RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12837
         (184 letters)



>2ftc_L MRPL20 protein; mitochondrial ribosome, large ribosomal subunit,
           ribosomal R ribosome; 12.10A {Bos taurus}
          Length = 118

 Score = 68.0 bits (167), Expect = 2e-15
 Identities = 24/49 (48%), Positives = 33/49 (67%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
            LW  RITA ++EHG+ YP     L +  + L+RK L+DLA +EP+TFK
Sbjct: 59  TLWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFK 107


>2ghj_A 50S ribosomal protein L20; folding intermediate, ribosomal protein
           extension, structural protein; 2.90A {Aquifex aeolicus}
           PDB: 1gyz_A
          Length = 118

 Score = 63.3 bits (155), Expect = 9e-14
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           +LW ARI A    +G+ Y  F  GL ++ I LDRK L+D+A  +P+ F+
Sbjct: 57  RLWIARINAAVRAYGLNYSTFINGLKKAGIELDRKILADMAVRDPQAFE 105


>3r8s_Q 50S ribosomal protein L20; protein biosynthesis, RNA, tRNA,
           transfer RNA, 23S ribosomal subunit, ribosome recycling
           factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
           1p85_O 1p86_O 2awb_Q 2aw4_Q 2i2v_Q 2j28_Q 2i2t_Q*
           2qao_Q* 2qba_Q* 2qbc_Q* 2qbe_Q 2qbg_Q 2qbi_Q* 2qbk_Q*
           2qov_Q 2qox_Q 2qoz_Q* 2qp1_Q* 2rdo_Q 2vhm_Q ...
          Length = 117

 Score = 63.3 bits (155), Expect = 1e-13
 Identities = 19/49 (38%), Positives = 32/49 (65%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           +LW ARI A A ++G+ Y  F  GL ++++ +DRK L+D+A ++   F 
Sbjct: 58  QLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFT 106


>3v2d_U 50S ribosomal protein L20; ribosome associated inhibitor A, RAIA,
           protein Y, stress RES stationary phase, ribosome
           hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
           1vsp_O 2hgj_T 2hgq_T 2hgu_T 1vsa_O 2j03_U 2jl6_U 2jl8_U
           2v47_U 2v49_U 2wdi_U 2wdj_U 2wdl_U 2wdn_U 2wh2_U 2wh4_U
           2wrj_U 2wrl_U 2wro_U 2wrr_U ...
          Length = 118

 Score = 63.3 bits (155), Expect = 1e-13
 Identities = 22/49 (44%), Positives = 30/49 (61%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           +LW  RI A   +HG+ Y  F  GL ++ I +DRK L+DLA  EP+ F 
Sbjct: 59  RLWIVRINAACRQHGLNYSTFIHGLKKAGIEVDRKNLADLAVREPQVFA 107


>2zjr_N 50S ribosomal protein L20; ribosome, large ribosomal subunit,
           ribonucleoprotein, RNA-binding, rRNA-binding,
           tRNA-binding, methylation; 2.91A {Deinococcus
           radiodurans} SCOP: a.144.2.1 PDB: 1nwx_O* 1nwy_O*
           1sm1_O* 1xbp_O* 1yl3_1 2b66_U 2b9n_U 2b9p_U 2zjp_N*
           2zjq_N 1nkw_O 3cf5_N* 3dll_N* 3pio_N* 3pip_N* 1pnu_O
           1pny_O 1vor_R 1vou_R 1vow_R ...
          Length = 118

 Score = 62.9 bits (154), Expect = 1e-13
 Identities = 27/49 (55%), Positives = 33/49 (67%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           +LW  RI AGA  HG+ Y  F  GL R+NI L+RK L+D+AA EP  FK
Sbjct: 59  RLWIQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFK 107


>3bbo_S Ribosomal protein L20; large ribosomal subunit, spinach chloroplast
           ribosome, ribonucleoprotein particle, macromolecular
           complex; 9.40A {Spinacea oleracea}
          Length = 119

 Score = 57.2 bits (139), Expect = 2e-11
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%)

Query: 38  KLWTARITAGAEEHGVP--YPLFREGLTRSNIMLDRKTLSDLAAWEPRTF-----KVKK 89
           +LW  RI A   E GV   Y  F   L +  ++L+RK L+ +A   P        ++ K
Sbjct: 59  RLWITRINAAIRERGVYYNYSKFIHDLYKRQLLLNRKILAQIAILNPNCIYMIYNEIIK 117


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 54/153 (35%)

Query: 38   KLWTARITAGAEEHGVPYPLFRE--GLTRSNIMLDRKTLSDLAAWEPRTFKVKKSTV--- 92
             +W       A+ H      F++  G +  +I+++           P        T+   
Sbjct: 1644 DVWNR-----ADNH------FKDTYGFSILDIVIN----------NP-----VNLTIHFG 1677

Query: 93   GTTMCRIYQFYTKPSYHSC-------ESQVQALDLYSMKVKF-HP---LTGTQTCAPLFT 141
            G    RI + Y+   + +        E   + ++ +S    F      L+ TQ     FT
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ-----FT 1732

Query: 142  RQ-TLSLTQIAAAKVIDDEVVGSRHLEQPKYFF 173
             Q  L+L + AA + +      S+ L      F
Sbjct: 1733 -QPALTLMEKAAFEDLK-----SKGLIPADATF 1759


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.134    0.422 

Gapped
Lambda     K      H
   0.267   0.0808    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,863,631
Number of extensions: 153271
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 7
Length of query: 184
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,244,745
Effective search space: 407495520
Effective search space used: 407495520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.4 bits)