Your job contains 1 sequence.
>psy12837
MNSVRFHITTFHGKYYTPVWKTSKVCNEEINLTGHIGKLWTARITAGAEEHGVPYPLFRE
GLTRSNIMLDRKTLSDLAAWEPRTFKVKKSTVGTTMCRIYQFYTKPSYHSCESQVQALDL
YSMKVKFHPLTGTQTCAPLFTRQTLSLTQIAAAKVIDDEVVGSRHLEQPKYFFRRDLLKK
FWNH
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy12837
(184 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0036335 - symbol:mRpL20 "mitochondrial ribosomal p... 154 3.5e-11 1
UNIPROTKB|Q2TBR2 - symbol:MRPL20 "39S ribosomal protein L... 142 6.6e-10 1
UNIPROTKB|E2QZ57 - symbol:MRPL20 "Uncharacterized protein... 136 2.9e-09 1
UNIPROTKB|F1RJD0 - symbol:MRPL20 "Uncharacterized protein... 135 3.6e-09 1
MGI|MGI:2137221 - symbol:Mrpl20 "mitochondrial ribosomal ... 133 5.9e-09 1
RGD|1588219 - symbol:Mrpl20 "mitochondrial ribosomal prot... 133 5.9e-09 1
UNIPROTKB|Q9BYC9 - symbol:MRPL20 "39S ribosomal protein L... 131 9.7e-09 1
TAIR|locus:2015661 - symbol:AT1G16740 species:3702 "Arabi... 126 3.3e-08 1
DICTYBASE|DDB_G0273771 - symbol:DDB_G0273771 "50S ribosom... 122 8.7e-08 1
DICTYBASE|DDB_G0273295 - symbol:DDB_G0273295 "39S ribosom... 122 8.7e-08 1
UNIPROTKB|E1BRV2 - symbol:MRPL20 "Uncharacterized protein... 119 1.8e-07 1
TIGR_CMR|CPS_2906 - symbol:CPS_2906 "ribosomal protein L2... 112 1.0e-06 1
UNIPROTKB|P0A479 - symbol:rplT "50S ribosomal protein L20... 111 1.3e-06 1
TIGR_CMR|VC_A0290 - symbol:VC_A0290 "ribosomal protein L2... 111 1.3e-06 1
ZFIN|ZDB-GENE-030131-5299 - symbol:mrpl20 "mitochondrial ... 111 1.3e-06 1
UNIPROTKB|P0A7L3 - symbol:rplT "50S ribosomal subunit pro... 107 3.9e-06 1
TIGR_CMR|CBU_1323 - symbol:CBU_1323 "ribosomal protein L2... 107 3.9e-06 1
TIGR_CMR|SO_2302 - symbol:SO_2302 "ribosomal protein L20"... 106 5.2e-06 1
UNIPROTKB|P66105 - symbol:rplT "50S ribosomal protein L20... 99 3.5e-05 1
TIGR_CMR|CHY_1576 - symbol:CHY_1576 "ribosomal protein L2... 98 4.7e-05 1
TIGR_CMR|ECH_0197 - symbol:ECH_0197 "ribosomal protein L2... 97 6.1e-05 1
TIGR_CMR|GSU_1518 - symbol:GSU_1518 "ribosomal protein L2... 94 0.00014 1
TIGR_CMR|BA_4817 - symbol:BA_4817 "ribosomal protein L20"... 93 0.00018 1
TIGR_CMR|SPO_3598 - symbol:SPO_3598 "ribosomal protein L2... 93 0.00018 1
TIGR_CMR|NSE_0215 - symbol:NSE_0215 "ribosomal protein L2... 92 0.00023 1
>FB|FBgn0036335 [details] [associations]
symbol:mRpL20 "mitochondrial ribosomal protein L20"
species:7227 "Drosophila melanogaster" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0005762 "mitochondrial large ribosomal subunit"
evidence=ISS] [GO:0019843 "rRNA binding" evidence=IEA]
InterPro:IPR005813 Pfam:PF00453 PRINTS:PR00062 EMBL:AE014296
GO:GO:0006412 GO:GO:0005762 GO:GO:0003735 GO:GO:0019843
PANTHER:PTHR10986 TIGRFAMs:TIGR01032 eggNOG:COG0292 CTD:55052
GeneTree:ENSGT00390000015823 OMA:MRTLWIS HSSP:O67086 EMBL:BT089020
RefSeq:NP_524051.1 UniGene:Dm.2752 SMR:Q9VU36 STRING:Q9VU36
EnsemblMetazoa:FBtr0075897 GeneID:39477 KEGG:dme:Dmel_CG11258
UCSC:CG11258-RA FlyBase:FBgn0036335 InParanoid:Q9VU36
OrthoDB:EOG4FXPQW GenomeRNAi:39477 NextBio:813845 Uniprot:Q9VU36
Length = 150
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 26/51 (50%), Positives = 40/51 (78%)
Query: 36 IGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
+ +LW+ R+ AG +++GV F+EGL RS+I+L++K LSDLA WEPR+F+
Sbjct: 64 MAQLWSTRVEAGCQQYGVGLETFKEGLARSDILLNKKVLSDLAIWEPRSFE 114
>UNIPROTKB|Q2TBR2 [details] [associations]
symbol:MRPL20 "39S ribosomal protein L20, mitochondrial"
species:9913 "Bos taurus" [GO:0005761 "mitochondrial ribosome"
evidence=ISS] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR005813 Pfam:PF00453
PRINTS:PR00062 PROSITE:PS00937 GO:GO:0006412 GO:GO:0003735
GO:GO:0019843 GO:GO:0005761 PANTHER:PTHR10986 TIGRFAMs:TIGR01032
HOGENOM:HOG000035046 eggNOG:COG0292 PDB:2FTC PDBsum:2FTC
EMBL:BC109775 IPI:IPI00692693 RefSeq:NP_001033595.1
UniGene:Bt.52937 ProteinModelPortal:Q2TBR2 STRING:Q2TBR2
PRIDE:Q2TBR2 Ensembl:ENSBTAT00000006406 GeneID:506358
KEGG:bta:506358 CTD:55052 GeneTree:ENSGT00390000015823
HOVERGEN:HBG058971 InParanoid:Q2TBR2 OMA:MRTLWIS OrthoDB:EOG4ZS94J
EvolutionaryTrace:Q2TBR2 NextBio:20867575 Uniprot:Q2TBR2
Length = 149
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 35 HIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
H+ LW RITA ++EHG+ YP F L + + L+RK L+DLA +EP+TFK
Sbjct: 63 HLRTLWINRITAASQEHGLKYPAFILNLIKCQVELNRKVLADLAIYEPKTFK 114
>UNIPROTKB|E2QZ57 [details] [associations]
symbol:MRPL20 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005761 "mitochondrial ribosome"
evidence=IEA] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR005813 Pfam:PF00453
PRINTS:PR00062 GO:GO:0006412 GO:GO:0003735 GO:GO:0019843
GO:GO:0005761 PANTHER:PTHR10986 TIGRFAMs:TIGR01032 CTD:55052
GeneTree:ENSGT00390000015823 OMA:MRTLWIS EMBL:AAEX03003846
RefSeq:XP_536709.1 Ensembl:ENSCAFT00000030578 GeneID:479569
KEGG:cfa:479569 NextBio:20854737 Uniprot:E2QZ57
Length = 149
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 25/48 (52%), Positives = 34/48 (70%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
LW RITA ++EHG+ YP F L + + L+RK L+DLA +EP+TFK
Sbjct: 67 LWINRITAASQEHGLKYPAFIVNLIKCQVELNRKVLADLAIYEPKTFK 114
>UNIPROTKB|F1RJD0 [details] [associations]
symbol:MRPL20 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005761 "mitochondrial ribosome" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR005813 Pfam:PF00453 PRINTS:PR00062
HAMAP:MF_00382 GO:GO:0006412 GO:GO:0003735 GO:GO:0019843
GO:GO:0005761 PANTHER:PTHR10986 TIGRFAMs:TIGR01032 OMA:GRRKNVW
GeneTree:ENSGT00390000015823 EMBL:FP102593 RefSeq:XP_003127555.3
Ensembl:ENSSSCT00000003716 GeneID:100511022 KEGG:ssc:100511022
Uniprot:F1RJD0
Length = 149
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 25/48 (52%), Positives = 34/48 (70%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
LW RITA ++EHG+ YP F L + + L+RK L+DLA +EP+TFK
Sbjct: 67 LWINRITAASQEHGLKYPAFIINLIKCQVELNRKVLADLAIYEPKTFK 114
>MGI|MGI:2137221 [details] [associations]
symbol:Mrpl20 "mitochondrial ribosomal protein L20"
species:10090 "Mus musculus" [GO:0003735 "structural constituent of
ribosome" evidence=ISO] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0005761
"mitochondrial ribosome" evidence=ISO] [GO:0005762 "mitochondrial
large ribosomal subunit" evidence=ISO] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=ISO] [GO:0019843
"rRNA binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] InterPro:IPR005813 Pfam:PF00453
PRINTS:PR00062 PROSITE:PS00937 MGI:MGI:2137221 GO:GO:0006412
GO:GO:0003735 GO:GO:0019843 GO:GO:0005761 PANTHER:PTHR10986
TIGRFAMs:TIGR01032 HOGENOM:HOG000035046 eggNOG:COG0292 OMA:GRRKNVW
CTD:55052 GeneTree:ENSGT00390000015823 HOVERGEN:HBG058971
OrthoDB:EOG4ZS94J HSSP:O67086 EMBL:AB049645 EMBL:AK004053
EMBL:AK011341 EMBL:AK015199 EMBL:AK168665 EMBL:BC039985
IPI:IPI00471157 RefSeq:NP_079846.1 UniGene:Mm.23825
ProteinModelPortal:Q9CQL4 SMR:Q9CQL4 STRING:Q9CQL4
PhosphoSite:Q9CQL4 PaxDb:Q9CQL4 PRIDE:Q9CQL4
Ensembl:ENSMUST00000030942 GeneID:66448 KEGG:mmu:66448
InParanoid:Q9CQL4 NextBio:321725 Bgee:Q9CQL4 CleanEx:MM_MRPL20
Genevestigator:Q9CQL4 GermOnline:ENSMUSG00000029066 Uniprot:Q9CQL4
Length = 149
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
LW RITA ++EHG+ YP F L + + L+RK L DLA +EP+TFK
Sbjct: 67 LWINRITAASQEHGLKYPAFIVNLIKCQVELNRKVLVDLAIYEPKTFK 114
>RGD|1588219 [details] [associations]
symbol:Mrpl20 "mitochondrial ribosomal protein L20"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0005761 "mitochondrial ribosome"
evidence=IEA;ISO] [GO:0006412 "translation" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] InterPro:IPR005813
Pfam:PF00453 PRINTS:PR00062 RGD:1588219 GO:GO:0006412 GO:GO:0003735
GO:GO:0019843 GO:GO:0005761 EMBL:CH473968 PANTHER:PTHR10986
TIGRFAMs:TIGR01032 HOGENOM:HOG000035046 eggNOG:COG0292 CTD:55052
GeneTree:ENSGT00390000015823 HOVERGEN:HBG058971 OMA:MRTLWIS
OrthoDB:EOG4ZS94J EMBL:BC166541 IPI:IPI00763487
RefSeq:NP_001102898.1 UniGene:Rn.2913 STRING:B2GV62
Ensembl:ENSRNOT00000025213 GeneID:680747 KEGG:rno:680747
NextBio:719420 Genevestigator:B2GV62 Uniprot:B2GV62
Length = 149
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
LW RITA ++EHG+ YP F L + + L+RK L DLA +EP+TFK
Sbjct: 67 LWINRITAASQEHGLQYPAFILNLVKCQVELNRKVLVDLAIYEPKTFK 114
>UNIPROTKB|Q9BYC9 [details] [associations]
symbol:MRPL20 "39S ribosomal protein L20, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005761 "mitochondrial ribosome"
evidence=IDA] InterPro:IPR005813 Pfam:PF00453 PRINTS:PR00062
PROSITE:PS00937 EMBL:AB049644 GO:GO:0006412 EMBL:CH471183
GO:GO:0003735 GO:GO:0019843 EMBL:AL391244 GO:GO:0005761
PANTHER:PTHR10986 TIGRFAMs:TIGR01032 HOGENOM:HOG000035046
eggNOG:COG0292 OMA:GRRKNVW CTD:55052 HOVERGEN:HBG058971
OrthoDB:EOG4ZS94J EMBL:AK315794 EMBL:BC009515 EMBL:BC014316
EMBL:BC059945 IPI:IPI00013706 RefSeq:NP_060441.2 UniGene:Hs.182698
HSSP:O67086 ProteinModelPortal:Q9BYC9 SMR:Q9BYC9 IntAct:Q9BYC9
MINT:MINT-1419302 STRING:Q9BYC9 PhosphoSite:Q9BYC9 DMDM:74752447
PaxDb:Q9BYC9 PeptideAtlas:Q9BYC9 PRIDE:Q9BYC9
Ensembl:ENST00000344843 GeneID:55052 KEGG:hsa:55052 UCSC:uc001afo.4
GeneCards:GC01M001329 H-InvDB:HIX0000027 HGNC:HGNC:14478
HPA:HPA047074 MIM:611833 neXtProt:NX_Q9BYC9 PharmGKB:PA30950
InParanoid:Q9BYC9 PhylomeDB:Q9BYC9 GenomeRNAi:55052 NextBio:58521
Bgee:Q9BYC9 CleanEx:HS_MRPL20 Genevestigator:Q9BYC9
GermOnline:ENSG00000131586 Uniprot:Q9BYC9
Length = 149
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 24/48 (50%), Positives = 33/48 (68%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
LW RITA ++EHG+ YP L + + L+RK L+DLA +EP+TFK
Sbjct: 67 LWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFK 114
>TAIR|locus:2015661 [details] [associations]
symbol:AT1G16740 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=ISS]
InterPro:IPR005813 Pfam:PF00453 PRINTS:PR00062 HAMAP:MF_00382
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 PANTHER:PTHR10986 TIGRFAMs:TIGR01032
HOGENOM:HOG000035046 eggNOG:COG0292 OMA:MRTLWIS HSSP:O67086
UniGene:At.16104 EMBL:AY086501 EMBL:BT024573 IPI:IPI00540437
RefSeq:NP_173118.1 ProteinModelPortal:Q8LCN1 SMR:Q8LCN1
STRING:Q8LCN1 PaxDb:Q8LCN1 PRIDE:Q8LCN1 DNASU:838245
EnsemblPlants:AT1G16740.1 GeneID:838245 KEGG:ath:AT1G16740
TAIR:At1g16740 InParanoid:Q8LCN1 PhylomeDB:Q8LCN1
ProtClustDB:CLSN2679823 Genevestigator:Q8LCN1 Uniprot:Q8LCN1
Length = 126
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 25/48 (52%), Positives = 32/48 (66%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
LW RI AG+ +HGV Y F GL + NI L+RK LS+L+ EP +FK
Sbjct: 49 LWIERINAGSRQHGVNYGNFIHGLMKENIQLNRKVLSELSMHEPYSFK 96
>DICTYBASE|DDB_G0273771 [details] [associations]
symbol:DDB_G0273771 "50S ribosomal protein L20"
species:44689 "Dictyostelium discoideum" [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR005813 Pfam:PF00453
PRINTS:PR00062 dictyBase:DDB_G0273771 dictyBase:DDB_G0273295
HAMAP:MF_00382 GO:GO:0006412 GO:GO:0005840 EMBL:AAFI02000011
EMBL:AAFI02000009 GO:GO:0003735 GO:GO:0019843 PANTHER:PTHR10986
TIGRFAMs:TIGR01032 eggNOG:COG0292 OMA:MRTLWIS RefSeq:XP_644502.1
RefSeq:XP_644748.1 ProteinModelPortal:Q556W7 STRING:Q556W7
EnsemblProtists:DDB0203044 EnsemblProtists:DDB0217299
GeneID:8618848 GeneID:8619128 KEGG:ddi:DDB_G0273295
KEGG:ddi:DDB_G0273771 InParanoid:Q556W7 ProtClustDB:PTZ00030
Uniprot:Q556W7
Length = 122
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 28/67 (41%), Positives = 39/67 (58%)
Query: 38 KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV----KKSTVG 93
K+W RI AGA +H + Y F+ GL S + ++RK LS+LA EP +FKV K+TV
Sbjct: 48 KMWIERINAGARQHEMTYSDFQRGLIASGVEINRKILSELAVSEPFSFKVLVDHSKNTVS 107
Query: 94 TTMCRIY 100
+ Y
Sbjct: 108 NLHPKSY 114
>DICTYBASE|DDB_G0273295 [details] [associations]
symbol:DDB_G0273295 "39S ribosomal protein L20,
mitochondrial" species:44689 "Dictyostelium discoideum" [GO:0019843
"rRNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR005813 Pfam:PF00453 PRINTS:PR00062
dictyBase:DDB_G0273771 dictyBase:DDB_G0273295 HAMAP:MF_00382
GO:GO:0006412 GO:GO:0005840 EMBL:AAFI02000011 EMBL:AAFI02000009
GO:GO:0003735 GO:GO:0019843 PANTHER:PTHR10986 TIGRFAMs:TIGR01032
eggNOG:COG0292 OMA:MRTLWIS RefSeq:XP_644502.1 RefSeq:XP_644748.1
ProteinModelPortal:Q556W7 STRING:Q556W7 EnsemblProtists:DDB0203044
EnsemblProtists:DDB0217299 GeneID:8618848 GeneID:8619128
KEGG:ddi:DDB_G0273295 KEGG:ddi:DDB_G0273771 InParanoid:Q556W7
ProtClustDB:PTZ00030 Uniprot:Q556W7
Length = 122
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 28/67 (41%), Positives = 39/67 (58%)
Query: 38 KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV----KKSTVG 93
K+W RI AGA +H + Y F+ GL S + ++RK LS+LA EP +FKV K+TV
Sbjct: 48 KMWIERINAGARQHEMTYSDFQRGLIASGVEINRKILSELAVSEPFSFKVLVDHSKNTVS 107
Query: 94 TTMCRIY 100
+ Y
Sbjct: 108 NLHPKSY 114
>UNIPROTKB|E1BRV2 [details] [associations]
symbol:MRPL20 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0019843
"rRNA binding" evidence=IEA] [GO:0005761 "mitochondrial ribosome"
evidence=IEA] InterPro:IPR005813 Pfam:PF00453 PRINTS:PR00062
HAMAP:MF_00382 GO:GO:0006412 GO:GO:0003735 GO:GO:0019843
GO:GO:0005761 PANTHER:PTHR10986 TIGRFAMs:TIGR01032 CTD:55052
GeneTree:ENSGT00390000015823 OMA:MRTLWIS EMBL:AADN02040864
IPI:IPI00573274 RefSeq:XP_001234297.1 UniGene:Gga.1933
Ensembl:ENSGALT00000002342 GeneID:770979 KEGG:gga:770979
NextBio:20921185 Uniprot:E1BRV2
Length = 149
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
LW RI A + EHG+ Y F L ++ + L+RK ++DLA +EP+TFK
Sbjct: 67 LWITRIEAASLEHGLKYSAFISNLFKTQVELNRKMIADLAIYEPKTFK 114
>TIGR_CMR|CPS_2906 [details] [associations]
symbol:CPS_2906 "ribosomal protein L20" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0015934 "large ribosomal subunit"
evidence=ISS] [GO:0042254 "ribosome biogenesis" evidence=ISS]
InterPro:IPR005813 Pfam:PF00453 PRINTS:PR00062 PROSITE:PS00937
HAMAP:MF_00382 GO:GO:0006412 GO:GO:0005840 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003735 GO:GO:0019843
PANTHER:PTHR10986 TIGRFAMs:TIGR01032 HOGENOM:HOG000035046
eggNOG:COG0292 KO:K02887 OMA:GRRKNVW ProtClustDB:PRK05185
RefSeq:YP_269607.1 ProteinModelPortal:Q480B2 SMR:Q480B2
STRING:Q480B2 GeneID:3520510 KEGG:cps:CPS_2906 PATRIC:21468837
BioCyc:CPSY167879:GI48-2956-MONOMER Uniprot:Q480B2
Length = 119
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 23/55 (41%), Positives = 37/55 (67%)
Query: 38 KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPR--TFKVKKS 90
+LW ARI A A ++G+ Y F GL +++I +DRK L+D+A ++ TF V+K+
Sbjct: 59 QLWIARINAAARQNGLSYSKFINGLKKASIEIDRKILADIAVYDKAAFTFLVEKA 113
>UNIPROTKB|P0A479 [details] [associations]
symbol:rplT "50S ribosomal protein L20" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR005813 Pfam:PF00453
PRINTS:PR00062 PROSITE:PS00937 HAMAP:MF_00382 GO:GO:0006412
GO:GO:0005840 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0003735
GO:GO:0019843 PANTHER:PTHR10986 TIGRFAMs:TIGR01032 eggNOG:COG0292
KO:K02887 OMA:GRRKNVW ProtClustDB:PRK05185 EMBL:AF055586
EMBL:AF179591 PIR:B82476 RefSeq:NP_232686.1
ProteinModelPortal:P0A479 SMR:P0A479 PRIDE:P0A479 DNASU:2611990
GeneID:2611990 KEGG:vch:VCA0290 PATRIC:20085147 Uniprot:P0A479
Length = 117
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 38 KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV 87
+LW ARI A A ++G+ Y F GL +++I +DRK L+D+A ++ F V
Sbjct: 59 QLWIARINAAARQNGLSYSRFINGLKKASIEIDRKILADIAVFDKAAFAV 108
>TIGR_CMR|VC_A0290 [details] [associations]
symbol:VC_A0290 "ribosomal protein L20" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR005813 Pfam:PF00453 PRINTS:PR00062
PROSITE:PS00937 HAMAP:MF_00382 GO:GO:0006412 GO:GO:0005840
EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0003735 GO:GO:0019843
PANTHER:PTHR10986 TIGRFAMs:TIGR01032 eggNOG:COG0292 KO:K02887
OMA:GRRKNVW ProtClustDB:PRK05185 EMBL:AF055586 EMBL:AF179591
PIR:B82476 RefSeq:NP_232686.1 ProteinModelPortal:P0A479 SMR:P0A479
PRIDE:P0A479 DNASU:2611990 GeneID:2611990 KEGG:vch:VCA0290
PATRIC:20085147 Uniprot:P0A479
Length = 117
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 38 KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKV 87
+LW ARI A A ++G+ Y F GL +++I +DRK L+D+A ++ F V
Sbjct: 59 QLWIARINAAARQNGLSYSRFINGLKKASIEIDRKILADIAVFDKAAFAV 108
>ZFIN|ZDB-GENE-030131-5299 [details] [associations]
symbol:mrpl20 "mitochondrial ribosomal protein
L20" species:7955 "Danio rerio" [GO:0005622 "intracellular"
evidence=IEA] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR005813 Pfam:PF00453 PRINTS:PR00062
ZFIN:ZDB-GENE-030131-5299 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 PANTHER:PTHR10986 TIGRFAMs:TIGR01032
HOGENOM:HOG000035046 CTD:55052 HOVERGEN:HBG058971 EMBL:BC122232
IPI:IPI00786560 RefSeq:NP_001038824.1 UniGene:Dr.75947
ProteinModelPortal:Q0P478 GeneID:751640 KEGG:dre:751640
NextBio:20917792 ArrayExpress:Q0P478 Uniprot:Q0P478
Length = 149
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 38 KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
+LW RI A EHG+ YP L + +++L+R+ L DL+ EPR+F
Sbjct: 66 QLWITRIAAATREHGLKYPALVHQLLKCSVLLNRRMLCDLSITEPRSF 113
>UNIPROTKB|P0A7L3 [details] [associations]
symbol:rplT "50S ribosomal subunit protein L20"
species:83333 "Escherichia coli K-12" [GO:0022625 "cytosolic large
ribosomal subunit" evidence=IMP] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000027
"ribosomal large subunit assembly" evidence=IDA] [GO:0006412
"translation" evidence=IEA] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=IDA] [GO:0003735
"structural constituent of ribosome" evidence=IEA;IDA]
InterPro:IPR005813 Pfam:PF00453 PRINTS:PR00062 PROSITE:PS00937
HAMAP:MF_00382 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0003735 GO:GO:0019843
GO:GO:0000900 GO:GO:0000027 PDB:2VHM PDBsum:2VHM PDB:2RDO
PDBsum:2RDO GO:GO:0022625 EMBL:V00291 EMBL:K02844 PANTHER:PTHR10986
TIGRFAMs:TIGR01032 HOGENOM:HOG000035046 eggNOG:COG0292 KO:K02887
PDB:3J0T PDB:3J0W PDB:3J0Y PDB:3J11 PDB:3J12 PDB:3J14 PDB:3SGF
PDB:3UOS PDBsum:3J0T PDBsum:3J0W PDBsum:3J0Y PDBsum:3J11
PDBsum:3J12 PDBsum:3J14 PDBsum:3SGF PDBsum:3UOS PDB:1P85 PDB:1P86
PDB:1VS6 PDB:1VS8 PDB:1VT2 PDB:2AW4 PDB:2AWB PDB:2GYA PDB:2GYC
PDB:2I2T PDB:2I2V PDB:2J28 PDB:2QAM PDB:2QAO PDB:2QBA PDB:2QBC
PDB:2QBE PDB:2QBG PDB:2QBI PDB:2QBK PDB:2QOV PDB:2QOX PDB:2QOZ
PDB:2QP1 PDB:2VHN PDB:2WWQ PDB:2Z4L PDB:2Z4N PDB:3DF2 PDB:3DF4
PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N PDB:3I1P PDB:3I1R PDB:3I1T
PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU PDB:3J01 PDB:3J19 PDB:3KCR
PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD PDB:3OFQ PDB:3OFR PDB:3OFZ
PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T PDB:4GAR PDB:4GAU PDBsum:1P85
PDBsum:1P86 PDBsum:1VS6 PDBsum:1VS8 PDBsum:1VT2 PDBsum:2AW4
PDBsum:2AWB PDBsum:2GYA PDBsum:2GYC PDBsum:2I2T PDBsum:2I2V
PDBsum:2J28 PDBsum:2QAM PDBsum:2QAO PDBsum:2QBA PDBsum:2QBC
PDBsum:2QBE PDBsum:2QBG PDBsum:2QBI PDBsum:2QBK PDBsum:2QOV
PDBsum:2QOX PDBsum:2QOZ PDBsum:2QP1 PDBsum:2VHN PDBsum:2WWQ
PDBsum:2Z4L PDBsum:2Z4N PDBsum:3DF2 PDBsum:3DF4 PDBsum:3E1B
PDBsum:3E1D PDBsum:3FIK PDBsum:3I1N PDBsum:3I1P PDBsum:3I1R
PDBsum:3I1T PDBsum:3I20 PDBsum:3I22 PDBsum:3IZT PDBsum:3IZU
PDBsum:3J01 PDBsum:3J19 PDBsum:3KCR PDBsum:3OAS PDBsum:3OAT
PDBsum:3OFC PDBsum:3OFD PDBsum:3OFQ PDBsum:3OFR PDBsum:3OFZ
PDBsum:3OG0 PDBsum:3ORB PDBsum:3R8S PDBsum:3R8T PDBsum:4GAR
PDBsum:4GAU PDB:3BBX PDBsum:3BBX OMA:GRRKNVW ProtClustDB:PRK05185
EMBL:M10423 PIR:D64930 RefSeq:NP_416231.1 RefSeq:YP_489978.1
ProteinModelPortal:P0A7L3 SMR:P0A7L3 DIP:DIP-47941N IntAct:P0A7L3
MINT:MINT-1321645 PaxDb:P0A7L3 PRIDE:P0A7L3
EnsemblBacteria:EBESCT00000000901 EnsemblBacteria:EBESCT00000004116
EnsemblBacteria:EBESCT00000004117 EnsemblBacteria:EBESCT00000004118
EnsemblBacteria:EBESCT00000004120 EnsemblBacteria:EBESCT00000016309
GeneID:12931309 GeneID:945152 KEGG:ecj:Y75_p1691 KEGG:eco:b1716
PATRIC:32118736 EchoBASE:EB0874 EcoGene:EG10881
BioCyc:EcoCyc:EG10881-MONOMER BioCyc:ECOL316407:JW1706-MONOMER
EvolutionaryTrace:P0A7L3 Genevestigator:P0A7L3 Uniprot:P0A7L3
Length = 118
Score = 107 (42.7 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 38 KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
+LW ARI A A ++G+ Y F GL ++++ +DRK L+D+A ++ F
Sbjct: 59 QLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAF 106
>TIGR_CMR|CBU_1323 [details] [associations]
symbol:CBU_1323 "ribosomal protein L20" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR005813 Pfam:PF00453
PRINTS:PR00062 PROSITE:PS00937 HAMAP:MF_00382 GO:GO:0006412
GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
GO:GO:0019843 PANTHER:PTHR10986 TIGRFAMs:TIGR01032
HOGENOM:HOG000035046 eggNOG:COG0292 KO:K02887 OMA:GRRKNVW
ProtClustDB:PRK05185 RefSeq:NP_820313.1 ProteinModelPortal:Q83C13
SMR:Q83C13 GeneID:1209229 KEGG:cbu:CBU_1323 PATRIC:17931381
BioCyc:CBUR227377:GJ7S-1313-MONOMER Uniprot:Q83C13
Length = 119
Score = 107 (42.7 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW RI A A EHG+ Y GL ++++ +DRK L++LA ++ F
Sbjct: 60 LWIVRINAAAREHGLSYSRLINGLMKASVAIDRKNLAELAVYDKAAF 106
>TIGR_CMR|SO_2302 [details] [associations]
symbol:SO_2302 "ribosomal protein L20" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR005813 Pfam:PF00453 PRINTS:PR00062 PROSITE:PS00937
HAMAP:MF_00382 GO:GO:0006412 GO:GO:0005840 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003735 GO:GO:0019843
PANTHER:PTHR10986 TIGRFAMs:TIGR01032 HOGENOM:HOG000035046
eggNOG:COG0292 KO:K02887 OMA:GRRKNVW ProtClustDB:PRK05185
RefSeq:NP_717898.1 ProteinModelPortal:Q8EER6 SMR:Q8EER6
GeneID:1170027 KEGG:son:SO_2302 PATRIC:23524227 Uniprot:Q8EER6
Length = 118
Score = 106 (42.4 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 38 KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
+LW ARI A A ++G+ Y F GL +++I +DRK L+D+A ++ F
Sbjct: 59 QLWIARINAAARQNGLSYSRFINGLKKASIEIDRKILADIAVFDKVVF 106
>UNIPROTKB|P66105 [details] [associations]
symbol:rplT "50S ribosomal protein L20" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR005813 Pfam:PF00453 PRINTS:PR00062
PROSITE:PS00937 HAMAP:MF_00382 GO:GO:0005886 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0006412
EMBL:BX842577 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
PANTHER:PTHR10986 TIGRFAMs:TIGR01032 HOGENOM:HOG000035046
eggNOG:COG0292 KO:K02887 OMA:GRRKNVW ProtClustDB:PRK05185
PIR:F70619 RefSeq:NP_216159.1 RefSeq:NP_336136.1
RefSeq:YP_006515034.1 ProteinModelPortal:P66105 SMR:P66105
PRIDE:P66105 EnsemblBacteria:EBMYCT00000000901
EnsemblBacteria:EBMYCT00000072851 GeneID:13316424 GeneID:885455
GeneID:924365 KEGG:mtc:MT1681 KEGG:mtu:Rv1643 KEGG:mtv:RVBD_1643
PATRIC:18125460 TubercuList:Rv1643 Uniprot:P66105
Length = 129
Score = 99 (39.9 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 34 GHIGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
G KLW ARI A A + + Y +GL + + +DRK L+D+A +P F
Sbjct: 55 GEFRKLWIARINAAARLNDITYNRLIQGLKAAGVEVDRKNLADIAISDPAAF 106
>TIGR_CMR|CHY_1576 [details] [associations]
symbol:CHY_1576 "ribosomal protein L20" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR005813 Pfam:PF00453
PRINTS:PR00062 PROSITE:PS00937 HAMAP:MF_00382 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 PANTHER:PTHR10986 TIGRFAMs:TIGR01032
HOGENOM:HOG000035046 eggNOG:COG0292 KO:K02887 OMA:GRRKNVW
ProtClustDB:PRK05185 RefSeq:YP_360405.1 ProteinModelPortal:Q3ABS9
SMR:Q3ABS9 STRING:Q3ABS9 GeneID:3726239 KEGG:chy:CHY_1576
PATRIC:21276277 BioCyc:CHYD246194:GJCN-1575-MONOMER Uniprot:Q3ABS9
Length = 117
Score = 98 (39.6 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 38 KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
KLW RI A A HG+ Y GL ++ + ++RK L+DLA + F
Sbjct: 59 KLWITRINAAARMHGLTYSRMMNGLKKAGVEINRKMLADLAVNDKNAF 106
>TIGR_CMR|ECH_0197 [details] [associations]
symbol:ECH_0197 "ribosomal protein L20" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0015934 "large ribosomal
subunit" evidence=ISS] InterPro:IPR005813 Pfam:PF00453
PRINTS:PR00062 PROSITE:PS00937 HAMAP:MF_00382 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 PANTHER:PTHR10986 TIGRFAMs:TIGR01032
HOGENOM:HOG000035046 eggNOG:COG0292 KO:K02887 OMA:GRRKNVW
ProtClustDB:PRK05185 RefSeq:YP_507021.1 ProteinModelPortal:Q2GHR2
SMR:Q2GHR2 STRING:Q2GHR2 GeneID:3927150 KEGG:ech:ECH_0197
PATRIC:20575931 BioCyc:ECHA205920:GJNR-197-MONOMER Uniprot:Q2GHR2
Length = 124
Score = 97 (39.2 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
LW RI A +HG+ Y F GL+ +N+ L+RK L+D+A FK
Sbjct: 60 LWIMRINAAVRQHGLLYSDFIHGLSLANVTLNRKVLADMAVNHKDHFK 107
>TIGR_CMR|GSU_1518 [details] [associations]
symbol:GSU_1518 "ribosomal protein L20" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0015934 "large ribosomal subunit"
evidence=ISS] [GO:0042254 "ribosome biogenesis" evidence=ISS]
InterPro:IPR005813 Pfam:PF00453 PRINTS:PR00062 PROSITE:PS00937
HAMAP:MF_00382 GO:GO:0006412 GO:GO:0005840 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0003735 GO:GO:0019843
PANTHER:PTHR10986 TIGRFAMs:TIGR01032 HOGENOM:HOG000035046
eggNOG:COG0292 KO:K02887 OMA:GRRKNVW ProtClustDB:PRK05185
RefSeq:NP_952569.1 ProteinModelPortal:Q74D01 SMR:Q74D01
GeneID:2687711 KEGG:gsu:GSU1518 PATRIC:22025877
BioCyc:GSUL243231:GH27-1501-MONOMER Uniprot:Q74D01
Length = 117
Score = 94 (38.1 bits), Expect = 0.00014, P = 0.00014
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW RI A + +G+ Y GL ++ + +DRK L+DLA +P+ F
Sbjct: 60 LWITRINAASRLNGLSYSKLIHGLKQAQVEIDRKVLADLAVSDPKGF 106
>TIGR_CMR|BA_4817 [details] [associations]
symbol:BA_4817 "ribosomal protein L20" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR005813 Pfam:PF00453 PRINTS:PR00062 PROSITE:PS00937
HAMAP:MF_00382 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 PANTHER:PTHR10986 TIGRFAMs:TIGR01032
HOGENOM:HOG000035046 eggNOG:COG0292 KO:K02887 OMA:GRRKNVW
ProtClustDB:PRK05185 RefSeq:NP_847020.1 RefSeq:YP_021463.1
RefSeq:YP_030716.1 ProteinModelPortal:Q81L17 SMR:Q81L17
DNASU:1083953 EnsemblBacteria:EBBACT00000008961
EnsemblBacteria:EBBACT00000014864 EnsemblBacteria:EBBACT00000023349
GeneID:1083953 GeneID:2815694 GeneID:2851580 KEGG:ban:BA_4817
KEGG:bar:GBAA_4817 KEGG:bat:BAS4469
BioCyc:BANT260799:GJAJ-4526-MONOMER
BioCyc:BANT261594:GJ7F-4679-MONOMER Uniprot:Q81L17
Length = 118
Score = 93 (37.8 bits), Expect = 0.00018, P = 0.00018
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 38 KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
KLW RI A A +G+ Y GL + I ++RK L+DLA + + F
Sbjct: 59 KLWITRINAAARMNGLSYSRLMHGLKNAGIEVNRKMLADLAVHDEKAF 106
>TIGR_CMR|SPO_3598 [details] [associations]
symbol:SPO_3598 "ribosomal protein L20" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0042255 "ribosome assembly"
evidence=ISS] InterPro:IPR005813 Pfam:PF00453 PRINTS:PR00062
PROSITE:PS00937 HAMAP:MF_00382 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 PANTHER:PTHR10986 TIGRFAMs:TIGR01032
HOGENOM:HOG000035046 eggNOG:COG0292 KO:K02887 OMA:GRRKNVW
ProtClustDB:PRK05185 RefSeq:YP_168793.1 ProteinModelPortal:Q5LMG5
SMR:Q5LMG5 GeneID:3196278 KEGG:sil:SPO3598 PATRIC:23380673
Uniprot:Q5LMG5
Length = 121
Score = 93 (37.8 bits), Expect = 0.00018, P = 0.00018
Identities = 21/49 (42%), Positives = 25/49 (51%)
Query: 39 LWTARITAGAEEH--GVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW RI A H + Y F GL + I +DRK L+DLA EP F
Sbjct: 60 LWIQRINAAVRSHDEALTYSRFINGLNLAGIEVDRKVLADLAVHEPEAF 108
>TIGR_CMR|NSE_0215 [details] [associations]
symbol:NSE_0215 "ribosomal protein L20" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0015934 "large ribosomal
subunit" evidence=ISS] InterPro:IPR005813 Pfam:PF00453
PRINTS:PR00062 PROSITE:PS00937 HAMAP:MF_00382 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 EMBL:CP000237
GenomeReviews:CP000237_GR PANTHER:PTHR10986 TIGRFAMs:TIGR01032
HOGENOM:HOG000035046 eggNOG:COG0292 KO:K02887 OMA:GRRKNVW
ProtClustDB:PRK05185 RefSeq:YP_506110.1 ProteinModelPortal:Q2GEI6
SMR:Q2GEI6 STRING:Q2GEI6 GeneID:3931364 KEGG:nse:NSE_0215
PATRIC:22680529 BioCyc:NSEN222891:GHFU-246-MONOMER Uniprot:Q2GEI6
Length = 117
Score = 92 (37.4 bits), Expect = 0.00023, P = 0.00023
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 39 LWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTF 85
LW RI A G+ Y +F +GL + + ++RK LS+LA +P F
Sbjct: 60 LWIQRINAAVRSFGLVYSVFMKGLKAAGVDVNRKVLSELAISQPSAF 106
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.134 0.422 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 184 184 0.00078 110 3 11 22 0.39 32
31 0.40 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 602 (64 KB)
Total size of DFA: 178 KB (2103 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:04
No. of threads or processors used: 24
Search cpu time: 15.62u 0.08s 15.70t Elapsed: 00:00:15
Total cpu time: 15.62u 0.08s 15.70t Elapsed: 00:00:19
Start: Thu Aug 15 12:31:23 2013 End: Thu Aug 15 12:31:42 2013