BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12837
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2TBR2|RM20_BOVIN 39S ribosomal protein L20, mitochondrial OS=Bos taurus GN=MRPL20
PE=1 SV=1
Length = 149
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 35 HIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
H+ LW RITA ++EHG+ YP F L + + L+RK L+DLA +EP+TFK
Sbjct: 63 HLRTLWINRITAASQEHGLKYPAFILNLIKCQVELNRKVLADLAIYEPKTFK 114
>sp|B6IPJ8|RL20_RHOCS 50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC
51521 / SW) GN=rplT PE=3 SV=1
Length = 119
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 32/49 (65%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV 87
LW RI AGA HG+ Y F GL R+ I +DRK LSD+AA EP +FK
Sbjct: 60 LWIQRINAGARLHGLTYSKFMHGLKRAGIEVDRKVLSDIAAREPESFKA 108
>sp|Q9RSW7|RL20_DEIRA 50S ribosomal protein L20 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=rplT PE=1 SV=1
Length = 118
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 33/50 (66%)
Query: 38 KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV 87
+LW RI AGA HG+ Y F GL R+NI L+RK L+D+AA EP FK
Sbjct: 59 RLWIQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKA 108
>sp|Q2VYY8|RL20_MAGSA 50S ribosomal protein L20 OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=rplT PE=3 SV=1
Length = 118
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 32/48 (66%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
LW RI AG+ +G+PY F +GL ++ I LDRK LSD+A EP FK
Sbjct: 60 LWIQRINAGSRAYGLPYSRFMDGLKKAGIALDRKVLSDIAIREPDAFK 107
>sp|A7HPK9|RL20_PARL1 50S ribosomal protein L20 OS=Parvibaculum lavamentivorans (strain
DS-1 / DSM 13023 / NCIMB 13966) GN=rplT PE=3 SV=1
Length = 118
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV 87
LW RI AG EHG+ Y F +GL ++ I +DRK LSD+A EP FK
Sbjct: 60 LWIQRINAGVREHGLTYSRFIDGLAKAGIEVDRKVLSDIAIHEPEAFKA 108
>sp|Q9CQL4|RM20_MOUSE 39S ribosomal protein L20, mitochondrial OS=Mus musculus GN=Mrpl20
PE=1 SV=1
Length = 149
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
LW RITA ++EHG+ YP F L + + L+RK L DLA +EP+TFK
Sbjct: 67 LWINRITAASQEHGLKYPAFIVNLIKCQVELNRKVLVDLAIYEPKTFK 114
>sp|Q9BYC9|RM20_HUMAN 39S ribosomal protein L20, mitochondrial OS=Homo sapiens GN=MRPL20
PE=1 SV=1
Length = 149
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
LW RITA ++EHG+ YP L + + L+RK L+DLA +EP+TFK
Sbjct: 67 LWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFK 114
>sp|Q8XZ26|RL20_RALSO 50S ribosomal protein L20 OS=Ralstonia solanacearum (strain
GMI1000) GN=rplT PE=3 SV=1
Length = 118
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 31/47 (65%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW ARI AGA EHG+ Y F GL +++I LDRK LSD+A + F
Sbjct: 60 LWIARINAGAREHGLSYSKFMNGLKKASIELDRKVLSDMAIHDKVAF 106
>sp|Q0ATG2|RL20_MARMM 50S ribosomal protein L20 OS=Maricaulis maris (strain MCS10)
GN=rplT PE=3 SV=1
Length = 118
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV 87
LW RI AGA +H + Y +F GLT++ I +DRK L+D+A EP FK
Sbjct: 60 LWIQRINAGARQHEMSYSVFMNGLTKAGIEVDRKVLADIAMHEPDAFKA 108
>sp|Q6KH18|RL20_MYCMO 50S ribosomal protein L20 OS=Mycoplasma mobile (strain ATCC 43663 /
163K / NCTC 11711) GN=rplT PE=3 SV=1
Length = 117
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 35 HIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
H +LW ARI A GV Y LF GL +SNI ++RK LS++A +P+ F
Sbjct: 55 HFRRLWIARINAATRAQGVSYSLFINGLKKSNIQINRKMLSEIAIHQPKVF 105
>sp|A0L4J9|RL20_MAGSM 50S ribosomal protein L20 OS=Magnetococcus sp. (strain MC-1)
GN=rplT PE=3 SV=1
Length = 117
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%)
Query: 31 NLTGHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
NL + +LW ARI A HG+ Y F GL ++ I LDRK LS+LA EP +F
Sbjct: 52 NLKREMRRLWIARINAATRLHGMSYSQFMNGLNKAGIELDRKVLSELAISEPESF 106
>sp|Q2RNH9|RL20_RHORT 50S ribosomal protein L20 OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=rplT PE=3 SV=1
Length = 125
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 29/47 (61%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW RI AGA E G+ Y F GL R+ I LDRK L+DLA EP F
Sbjct: 60 LWIQRINAGAREQGLTYSQFINGLIRAGIELDRKILADLAVTEPAAF 106
>sp|C1D0Q8|RL20_DEIDV 50S ribosomal protein L20 OS=Deinococcus deserti (strain VCD115 /
DSM 17065 / LMG 22923) GN=rplT PE=3 SV=1
Length = 117
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 38 KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV 87
+LW RI AGA HG+ Y F GL R+ + L+RK L+D+AA EP FK
Sbjct: 59 RLWVQRINAGARLHGMNYSTFIGGLKRAGVDLNRKVLADIAAREPEAFKA 108
>sp|Q3SK31|RL20_THIDA 50S ribosomal protein L20 OS=Thiobacillus denitrificans (strain
ATCC 25259) GN=rplT PE=3 SV=1
Length = 119
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW ARI A A +HG+ Y +F GL+R+ I +DRK LSD+A ++ F
Sbjct: 60 LWIARINAAARQHGLTYSVFMNGLSRAEIGVDRKVLSDIAIFDKDAF 106
>sp|B2UGJ5|RL20_RALPJ 50S ribosomal protein L20 OS=Ralstonia pickettii (strain 12J)
GN=rplT PE=3 SV=1
Length = 118
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 31/47 (65%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW ARI AGA EHG+ Y F GL +++I LDRK LSD+A + F
Sbjct: 60 LWIARINAGAREHGLTYSKFMNGLKKASIELDRKVLSDMAIHDKVAF 106
>sp|Q11UK0|RL20_CYTH3 50S ribosomal protein L20 OS=Cytophaga hutchinsonii (strain ATCC
33406 / NCIMB 9469) GN=rplT PE=3 SV=1
Length = 115
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 19 VWKTSKVCNEEINLTGHIGK---------LWTARITAGAEEHGVPYPLFREGLTRSNIML 69
VW +K E + +IG+ LW RI AG +HG+ Y F L ++NI L
Sbjct: 31 VWTVAKNAVERGKVFAYIGRKQKKRHFRGLWIQRINAGTRQHGLSYSQFIGALDKANIKL 90
Query: 70 DRKTLSDLAAWEPRTFK 86
+RK L+DLA +P FK
Sbjct: 91 NRKVLADLAMNDPEAFK 107
>sp|B2ULJ1|RL20_AKKM8 50S ribosomal protein L20 OS=Akkermansia muciniphila (strain ATCC
BAA-835) GN=rplT PE=3 SV=1
Length = 127
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 34 GHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV 87
G +LW ARI+A + G+ Y F EGL +NI LDRK L+DLA + + F V
Sbjct: 55 GQFRRLWIARISAAVRDRGLTYSRFMEGLKAANIDLDRKVLADLAVSDEKAFDV 108
>sp|A5EVM2|RL20_DICNV 50S ribosomal protein L20 OS=Dichelobacter nodosus (strain
VCS1703A) GN=rplT PE=3 SV=1
Length = 119
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 15 YYTPVWKTSKVCNEEINLTGHIG------------KLWTARITAGAEEHGVPYPLFREGL 62
YY+ KT +V + + G +LW RI AGA HG+ Y F GL
Sbjct: 24 YYSARRKTFRVAKQAVIKAGQYAYRDRKTKKRQFRQLWIIRINAGARIHGLSYSRFINGL 83
Query: 63 TRSNIMLDRKTLSDLAAWEPRTF 85
+S I +DRK LS+LA ++ F
Sbjct: 84 KKSGIAVDRKILSELAVYDKSVF 106
>sp|A4G616|RL20_HERAR 50S ribosomal protein L20 OS=Herminiimonas arsenicoxydans GN=rplT
PE=3 SV=1
Length = 119
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVKKSTVGTTMC 97
LW RI A + EHG+ Y +F GL R++I LDRK L+D+A + F + V TT+
Sbjct: 60 LWITRINAASREHGLTYSVFMNGLKRASIELDRKVLADMAVMDKPAFAAIVNQVKTTIA 118
>sp|A1KSY5|RL20_NEIMF 50S ribosomal protein L20 OS=Neisseria meningitidis serogroup C /
serotype 2a (strain ATCC 700532 / FAM18) GN=rplT PE=3
SV=1
Length = 119
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW RI AGA E+G+ Y F GL R++I +DRK L+DLA ++ F
Sbjct: 60 LWIVRINAGARENGLSYSKFMNGLKRASIEIDRKVLADLAVFDKAAF 106
>sp|Q9JVA1|RL20_NEIMA 50S ribosomal protein L20 OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=rplT PE=3 SV=1
Length = 119
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW RI AGA E+G+ Y F GL R++I +DRK L+DLA ++ F
Sbjct: 60 LWIVRINAGARENGLSYSKFMNGLKRASIEIDRKVLADLAVFDKAAF 106
>sp|A9M378|RL20_NEIM0 50S ribosomal protein L20 OS=Neisseria meningitidis serogroup C
(strain 053442) GN=rplT PE=3 SV=1
Length = 119
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW RI AGA E+G+ Y F GL R++I +DRK L+DLA ++ F
Sbjct: 60 LWIVRINAGARENGLSYSKFMNGLKRASIEIDRKVLADLAVFDKAAF 106
>sp|B4RJY6|RL20_NEIG2 50S ribosomal protein L20 OS=Neisseria gonorrhoeae (strain
NCCP11945) GN=rplT PE=3 SV=1
Length = 119
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW RI AGA E+G+ Y F GL R++I +DRK L+DLA ++ F
Sbjct: 60 LWIVRINAGARENGLSYSKFMNGLKRASIEIDRKVLADLAVFDKAAF 106
>sp|Q5F9U1|RL20_NEIG1 50S ribosomal protein L20 OS=Neisseria gonorrhoeae (strain ATCC
700825 / FA 1090) GN=rplT PE=3 SV=1
Length = 119
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW RI AGA E+G+ Y F GL R++I +DRK L+DLA ++ F
Sbjct: 60 LWIVRINAGARENGLSYSKFMNGLKRASIEIDRKVLADLAVFDKAAF 106
>sp|Q1GZS0|RL20_METFK 50S ribosomal protein L20 OS=Methylobacillus flagellatus (strain KT
/ ATCC 51484 / DSM 6875) GN=rplT PE=3 SV=1
Length = 120
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW ARI AGA E+G+ Y F GL +S + +DRK L+DLA ++ + F
Sbjct: 60 LWIARINAGAREYGLTYSRFINGLKKSAVEVDRKVLADLAVFDKQAF 106
>sp|Q5U4Z8|RM20_XENLA 39S ribosomal protein L20, mitochondrial OS=Xenopus laevis
GN=mrpl20 PE=2 SV=1
Length = 149
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
LW +RI EHG+ YP+ L + + L+RK +SD++ +EP+TFK
Sbjct: 67 LWVSRIAGATREHGMKYPMLMSNLVKCQVALNRKVISDMSIYEPKTFK 114
>sp|B1M6P4|RL20_METRJ 50S ribosomal protein L20 OS=Methylobacterium radiotolerans (strain
ATCC 27329 / DSM 1819 / JCM 2831) GN=rplT PE=3 SV=1
Length = 125
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW R+ A EHG+ Y F +GL +S I++DRK LS+LA EP +F
Sbjct: 60 LWIQRLNAAVREHGLTYSRFIDGLAKSGIVVDRKALSELAIHEPASF 106
>sp|Q7NYC3|RL20_CHRVO 50S ribosomal protein L20 OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=rplT PE=3 SV=1
Length = 119
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 38 KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
+LW ARI A A E+G+PY F GL ++ I +DRK L+DLA ++ F
Sbjct: 59 QLWIARINAAARENGLPYSKFMNGLKKAAIEIDRKVLADLAVFDKPAF 106
>sp|Q05427|RL20_MYCFE 50S ribosomal protein L20 OS=Mycoplasma fermentans GN=rplT PE=3
SV=1
Length = 116
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 38 KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
KLW ARI A G+ Y F GL R+N+ ++RK LS+LA EP+TF
Sbjct: 58 KLWIARINAATRAEGLSYSKFINGLKRANVTINRKMLSELAISEPKTF 105
>sp|Q98CP8|RL20_RHILO 50S ribosomal protein L20 OS=Rhizobium loti (strain MAFF303099)
GN=rplT PE=3 SV=1
Length = 133
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW RI A EHG+ Y F +GL ++ I +DRK LSD+A EP+ F
Sbjct: 60 LWIQRINAATHEHGLTYGRFIDGLNKAGIEIDRKILSDMAIHEPQAF 106
>sp|Q11KK1|RL20_MESSB 50S ribosomal protein L20 OS=Mesorhizobium sp. (strain BNC1)
GN=rplT PE=3 SV=1
Length = 133
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW RI A EHG+ Y F +GL ++ I +DRK L+D+A EP+ F
Sbjct: 60 LWIQRINAATREHGLTYGRFIDGLNKAGIEIDRKVLADMAVHEPQAF 106
>sp|Q1MRV6|RL20_LAWIP 50S ribosomal protein L20 OS=Lawsonia intracellularis (strain
PHE/MN1-00) GN=rplT PE=3 SV=1
Length = 117
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 17 TPVWKTSKVCNEEINLTGHIG---------KLWTARITAGAEEHGVPYPLFREGLTRSNI 67
+ +++T++ E + +IG KLW RI AGA EHG+ Y GL+++ I
Sbjct: 28 SRLYRTAREAVERSLVYAYIGRKQRKREFRKLWILRINAGAREHGLSYSKMMAGLSQAGI 87
Query: 68 MLDRKTLSDLAAWEPRTF 85
ML+RK L++LA + F
Sbjct: 88 MLNRKILAELAVKQKEDF 105
>sp|Q2SDJ5|RL20_HAHCH 50S ribosomal protein L20 OS=Hahella chejuensis (strain KCTC 2396)
GN=rplT PE=3 SV=1
Length = 118
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW ARI AGA ++G+ Y GL R+N+ +DRK L+DLA E F
Sbjct: 60 LWIARINAGARDNGLSYSRLIAGLKRANVEIDRKVLADLAMNEKAAF 106
>sp|Q1J0V8|RL20_DEIGD 50S ribosomal protein L20 OS=Deinococcus geothermalis (strain DSM
11300) GN=rplT PE=3 SV=1
Length = 119
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 38 KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV 87
+LW RI AGA HG+ Y F GL + + L+RK L+D+AA EP F+V
Sbjct: 59 RLWIQRINAGARLHGMNYSTFINGLKVAGVDLNRKVLADIAAREPEAFQV 108
>sp|A1WU56|RL20_HALHL 50S ribosomal protein L20 OS=Halorhodospira halophila (strain DSM
244 / SL1) GN=rplT PE=3 SV=1
Length = 119
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW RI A A +HG+ Y GL ++ I +DRK L+DLA EP++F
Sbjct: 60 LWIQRINAAARQHGLSYSRLMNGLQQAGIEVDRKQLADLAVHEPQSF 106
>sp|C4XL14|RL20_DESMR 50S ribosomal protein L20 OS=Desulfovibrio magneticus (strain ATCC
700980 / DSM 13731 / RS-1) GN=rplT PE=3 SV=1
Length = 117
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 38 KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
KLW RI A A E+G+ Y +F GLT + + LDRK L+D+A E +F+
Sbjct: 58 KLWILRINAAARENGLSYSVFMHGLTVAGVELDRKVLADMAVREKDSFQ 106
>sp|Q1LP77|RL20_RALME 50S ribosomal protein L20 OS=Ralstonia metallidurans (strain CH34 /
ATCC 43123 / DSM 2839) GN=rplT PE=3 SV=1
Length = 118
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVKKSTVGTTMC 97
LW ARI A EHG+ Y +F GL +++I LDRK LSD+A + F + V T+
Sbjct: 60 LWIARINAATREHGMTYSVFMNGLKKASIELDRKVLSDMAIHDKPAFAAIVNQVKATVA 118
>sp|B3R4J4|RL20_CUPTR 50S ribosomal protein L20 OS=Cupriavidus taiwanensis (strain R1 /
LMG 19424) GN=rplT PE=3 SV=1
Length = 118
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVKKSTVGTTMC 97
LW ARI A EHG+ Y +F GL +++I LDRK LSD+A + F + V T+
Sbjct: 60 LWIARINAATREHGMTYSVFMNGLKKASIELDRKVLSDMAIHDKPAFAAIVNQVKATVA 118
>sp|Q472N5|RL20_CUPPJ 50S ribosomal protein L20 OS=Cupriavidus pinatubonensis (strain
JMP134 / LMG 1197) GN=rplT PE=3 SV=1
Length = 118
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVKKSTVGTTMC 97
LW ARI A EHG+ Y +F GL +++I LDRK LSD+A + F + V T+
Sbjct: 60 LWIARINAATREHGMTYSVFMNGLKKASIELDRKVLSDMAIHDKPAFAAIVNQVKATVA 118
>sp|Q0KBZ0|RL20_CUPNH 50S ribosomal protein L20 OS=Cupriavidus necator (strain ATCC 17699
/ H16 / DSM 428 / Stanier 337) GN=rplT PE=3 SV=1
Length = 118
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVKKSTVGTTMC 97
LW ARI A EHG+ Y +F GL +++I LDRK LSD+A + F + V T+
Sbjct: 60 LWIARINAATREHGMTYSVFMNGLKKASIELDRKVLSDMAIHDKPAFAAIVNQVKATVA 118
>sp|A8HWM3|RL20_AZOC5 50S ribosomal protein L20 OS=Azorhizobium caulinodans (strain ATCC
43989 / DSM 5975 / ORS 571) GN=rplT PE=3 SV=1
Length = 119
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
LW RI AG E G+ Y F +GL ++ I +DRK LSD+A EP T K
Sbjct: 60 LWIQRINAGVRELGMTYGRFIDGLGKAGIEVDRKVLSDIAVHEPETLK 107
>sp|B9KZB5|RL20_THERP 50S ribosomal protein L20 OS=Thermomicrobium roseum (strain ATCC
27502 / DSM 5159 / P-2) GN=rplT PE=3 SV=1
Length = 117
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW RI A A +HG+PY F GL ++ + +DRK L+DLA +P F
Sbjct: 60 LWIIRINAAARQHGMPYRDFIHGLKQAGVEVDRKMLADLAVHDPSAF 106
>sp|A6SY33|RL20_JANMA 50S ribosomal protein L20 OS=Janthinobacterium sp. (strain
Marseille) GN=rplT PE=3 SV=1
Length = 119
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW RI A + EHG+ Y +F GL R++I LDRK L+D+A + F
Sbjct: 60 LWITRINAASREHGLTYSVFMNGLKRASIELDRKVLADMAVMDKPAF 106
>sp|A5US40|RL20_ROSS1 50S ribosomal protein L20 OS=Roseiflexus sp. (strain RS-1) GN=rplT
PE=3 SV=1
Length = 117
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW RI A A HG+ Y F GL R+ I LDRK L+D+A +P F
Sbjct: 60 LWIVRINAAARMHGMSYSRFMNGLKRAGIDLDRKILADMAVRDPAAF 106
>sp|Q9K093|RL20_NEIMB 50S ribosomal protein L20 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rplT PE=3 SV=1
Length = 119
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW RI AG E+G+ Y F GL R++I +DRK L+DLA ++ F
Sbjct: 60 LWIVRINAGTRENGLSYSKFMNGLKRASIEIDRKVLADLAVFDKAAF 106
>sp|B8IP77|RL20_METNO 50S ribosomal protein L20 OS=Methylobacterium nodulans (strain
ORS2060 / LMG 21967) GN=rplT PE=3 SV=1
Length = 125
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW R+ A EHG+ Y F +GL ++ I++DRK LS+LA EP F
Sbjct: 60 LWIQRLNAAVREHGLTYSRFIDGLAKAGIVVDRKALSELAIHEPAAF 106
>sp|Q4A5F6|RL20_MYCS5 50S ribosomal protein L20 OS=Mycoplasma synoviae (strain 53)
GN=rplT PE=3 SV=1
Length = 116
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 38 KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
KLW ARI A HG+ Y F GL ++ ++++RK LS+LA +P+TF
Sbjct: 59 KLWIARINAAVRPHGLSYSQFINGLKKAEVLINRKMLSELAINQPQTF 106
>sp|C1DDA3|RL20_LARHH 50S ribosomal protein L20 OS=Laribacter hongkongensis (strain
HLHK9) GN=rplT PE=3 SV=1
Length = 119
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW ARI A A E G+ Y F GL +++I +DRK L+DLA +E F
Sbjct: 60 LWIARINAAARECGLSYSKFMNGLKKASIEIDRKVLADLAVFEKAVF 106
>sp|B2KB85|RL20_ELUMP 50S ribosomal protein L20 OS=Elusimicrobium minutum (strain Pei191)
GN=rplT PE=3 SV=1
Length = 118
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 38 KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
+LW RI A E G+ Y F GL +SNI L+RK LS++A +P +FK
Sbjct: 58 QLWITRINAAVREEGLNYSNFINGLAKSNITLNRKMLSEMAIQDPLSFK 106
>sp|B9J7G2|RL20_AGRRK 50S ribosomal protein L20 OS=Agrobacterium radiobacter (strain K84
/ ATCC BAA-868) GN=rplT PE=3 SV=1
Length = 134
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW RI A EHG+ Y F +GLT++ I +DRK LSD+A E F
Sbjct: 60 LWIQRINAAVREHGLTYGRFIDGLTKAGIEVDRKVLSDMAIHETEAF 106
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,786,769
Number of Sequences: 539616
Number of extensions: 2351564
Number of successful extensions: 5303
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4459
Number of HSP's gapped (non-prelim): 853
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)