G
Sbjct: 120 RKAGEVLE----EG----------------GSLVLTGSVA---GLGA-----------FG 145
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
A Y KL V R LA L G+ VN + PG++ T +
Sbjct: 146 LAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTA 188
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 118 bits (298), Expect = 6e-31
Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 55/226 (24%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+V++TGA+ GIG + R R +V+ R + V D
Sbjct: 28 QKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSADPDIHTV-----------AGD 76
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
++ E+ E + +I+ L+NNAGV + + T+E + LGVN G F +T
Sbjct: 77 ISKPETADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHIT- 135
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDLNSE 312
Q +A I+++++ + +
Sbjct: 136 ------------------------QRAAAEMLKQGSGHIVSITTSLVDQPMVGM------ 165
Query: 313 NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
P+ + +K TR LA +G+ VNAV PG++ T +
Sbjct: 166 ----PSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPM 207
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 117 bits (297), Expect = 6e-31
Identities = 51/229 (22%), Positives = 81/229 (35%), Gaps = 57/229 (24%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G+ V+VTGA GIG+ + L A+V+ R + +E + D
Sbjct: 7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPVCVD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
L E+ V +++L+NNA V+ + L T+E + VN ++
Sbjct: 61 LGDWEATERALGSV----GPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVS- 115
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS--------RIINVSSVAHKRGTINKEDLNS 311
Q A I+NVSS +R N
Sbjct: 116 ------------------------QIVARGLIARGVPGAIVNVSSQCSQRAVTNH----- 146
Query: 312 ENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y +K A + T+ +A L I VNAV+P +V T + +
Sbjct: 147 -------SVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQ 188
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 117 bits (295), Expect = 7e-31
Identities = 43/267 (16%), Positives = 88/267 (32%), Gaps = 54/267 (20%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
++++TGA++G+G +A+ + R K L + V R DL
Sbjct: 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNC--LSNN---VGYRARDL 56
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTML 260
AS + + E++ + ++++AG + E+I+ + N +
Sbjct: 57 ASHQEVEQLFEQLD---SIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRE 113
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
L+ + + P ++ + S A ++ ++
Sbjct: 114 LVKRYKDQ-------------------PVNVVMIMSTAAQQPK-------------AQES 141
Query: 321 -YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW 379
Y K A + L+G + + AV+PG + T+ S L +
Sbjct: 142 TYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWETSG--------KSLDTSSF 193
Query: 380 LFIKSPRQGAQTIVYASLDPSLENVSG 406
+ S A I A + VS
Sbjct: 194 M---SAEDAALMIHGALANIGNGYVSD 217
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 118 bits (299), Expect = 7e-31
Identities = 45/220 (20%), Positives = 86/220 (39%), Gaps = 35/220 (15%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
R K+ +TG +GIG IA + ++A R L + A +++ + + L
Sbjct: 26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRR-CLPLSM 84
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVS-GCRKM-LTEEKIELQLGVNHMGHFLLT 258
D+ + ++ A ++ KE +I++LIN A + C L+ + + ++ G F ++
Sbjct: 85 DVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVS 144
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+L +K + I+N+++ RG
Sbjct: 145 RVLYEKFFRD------------------HGGVIVNITATLGNRGQ-------------AL 173
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Q +K A TR LA I VN++ PG ++
Sbjct: 174 QVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGT 213
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 117 bits (295), Expect = 1e-30
Identities = 59/222 (26%), Positives = 94/222 (42%), Gaps = 44/222 (19%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK++I+T A GIG+A A A+ AKVI D++ E +E+ + R D
Sbjct: 6 GKVIILTAAAQGIGQAAALAFAREGAKVIAT--DIN--ESKLQELEKYPG---IQTRVLD 58
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+ ++ I FA EV ++++VL N AG +L E+ + + +N +L+
Sbjct: 59 VTKKKQIDQFANEV----ERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIK 114
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
L K+ A S IIN+SSVA + +
Sbjct: 115 AFLPKMLAQKS------------------GNIINMSSVASSVKGV------------VNR 144
Query: 320 -AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y+ +K A + T+ +A GI N V PG V+T L+
Sbjct: 145 CVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQ 186
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 116 bits (294), Expect = 1e-30
Identities = 33/231 (14%), Positives = 61/231 (26%), Gaps = 59/231 (25%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
I +VT A G A L + V+ A + ES+N
Sbjct: 2 VIALVTHARHFAGPAAVEALTQDGYTVVCHDASF---ADAAERQRFESENP-----GTIA 53
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCR-----KMLTEEKIELQLGVNHMGHFLL 257
+++ + + + I+ +++N + + +E I + LL
Sbjct: 54 LAEQKPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILL 113
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDLN 310
Q + +I ++S K+
Sbjct: 114 L-------------------------QSAIAPLRAAGGASVIFITSSVGKKP-------- 140
Query: 311 SENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y ++ A V AK L GI + A+ P N
Sbjct: 141 -----LAYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYF 186
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 117 bits (296), Expect = 2e-30
Identities = 57/243 (23%), Positives = 88/243 (36%), Gaps = 44/243 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ V+VTG GIG+ IA A+ A V +A R + E+ V+ + D
Sbjct: 41 ARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGN-VIGVRLD 99
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
++ S A V ++V+ NAG+ + T E++ L VN G
Sbjct: 100 VSDPGSCADAARTVVDAFGALDVVCANAGIF--PEARLDTMTPEQLSEVLDVNVKGTVYT 157
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI--NKEDLNSENSY 315
L L A+ R+I SS+ G +
Sbjct: 158 VQACLAPLTAS--GR----------------GRVILTSSIT---GPVTGY---------- 186
Query: 316 DPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH--SSYYDSWLSTV 372
P + Y SK A + F R A L G+TVNA+ PG + T+ L Y ++
Sbjct: 187 -PGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDMGEEYISGMARSI 245
Query: 373 VLK 375
+
Sbjct: 246 PMG 248
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 117 bits (295), Expect = 2e-30
Identities = 54/262 (20%), Positives = 105/262 (40%), Gaps = 39/262 (14%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
R ++ +VTGA+ GIG A+AR L ++ KV+ R + E+ E ++ +C
Sbjct: 31 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRC 90
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLT--EEKIELQLGVNHMGHFLLT 258
DL+++E I + ++ ++ +++ INNAG++ +L+ + VN + + T
Sbjct: 91 DLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICT 150
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA-HKRGTINKEDLNSENSYDP 317
++ + IIN++S++ H+ + +
Sbjct: 151 REAYQSMKE----------------RNVDDGHIININSMSGHR--VLPLSVTH------- 185
Query: 318 TQAYNQSKLANVLFTRELAKRLE----GTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373
Y+ +K A T L R E T I + PG+V T D +
Sbjct: 186 --FYSATKYAVTALTEGL--RQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAAT 241
Query: 374 LKPLVWLFIKSPRQGAQTIVYA 395
+ + L P A+ ++Y
Sbjct: 242 YEQMKCL---KPEDVAEAVIYV 260
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 116 bits (293), Expect = 3e-30
Identities = 51/225 (22%), Positives = 84/225 (37%), Gaps = 49/225 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G VTGA +GIG I R A A++I+ R+ ++A +E+ D
Sbjct: 11 GACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQEL----GAAVAARIVAD 66
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+ E++ A A E + +++L+N+AG++ L + + VN G F +
Sbjct: 67 VTDAEAMTAAAAEAEAVA-PVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWAS- 124
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDLNSE 312
+ + I+N+ S++
Sbjct: 125 ------------------------RAFGRAMVARGAGAIVNLGSMSGTIV---------- 150
Query: 313 NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
N +Y SK A TR LA G G+ VNA+ PG V T+
Sbjct: 151 NRPQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATE 195
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 117 bits (295), Expect = 3e-30
Identities = 51/228 (22%), Positives = 91/228 (39%), Gaps = 49/228 (21%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCR 198
+ + +VTG ++GIG+A A A+ A V + L E+ ++V +E + +
Sbjct: 48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINY--LPAEEEDAQQVKALIEECGRKAVLL 105
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHF 255
DL+ + R+ + ++ +++L AG + T E+ + VN F
Sbjct: 106 PGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALF 165
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAP-----SRIINVSSVAHKRGTINKEDLN 310
+T QE+ P + II SS+ +
Sbjct: 166 WIT-------------------------QEAIPLLPKGASIITTSSIQAYQP-------- 192
Query: 311 SENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
S + D Y +K A + ++R LAK++ GI VN V PG + T +
Sbjct: 193 SPHLLD----YAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTAL 236
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 115 bits (291), Expect = 6e-30
Identities = 48/224 (21%), Positives = 86/224 (38%), Gaps = 40/224 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VTG +G+G + + L AKV + + ++ E L ++ +V + D
Sbjct: 6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAE--LGERSMFV---RHD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
++S+ V++ +NVL+NNAG+ M E L +N F+
Sbjct: 61 VSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGC- 119
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+ + + IIN++SV+
Sbjct: 120 -----------QQGIAAMK-------ETGGSIINMASVSSWLPIEQ------------YA 149
Query: 320 AYNQSKLANVLFTRELAKRL--EGTGITVNAVHPGIVNTDILRH 361
Y+ SK A TR A +G I VN++HP + T +++
Sbjct: 150 GYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQA 193
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 116 bits (292), Expect = 6e-30
Identities = 41/243 (16%), Positives = 72/243 (29%), Gaps = 46/243 (18%)
Query: 134 YTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKN 192
T ++ ++TG IG +IA L ++ +V++ R ++ E+
Sbjct: 3 ETSHEASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAG 62
Query: 193 KYVLCRKCDLASQESIRAFAE----EVKKENKKINVLINNAGV-------------SGCR 235
+ K DL+ S+ E + + +VL+NNA
Sbjct: 63 S-AVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAAD 121
Query: 236 KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295
+ ++ G N + L + + S ++N+
Sbjct: 122 AKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGA-------------WRSRNLSVVNLC 168
Query: 296 SVAHKRGTINKEDLNSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIV 354
P Y +K A TR A L I VNAV PG+
Sbjct: 169 DAMTDLPL-------------PGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLS 215
Query: 355 NTD 357
Sbjct: 216 LLP 218
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 116 bits (293), Expect = 6e-30
Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 52/227 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GKI +VTGA+ GIG AIA AK A ++ + + ++ ++ CD
Sbjct: 34 GKIALVTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAA--YKAAGINAHGYVCD 91
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHFLLT 258
+ ++ I+A +++ E I++L+NNAG+ R + T + + ++ F+++
Sbjct: 92 VTDEDGIQAMVAQIESEVGIIDILVNNAGIIR-RVPMIEMTAAQFRQVIDIDLNAPFIVS 150
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDLNS 311
+ PS +IIN+ S+ + G
Sbjct: 151 -------------------------KAVIPSMIKKGHGKIINICSMMSELGR-------- 177
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
T + Y +K + T+ +A I N + PG + T
Sbjct: 178 -----ETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATP 219
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 116 bits (293), Expect = 7e-30
Identities = 48/223 (21%), Positives = 87/223 (39%), Gaps = 38/223 (17%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKY---VLC 197
+G++ IVTG TGIGKAI +EL + + V++A R L++ + A E+ V+
Sbjct: 17 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIP 76
Query: 198 RKCDLASQESIRAFAEEVKKENKKINVLINNAGVS-GCRKM-LTEEKIELQLGVNHMGHF 255
+C++ ++E + + KIN L+NN G ++ + L N G F
Sbjct: 77 IQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTF 136
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
+ +A + + + I+N+ G
Sbjct: 137 YMC-------KA-VYSSWM----------KEHGGSIVNIIVPTK-AGF------------ 165
Query: 316 DPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P ++ T+ LA +GI +N V PG++ +
Sbjct: 166 -PLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQ 207
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 114 bits (289), Expect = 7e-30
Identities = 43/225 (19%), Positives = 77/225 (34%), Gaps = 44/225 (19%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
KI +VTGA G+G I ++L++ + R+ + + V + D
Sbjct: 5 KKIAVVTGATGGMGIEIVKDLSRDHIVYALG-RNPEHLAALAEIEG-------VEPIESD 56
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
+ + +++ K ++ L++ A V+ + + + L +N + L+
Sbjct: 57 IVKEVLEEGGVDKL-KNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSR 115
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
LL L+A A +I ++S A P
Sbjct: 116 QLLPALRA-------------------ASGCVIYINSGAGNGPH-------------PGN 143
Query: 320 A-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363
Y SK A K GI V+ V PG NT +L+
Sbjct: 144 TIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQGLM 188
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 115 bits (290), Expect = 1e-29
Identities = 50/228 (21%), Positives = 84/228 (36%), Gaps = 36/228 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKAR---KEVV--LESKNKYVL 196
GK + +TGA+ GIG AIA A+ A V +A + K + + L
Sbjct: 6 GKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGL 65
Query: 197 CRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGH 254
KCD+ ++ +RA I++L+NNA R L ++ +L VN G
Sbjct: 66 ALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGS 125
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
F+ QA L + ++ I+ ++
Sbjct: 126 FVCA-------QACL-PH----------LLQAPNPHILTLAPPPSLNP----------AW 157
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPG-IVNTDILRH 361
+ Y +K+ L T LA G+ +NA+ P ++ TD +
Sbjct: 158 WGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDAINM 205
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 114 bits (288), Expect = 2e-29
Identities = 36/224 (16%), Positives = 75/224 (33%), Gaps = 38/224 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKAR---KEVV--LESKNKYVL 196
GK + ++G + GIG AIA+ +A A V + + + K +E L
Sbjct: 9 GKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQAL 68
Query: 197 CRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGH 254
D+ +++ A + ++ I++ +NNA + + ++ +L G+ G
Sbjct: 69 PIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGT 128
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
+ ++ Q+ + + + I+ +S
Sbjct: 129 YAVS-------QSCI-PH----------MKGRDNPHILTLSPPIRLEPKW---------- 160
Query: 315 YDPTQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Y +K L +A+ L GI N + P
Sbjct: 161 --LRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVAT 202
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 114 bits (288), Expect = 3e-29
Identities = 46/223 (20%), Positives = 82/223 (36%), Gaps = 36/223 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ I+TG GIG+ A+ + AKV++A D +K + +V CD
Sbjct: 16 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFV---HCD 72
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM----LTEEKIELQLGVNHMGHFLL 257
+ E +R + ++ K++++ N GV E + + +N G FL+
Sbjct: 73 VTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLV 132
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
+++ V + I+ +S++
Sbjct: 133 A------------KHAAR------VMIPAKKGSIVFTASISSFTAGEG-----------V 163
Query: 318 TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
+ Y +K A + T L L GI VN V P IV + +L
Sbjct: 164 SHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLT 206
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 113 bits (286), Expect = 3e-29
Identities = 45/235 (19%), Positives = 79/235 (33%), Gaps = 59/235 (25%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
I++++G TGIG A + L +++ EV+ DL
Sbjct: 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA-------EVI------------ADL 42
Query: 203 ASQESI-RAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
++ E +A A+ + K +K ++ L+ AG+ + + + VN+ G L
Sbjct: 43 STAEGRKQAIADVLAKCSKGMDGLVLCAGLGP-----QTKVLGNVVSVNYFGATELMDAF 97
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ-- 319
L L+ + +SSVA +K L
Sbjct: 98 LPALKK------------------GHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKA 139
Query: 320 --------------AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AY SK A + R+ A G+ +N + PG T +L+
Sbjct: 140 RAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQ 194
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 114 bits (288), Expect = 3e-29
Identities = 50/251 (19%), Positives = 80/251 (31%), Gaps = 44/251 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKC 200
+VTGA IG+AIA +L + +V++ + E+ E N + +
Sbjct: 23 APAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNT-AVVCQA 81
Query: 201 DLASQESIRAFAE----EVKKENKKINVLINNAGVS------------GCRKMLTEEKIE 244
DL + + A E + + +VL+NNA E ++
Sbjct: 82 DLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVA 141
Query: 245 LQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI 304
+G N + F L+ S+ I+N+ +
Sbjct: 142 ELIGTNAIAPF------------LLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQPC- 188
Query: 305 NKEDLNSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363
+ YN K A V T+ A L GI VN V PG+ +
Sbjct: 189 ------------MAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPVAMGEE 236
Query: 364 YYDSWLSTVVL 374
D W V L
Sbjct: 237 EKDKWRRKVPL 247
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 114 bits (287), Expect = 3e-29
Identities = 50/240 (20%), Positives = 91/240 (37%), Gaps = 35/240 (14%)
Query: 142 GKIVIVTGANT--GIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRK 199
GK+V+VTGA+ G+G AR A+ A V + + + + + ++ K
Sbjct: 20 GKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYK 79
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLL 257
C + S ES ++V + +I+ I NAG + +L + E + V+ G F
Sbjct: 80 CQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHC 139
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
+A + F+E ++ +S++ G I N
Sbjct: 140 A-------KA-VGH----------HFKERGTGSLVITASMS---GHIA-------NFPQE 171
Query: 318 TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--YYDSWLSTVVLK 375
+YN +K + R LA VN++ PG ++T + W S + +
Sbjct: 172 QTSYNVAKAGCIHMARSLANEW-RDFARVNSISPGYIDTGLSDFVPKETQQLWHSMIPMG 230
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 113 bits (285), Expect = 3e-29
Identities = 51/222 (22%), Positives = 76/222 (34%), Gaps = 46/222 (20%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK V VTGA GIG A A + AKV D ++ D
Sbjct: 7 GKNVWVTGAGKGIGYATALAFVEAGAKVTGF--DQAFTQEQYP----------FATEVMD 54
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFLLTM 259
+A + + + E ++++ L+N AG+ G L++E + VN G F L
Sbjct: 55 VADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLF- 113
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
Q F+ I+ V+S A
Sbjct: 114 ------QQ-TMNQ----------FRRQRGGAIVTVASDAAHTP-------------RIGM 143
Query: 320 A-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
+ Y SK A + L G+G+ N V PG +TD+ R
Sbjct: 144 SAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQR 185
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 113 bits (284), Expect = 4e-29
Identities = 51/227 (22%), Positives = 79/227 (34%), Gaps = 48/227 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
V++TGA+ GIG+A AR L + +V + RD + + E LE L D
Sbjct: 5 KGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAE--LEG----ALPLPGD 58
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLG-------VNHMGH 254
+ + +++ +++ L+NNAGV + + EL L N G
Sbjct: 59 VREEGDWARAVAAMEEAFGELSALVNNAGV-----GVMKPVHELTLEEWRLVLDTNLTGA 113
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
FL + L I+NV S+A K
Sbjct: 114 FLGIRHAVPALLRRGGGT------------------IVNVGSLAGKNP------------ 143
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
+ AYN SK + L + V V PG V+T +
Sbjct: 144 FKGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGN 190
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 112 bits (283), Expect = 5e-29
Identities = 33/227 (14%), Positives = 66/227 (29%), Gaps = 53/227 (23%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
VIV G +G AI K V+ DL ++A +++ +
Sbjct: 3 SGKVIVYGGKGALGSAILEFFKKNGYTVLNI--DLSANDQADSNILV----------DGN 50
Query: 202 LASQESIRAFAEEVKKENK--KINVLINNAGVSGCRKMLTE---EKIELQLGVNHMGHFL 256
E ++ E+ + +++ + AG ++ + +L + + +
Sbjct: 51 KNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAI 110
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
L L+ + + A T
Sbjct: 111 AAKLATTHLKPG--------------------GLLQLTGAAAAMGPT------------- 137
Query: 317 PTQ-AYNQSKLANVLFTRELAKRLEGT--GITVNAVHPGIVNTDILR 360
P+ Y +K A T LA + G V + P ++T + R
Sbjct: 138 PSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNR 184
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 112 bits (282), Expect = 6e-29
Identities = 32/224 (14%), Positives = 64/224 (28%), Gaps = 47/224 (20%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ V+V G +G + R V D+ + E+A V+++
Sbjct: 7 ARRVLVYGGRGALGSRCVQAFRARNWWVASI--DVVENEEASASVIVK--------MTDS 56
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTE---EKIELQLGVNHMGHFLLT 258
Q ++K++ ++ AG ++ + +L + + +
Sbjct: 57 FTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISS 116
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L L+ + + A GT
Sbjct: 117 HLATKHLKEG--------------------GLLTLAGAKAALDGTPG------------M 144
Query: 319 QAYNQSKLANVLFTRELAKRLEGT--GITVNAVHPGIVNTDILR 360
Y +K A + LA + G G AV P ++T + R
Sbjct: 145 IGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNR 188
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 112 bits (283), Expect = 6e-29
Identities = 57/225 (25%), Positives = 93/225 (41%), Gaps = 44/225 (19%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK +VTGA GIGKAIA LA A VI++ + + + A + + D
Sbjct: 6 GKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKK-----ARAIAAD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCR-----KMLTEEKIELQLGVNHMGHFL 256
++ S++A E++ I++L+NNA + + + + VN G F+
Sbjct: 61 ISDPGSVKALFAEIQALTGGIDILVNNASIV--PFVAWDDV-DLDHWRKIIDVNLTGTFI 117
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
+T +A + R+I+++S GT
Sbjct: 118 VT-------RA-GTDQMRAAGKA---------GRVISIASNTFFAGT------------- 147
Query: 317 PTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
P A Y +K + FTR LA L IT NAV PG++ +D ++
Sbjct: 148 PNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVK 192
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 111 bits (280), Expect = 7e-29
Identities = 43/264 (16%), Positives = 80/264 (30%), Gaps = 64/264 (24%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
V++TGA G+G A AR L ++++ R + +EV DLA
Sbjct: 3 VLITGATGGLGGAFARALKG--HDLLLSGRRAGALAELAREVG-------ARALPADLAD 53
Query: 205 QESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTMLLL 262
+ +A EE +++L++ G +G + + +E L + L +L
Sbjct: 54 ELEAKALLEEAGP----LDLLVHAVGKAGRASVREAGRDLVEEMLAAH----LLTAAFVL 105
Query: 263 DKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA-Y 321
+ Q+ A R + + P A Y
Sbjct: 106 KHARF----------------QKGA--RAVFFGAYPRYVQV-------------PGFAAY 134
Query: 322 NQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLF 381
+K A + K L G+ + V V T +
Sbjct: 135 AAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLWAPLGGPPKGAL----------- 183
Query: 382 IKSPRQGAQTIVYASLDPSLENVS 405
SP + A+ ++ + +
Sbjct: 184 --SPEEAARKVLEGLFREPVPALL 205
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 114 bits (288), Expect = 7e-29
Identities = 49/228 (21%), Positives = 90/228 (39%), Gaps = 37/228 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKAR---KEVV--LESKNKYVL 196
G V +TGA+ GIGKAIA + AK A +++A + K +E+ L
Sbjct: 45 GCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKAL 104
Query: 197 CRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGH 254
D+ ++ I A E+ K+ I++L+NNA L ++++L + VN G
Sbjct: 105 PCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGT 164
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
+L + + ++S + I+N+S +
Sbjct: 165 YLASKACIP------------------YLKKSKVAHILNISPPLNLNP----------VW 196
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPG-IVNTDILRH 361
+ AY +K ++ +A+ I VNA+ P ++T +
Sbjct: 197 FKQHCAYTIAKYGMSMYVLGMAEEF-KGEIAVNALWPKTAIHTAAMDM 243
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 113 bits (285), Expect = 8e-29
Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 52/227 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ +VTGA GIG+ IA+ LAK + VI R C+ E ++S D
Sbjct: 44 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDE--IKSFGYESSGYAGD 101
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
++ +E I ++ E+K +++L+NNAG++ R L ++ E L N F +
Sbjct: 102 VSKKEEISEVINKILTEHKNVDILVNNAGIT--RDNLFLRMKNDEWEDVLRTNLNSLFYI 159
Query: 258 T------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
T M+ +RY RIIN+SS+ G N
Sbjct: 160 TQPISKRMI---N-----NRY----------------GRIINISSIVGLTG--N------ 187
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
QA Y+ SK + FT+ LAK L ITVNA+ PG +++D
Sbjct: 188 -----VGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSD 229
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 113 bits (285), Expect = 1e-28
Identities = 47/239 (19%), Positives = 89/239 (37%), Gaps = 44/239 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMA--CRDLDKC------EKARKEVV--LESK 191
GK+ +TGA G G++ A LA+ A +I C+ LD E V +E+
Sbjct: 28 GKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL 87
Query: 192 NKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIE---LQLG 248
+ ++ + D+ ++++A ++ + ++++++ NA ++ L + +
Sbjct: 88 GRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMID 147
Query: 249 VNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKED 308
VN G ++ + + + A + I+ SS+ RG
Sbjct: 148 VNLNGAWITARVAIPHIMAG---------------KRGG--SIVFTSSIGGLRGA----- 185
Query: 309 LNSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD 366
Y SK R +A L I VN V P V T +L + Y
Sbjct: 186 --------ENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYR 236
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 112 bits (283), Expect = 1e-28
Identities = 50/236 (21%), Positives = 89/236 (37%), Gaps = 39/236 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMA--CRDLDKC------EKARKEVV--LESK 191
GK+ +TGA G G+A A LA A +I C + + V +E
Sbjct: 13 GKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDI 72
Query: 192 NKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNH 251
++ R+ D+ +ES+ A + E ++++++ NAG++ ++ + VN
Sbjct: 73 GSRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAPMS--AGDDGWHDVIDVNL 130
Query: 252 MGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
G + + + L + I+ +SS A G +
Sbjct: 131 TGVYHTIKVAIPTLVKQGT-----------------GGSIVLISSSAGLAGVGSA----- 168
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD 366
DP Y +K V R A L G I VN++HP V T ++ + +
Sbjct: 169 ----DPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNEFTRE 220
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 111 bits (281), Expect = 1e-28
Identities = 57/217 (26%), Positives = 85/217 (39%), Gaps = 40/217 (18%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
+ VIVTG GIGK I + + KV D EK + E N + D+
Sbjct: 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDID----EKRSADFAKERPN--LFYFHGDV 56
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFLLTML 260
A +++ F E ++ ++I+VL+NNA G L E+ + L V + L+ L
Sbjct: 57 ADPLTLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRL 116
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
D+L N RIIN++S + + E A
Sbjct: 117 CRDELIKN-------------------KGRIINIASTRAFQSEPDSE------------A 145
Query: 321 YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Y +K V T LA L G + VN + PG +N
Sbjct: 146 YASAKGGIVALTHALAMSL-GPDVLVNCIAPGWINVT 181
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 112 bits (282), Expect = 2e-28
Identities = 58/225 (25%), Positives = 88/225 (39%), Gaps = 50/225 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G+ +VTGA +GIG+AIA A+ A V+ R D ++ E+ D
Sbjct: 31 GRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEI--ADGGGSAEAVVAD 87
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
LA E AEE+ ++++VL+NNAG+ + + L VN ++L+
Sbjct: 88 LADLEGAANVAEEL-AATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLS- 145
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDLNSE 312
+ + RI+ ++S+ +G N
Sbjct: 146 ------------------------RSFGTAMLAHGSGRIVTIASMLSFQGGRN------- 174
Query: 313 NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
AY SK A V TR LA G G+ VNA+ PG V T
Sbjct: 175 -----VAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTA 214
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 111 bits (280), Expect = 2e-28
Identities = 62/227 (27%), Positives = 93/227 (40%), Gaps = 52/227 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
++ IVTGA+ GIG+AIA ELA+R A VI E + +
Sbjct: 28 KQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAA--FKQAGLEGRGAVLN 85
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
+ ++ A E KE +NVL+NNAG++ + L +++ + + N F L
Sbjct: 86 VNDATAVDALVESTLKEFGALNVLVNNAGIT--QDQLAMRMKDDEWDAVIDTNLKAVFRL 143
Query: 258 T------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
+ M+ K +R RI+N++SV G N
Sbjct: 144 SRAVLRPMM---K-----ARG----------------GRIVNITSVVGSAG--N------ 171
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P Q Y +K TR LA+ + GITVN V PG ++TD
Sbjct: 172 -----PGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTD 213
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 110 bits (278), Expect = 3e-28
Identities = 61/227 (26%), Positives = 96/227 (42%), Gaps = 52/227 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ +VTGA+ GIG +A LA + A V+ EK ++ K +
Sbjct: 5 EKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENS--MKEKGFKARGLVLN 62
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
++ ESI+ F E+K EN I++L+NNAG++ R L +E++ + + N F +
Sbjct: 63 ISDIESIQNFFAEIKAENLAIDILVNNAGIT--RDNLMMRMSEDEWQSVINTNLSSIFRM 120
Query: 258 T------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
+ M+ K R+ RII++ SV G N
Sbjct: 121 SKECVRGMM---K-----KRW----------------GRIISIGSVVGSAG--N------ 148
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P Q Y +K + F++ LA + ITVN V PG + TD
Sbjct: 149 -----PGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATD 190
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 110 bits (278), Expect = 3e-28
Identities = 28/226 (12%), Positives = 57/226 (25%), Gaps = 57/226 (25%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
IVT G A L++ V + ++ +
Sbjct: 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFA--------ETYPQLKP 53
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHFLLTM 259
S++ E V +++VL++N + + + E + + F L
Sbjct: 54 MSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALV- 112
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDLNSE 312
A II ++S
Sbjct: 113 ------------------------NAVASQMKKRKSGHIIFITSATPFGP---------- 138
Query: 313 NSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
+ Y ++ L+K L I V A+ P ++++
Sbjct: 139 ---WKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSE 181
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 111 bits (279), Expect = 4e-28
Identities = 43/228 (18%), Positives = 86/228 (37%), Gaps = 38/228 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G IV+G G+G+A R L V++A +K + E L ++ ++V +
Sbjct: 30 GASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADE--LGNRAEFV---STN 84
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQL-------GVNHMGH 254
+ S++S+ A E + + ++ + G ++++ + + + G
Sbjct: 85 VTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGT 144
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
+ + L+ + A R + ++ +S+A G I
Sbjct: 145 YNVARLVAASIAAAEPR------------ENGERGALVLTASIAGYEGQIG--------- 183
Query: 315 YDPTQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
Q AY +K + T A+ L GI VN + PG + T I+
Sbjct: 184 ----QTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMES 227
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 109 bits (276), Expect = 5e-28
Identities = 47/231 (20%), Positives = 93/231 (40%), Gaps = 35/231 (15%)
Query: 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLC 197
++ +GK+ ++TGA++GIG+A AR LA A V +A R ++K E L + V
Sbjct: 3 SALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDE--LTAAGAKVHV 60
Query: 198 RKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHF 255
+ D+A ++ + A + +++L+NNAG+ + + N +G
Sbjct: 61 LELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLM 120
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
+T L L + ++ +SS+A + +
Sbjct: 121 YMTRAALPHLLRS-------------------KGTVVQMSSIAGRV------------NV 149
Query: 316 DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD 366
Y +K F+ L + + G+ V + PG +T++ H ++
Sbjct: 150 RNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTA 200
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 111 bits (279), Expect = 5e-28
Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 42/224 (18%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCR 198
+GK V++TG ++GIG+A++ AK A + +A LD+ A E +E + +
Sbjct: 46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIA--YLDEEGDAN-ETKQYVEKEGVKCVLL 102
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHF 255
DL+ ++ + +E ++ +N+L+NN ++ L T E++E +N +F
Sbjct: 103 PGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYF 162
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
+T L L+ IIN +S+ G
Sbjct: 163 HVTKAALSHLKQG--------------------DVIINTASIVAYEGN------------ 190
Query: 316 DPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
T Y+ +K A V FTR L++ L GI VN V PG + T +
Sbjct: 191 -ETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPL 233
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 110 bits (278), Expect = 6e-28
Identities = 52/239 (21%), Positives = 92/239 (38%), Gaps = 44/239 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMA--CRDLDKC-------EKARKEVV--LES 190
G++ +TGA G G++ A LA A +I C + + E +E
Sbjct: 15 GRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVED 74
Query: 191 KNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLG 248
+ + L R D+ ++R + ++ +++V++ NAGV ++ LT+E+ + +G
Sbjct: 75 QGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIG 134
Query: 249 VNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKED 308
VN G + + + I+ VSS A + T
Sbjct: 135 VNLTGTWRTLRATVPAMIEA-----------------GNGGSIVVVSSSAGLKAT----- 172
Query: 309 LNSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD 366
P Y+ SK T LA L GI VN++HP V T ++ + +
Sbjct: 173 --------PGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPEAMME 223
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 110 bits (278), Expect = 6e-28
Identities = 50/237 (21%), Positives = 83/237 (35%), Gaps = 42/237 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMA--CRDLDKC-------EKARKEVV--LES 190
G++ +TGA G G+A A +A A +I L C E V +E+
Sbjct: 11 GRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEA 70
Query: 191 KNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLG 248
N+ ++ D + +R ++ ++++++ NAGV+ + +T E +
Sbjct: 71 ANRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMD 130
Query: 249 VNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKED 308
+N G + M ++ II +SS A +
Sbjct: 131 INVTGTWNTVMAGAPRIIEG-----------------GRGGSIILISSAAGMKMQPF--- 170
Query: 309 LNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY 365
Y SK A R A L I VN+VHPG VNT +
Sbjct: 171 ---------MIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGDMVT 218
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 109 bits (275), Expect = 6e-28
Identities = 52/226 (23%), Positives = 83/226 (36%), Gaps = 59/226 (26%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
+ +VTG + GIG+AIA L R +V +A R+ ++ ++ V L DL
Sbjct: 3 RKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLGAVPL----------PTDL 52
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIE---LQLGVNHMGHFLLTM 259
++ + + + ++VL++ A V+ RK E E L ++ FLL
Sbjct: 53 -EKDDPKGLVKRALEALGGLHVLVHAAAVNV-RKPALELSYEEWRRVLYLHLDVAFLLA- 109
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDLNSE 312
Q +AP R++ + SV
Sbjct: 110 ------------------------QAAAPHMAEAGWGRVLFIGSVTTFTAGGP------- 138
Query: 313 NSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Y +K A + TR LAK GI VN + PG V T+
Sbjct: 139 ----VPIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETE 180
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 109 bits (275), Expect = 8e-28
Identities = 56/222 (25%), Positives = 82/222 (36%), Gaps = 48/222 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K V++TGA GIG+A AK A+++ + +A + V D
Sbjct: 5 DKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVG-------AHPVVMD 57
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCR-----KMLTEEKIELQLGVNHMGHFL 256
+A S+ E +++ +++ AG++ R KM E EL L VN G FL
Sbjct: 58 VADPASVERGFAEALAHLGRLDGVVHYAGIT--RDNFHWKM-PLEDWELVLRVNLTGSFL 114
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
+ +A S +E P I+ +S N
Sbjct: 115 VA-------KA-ASEA----------MREKNPGSIVLTASRV---YLGN----------- 142
Query: 317 PTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
QA Y S V TR LA L GI VN + PG + T
Sbjct: 143 LGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETR 184
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 109 bits (274), Expect = 1e-27
Identities = 45/229 (19%), Positives = 72/229 (31%), Gaps = 47/229 (20%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
++ +TG+ +GIG A+ LA+ VI R E DL
Sbjct: 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIE-------------------ADL 42
Query: 203 ASQESI-RAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
++ A A + + ++ L+ AGV T L + VN+ G L L
Sbjct: 43 STPGGRETAVAAVLDRCGGVLDGLVCCAGVGV-----TAANSGLVVAVNYFGVSALLDGL 97
Query: 262 LDKLQA---------NLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSE 312
+ L + + + +A ++G
Sbjct: 98 AEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIELAEQQGQ--------- 148
Query: 313 NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
AY SK A R G G+ +N V PG V T +L+
Sbjct: 149 ----THLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQA 193
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 108 bits (272), Expect = 4e-27
Identities = 51/219 (23%), Positives = 91/219 (41%), Gaps = 35/219 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ +TGA +G G+A AR A+ +++ R ++ + E L +K + VL D
Sbjct: 21 SSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGE--LSAKTR-VLPLTLD 77
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTE---EKIELQLGVNHMGHFLLT 258
+ + ++ A + + +E + LINNAG++ + + + N G T
Sbjct: 78 VRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYST 137
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
LLL +L A+ A + I+N+ SVA K Y +
Sbjct: 138 RLLLPRLIAH-----------------GAGASIVNLGSVAGKW------------PYPGS 168
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Y +K F+ L L+GTG+ V + PG+ ++
Sbjct: 169 HVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESE 207
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 107 bits (270), Expect = 4e-27
Identities = 67/227 (29%), Positives = 100/227 (44%), Gaps = 51/227 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VTG+ GIG+AIA +LA + VI+ ++ + +E + + +
Sbjct: 7 GKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEE-IANKYGVKAHGVEMN 65
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
L S+ESI EE+ I++L+NNAG++ R L + E L VN G FL+
Sbjct: 66 LLSEESINKAFEEIYNLVDGIDILVNNAGIT--RDKLFLRMSLLDWEEVLKVNLTGTFLV 123
Query: 258 T------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
T M+ K R+ RI+N+SSV G N
Sbjct: 124 TQNSLRKMI---K-----QRW----------------GRIVNISSVVGFTG--N------ 151
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Q Y+ +K + FT+ LAK L + VNAV PG + TD
Sbjct: 152 -----VGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETD 193
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 109 bits (274), Expect = 5e-27
Identities = 56/240 (23%), Positives = 99/240 (41%), Gaps = 43/240 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMA--CRDLDKCEKAR------KEVV--LESK 191
GK+ +TGA G G+ A LA+ A ++ CR + A+ KE V +E +
Sbjct: 46 GKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ 105
Query: 192 NKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGV 249
+ ++ R+ D+ S++A +E E I++L++N G+S +++ T+++ L
Sbjct: 106 GRRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQT 165
Query: 250 NHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDL 309
N +G + +L + + +I VSS RG
Sbjct: 166 NLIGAWHACRAVLPSMIER-GQG----------------GSVIFVSSTVGLRGA------ 202
Query: 310 NSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368
P Q+ Y SK LA + I VN+V+PG VNT++ + +
Sbjct: 203 -------PGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNEKLLKMF 255
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 108 bits (271), Expect = 5e-27
Identities = 53/230 (23%), Positives = 92/230 (40%), Gaps = 47/230 (20%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKE-----VVLESKNKYV 195
R + +VTGA +GIG+A++ LA A V D ++ +
Sbjct: 6 RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNH 65
Query: 196 LCRKCDLASQESIRAFAEEVKKENKKI-NVLINNAGVSGCR-----KMLTEEKIELQLGV 249
+ D++ + R E+V+ + +V+++ AG++ + M +E+ + + V
Sbjct: 66 AAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGIT--QDEFLLHM-SEDDWDKVIAV 122
Query: 250 NHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPS-RIINVSSVAHKRGTINKED 308
N G FL+T QA ++ + + IIN+SS+ K G N
Sbjct: 123 NLKGTFLVT-------QA-AAQALV----------SNGCRGSIINISSIVGKVG--N--- 159
Query: 309 LNSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Q Y SK + T+ A+ L GI N+V PG + T
Sbjct: 160 --------VGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATP 201
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 106 bits (266), Expect = 5e-27
Identities = 37/231 (16%), Positives = 74/231 (32%), Gaps = 61/231 (26%)
Query: 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRK 199
+ +++ GA+ +G A+ L K+ A+VI A R V
Sbjct: 1 SNAMKILLIGASGTLGSAVKERLEKK-AEVITAGR--------HSGDV-----------T 40
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLL 257
D+ + +SI+ E+V K++ +++ G + LT EK + + G L
Sbjct: 41 VDITNIDSIKKMYEQV----GKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINL 96
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
+L +D L + + +
Sbjct: 97 VLLGIDSLNDK--------------------GSFTLTTGIMMEDPI-------------V 123
Query: 318 TQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDS 367
A + A F + A + GI +N V P ++ + +++
Sbjct: 124 QGASAAMANGAVTAFAKSAAIEM-PRGIRINTVSPNVLEESWDKLEPFFEG 173
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 106 bits (268), Expect = 9e-27
Identities = 61/228 (26%), Positives = 96/228 (42%), Gaps = 53/228 (23%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIM-ACRDLDKCEKARKEVVLESKNKYVLCRKC 200
GK IVTG++ G+GKAIA +L A +++ + +E ++ V+ K
Sbjct: 5 GKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEE--FKAAGINVVVAKG 62
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFL 256
D+ + E + + +I++L+NNAG++ R L +E+ + L N +L
Sbjct: 63 DVKNPEDVENMVKTAMDAFGRIDILVNNAGIT--RDTLMLKMSEKDWDDVLNTNLKSAYL 120
Query: 257 LT------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLN 310
T ML K + +IIN++S+A G N
Sbjct: 121 CTKAVSKIML---K-----QKS----------------GKIINITSIAGIIG--N----- 149
Query: 311 SENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
QA Y SK + FT+ +AK GI NAV PGI+ TD
Sbjct: 150 ------AGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTD 191
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 106 bits (268), Expect = 9e-27
Identities = 53/227 (23%), Positives = 88/227 (38%), Gaps = 37/227 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
++ IVTGA++G+G A+ R LA+ A V+ E+ E L + ++ D
Sbjct: 7 SRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAE--LGAAVRFR---NAD 61
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLT-EEKIELQ-----LGVNHMGHF 255
+ ++ A K+E ++ L+N AG + K+L L + VN +G F
Sbjct: 62 VTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTF 121
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
+ L + + + I+N +S+A G I
Sbjct: 122 NMIRLAAEVMSQGEPD------------ADGERGVIVNTASIAAFDGQIG---------- 159
Query: 316 DPTQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
Q AY SK T A+ L GI V + PGI +T ++
Sbjct: 160 ---QAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAG 203
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 107 bits (269), Expect = 1e-26
Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 36/222 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKR---KAKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
K V++TGA+ GIGKA A E + K+I+A R L+K E+ +K + E N V
Sbjct: 33 KKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVA 92
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVS-GCRKM--LTEEKIELQLGVNHMGHF 255
+ D+ E I+ F E + +E K I++L+NNAG + G ++ + E I+ N
Sbjct: 93 QLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALI 152
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
+T +L QA S I+N+ S+A + +Y
Sbjct: 153 NITQAVLPIFQAKNS------------------GDIVNLGSIAGRD------------AY 182
Query: 316 DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Y SK A FT L K L T I V + PG+V T+
Sbjct: 183 PTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETE 224
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 106 bits (267), Expect = 1e-26
Identities = 65/227 (28%), Positives = 94/227 (41%), Gaps = 55/227 (24%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VTGA+ GIGKAIA LA+R AKVI + + +
Sbjct: 9 GKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYL-----GDNGKGMALN 63
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
+ + ESI A + + E +++L+NNAG++ R L EE+ + N F L
Sbjct: 64 VTNPESIEAVLKAITDEFGGVDILVNNAGIT--RDNLLMRMKEEEWSDIMETNLTSIFRL 121
Query: 258 T------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
+ M+ K R RIINV SV G N
Sbjct: 122 SKAVLRGMM---K-----KRQ----------------GRIINVGSVVGTMG--N------ 149
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
QA Y +K + FT+ +A+ + G+TVN V PG + TD
Sbjct: 150 -----AGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETD 191
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 106 bits (267), Expect = 1e-26
Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 51/224 (22%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
R K V+V A+ GIG+A+A L++ A+V + R+ + +++ V C
Sbjct: 18 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYV-----------VC 66
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGV--SGCRKMLTEEKIELQLGVNHMGHFLLT 258
D +R + + ++ K++++L+ NAG +G LT E + + + +
Sbjct: 67 D------LRKDLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIV 120
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L ++ + RI+ ++S +
Sbjct: 121 RNYLPAMKEK--GW----------------GRIVAITSFSVISP-------------IEN 149
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
N +++A F + L+ + GITVN V PG T+ ++
Sbjct: 150 LYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKE 193
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 106 bits (266), Expect = 2e-26
Identities = 62/228 (27%), Positives = 99/228 (43%), Gaps = 53/228 (23%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKV-IMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
K +VTGA+ GIG++IA +LA+ V + +K E +E +++K +
Sbjct: 4 TKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEE--IKAKGVDSFAIQA 61
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFL 256
++A + ++A +EV + ++VL+NNAG++ R L E++ + + N G F
Sbjct: 62 NVADADEVKAMIKEVVSQFGSLDVLVNNAGIT--RDNLLMRMKEQEWDDVIDTNLKGVFN 119
Query: 257 LT------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLN 310
ML + R IIN+SSV G N
Sbjct: 120 CIQKATPQML---R-----QRS----------------GAIINLSSVVGAVG--N----- 148
Query: 311 SENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P QA Y +K + T+ A+ L GITVNAV PG + +D
Sbjct: 149 ------PGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSD 190
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 106 bits (267), Expect = 2e-26
Identities = 66/228 (28%), Positives = 99/228 (43%), Gaps = 53/228 (23%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKV-IMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+I +VTGA+ GIG+AIA ELA AKV + ++ + + K
Sbjct: 28 DRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAA--IAAAGGEAFAVKA 85
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFL 256
D++ + + A V + +++VL+NNAG++ R L + + L +N G FL
Sbjct: 86 DVSQESEVEALFAAVIERWGRLDVLVNNAGIT--RDTLLLRMKRDDWQSVLDLNLGGVFL 143
Query: 257 LT------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLN 310
+ ML K R RIIN++SV + G N
Sbjct: 144 CSRAAAKIML---K-----QRS----------------GRIINIASVVGEMG--N----- 172
Query: 311 SENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P QA Y+ +K + T+ +AK L GITVNAV PG + TD
Sbjct: 173 ------PGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATD 214
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 106 bits (267), Expect = 2e-26
Identities = 54/230 (23%), Positives = 91/230 (39%), Gaps = 39/230 (16%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+G + ++TG +G+G A A L + A ++ E K+ L + +
Sbjct: 11 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKK--LGNNCVFA---PA 65
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--------TEEKIELQLGVNHM 252
D+ S++ ++ K + +++V +N AG++ K T E + L VN M
Sbjct: 66 DVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLM 125
Query: 253 GHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSE 312
G F + L+ ++ N Q IIN +SVA G +
Sbjct: 126 GTFNVIRLVAGEMGQN------------EPDQGGQRGVIINTASVAAFEGQVG------- 166
Query: 313 NSYDPTQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
Q AY+ SK V T +A+ L GI V + PG+ T +L
Sbjct: 167 ------QAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTS 210
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 106 bits (266), Expect = 2e-26
Identities = 63/228 (27%), Positives = 103/228 (45%), Gaps = 53/228 (23%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMAC-RDLDKCEKARKEVVLESKNKYVLCRKC 200
GK+ +VTGA+ GIG+AIA +LAK+ A V++ + K + E ++ + +
Sbjct: 4 GKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDE--IKKLGSDAIAVRA 61
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFL 256
D+A+ E + ++ ++++L+NNAGV+ + L EE+ + + N G FL
Sbjct: 62 DVANAEDVTNMVKQTVDVFGQVDILVNNAGVT--KDNLLMRMKEEEWDTVINTNLKGVFL 119
Query: 257 LT------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLN 310
T M+ + R+ RI+N++SV G N
Sbjct: 120 CTKAVSRFMM---R-----QRH----------------GRIVNIASVVGVTG--N----- 148
Query: 311 SENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P QA Y +K + T+ AK L ITVNA+ PG + TD
Sbjct: 149 ------PGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATD 190
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 106 bits (266), Expect = 2e-26
Identities = 63/227 (27%), Positives = 88/227 (38%), Gaps = 63/227 (27%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ V+VTG N GIG AIAR A KV + R + E L KCD
Sbjct: 21 SRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEGF-------------LAVKCD 67
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
+ E + +E+++ + + VLI NAGV+ + L +EE + N G F +
Sbjct: 68 ITDTEQVEQAYKEIEETHGPVEVLIANAGVT--KDQLLMRMSEEDFTSVVETNLTGTFRV 125
Query: 258 T------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
ML + ++ R++ +SSV G
Sbjct: 126 VKRANRAML---R-----AKK----------------GRVVLISSVVGLLG--------- 152
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
QA Y SK V F R LA+ L IT N V PG V+TD
Sbjct: 153 ----SAGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTD 195
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 106 bits (266), Expect = 2e-26
Identities = 58/222 (26%), Positives = 97/222 (43%), Gaps = 41/222 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMAC-RDLDKCEKARKEVVLESKNKYVLCRKC 200
+I VTG GIG +I + L K +V+ C + + K ++ ++ +
Sbjct: 13 QRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLED--QKALGFDFYASEG 70
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGV---SGCRKMLTEEKIELQLGVNHMGHFLL 257
++ +S + ++VK E +I+VL+NNAG+ RKM T E + + N F +
Sbjct: 71 NVGDWDSTKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKM-TREDWQAVIDTNLTSLFNV 129
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
T ++D + + RIIN+SSV ++G
Sbjct: 130 TKQVIDGMVER--GW----------------GRIINISSVNGQKG-------------QF 158
Query: 318 TQA-YNQSKLANVL-FTRELAKRLEGTGITVNAVHPGIVNTD 357
Q Y+ +K A + FT LA+ + G+TVN V PG + TD
Sbjct: 159 GQTNYSTAK-AGIHGFTMSLAQEVATKGVTVNTVSPGYIGTD 199
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 106 bits (266), Expect = 2e-26
Identities = 41/225 (18%), Positives = 76/225 (33%), Gaps = 43/225 (19%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIM-ACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+ ++T G+GK + +L + V + D E ++ + + + +
Sbjct: 7 VRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKET--YKDVEERLQFVQA 64
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCR-----KMLTEEKIELQLGVNHMGHF 255
D+ +E + EE KI+ LINNAG E++ + N F
Sbjct: 65 DVTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDY-EEDEWNEMIQGNLTAVF 123
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS--SVAHKRGTINKEDLNSEN 313
L L++ ++ + RIIN G
Sbjct: 124 HLLKLVVPVMRKQ--NF----------------GRIINYGFQGADSAPG--W-------- 155
Query: 314 SYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
++ + +K+ V T+ +A GIT N V PG + +
Sbjct: 156 ---IYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGE 197
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 106 bits (266), Expect = 2e-26
Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 55/227 (24%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G+ +VTGA GIG+AIAR + A V + DK ++ ++ K V +
Sbjct: 27 GRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL-----GKDVFVFSAN 81
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
L+ ++SI+ AE ++E + I++L+NNAG++ R L ++ + L VN L
Sbjct: 82 LSDRKSIKQLAEVAEREMEGIDILVNNAGIT--RDGLFVRMQDQDWDDVLAVNLTAASTL 139
Query: 258 T------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
T M+ + RY RIIN++S+ G N
Sbjct: 140 TRELIHSMM---R-----RRY----------------GRIINITSIVGVVG--N------ 167
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P Q Y +K + F++ LA+ + ITVN + PG + +
Sbjct: 168 -----PGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSA 209
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 106 bits (267), Expect = 2e-26
Identities = 47/243 (19%), Positives = 88/243 (36%), Gaps = 46/243 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMA--CRDLDKCEKAR----------KEVV-- 187
GK+ VTGA G G++ A LA+ A +I C+ + E
Sbjct: 11 GKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADL 70
Query: 188 LESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIE 244
++ N+ ++ + D+ ++++A + ++ ++++++ NAG+ L +EE
Sbjct: 71 VKGHNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWT 130
Query: 245 LQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI 304
+ +N G + + + A II SSV +
Sbjct: 131 EMIDINLAGVWKTVKAGVPHMIAG-----------------GRGGSIILTSSVGGLKAYP 173
Query: 305 NKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY 364
+ T Y +K V R L I VN+VHP V T +L +
Sbjct: 174 H------------TGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGT 221
Query: 365 YDS 367
+
Sbjct: 222 FKM 224
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 106 bits (266), Expect = 3e-26
Identities = 43/272 (15%), Positives = 71/272 (26%), Gaps = 61/272 (22%)
Query: 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVL 196
T+ + +VTGA +G++IA L V + + + N +
Sbjct: 5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNS-AI 63
Query: 197 CRKCDLAS-----------------QESIRAFAEEVKKENKKINVLINNAGV-------- 231
+ DL++ + +VL+NNA
Sbjct: 64 TVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLR 123
Query: 232 --------SGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVF 283
+ E G N + + L +A R +
Sbjct: 124 NDEDGHEPCVGDREAMETATADLFGSNAIAPYFLI-------KAFAHR-----VAGTPAK 171
Query: 284 QESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA-YNQSKLANVLFTRELAKRLEGT 342
IIN+ + Y +K A TR A L
Sbjct: 172 HRGTNYSIINMVDAMTNQPL-------------LGYTIYTMAKGALEGLTRSAALELAPL 218
Query: 343 GITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374
I VN V PG+ + ++ S V L
Sbjct: 219 QIRVNGVGPGLSVLVDDMPPAVWEGHRSKVPL 250
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 104 bits (263), Expect = 4e-26
Identities = 53/227 (23%), Positives = 84/227 (37%), Gaps = 63/227 (27%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ V+VTG N GIG AIA+ LA KV + R + + D
Sbjct: 15 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGL-------------FGVEVD 61
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
+ +++ V++ + VL++NAG+S TEEK E + N G F +
Sbjct: 62 VTDSDAVDRAFTAVEEHQGPVEVLVSNAGLS--ADAFLMRMTEEKFEKVINANLTGAFRV 119
Query: 258 T------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
M + +++ R+I + SV+ G
Sbjct: 120 AQRASRSMQ---R-----NKF----------------GRMIFIGSVSGLWG--------- 146
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
QA Y SK + R +A+ L +T N V PG ++TD
Sbjct: 147 ----IGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTD 189
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 105 bits (264), Expect = 4e-26
Identities = 58/224 (25%), Positives = 86/224 (38%), Gaps = 45/224 (20%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMAC-RDLDKCEKARKEVVLESKNKYVLCRKC 200
++ VTG G+G AI+R L V ++ D +
Sbjct: 25 KRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMH--ERDAGRDFKAYAV 82
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCR-----KMLTEEKIELQLGVNHMGHF 255
D+A ES AE+V + K++VLINNAG++ R KM T+ + + + F
Sbjct: 83 DVADFESCERCAEKVLADFGKVDVLINNAGIT--RDATFMKM-TKGDWDAVMRTDLDAMF 139
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
+T + + R+ RI+N+ SV RG
Sbjct: 140 NVTKQFIAGMVER--RF----------------GRIVNIGSVNGSRG------------- 168
Query: 316 DPTQA-YNQSKLANVL-FTRELAKRLEGTGITVNAVHPGIVNTD 357
QA Y +K A + FT+ LA GITVN V PG + T
Sbjct: 169 AFGQANYASAK-AGIHGFTKTLALETAKRGITVNTVSPGYLATA 211
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 105 bits (265), Expect = 9e-26
Identities = 43/272 (15%), Positives = 72/272 (26%), Gaps = 61/272 (22%)
Query: 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVL 196
T+ + +VTGA +G++IA L V + + + N +
Sbjct: 42 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNS-AI 100
Query: 197 CRKCDLASQES-----------------IRAFAEEVKKENKKINVLINNAGV-------- 231
+ DL++ + + +VL+NNA
Sbjct: 101 TVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLR 160
Query: 232 --------SGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVF 283
+ E G N + + L +A R +
Sbjct: 161 NDEDGHEPCVGDREAMETATADLFGSNAIAPYFLI-------KAFAHR-----VAGTPAK 208
Query: 284 QESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA-YNQSKLANVLFTRELAKRLEGT 342
IIN+ + Y +K A TR A L
Sbjct: 209 HRGTNYSIINMVDAMTNQPL-------------LGYTIYTMAKGALEGLTRSAALELAPL 255
Query: 343 GITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374
I VN V PG+ + ++ S V L
Sbjct: 256 QIRVNGVGPGLSVLVDDMPPAVWEGHRSKVPL 287
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 103 bits (259), Expect = 2e-25
Identities = 59/227 (25%), Positives = 94/227 (41%), Gaps = 53/227 (23%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+V+VTGA+ GIGKAIA L K KV++ R E+ K+ +E+ + D
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQ--IEAYGGQAITFGGD 59
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
++ + + A + I+V++NNAG++ R L + + + + +N G FL
Sbjct: 60 VSKEADVEAMMKTAIDAWGTIDVVVNNAGIT--RDTLLIRMKKSQWDEVIDLNLTGVFLC 117
Query: 258 T------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
T M+ K R RIIN++SV G N
Sbjct: 118 TQAATKIMM---K-----KRK----------------GRIINIASVVGLIG--N------ 145
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
QA Y +K + F++ A+ I VN V PG + +D
Sbjct: 146 -----IGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASD 187
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 103 bits (259), Expect = 2e-25
Identities = 48/232 (20%), Positives = 95/232 (40%), Gaps = 50/232 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+V++TGA++GIG+AIAR ++ +++ R +++ + LC + D
Sbjct: 16 KKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLPN--------TLCAQVD 67
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLG-------VNHMGH 254
+ + + +K + ++NNAG+ ML + + VN +G
Sbjct: 68 VTDKYTFDTAITRAEKIYGPADAIVNNAGM-----MLLGQIDTQEANEWQRMFDVNVLG- 121
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
LL +QA L+ + IIN+SS+A K+ +
Sbjct: 122 -LLNG-----MQAVLA-----------PMKARNCGTIINISSIAGKK------------T 152
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD 366
+ AY +K A + + + + + + V + P V T++L H++
Sbjct: 153 FPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQ 204
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 101 bits (255), Expect = 4e-25
Identities = 62/227 (27%), Positives = 96/227 (42%), Gaps = 52/227 (22%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMAC-RDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ ++TGA+ GIG+AIA LA+ + + ++ +K E+ +E + V +
Sbjct: 2 RKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEAR-RRGSPLVAVLGAN 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
L E+ A + + ++ L+NNAG++ R L +E E L N F
Sbjct: 61 LLEAEAATALVHQAAEVLGGLDTLVNNAGIT--RDTLLVRMKDEDWEAVLEANLSAVFRT 118
Query: 258 T------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
T M+ K +R+ RI+N++SV G N
Sbjct: 119 TREAVKLMM---K-----ARF----------------GRIVNITSVVGILG--N------ 146
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P QA Y SK + FTR +AK GITVNAV PG + T+
Sbjct: 147 -----PGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETE 188
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 102 bits (257), Expect = 5e-25
Identities = 53/237 (22%), Positives = 90/237 (37%), Gaps = 44/237 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIM--ACRDLDKCEKAR------KEVV--LESK 191
GK ++TG G+G++ A LA+ A + + C + D E V +E
Sbjct: 10 GKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKT 69
Query: 192 NKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGV 249
+ + K D+ + ++ +F E + I++ I NAG+S + + + + +G
Sbjct: 70 GRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGT 129
Query: 250 NHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDL 309
N G F + + + RI+ VSS+
Sbjct: 130 NLTGTFNTIAAVAPGMIK----------------RNYG--RIVTVSSMLGHSAN------ 165
Query: 310 NSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY 365
QA Y SK + T+ A L G GITVNAV PG + T + + +
Sbjct: 166 -------FAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVF 215
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 105 bits (263), Expect = 7e-25
Identities = 58/223 (26%), Positives = 93/223 (41%), Gaps = 46/223 (20%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VTGA GIG IA A+ A V+ D+D + K V + + D
Sbjct: 213 GKVAVVTGAARGIGATIAEVFARDGATVV--AIDVDGAAEDLKRVADKVGGTAL---TLD 267
Query: 202 LASQESIRAFAEEVKKEN-KKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFL 256
+ + +++ V + + K+++L+NNAG++ R L E++ + + VN +
Sbjct: 268 VTADDAVDKITAHVTEHHGGKVDILVNNAGIT--RDKLLANMDEKRWDAVIAVNLLAPQR 325
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
LT L+ E R+I +SS+A G N
Sbjct: 326 LTEGLVGNG----------------TIGEGG--RVIGLSSMAGIAG--N----------- 354
Query: 317 PTQA-YNQSKLANVL-FTRELAKRLEGTGITVNAVHPGIVNTD 357
Q Y +K A ++ LA L GIT+NAV PG + T
Sbjct: 355 RGQTNYATTK-AGMIGLAEALAPVLADKGITINAVAPGFIETK 396
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 102 bits (257), Expect = 8e-25
Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 36/228 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKY---VLCR 198
KI+++TGA++G G+ A LA +V + RD+ + E + +
Sbjct: 5 KKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTL 64
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFL 256
+ D+ SQ S+ +++ E+ +I+VLI+NAG G + T E+ +N +
Sbjct: 65 ELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQR 124
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
+ L ++ Q+ +I +SS + GT
Sbjct: 125 VNRAALPHMRR----------------QKHG--LLIWISSSSSAGGTP------------ 154
Query: 317 PTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363
P A Y +K A + A+ L GI + + PG + +
Sbjct: 155 PYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTNHFAH 202
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 102 bits (255), Expect = 2e-24
Identities = 49/227 (21%), Positives = 84/227 (37%), Gaps = 40/227 (17%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAK---VIMACRDLDKCEK-ARKEVVLESKNKYVLCR 198
+V++TG ++GIG +A LA ++ V RDL + L +
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETL 62
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFL 256
+ D+ +S+ A E V +++VL+ NAG+ G + L E+ + L VN +G
Sbjct: 63 QLDVRDSKSVAAARERV--TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVR 120
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
+ L ++ + S R++ SV G
Sbjct: 121 MLQAFLPDMKR----------------RGSG--RVLVTGSVGGLMGL------------- 149
Query: 317 PTQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS 362
P Y SK A LA L G+ ++ + G V+T +
Sbjct: 150 PFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKV 196
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 100 bits (251), Expect = 2e-24
Identities = 48/217 (22%), Positives = 82/217 (37%), Gaps = 38/217 (17%)
Query: 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLA 203
IV+VTGA G G+ I R ++ KVI R ++ ++ + E+ + + D+
Sbjct: 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL-----GDNLYIAQLDVR 56
Query: 204 SQESIRAFAEEVKKENKKINVLINNAGVS-GCRKM--LTEEKIELQLGVNHMGHFLLTML 260
++ +I + E I++L+NNAG++ G + E E + N+ G +T
Sbjct: 57 NRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRA 116
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
+L + IIN+ S A Y
Sbjct: 117 VLPGMVERNH------------------GHIINIGSTAGSW------------PYAGGNV 146
Query: 321 YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Y +K F+ L L GT + V + PG+V
Sbjct: 147 YGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGT 183
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 100 bits (251), Expect = 2e-24
Identities = 47/228 (20%), Positives = 88/228 (38%), Gaps = 39/228 (17%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
R + +VTG +G+G A + L A+V++ D+ E V+
Sbjct: 8 RDAVAVVTGGASGLGLATTKRLLDAGAQVVVL--DIR------GEDVVADLGDRARFAAA 59
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML------TEEKIELQLGVNHMGH 254
D+ + ++ + A ++ + + +++N AG ++L + + +N +G
Sbjct: 60 DVTDEAAVAS-ALDLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGS 118
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
F + L +++ +E IIN +SVA G I
Sbjct: 119 FNVLRLAAERIAKTEPVGP--------NAEERG--VIINTASVAAFDGQIG--------- 159
Query: 315 YDPTQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
Q AY+ SK V T +A+ L I V + PG+ +T +L
Sbjct: 160 ----QAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLAS 203
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 96.8 bits (242), Expect = 4e-23
Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 59/227 (25%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK ++TGA++GIG AIAR L K +KVI++ + +K + + C+
Sbjct: 14 GKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL-----KDNYTIEVCN 68
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
LA++E + +++L+ NAG++ L ++ + + +N +F+L
Sbjct: 69 LANKEECSNLISKT----SNLDILVCNAGIT--SDTLAIRMKDQDFDKVIDINLKANFIL 122
Query: 258 T------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
M+ + RY RIIN+SS+ G N
Sbjct: 123 NREAIKKMI---Q-----KRY----------------GRIINISSIVGIAG--N------ 150
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P QA Y SK + T+ L+ + GITVNAV PG + +D
Sbjct: 151 -----PGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSD 192
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 94.6 bits (236), Expect = 2e-22
Identities = 55/225 (24%), Positives = 88/225 (39%), Gaps = 45/225 (20%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
+ +VTG +G+G+A A L R +V++ DL + E ++ + D+
Sbjct: 3 RSALVTGGASGLGRAAALALKARGYRVVVL--DLRR-EGED-----------LIYVEGDV 48
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML------TEEKIELQLGVNHMGHFL 256
+E +R +E + +++ AGV K+L E L VN +G F
Sbjct: 49 TREEDVRRAVARA-QEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFN 107
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
+ L ++ N E I+N +SVA G I +
Sbjct: 108 VLRLAAWAMRENPPD------------AEGQRGVIVNTASVAAFEGQIGQ---------- 145
Query: 317 PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
AY SK V T A+ L G GI V V PG+ +T +L+
Sbjct: 146 --AAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQG 188
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 88.5 bits (220), Expect = 5e-20
Identities = 49/228 (21%), Positives = 83/228 (36%), Gaps = 39/228 (17%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
S K+ +VTGA++G G+AIA VI R + + +
Sbjct: 2 SESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLV-----AAYPDRAEAI 56
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAG--VSGCRKMLTEEKIELQLGVNHMGHFL 256
D+ E I A +V +++VL+NNAG G + TE ++ ++ G
Sbjct: 57 SLDVTDGERIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPAR 116
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
LT LL +++ S ++N+SS +
Sbjct: 117 LTRALLPQMRERGS------------------GSVVNISSFGGQLSF------------- 145
Query: 317 PTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363
+ Y+ +K A + LA + GI V V PG T++ +
Sbjct: 146 AGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGA 193
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 87.8 bits (218), Expect = 2e-19
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 42/226 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVI------MACRDLDKCEKARKEVVLESKN--- 192
G++VIVTGA GIG+A A A A+V+ A + VV E
Sbjct: 27 GRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGG 86
Query: 193 KYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCR-KML---TEEKIELQLG 248
+ V ++A + + + ++VL+NNAG+ R +M+ +EE+ + +
Sbjct: 87 EAVAD-GSNVADWDQAAGLIQTAVETFGGLDVLVNNAGI--VRDRMIANTSEEEFDAVIA 143
Query: 249 VNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKED 308
V+ GHF + A R RIIN SS A +G+
Sbjct: 144 VHLKGHFATM-----RHAAAYWRGLSKAGK-----AVDG--RIINTSSGAGLQGS----- 186
Query: 309 LNSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGI 353
Q Y+ +K T A + G+TVNA+ P
Sbjct: 187 --------VGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPSA 224
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 83.6 bits (207), Expect = 4e-18
Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 50/224 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVI-----MACRDLDKCEKARKEVVLESKN---K 193
G++V+VTGA G+G+A A A+R A V+ + + K A +VV E + K
Sbjct: 9 GRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGK 68
Query: 194 YVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCR-KML---TEEKIELQLGV 249
V + S E+ + +I+V++NNAG+ R + ++E ++ V
Sbjct: 69 AV----ANYDSVEAGEKLVKTALDTFGRIDVVVNNAGI--LRDRSFSRISDEDWDIIQRV 122
Query: 250 NHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDL 309
+ G F +T +A W + ++ RII +S + G
Sbjct: 123 HLRGSFQVT-------RA----------AWDH-MKKQNYGRIIMTASASGIYG------- 157
Query: 310 NSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPG 352
+ QA Y+ +KL + L I N + P
Sbjct: 158 ------NFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPN 195
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 82.4 bits (204), Expect = 4e-17
Identities = 64/223 (28%), Positives = 87/223 (39%), Gaps = 46/223 (20%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVI-----MACRDLDKCEKARKEVVLESKN---K 193
K+VI+TGA G+GK + E AK AKV+ A KA VV E
Sbjct: 8 DKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGV 67
Query: 194 YVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNH 251
V D + E K ++V+INNAG+ M +TE+ +L + V+
Sbjct: 68 AV----ADYNNVLDGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHL 123
Query: 252 MGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
G F +T +A W Y FQ+ RI+N SS A G
Sbjct: 124 NGAFAVT-------KA----------AWPY-FQKQKYGRIVNTSSPAGLYG--------- 156
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGI 353
+ QA Y +K A + F LAK I NA+ P
Sbjct: 157 ----NFGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPLA 195
Score = 75.5 bits (186), Expect = 8e-15
Identities = 63/260 (24%), Positives = 102/260 (39%), Gaps = 46/260 (17%)
Query: 100 CENGENLRNRVHNIVNGVIVFDVVLRGDVLGGAKYTEETSARGKIVIVTGANTGIGKAIA 159
E L+N+ ++N R A S + K+V++TGA G+GK A
Sbjct: 280 SRKPEYLKNQYPFMLNDYATLTNEARKLPANDASGAPTVSLKDKVVLITGAGAGLGKEYA 339
Query: 160 RELAKRKAKVIMACRDLDKCEKARKEVVLESKNKY--VLCRKCDLASQESIRAFAEEVKK 217
+ AK AKV++ D + V E K + D+A + A + V
Sbjct: 340 KWFAKYGAKVVVN--DFK----DATKTVDEIKAAGGEAWPDQHDVA--KDSEAIIKNVID 391
Query: 218 ENKKINVLINNAGVSGCR---KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSL 274
+ I++L+NNAG+ R KM ++++ + V+ +G F L+ +
Sbjct: 392 KYGTIDILVNNAGILRDRSFAKM-SKQEWDSVQQVHLIGTFNLS-------RL------- 436
Query: 275 CNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA-YNQSKLANVLFTR 333
W Y F E RIIN++S + G QA Y+ SK + ++
Sbjct: 437 ---AWPY-FVEKQFGRIINITSTSGIYGNFG-------------QANYSSSKAGILGLSK 479
Query: 334 ELAKRLEGTGITVNAVHPGI 353
+A I VN V P
Sbjct: 480 TMAIEGAKNNIKVNIVAPHA 499
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 79.1 bits (195), Expect = 6e-16
Identities = 49/224 (21%), Positives = 85/224 (37%), Gaps = 50/224 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIM-----ACRDLDKCEKARKEVVLESKNKYVL 196
G++ +VTGA G+G+ A A+R AKV++ ++A VV E +
Sbjct: 19 GRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGE 78
Query: 197 CRKCDLASQESIRAFAEEVK---KENKKINVLINNAGVSGCR-KML---TEEKIELQLGV 249
+A S+ A+ ++ K ++++L+NNAG+ R + L +E+ L V
Sbjct: 79 A----VADYNSVIDGAKVIETAIKAFGRVDILVNNAGI--LRDRSLVKTSEQDWNLVNDV 132
Query: 250 NHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDL 309
+ G F T QA + Y ++ RII SS + G
Sbjct: 133 HLKGSFKCT-------QA----------AFPY-MKKQNYGRIIMTSSNSGIYGNFG---- 170
Query: 310 NSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPG 352
Q Y +K+ + +A + N + P
Sbjct: 171 ---------QVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPT 205
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 61.1 bits (148), Expect = 1e-10
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 10/90 (11%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+GK +V +G A LA A+V++ R LDK + A V K
Sbjct: 118 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVT---AA 174
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAG 230
+ A S + + +
Sbjct: 175 ETADDASRAEAVKGA-------HFVFTAGA 197
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 7e-08
Identities = 68/495 (13%), Positives = 138/495 (27%), Gaps = 159/495 (32%)
Query: 15 IEVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGGIG-TTLKMLTGPSSFNL 73
++ LR AL EL + + G G G T + + S+ +
Sbjct: 134 LQPYLKLRQALLELRPAKNVL--------ID-----G---VLGSGKTWVALDVC-LSYKV 176
Query: 74 V---AFIVH-VTIGM---DTQLVFPKQKICRLF-------CENGENLRNRVHNI------ 113
F + + + ++ QK+ ++ N++ R+H+I
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 114 -------VNGVIVFDVVLRGDVLGGAKYTEETSA---RGKIVIVTGANTGIGKAIARELA 163
N ++V +V + + +A KI++ T
Sbjct: 237 LLKSKPYENCLLVLL-----NV----QNAKAWNAFNLSCKILLTT--------------- 272
Query: 164 KRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFA-------EEVK 216
R +V L + L+ + L E +++
Sbjct: 273 -RFKQVT---DFLS--AATTTHISLDHHSM-------TLTPDEVKSLLLKYLDCRPQDLP 319
Query: 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL---LDKLQANLSRYS 273
+E N +S + + + H+ LT ++ L+ L+ R
Sbjct: 320 REVLTTNPRR----LSIIAESIRDGLATWD-NWKHVNCDKLTTIIESSLNVLEPAEYRK- 373
Query: 274 LCNLIWYY----VFQESA--PSRII----------NVSSVA---HKRGTINKEDLNSENS 314
+ VF SA P+ ++ +V V HK + K
Sbjct: 374 ------MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK-QPKESTI 426
Query: 315 YDP-------TQAYNQSKLANVLFTR-ELAKRLEGTGITVNAV----------HPGIVNT 356
P + N+ L + + K + + + H
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH------ 480
Query: 357 DILRHSSYYDSW--LSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVS--GKYFACY 412
L++ + + V L +L K S+ +L+ + Y
Sbjct: 481 --LKNIEHPERMTLFRMVFLD-FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 413 D-RYEARVDGRFSFV 426
D +YE V+ F+
Sbjct: 538 DPKYERLVNAILDFL 552
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 41.9 bits (97), Expect = 7e-05
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 10/34 (29%)
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295
L KLQA+L Y+ +SAP+ I +
Sbjct: 22 LKKLQASLKLYA----------DDSAPALAIKAT 45
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 43.1 bits (102), Expect = 1e-04
Identities = 38/234 (16%), Positives = 66/234 (28%), Gaps = 59/234 (25%)
Query: 130 GGAKYTEETSARGKIVIVTGANTG-IGKAIARELAKRKAKVIMACRDLDKCEKARK---E 185
G + V GA TG +G AR + +++ R + ++ E
Sbjct: 1 GMDEQPLSRPGAHVKYAVLGA-TGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPE 59
Query: 186 VVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIEL 245
++ + + + +I +AG R +E++
Sbjct: 60 CR-----------VAEMLDHAGLERALRGL-------DGVIFSAGYYPSRPRRWQEEVA- 100
Query: 246 QLGVNHMGHFLLTMLLLDK-LQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA----HK 300
T LQA + R I+ V S H
Sbjct: 101 ---SALGQ----TNPFYAACLQARVPR-------------------ILYVGSAYAMPRHP 134
Query: 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIV 354
+G E L ++ +Y K A E A+ G+ V PG+V
Sbjct: 135 QGLPGHEGLFYDSLPSGKSSYVLCKWA----LDEQAREQARNGLPVVIGIPGMV 184
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty
acid biosynthesis II, short-chain dehydrogenase
reductase superfamily; HET: NAI; 1.80A {Yersinia pestis}
PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Length = 405
Score = 43.2 bits (101), Expect = 1e-04
Identities = 22/122 (18%), Positives = 37/122 (30%), Gaps = 11/122 (9%)
Query: 132 AKYTEETSARGKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEK--------- 181
+ K V+V GA+TG G A A A + + E
Sbjct: 37 VTTEGPIANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYN 96
Query: 182 -ARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTE 240
A K Y D S E + + +K++ +++ +I + T
Sbjct: 97 SAAFHKFAAQKGLYAKSINGDAFSDEIKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTG 156
Query: 241 EK 242
E
Sbjct: 157 EV 158
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 40.3 bits (95), Expect = 7e-04
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 132 AKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESK 191
AK G +V+VTGAN + + +L + KV R K +K +
Sbjct: 1 AKIDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYP 60
Query: 192 NKYVLCRKCDLASQESIRAFAEEVKK 217
++ D+ Q A+ E +K
Sbjct: 61 GRFETAVVEDMLKQG---AYDEVIKG 83
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 40.3 bits (95), Expect = 7e-04
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARK 184
K ++T + + K LAK + + I+ R ++ +
Sbjct: 165 EKAFVMTAGASQLCKL-IIGLAKEEGFRPIVTVRRDEQIALLKD 207
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding,
fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Length = 422
Score = 40.1 bits (93), Expect = 0.001
Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 12/122 (9%)
Query: 132 AKYTEETSARGKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEK--------- 181
+ + K V+V GA++G G A A A + +
Sbjct: 51 TRARGVRNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYN 110
Query: 182 -ARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE-NKKINVLINNAGVSGCRKMLT 239
A + ++ Y D S + E +K E ++++++ + + +
Sbjct: 111 SAAFDKHAKAAGLYSKSINGDAFSDAARAQVIELIKTEMGGQVDLVVYSLASPVRKLPGS 170
Query: 240 EE 241
E
Sbjct: 171 GE 172
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd reductase,
NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2
PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A*
2vuu_A*
Length = 352
Score = 39.4 bits (92), Expect = 0.002
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 9/77 (11%)
Query: 139 SARGKIVIVTGANTG-IGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLC 197
+ + K + V GA TG G ++ R A V L A + + N V
Sbjct: 2 AQQKKTIAVVGA-TGRQGASLIRVAAAVGHHVRAQVHSLKG-LIAEE--LQAIPN--VTL 55
Query: 198 RKCDLASQESI--RAFA 212
+ L + + F
Sbjct: 56 FQGPLLNNVPLMDTLFE 72
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 39.2 bits (92), Expect = 0.002
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEV 186
G VI +N+G+G+A ++A + I RD +K +
Sbjct: 168 GDSVIQNASNSGVGQA-VIQIAAALGLRTINVVRDRPDIQKLSDRL 212
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 39.5 bits (92), Expect = 0.003
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 142 GKIVIVTGANTG-IGKAIARELAKRKAKVIMACRDLDK 178
K V++TGA G IG + + L + AKV++ K
Sbjct: 476 DKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSK 513
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 38.5 bits (90), Expect = 0.003
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 143 KIVIVTGANTG-IGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
K+V+V G TG G ++AR L + KV + R+ K + A++ L + +
Sbjct: 6 KLVVVFGG-TGAQGGSVARTLLEDGTFKVRVVTRNPRK-KAAKE---LRLQG--AEVVQG 58
Query: 201 DLASQESIRA 210
D Q +
Sbjct: 59 DQDDQVIMEL 68
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.004
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 87 QLVFPKQKICRLFC-ENGENLRNRVHNIVNGVIVFDVVLRGDVLGGAKYTEETSARGKIV 145
+ P ++ +G +LR +I ++ D ++R V K+ T + +
Sbjct: 454 DIQIP------VYDTFDGSDLRVLSGSISERIV--DCIIRLPV----KWETTTQFKATHI 501
Query: 146 IV--TGANTGIGKAIARELAKRKAKVIMACRDLDK 178
+ G +G+G R +VI+A LD
Sbjct: 502 LDFGPGGASGLGVLTHRNKDGTGVRVIVA-GTLDI 535
Score = 36.2 bits (83), Expect = 0.024
Identities = 62/356 (17%), Positives = 105/356 (29%), Gaps = 132/356 (37%)
Query: 47 SFQSGTIVTGGIGTTLKMLTGPS--SF-NLVAFIVHVT--IGMDTQLVFPKQ----KICR 97
+ T + G+ T + + S SF V + V IG+ +P I
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE 325
Query: 98 LFCENGEN-----LRNRVHNIVNGVIVFDVVLRGDVLGGAKYTEETSARGK---IVIVTG 149
EN E L ++ + + V T GK I +V G
Sbjct: 326 DSLENNEGVPSPMLS------ISN------LTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373
Query: 150 AN----TGIGKAIAR-ELAKRKAKVIMACRDLDKCEK---ARKEVVLESKNKYVLCRKCD 201
A +G +++ L RKAK A LD+ RK N++
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAK---APSGLDQSRIPFSERKLKF---SNRF------- 420
Query: 202 LASQESIRA-F--------AEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHM 252
L + + F ++ + K+ K NV N ++Q+ V
Sbjct: 421 LP----VASPFHSHLLVPASDLINKDLVKNNVSFNAK--------------DIQIPVYDT 462
Query: 253 --GHFLLTMLLLDKLQANLSRYSLCNLI------WYYVFQESA----PSRIINVSSVAHK 300
G L L ++S + + I W E+ + I+
Sbjct: 463 FDGS------DLRVLSGSISE-RIVDCIIRLPVKW-----ETTTQFKATHIL-------- 502
Query: 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
D + P A L + +GTG+ V + G ++
Sbjct: 503 -------D------FGPGGASGLGVL--------THRNKDGTGVRV--IVAGTLDI 535
Score = 35.0 bits (80), Expect = 0.060
Identities = 44/279 (15%), Positives = 75/279 (26%), Gaps = 118/279 (42%)
Query: 38 YDCMTYVYLSFQSGTIVTGGI------GTTLKMLTGPSSF-NLVAFIVHVTIGMDTQ--- 87
Y M + + G + T I +T + F TQ
Sbjct: 1688 YSAMIFE--TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF---------TQPAL 1736
Query: 88 -LV----FPKQKICRLFCENGENLRNRVHNIVNGVIVFDVVLRGDVLGGAKYT------- 135
L+ F E+L+++ G+I D G LG +Y
Sbjct: 1737 TLMEKAAF-------------EDLKSK------GLIPADATFAGHSLG--EYAALASLAD 1775
Query: 136 ----EET----SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV 187
E RG + A+ R+ R ++A V
Sbjct: 1776 VMSIESLVEVVFYRGMT---------MQVAVPRDELGRSNYGMIAINP--------GRVA 1818
Query: 188 LESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLI---NNAG----VSG------- 233
SQE+++ E V K + V I N +G
Sbjct: 1819 AS-------------FSQEALQYVVERVGKRTGWL-VEIVNYNVENQQYVAAGDLRALDT 1864
Query: 234 ---CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANL 269
+ +KI++ L L L++++ +L
Sbjct: 1865 VTNVLNFIKLQKIDIIE--------LQKSLSLEEVEGHL 1895
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase,
INHA, enoyl acyl carrier reductase, pyrrolid
carboxamide; HET: NAD 566; 1.62A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A*
2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A*
2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A*
3fnh_A* 3oew_A* 2aqh_A* ...
Length = 269
Score = 37.6 bits (88), Expect = 0.005
Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 142 GKIVIVTG-ANTG-IGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRK 199
GK ++V+G I IAR ++ A++++ D + + + + +
Sbjct: 7 GKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLR----LIQRITDRLPAKAPLLE 62
Query: 200 CDLASQESIRAFAEEVKKE 218
D+ ++E + + A V +
Sbjct: 63 LDVQNEEHLASLAGRVTEA 81
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 37.6 bits (88), Expect = 0.005
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 142 GKIVIVTG-ANT-GIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV-----LESKNKY 194
K ++ G AN I +A+ L + AK++ R E++RKE+ L +
Sbjct: 32 NKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRK----ERSRKELEKLLEQLNQPEAH 87
Query: 195 VLCRKCDLASQESIRAFAEEVKKENKKINVLI 226
+ + D+ S E + E++ K+ I+ +
Sbjct: 88 LY--QIDVQSDEEVINGFEQIGKDVGNIDGVY 117
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 37.9 bits (88), Expect = 0.005
Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARK----EVVLESKNKYVL 196
G V++ GA+ G+G A + A A I K E R ++ + Y
Sbjct: 229 GDNVLIWGASGGLGSY-ATQFALAGGANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRF 287
Query: 197 CRKCDLASQESIRAFAEEVKK--ENKKINVLINNAG 230
+ + + + F + +++ + I+++ + G
Sbjct: 288 WKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPG 323
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 37.4 bits (87), Expect = 0.005
Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
+++ GA+ +G A+ E R +V R +K + + + + +K D++S
Sbjct: 7 IVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKV---------KKADVSS 57
Query: 205 QESIRA 210
+ +
Sbjct: 58 LDEVCE 63
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 37.7 bits (88), Expect = 0.006
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 20/95 (21%)
Query: 145 VIVTGANTGIGKAIARELAKRK-AKVIMACRDL----DKCEKARK----EVVLESKNKYV 195
I G + +GK A ++ K I RD + ++ +V+ E
Sbjct: 171 FIQNGGTSAVGKY-ASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITED----- 224
Query: 196 LCRKCDLASQESIRAFAEEVKKENKKINVLINNAG 230
S+E E +K+ + + +N G
Sbjct: 225 -----QNNSREFGPTIKEWIKQSGGEAKLALNCVG 254
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 37.2 bits (87), Expect = 0.006
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 142 GKIVIVTG-ANT-GIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV-----LESKNKY 194
G+ ++V G AN I IAR L + A++I E+ K V L+ +
Sbjct: 7 GRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAG----ERLEKSVHELAGTLDRNDSI 62
Query: 195 VLCRKCDLASQESIRAFAEEVKKENKKINVLI 226
+L CD+ + I +K++ I+ +
Sbjct: 63 IL--PCDVTNDAEIETCFASIKEQVGVIHGIA 92
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 37.2 bits (86), Expect = 0.007
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
+ +++IV G IGK I + R + +++L K
Sbjct: 2 DKKSRVLIV-GGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI 60
Query: 199 KCDLASQESIRA 210
+ L + +
Sbjct: 61 EASLDDHQRLVD 72
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 36.9 bits (85), Expect = 0.009
Identities = 10/76 (13%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Query: 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKY 194
+ V++ GA IG+ +A + R + ++ ++ ++K
Sbjct: 3 VSPVPSPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSP-SKAKIFKALEDKG 61
Query: 195 VLCRKCDLASQESIRA 210
+ + QE++
Sbjct: 62 AIIVYGLINEQEAMEK 77
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 36.8 bits (86), Expect = 0.009
Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARK 184
+++V + IG +L++ ++I R+ E+ +
Sbjct: 145 NDVLLVNACGSAIGHL-FAQLSQILNFRLIAVTRNNKHTEELLR 187
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 36.8 bits (85), Expect = 0.009
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 145 VIVTGANTG-IGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLES-KNKYVLCRKCDL 202
+++ GA TG IG+ +A+ + R+ + K +LES K +
Sbjct: 7 ILLIGA-TGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSI 65
Query: 203 ASQESIRA 210
S+
Sbjct: 66 DDHASLVE 73
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND
biology, protein structure initiative, midwest center
for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter
pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A*
3qy0_A* 2qmo_A
Length = 242
Score = 36.4 bits (84), Expect = 0.012
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 141 RGKIVIVTGANTGIGK-----AIARELAKRKAKVI 170
+G ++ ++ NT GK +A+ K I
Sbjct: 20 QGHMLFISATNTNAGKTTCARLLAQYCNACGVKTI 54
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 36.4 bits (84), Expect = 0.012
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYV 195
EE + KI+I G IG + + K + R ++ ++ E ++
Sbjct: 6 EENGMKSKILIF-GGTGYIGNHMVKGSLKLGHPTYVFTRP----NSSKTTLLDEFQSLGA 60
Query: 196 LCRKCDLASQESIRA 210
+ K +L E +
Sbjct: 61 IIVKGELDEHEKLVE 75
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid
biosynthesis, oxidation reduction; 1.50A {Thermus
thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Length = 261
Score = 36.4 bits (85), Expect = 0.012
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 142 GKIVIVTG-ANT-GIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV-LESKNKYVLCR 198
GK +V G N +G AIA +L + A+V ++ + E+ R E L L
Sbjct: 8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQA----ERLRPEAEKLAEALGGALLF 63
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLI 226
+ D+ E + A VK+ ++ L+
Sbjct: 64 RADVTQDEELDALFAGVKEAFGGLDYLV 91
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 35.8 bits (82), Expect = 0.013
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 169 VIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESI-------RAFA 212
+++ C + C+ ++V V+C C L + + R F+
Sbjct: 20 IVLTCPE---CKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFS 67
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: NAD;
1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A*
1vi2_A*
Length = 312
Score = 36.4 bits (85), Expect = 0.015
Identities = 31/120 (25%), Positives = 46/120 (38%), Gaps = 14/120 (11%)
Query: 114 VNGVIVFDVVLRG---DVLGGAKYTEE--TSARGKIVIVTGANTGIGKAIARELAKRKAK 168
+N ++ D LRG D G + +E RGK +++ GA G AI + A K
Sbjct: 115 INTIVNDDGYLRGYNTDGTGHIRAIKESGFDMRGKTMVLLGAG-GAATAIGAQAAIEGIK 173
Query: 169 VIM-ACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLIN 227
I R D EKA ++N + DLA Q + ++L N
Sbjct: 174 EIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASA-------DILTN 226
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid,
oxidoreductase, structural genomics; 1.90A {Burkholderia
pseudomallei 1710B}
Length = 271
Score = 36.0 bits (84), Expect = 0.016
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 142 GKIVIVTG-ANT-GIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV-LESKNKYVLCR 198
GK +++TG + I IA+ + A++ ++ + + ++ L
Sbjct: 14 GKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVG----DRFKDRITEFAAEFGSELVF 69
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLI 226
CD+A I A +K ++ L+
Sbjct: 70 PCDVADDAQIDALFASLKTHWDSLDGLV 97
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 35.8 bits (82), Expect = 0.017
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV 187
+ V GA G AI E +R +V+ RD K V
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATV 45
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 34.4 bits (79), Expect = 0.017
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 138 TSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVV 187
++A + V GA IG+ IA L V +A DL + V
Sbjct: 1 SNAMRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGV 50
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase,
oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia
coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A*
1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A*
1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Length = 265
Score = 35.6 bits (83), Expect = 0.021
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 142 GKIVIVTG-ANT-GIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV-LESKNKYVLCR 198
GK ++VTG A+ I IA+ + + A++ ++ +K + V ++ +
Sbjct: 9 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN----DKLKGRVEEFAAQLGSDIVL 64
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLI 226
+CD+A SI E+ K K + +
Sbjct: 65 QCDVAEDASIDTMFAELGKVWPKFDGFV 92
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 35.6 bits (83), Expect = 0.022
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 142 GKIVIVTG-ANT-GIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV-LESKNKYVLCR 198
GK ++ G AN I IA+ + A + + E K V + +
Sbjct: 6 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLN----ESLEKRVRPIAQELNSPYVY 61
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLI 226
+ D++ +E ++ VKK+ ++ ++
Sbjct: 62 ELDVSKEEHFKSLYNSVKKDLGSLDFIV 89
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI,
UW, decode, eonyl-(acyl-carrier-PR reductase, NAD,
oxidoreductase; HET: NAD; 1.80A {Anaplasma
phagocytophilum} PDB: 3k2e_A*
Length = 296
Score = 35.7 bits (83), Expect = 0.023
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 142 GKIVIVTG-ANT-GIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV-LESKNKYVLCR 198
GK ++ G AN + IA+ + + A+V + E +K V L L
Sbjct: 30 GKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLS----ETFKKRVDPLAESLGVKLTV 85
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLI 226
CD++ ES+ + + +E ++ ++
Sbjct: 86 PCDVSDAESVDNMFKVLAEEWGSLDFVV 113
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis} PDB:
4eit_A*
Length = 293
Score = 35.7 bits (83), Expect = 0.023
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 142 GKIVIVTG-ANT-GIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV-LESKNKYVLCR 198
GK ++ G AN I IA+ + A++ + + +K V L + +
Sbjct: 31 GKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQG----DALKKRVEPLAEELGAFVAG 86
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLI 226
CD+A SI A E ++K+ K++ L+
Sbjct: 87 HCDVADAASIDAVFETLEKKWGKLDFLV 114
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent
enoyl-ACP reductase, FABI, aquifex A VF5, structural
genomics, PSI; 2.00A {Aquifex aeolicus}
Length = 285
Score = 35.7 bits (83), Expect = 0.023
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 142 GKIVIVTG-ANT-GIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV-LESKNKYVLCR 198
GK ++TG AN I IA+ + A++ K K V + L
Sbjct: 21 GKRALITGVANERSIAYGIAKSFHREGAQLAFTYAT----PKLEKRVREIAKGFGSDLVV 76
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLI 226
KCD++ E I+ + +++ +++++
Sbjct: 77 KCDVSLDEDIKNLKKFLEENWGSLDIIV 104
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 35.9 bits (83), Expect = 0.025
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 16/93 (17%)
Query: 142 GKIVI-------------VTGANTGIGKAIARELAKRK-AK-VIMACRDLDKCEKARKEV 186
GK+V+ VTG +G +AR L + + +++ R A + V
Sbjct: 517 GKLVLTMPPVWDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELV 576
Query: 187 V-LESKNKYVLCRKCDLASQESIRAFAEEVKKE 218
L + V + CD+A +E++ + E
Sbjct: 577 AQLTAYGAEVSLQACDVADRETLAKVLASIPDE 609
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND
ligase, magnesium, nucleotide-binding; 1.85A
{Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A*
3fpa_A*
Length = 251
Score = 35.1 bits (81), Expect = 0.025
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 143 KIVIVTGANTGIGK-----AIARELAKRKAKVI 170
I++VTG TG+GK A+A + V
Sbjct: 27 TILVVTGTGTGVGKTVVCAALASAARQAGIDVA 59
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 34.9 bits (80), Expect = 0.028
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVL 188
+ + GA G I E R +V R+ K + K++ +
Sbjct: 3 IGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINI 46
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 35.4 bits (82), Expect = 0.031
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKY 194
+V G IG+A+ +E+ KR + + +D E E+V + ++ +
Sbjct: 34 SQSRFLVLGGAGSIGQAVTKEIFKRNPQKLHV---VDISENNMVELVRDIRSSF 84
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 35.2 bits (82), Expect = 0.032
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 114 VNGVIVFDVVLRG---DVLGGAKYTEET--SARGKIVIVTGANTGIGKAIARELAKRKAK 168
VN V + G D +G K + + K ++V GA G +A+ L K AK
Sbjct: 96 VNTVKFENGKAYGYNTDWIGFLKSLKSLIPEVKEKSILVLGAG-GASRAVIYALVKEGAK 154
Query: 169 VIMACRDLDKCEKARKEVVLESKNK 193
V + R +K K ++ LE N
Sbjct: 155 VFLWNRTKEKAIKLAQKFPLEVVNS 179
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 35.0 bits (81), Expect = 0.033
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLE 189
V+V GAN + + + EL + + + R+ ++ + R+ +
Sbjct: 24 VLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASD 68
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 34.5 bits (79), Expect = 0.051
Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEK--ARKEVVLESKNKYVLCRKCDL 202
+++ G IG+ I K R ++E++ ++ V+ + D+
Sbjct: 5 ILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDI 64
Query: 203 ASQESIRA 210
E++
Sbjct: 65 NDHETLVK 72
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 33.8 bits (78), Expect = 0.062
Identities = 5/34 (14%), Positives = 18/34 (52%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDK 178
+ + G+ +GK++ + L+ ++ R +++
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQ 36
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 34.1 bits (78), Expect = 0.063
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLES-KNKYVLCRKCD 201
+ +I+ G IGK + R + R L + E ++ V + +
Sbjct: 5 EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGE 64
Query: 202 LASQESIRA 210
+ E + +
Sbjct: 65 MEEHEKMVS 73
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 34.1 bits (78), Expect = 0.071
Identities = 6/43 (13%), Positives = 19/43 (44%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARK 184
++ T A + +G+ + + K K++ R ++ + +
Sbjct: 172 HSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKA 214
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 34.1 bits (77), Expect = 0.074
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 140 ARGKIVIV-TGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
A ++++ +G + + L KV +ACR L+ +K V ++
Sbjct: 2 ATKSVLMLGSG---FVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV------QHSTPI 52
Query: 199 KCDLASQESIRAFAEEV 215
D+ ++ A +
Sbjct: 53 SLDVNDDAALDAEVAKH 69
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural
genomics of infec diseases, csgid, ligase; 1.52A
{Francisella tularensis subsp}
Length = 228
Score = 33.9 bits (78), Expect = 0.074
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 5/33 (15%)
Query: 143 KIVIVTGANTGIGK-----AIARELAKRKAKVI 170
K + G +T +GK + + K +
Sbjct: 5 KKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSL 37
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 33.3 bits (75), Expect = 0.088
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEV 186
++ ++ G +GK +A LA ++++ R +K E E
Sbjct: 2 RVALL-GGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEY 44
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent,
NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET:
NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB:
2aw5_A
Length = 555
Score = 33.9 bits (78), Expect = 0.099
Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 25/151 (16%)
Query: 104 ENLRNRVHNIVNGVIVFDVVLRGDVLGGAKYTEETSARGKIVIV--TGANTGIGKAIARE 161
RN+ + + V +L + T+ + ++ A GI I
Sbjct: 245 HKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMA 304
Query: 162 LAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK---- 217
+ K E+A K + + ++ + L FA E +
Sbjct: 305 MQKEGVSK----------EEAIKRIWMVDSKGLIVKGRASL--TPEKEHFAHEHCEMKNL 352
Query: 218 ----ENKKINVLINNAGVSGCRKMLTEEKIE 244
++ K VLI GV+ T++ ++
Sbjct: 353 EDIVKDIKPTVLI---GVAAIGGAFTQQILQ 380
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 33.9 bits (78), Expect = 0.11
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEK 181
K V+V GA G GKA+A ++ AKV++A R ++ +
Sbjct: 361 PLASKTVVVIGAG-GAGKALAYGAKEKGAKVVIANRTYERALE 402
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 33.7 bits (78), Expect = 0.11
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARK 184
G+ V+V GA GIG A A ++AK AKVI E +
Sbjct: 160 GETVLVLGAAGGIGTA-AIQIAKGMGAKVIAVVNRTAATEFVKS 202
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 33.3 bits (76), Expect = 0.12
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKR--KAKVIMACRDLDKCEKARKEVVLESKNKYVL 196
SA V+VTGA+ G+ + ++L + K R EK E +
Sbjct: 1 SANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADV-------- 52
Query: 197 CRKCDLASQESIRA 210
D+ +SI
Sbjct: 53 -FIGDITDADSINP 65
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid; HET: NAD SKM; 1.45A
{Listeria monocytogenes} PDB: 3toz_A*
Length = 315
Score = 33.4 bits (77), Expect = 0.12
Identities = 20/90 (22%), Positives = 28/90 (31%), Gaps = 9/90 (10%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIM-ACRDLDKCEKARKEVVLESKNKYVLC 197
GK + + GA G AI + A K I R D A K V +
Sbjct: 151 DIIGKKMTICGAG-GAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKA 209
Query: 198 RKCDLASQESIRAFAEEVKKENKKINVLIN 227
+ D+ E +R E + N
Sbjct: 210 QLFDIEDHEQLRKEIAES-------VIFTN 232
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 33.4 bits (77), Expect = 0.13
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 6/81 (7%)
Query: 137 ETSARGKIVIVTGANTG-IGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYV 195
+ K V G TG + + + L ++ V RD D +K + L+
Sbjct: 4 QHPIGKKTACVVGG-TGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLK 62
Query: 196 LCRKCDLASQESIRAFAEEVK 216
+ + DL + S F +
Sbjct: 63 IF-RADLTDELS---FEAPIA 79
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 33.0 bits (76), Expect = 0.13
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 13/73 (17%)
Query: 143 KIVIVTGANTG-IGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
I+ +TGA TG +G I + + R++ EK + V R+
Sbjct: 2 NIM-LTGA-TGHLGTHITNQAIANHIDHFHIGVRNV---EKVPDD-----WRGKVSVRQL 51
Query: 201 DLASQESIR-AFA 212
D +QES+ AF
Sbjct: 52 DYFNQESMVEAFK 64
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 33.3 bits (76), Expect = 0.13
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARK 184
G IV++ GA+ G+G A + K + K R
Sbjct: 221 GDIVLIWGASGGLGSY-AIQFVKNGGGIPVAVVSSAQKEAAVRA 263
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 33.3 bits (77), Expect = 0.14
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 142 GKIVIVTGANTGIGKAIARELAKR-KAKVIMACRDLDKCEKARK 184
G+ V+V A +G A A ++A+ +V+ A +K
Sbjct: 126 GEKVLVQAAAGALGTA-AVQVARAMGLRVLAAASRPEKLALPLA 168
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 33.8 bits (77), Expect = 0.14
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 135 TEETSARGKIVIVTGANTG-IGKAIARELAKRKAKVIMACRDLDK 178
+ + K V++TGA G IG + + L + AKV++ K
Sbjct: 668 FNGVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSK 712
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 33.0 bits (76), Expect = 0.15
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 13/72 (18%)
Query: 145 VIVTGANTG-IGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ VTGA TG +G + + L K+ ++I R++ EKA L + V R D
Sbjct: 3 IAVTGA-TGQLGGLVIQHLLKKVPASQIIAIVRNV---EKAST---LADQG--VEVRHGD 53
Query: 202 LASQESIR-AFA 212
ES++ AFA
Sbjct: 54 YNQPESLQKAFA 65
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 32.7 bits (75), Expect = 0.16
Identities = 9/69 (13%), Positives = 18/69 (26%), Gaps = 14/69 (20%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARK---EVVLESKNKYVLCRKCD 201
+ + GA G + + +V + RD + VV D
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVV-----------VGD 54
Query: 202 LASQESIRA 210
+ +
Sbjct: 55 VLQAADVDK 63
>1ete_A FLT3 ligand; four-helix bundle, cytokine; 2.20A {Homo sapiens}
SCOP: a.26.1.2 PDB: 3qs7_A* 3qs9_A
Length = 134
Score = 31.7 bits (71), Expect = 0.17
Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 6/108 (5%)
Query: 256 LLTMLLLD---KLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSE 312
L LL D + +NL LC +W V + R+ +VA + E +N+E
Sbjct: 22 LSDYLLQDYPVTVASNLQDDELCGGLWRLVLAQRWMERL---KTVAGSKMQGLLERVNTE 78
Query: 313 NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
+ A+ +++ L+ T + A+ P I + R
Sbjct: 79 IHFVTKCAFQPPPSCLRFVQTNISRLLQETSEQLVALKPWITRQNFSR 126
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 33.4 bits (76), Expect = 0.17
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 135 TEETSARGKIVIVTGANTG-IGKAIARELAKRKAKVIMACRDLDK 178
+ +GK ++TGA G IG + + L AKVI+ +
Sbjct: 645 RSGLTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSR 689
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH
BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella
tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 32.6 bits (75), Expect = 0.18
Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 142 GKIVIVTG-ANT-GIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRK 199
GK +++TG + I IA+ + + A++ + + + +++ E VL
Sbjct: 26 GKKILITGLLSNKSIAYGIAKAMHREGAELAFTY--VGQFKDRVEKLCAEFNPAAVL--P 81
Query: 200 CDLASQESIRAFAEEVKKENKKINVLI 226
CD+ S + I+ E+ K ++ ++
Sbjct: 82 CDVISDQEIKDLFVELGKVWDGLDAIV 108
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 32.9 bits (76), Expect = 0.18
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 145 VIVTGANTGI-GKAIARELAKRKAKVI 170
IV GA G+ G AIAR LA +V+
Sbjct: 7 CIVIGA--GVVGLAIARALAAGGHEVL 31
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 32.6 bits (75), Expect = 0.18
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 145 VIVTGANTG-IGKAIARELAKR--KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ +TGA TG +G + L K ++++ R+ KA+ L ++ + R+ D
Sbjct: 2 IAITGA-TGQLGHYVIESLMKTVPASQIVAIVRNP---AKAQA---LAAQG--ITVRQAD 52
Query: 202 LASQESIR-AFA 212
+ ++ A
Sbjct: 53 YGDEAALTSALQ 64
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 32.8 bits (74), Expect = 0.20
Identities = 11/79 (13%), Positives = 22/79 (27%), Gaps = 14/79 (17%)
Query: 143 KIVIVTGANTGIGKAIARELAK-----RKAKVIMACRDLDKCEKARKEVVLESKNKYVLC 197
+ ++ G IG ++A L KV R +
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQ------- 54
Query: 198 RKCDLASQESIRAFAEEVK 216
CD++ + +A +
Sbjct: 55 --CDISDPDDSQAKLSPLT 71
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 32.8 bits (75), Expect = 0.21
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 145 VIVTGANTGIGKAIARELAKRKAK--VIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
V+VTG GIG +AR LA++ A V+ + R D A LE V CD
Sbjct: 242 VLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDA 301
Query: 203 ASQESIRAFAEEVKKE 218
A +E++ A E+ ++
Sbjct: 302 ADREALAALLAELPED 317
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 32.7 bits (75), Expect = 0.22
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Query: 122 VVLRGDVLGGA---KYTEETSAR----GKIVIVTGANTGIGKAIARELAKRKAK--VIMA 172
+ LR D + G + + V+VTG G+G IAR LA+R A ++++
Sbjct: 199 LALRADGVYGRRWVRAAAPATDDEWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVS 258
Query: 173 CRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218
D LE+ CD+ +ES+R + +
Sbjct: 259 RSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDD 304
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 32.2 bits (74), Expect = 0.23
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKE 185
K++I+ G +AR + RK V++ +D + CE+ K+
Sbjct: 2 KVIIIGGET--TAYYLARSMLSRKYGVVIINKDRELCEEFAKK 42
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.1 bits (72), Expect = 0.24
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 19/67 (28%)
Query: 160 RELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS-----QESIRAFAEE 214
R+ + + K + ++LD K ++ E K DL E + E+
Sbjct: 88 RKWREEQRKRL---QELDAASKVMEQEWREKAKK-------DLEEWNQRQSEQV----EK 133
Query: 215 VKKENKK 221
K N+
Sbjct: 134 NKINNRI 140
Score = 29.7 bits (66), Expect = 1.4
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 19/53 (35%)
Query: 206 ESIRAFAEEVKK--------ENKKINVLINNAGVSGCRKMLTE------EKIE 244
ESIR + EE +K A +K L E E++E
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKA-----KKDLEEWNQRQSEQVE 132
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: a.2.15.1
Length = 92
Score = 30.4 bits (68), Expect = 0.24
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 164 KRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223
+R+ + C +L K EK R++++ E K + L + IR +E+ K ++
Sbjct: 11 ERRPFLASECTELPKAEKWRRQIIGEISKKVAQIQNAGL-GEFRIRDLNDEINKLLREKG 69
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 32.2 bits (74), Expect = 0.26
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 139 SARGKIVIVTGANTG-IGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLE-SKNKYVL 196
++ + V VTGA +G IG + L +R V RD +K + + L ++ L
Sbjct: 2 GSQSETVCVTGA-SGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTL 60
Query: 197 CRKCDLASQESIRAFAEEVK 216
K DLA + S F E +K
Sbjct: 61 W-KADLADEGS---FDEAIK 76
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction,
structural genomics, NPPSFA; 2.25A {Geobacillus
kaustophilus}
Length = 297
Score = 32.1 bits (74), Expect = 0.30
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIM-ACRDLDKCEKARKEV 186
GK ++V GA G + I L A+ I A R ++K E+ +E
Sbjct: 140 DGKRILVIGAG-GGARGIYFSLLSTAAERIDMANRTVEKAERLVREG 185
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase;
0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A*
1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A*
1dak_A* 1dam_A* 1dbs_A 1dts_A
Length = 224
Score = 31.6 bits (72), Expect = 0.32
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 143 KIVIVTGANTGIGK-----AIARELAKRKAKVI 170
K VTG +T +GK A+ + +
Sbjct: 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTA 34
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4
chimera; alpha-helical coiled coil, disorder, salt
links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB:
1nkn_A 3bat_A
Length = 89
Score = 29.9 bits (67), Expect = 0.32
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 160 RELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219
E+ ++ ++ DL K E+ +KE LE +N +L +K DL ++ ++V++
Sbjct: 14 EEMKEQLKQMDKMKEDLAKTERIKKE--LEEQNVTLLEQKNDLFGS--MKQLEDKVEELL 69
Query: 220 KKINVLINNAGVSGCRKMLTEEKIE 244
K L N ++ +
Sbjct: 70 SKNYHLEN-------EVARLKKLVG 87
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 31.8 bits (73), Expect = 0.36
Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 30/112 (26%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
++TGA+ +G ++R L++R + + + + ++ K DL
Sbjct: 3 TLITGASGQLGIELSRLLSERH-----------------EVIKVYNSSEIQGGYKLDLTD 45
Query: 205 QESIRAFAEEVKKENKKINVLINNAG---VSGCRKMLTEEKIELQLGVNHMG 253
+ F + + +V+IN A V C E + E +N
Sbjct: 46 FPRLEDFIIKK-----RPDVIINAAAMTDVDKC-----EIEKEKAYKINAEA 87
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 31.7 bits (72), Expect = 0.40
Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 15/70 (21%)
Query: 145 VIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKC---EKARKEVVLESKNKYVLCRKC 200
V++ GA I + + +LA ++ K + R K +++
Sbjct: 26 VLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQII-----------MG 74
Query: 201 DLASQESIRA 210
D+ + +++
Sbjct: 75 DVLNHAALKQ 84
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 31.8 bits (72), Expect = 0.40
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 121 DVVLRGDVLGGAKYTEETSARGKIVIVTGANTG-IGKAIARELAKR---KAKVIMACR 174
D + D L A S + V++TGA TG +G+ + EL +R ++I R
Sbjct: 52 DRFIDADTLATAVNLPGPSPELRTVLLTGA-TGFLGRYLVLELLRRLDVDGRLICLVR 108
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 30.2 bits (68), Expect = 0.51
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 161 ELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQ-----ESIRAFAEEV 215
E+A K + L+K E RKE LE K +L K DL Q +++ E
Sbjct: 14 EMASMKEEFTRLKEALEKSEARRKE--LEEKMVSLLQEKNDLQLQVQAEQDNLADAEERC 71
Query: 216 KKENKK 221
+ K
Sbjct: 72 DQLIKN 77
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 31.3 bits (71), Expect = 0.59
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 144 IVIVTGANTGIGKAIARELAKRKAK-VIMACR---DLDKCEKARKEVVLESKNKYVLCRK 199
V++TG IG+ +AR LA A+ +++ R + + +E L V+
Sbjct: 261 TVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEE--LRGHGCEVVHAA 318
Query: 200 CDLASQESIRAFAEEV 215
CD+A ++++ A
Sbjct: 319 CDVAERDALAALVTAY 334
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 31.0 bits (71), Expect = 0.60
Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 36/112 (32%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
+++TGAN +G+ I ++L + +VI D + D+ +
Sbjct: 15 ILITGANGQLGREIQKQLKGKNVEVI----PTDVQD-------------------LDITN 51
Query: 205 QESIRAFAEEVKKENKKINVLINNAG---VSGCRKMLTEEKIELQLGVNHMG 253
++ F E K NV+IN A V C EE+ +L +N +G
Sbjct: 52 VLAVNKFFNEK-----KPNVVINCAAHTAVDKC-----EEQYDLAYKINAIG 93
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 31.4 bits (71), Expect = 0.69
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 145 VIVTGANTGIGKAIARELAKRKAK--VIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
++TG G G +A+ L R A+ V+ + + +AR+ + VL +
Sbjct: 1887 YVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNA 1946
Query: 203 ASQESIRAFAEEVKKE 218
+S + R+ E +
Sbjct: 1947 SSLDGARSLITEATQL 1962
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 31.0 bits (71), Expect = 0.77
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARK 184
G V+V A +G+ A A ++AK A+VI DK +A+
Sbjct: 167 GDDVLVMAAGSGVSVA-AIQIAKLFGARVIATAGSEDKLRRAKA 209
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 31.0 bits (69), Expect = 0.78
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 9/80 (11%)
Query: 137 ETSARGKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEVVLESKNKYV 195
E GK V++ G+ + + + LA V +ACR L + +K
Sbjct: 18 EGRHMGKNVLLLGSG-FVAQPVIDTLAANDDINVTVACRTLANAQAL-------AKPSGS 69
Query: 196 LCRKCDLASQESIRAFAEEV 215
D+ ++ +
Sbjct: 70 KAISLDVTDDSALDKVLADN 89
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 30.4 bits (68), Expect = 0.81
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 136 EETSARG-KIVIV-TGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKE 185
E +G KI ++ TG +G+ +A LA +V + RD +
Sbjct: 13 ENLYFQGMKIAVLGTGT---VGRTMAGALADLGHEVTIGTRDPKATLARAEP 61
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 30.4 bits (68), Expect = 0.98
Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 145 VIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKAR 183
+ + GA I + + L + + R L
Sbjct: 8 ITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPE 47
>2gh0_A GFR-alpha-3, GDNF family receptor alpha-3; cystine-knot, helix
bundle, hormone-growth factor complex; HET: NAG BMA MAN;
1.92A {Homo sapiens}
Length = 213
Score = 30.1 bits (67), Expect = 1.0
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Query: 168 KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215
K M C DKC++ RK + C + F E+
Sbjct: 14 KFAMLCTLNDKCDRLRKAYGEACSGPHCQRHVC----LRQLLTFFEKA 57
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 30.7 bits (69), Expect = 1.0
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 114 VNGVIVFDVVLRGDVLGGAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMAC 173
+ G+ + + G VL + + E G+ V+V G + + R L I
Sbjct: 184 IKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGAS-SANDLVRHLTPVAKHPIYQS 242
Query: 174 R 174
Sbjct: 243 L 243
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 30.3 bits (68), Expect = 1.1
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKAR 183
G V V G +G ++AR+ A AKV + R+ D +
Sbjct: 154 HGANVAVLGLG-RVGMSVARKFAALGAKVKVGARESDLLARIA 195
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 30.3 bits (69), Expect = 1.2
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 135 TEETSARGKIVIVTGANTG-IGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNK 193
+ G+++IVTG G IG I + L + I+ +D + K V L N
Sbjct: 39 GGGSGIEGRMIIVTGGA-GFIGSNIVKALNDKGITDILV---VDNLKDGTKFVNLVDLNI 94
Query: 194 YVLCRKCDLASQESIRAFAEEV 215
K D Q +V
Sbjct: 95 ADYMDKEDFLIQIMAGEEFGDV 116
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 29.5 bits (67), Expect = 2.0
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARK 184
G+ V+V GA+ G+G A ++A+ K++ + + +
Sbjct: 171 GESVLVHGASGGVG-LAACQIARAYGLKILGTAGTEEGQKIVLQ 213
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 29.5 bits (67), Expect = 2.1
Identities = 10/26 (38%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVI 170
+V G IG AIA LAK
Sbjct: 20 AVVIGGG-IIGSAIAYYLAKENKNTA 44
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein
structure initiati structural genomics research
consortium, nysgrc; 2.45A {Rhizobium etli}
Length = 353
Score = 29.5 bits (67), Expect = 2.1
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 20/95 (21%)
Query: 140 ARGKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
G+ V++ G +GIG A +LA+ A+V KCE C
Sbjct: 166 TEGESVLIHGGTSGIGTT-AIQLARAFGAEVYATAGSTGKCE---------------ACE 209
Query: 199 K--CDLASQESIRAFAEEVKKENKK-INVLINNAG 230
+ FA +K E + ++++++ G
Sbjct: 210 RLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIG 244
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 28.4 bits (64), Expect = 2.3
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 145 VIVTGANTG-IGKAIARELAKRKAKVIMACRDLDKCEKARKEVVL 188
IV G+ G + REL KV+ + +K E E
Sbjct: 9 YIVIGS--EAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFD 51
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus
anthracis}
Length = 287
Score = 29.0 bits (66), Expect = 2.5
Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 36/112 (32%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
VI+TGAN +GK + EL + + + D+ +
Sbjct: 8 VIITGANGQLGKQLQEELNPEEYDIYPFDKK-----------------------LLDITN 44
Query: 205 QESIRAFAEEVKKENKKINVLINNAG---VSGCRKMLTEEKIELQLGVNHMG 253
++ +E+ + +++I+ A V E++ +L +N +G
Sbjct: 45 ISQVQQVVQEI-----RPHIIIHCAAYTKVDQA-----EKERDLAYVINAIG 86
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 29.4 bits (66), Expect = 2.5
Identities = 16/87 (18%), Positives = 23/87 (26%), Gaps = 13/87 (14%)
Query: 145 VIVTGANTGIGKAIARELAKRKAK--VIMACRDLDKCEKARKEVV-----------LESK 191
V+VTGA AR LA+ A ++ + + L
Sbjct: 254 VLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADL 313
Query: 192 NKYVLCRKCDLASQESIRAFAEEVKKE 218
CDL E+ V
Sbjct: 314 GATATVVTCDLTDAEAAARLLAGVSDA 340
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 28.9 bits (64), Expect = 2.7
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 135 TEETSARGKIVIVTGANTG-IGKAIARELAKRKAKVIMACRDLDKCEKARKEV 186
T ++S + +V + G TG GK++ ++ + V+ R+ +
Sbjct: 12 TVDSSEKQGVVCIFG--TGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGA 62
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 29.3 bits (66), Expect = 2.8
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 145 VIVTGANTGI-GKAIARELAKRKAKVIM 171
V+V G G G A A ++A+R +V++
Sbjct: 7 VVVVGG--GPVGLATAWQVAERGHRVLV 32
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 29.0 bits (64), Expect = 2.8
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
GK V+ G +GI +A A+ A+ + A + AR V + + V +
Sbjct: 63 EGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEG 119
Query: 201 D 201
Sbjct: 120 S 120
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein;
structural genomics, oxidoreductase, amino-acid
biosynthesis; 2.10A {Clostridium acetobutylicum}
Length = 282
Score = 29.0 bits (66), Expect = 3.0
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAK-VIMACRDLDKCEKARKEV 186
+ I +V G+ G +A+ + L AK + + R+ +K + E
Sbjct: 121 KNNICVVLGSG-GAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEF 166
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases,
QUIN oxidoreductase, oxidative stress response; HET:
NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Length = 354
Score = 29.1 bits (66), Expect = 3.2
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 140 ARGKIVIVTGANTGIGKAIARELAKR-KAKVIMACRDLDKCEKARK 184
G V++ +G+G A A +L + A ++ K + A K
Sbjct: 161 QAGDYVLIHAGLSGVGTA-AIQLTRMAGAIPLVTAGSQKKLQMAEK 205
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein,
protein binding; 2.20A {Homo sapiens}
Length = 259
Score = 28.6 bits (64), Expect = 3.3
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 116 GVIVFDVVLRGDVLGGAKYTEETSARGKIVIVTGA--NTGIGKAIARELAKRKAKVI 170
GV + L + R + ++ G G + R LA +VI
Sbjct: 60 GVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANHDVQVI 116
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold,
sugar-nucleotide-binding domain; HET: NAD; 2.00A
{Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A*
1kc3_A* 1kbz_A*
Length = 299
Score = 28.7 bits (65), Expect = 3.8
Identities = 10/85 (11%), Positives = 28/85 (32%), Gaps = 25/85 (29%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
+++ G +G + R LA + + + C D ++
Sbjct: 3 ILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFC--------------------GDFSN 42
Query: 205 QESIRAFAEEVKKENKKINVLINNA 229
+ + ++ + +V++N A
Sbjct: 43 PKGVAETVRKL-----RPDVIVNAA 62
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein,
protein binding; 2.80A {Homo sapiens}
Length = 306
Score = 28.7 bits (64), Expect = 3.8
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 116 GVIVFDVVLRGDVLGGAKYTEETSARGKIVIVTGA--NTGIGKAIARELAKRKAKVI 170
GV + L + R + ++ G G + R LA +VI
Sbjct: 107 GVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANHDVQVI 163
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 28.5 bits (64), Expect = 4.4
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 145 VIVTGANTGI-GKAIARELAKRKAKVIM 171
+I+ G+ G G A + V+M
Sbjct: 5 LIIIGS--GSVGAAAGYYATRAGLNVLM 30
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 28.4 bits (64), Expect = 5.4
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 143 KIVIVTGANTGIGKAIAREL 162
+ ++TG IGK R L
Sbjct: 506 NVKMITGDQLAIGKETGRRL 525
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 28.4 bits (64), Expect = 5.6
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 143 KIVIVTGANTGIGKAIAREL 162
I ++TG GI + +R+L
Sbjct: 553 SIKMLTGDAVGIARETSRQL 572
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 27.7 bits (62), Expect = 5.8
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 137 ETSARGKIVIVTGANTGIGK-----AIARELAKRKAKVIMA-CRDL-DKCEKARKEVVLE 189
E + K + + G + G+GK AIA ELAKR ++ +L + + + ++ +
Sbjct: 49 EPGKKMKGLYLHG-SFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMN 107
Query: 190 SKNKYVLCRKCDL 202
K Y+ +K +
Sbjct: 108 EKLDYI--KKVPV 118
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 28.0 bits (63), Expect = 5.8
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 145 VIVTGANTGI-GKAIARELAKRKAKVIM 171
VIV GA G G A +LAK+ K ++
Sbjct: 6 VIVVGA--GSMGMAAGYQLAKQGVKTLL 31
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 28.4 bits (64), Expect = 6.2
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 138 TSARGK-IVIVTGANTGIGKAIARELA 163
+ + IV TG +T IGK I ++A
Sbjct: 216 AAGKALGIVATTGVSTEIGK-IRDQMA 241
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; HET: ATP;
2.20A {Chlorobium tepidum}
Length = 245
Score = 27.6 bits (62), Expect = 6.9
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 8/45 (17%)
Query: 139 SARGKIVIVTGANTGIGK-----AIARELAKR-KAKVIMACRDLD 177
S ++ A G G A L++ V+ D+
Sbjct: 1 SNAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAV--DIS 43
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 26.9 bits (60), Expect = 7.7
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 143 KIVIVTGANTG-IGKAIARELAKRKAKVIMACRDLDKCEKARKEVVL 188
K V G G G +I +EL + +V+ + +K
Sbjct: 7 KQFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATH 51
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex,
amino-acid biosynthesis, aromatic A biosynthesis, NAD,
oxidoreductase; HET: NAD; 1.00A {Corynebacterium
glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Length = 283
Score = 27.5 bits (62), Expect = 8.3
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 14/90 (15%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIM-ACRDLDKCEKARKEVVLESKNKYVLC 197
+A+ V+ GA G+G A+A L + + A D + + + N V
Sbjct: 124 NAKLDSVVQVGAG-GVGNAVAYALVTHGVQKLQVADLDTSRAQALADVI-----NNAVGR 177
Query: 198 RKCDLASQESIRAFAEEVKKENKKINVLIN 227
I + ++N
Sbjct: 178 EAVVGVDARGIEDVIAAA-------DGVVN 200
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 27.0 bits (60), Expect = 9.1
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKE 185
IV G + + +L +R V + + K ++
Sbjct: 6 FIVCGHSI-LAINTILQLNQRGQNVTVISNLPEDDIKQLEQ 45
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding,
nucleotide-binding, membrane, transmembrane, transport
protein; 3.00A {Methanosarcina acetivorans} SCOP:
f.58.1.1
Length = 295
Score = 27.4 bits (61), Expect = 9.7
Identities = 4/33 (12%), Positives = 11/33 (33%)
Query: 367 SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDP 399
L + L + + + +V A+ +
Sbjct: 46 LVLFLFIFLTLSNMIFEQITEDFSGLVKAAGNR 78
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 27.3 bits (61), Expect = 9.8
Identities = 29/186 (15%), Positives = 69/186 (37%), Gaps = 43/186 (23%)
Query: 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLA 203
+++VTG++ IG + LA++ K + D+ + + + + D++
Sbjct: 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFI-----------TLDVS 49
Query: 204 SQESI-RAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLL 262
+++ I RA + I+ + + AG+ + E+ L VN G T +L
Sbjct: 50 NRDEIDRAVEKY------SIDAIFHLAGILSAK---GEKDPALAYKVNMNG----TYNIL 96
Query: 263 DKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYN 322
+ ++ + +++ S++ K + S P +
Sbjct: 97 E-----AAK-------------QHRVEKVVIPSTIGVFGPETPKNKVPSITITRPRTMFG 138
Query: 323 QSKLAN 328
+K+A
Sbjct: 139 VTKIAA 144
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.394
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,541,894
Number of extensions: 403775
Number of successful extensions: 2153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1623
Number of HSP's successfully gapped: 433
Length of query: 429
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 333
Effective length of database: 4,021,377
Effective search space: 1339118541
Effective search space used: 1339118541
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.3 bits)