RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12837
         (184 letters)



>d1gyza_ a.144.2.1 (A:) Ribosomal protein L20 {Aquifex aeolicus
          [TaxId: 63363]}
          Length = 60

 Score = 72.7 bits (179), Expect = 2e-18
 Identities = 20/47 (42%), Positives = 29/47 (61%)

Query: 40 WTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
          W ARI A    +G+ Y  F  GL ++ I LDRK L+D+A  +P+ F+
Sbjct: 1  WIARINAAVRAYGLNYSTFINGLKKAGIELDRKILADMAVRDPQAFE 47


>d2zjrn1 a.144.2.1 (N:2-118) Ribosomal protein L20 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 117

 Score = 69.7 bits (171), Expect = 1e-16
 Identities = 27/49 (55%), Positives = 33/49 (67%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           +LW  RI AGA  HG+ Y  F  GL R+NI L+RK L+D+AA EP  FK
Sbjct: 58  RLWIQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFK 106


>d2j01u1 a.144.2.1 (U:2-118) Ribosomal protein L20 {Thermus
           thermophilus [TaxId: 274]}
          Length = 117

 Score = 65.4 bits (160), Expect = 5e-15
 Identities = 22/49 (44%), Positives = 30/49 (61%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           +LW  RI A   +HG+ Y  F  GL ++ I +DRK L+DLA  EP+ F 
Sbjct: 58  RLWIVRINAACRQHGLNYSTFIHGLKKAGIEVDRKNLADLAVREPQVFA 106


>d2gyco1 a.144.2.1 (O:2-116) Ribosomal protein L20 {Escherichia coli
           [TaxId: 562]}
          Length = 115

 Score = 65.5 bits (160), Expect = 6e-15
 Identities = 19/49 (38%), Positives = 32/49 (65%)

Query: 38  KLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFK 86
           +LW ARI A A ++G+ Y  F  GL ++++ +DRK L+D+A ++   F 
Sbjct: 57  QLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFT 105


>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 285

 Score = 28.1 bits (62), Expect = 0.49
 Identities = 8/64 (12%), Positives = 19/64 (29%)

Query: 62  LTRSNIMLDRKTLSDLAAWEPRTFKVKKSTVGTTMCRIYQFYTKPSYHSCESQVQALDLY 121
           L  +NI++    +  +A +                 +    +T P            D++
Sbjct: 139 LRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVW 198

Query: 122 SMKV 125
           S  +
Sbjct: 199 SFGI 202


>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 263

 Score = 27.0 bits (59), Expect = 1.5
 Identities = 12/144 (8%), Positives = 39/144 (27%), Gaps = 10/144 (6%)

Query: 42  ARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLAAWEPRTFKVKKSTVGTTMCRIYQ 101
                    +     +    L   N ++    +  ++ +    F +      +T  +   
Sbjct: 107 CLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPV 166

Query: 102 FYTKPSYHSCESQVQALDLYSM-KVKFHPLTGTQTCAPLFTRQTLSLTQIAAAKVIDDEV 160
            +  P   S        D++S   + +   +  +      +   + +  I+    +    
Sbjct: 167 KWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEV-VEDISTGFRLYKPR 225

Query: 161 VGSRHLEQPKYFFRRDLLKKFWNH 184
           + S H+          ++   W  
Sbjct: 226 LASTHV--------YQIMNHCWKE 241


>d1bg6a1 a.100.1.5 (A:188-359) N-(1-D-carboxylethyl)-L-norvaline
          dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
          Length = 172

 Score = 25.6 bits (56), Expect = 3.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 46 AGAEEHGVPYPLFREGLTRS 65
          A   E G P+  + EG+T S
Sbjct: 23 AARCESGTPFQYYLEGITPS 42


>d2hgsa4 d.142.1.6 (A:3-201,A:304-474) Eukaryotic glutathione
           synthetase ATP-binding domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 370

 Score = 25.5 bits (56), Expect = 3.9
 Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 3/43 (6%)

Query: 36  IGKLWTARITAGAEEHGVPYPLFREGLTRSNIMLDRKTLSDLA 78
             +L+        E       L   GL RS+ M  R      A
Sbjct: 98  TARLFDIHKQVLKEGIAQTVFL---GLNRSDYMFQRSADGSPA 137


>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 283

 Score = 25.2 bits (54), Expect = 4.8
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 14/127 (11%)

Query: 62  LTRSNIMLDRKT---LSDLAAWEPRTFKVKKSTVGTTMCRIYQFYTKPSYHSCESQVQAL 118
           L   NI+++      +SD            ++T  T+  +I   +T P   S      A 
Sbjct: 136 LAARNILVNSNLVCKVSDFGLSR-VLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSAS 194

Query: 119 DLYSM-KVKFHPLTGTQTCAPLFTRQTLSLTQIAAAKVIDDEVVGSRHLEQPKYFFRRDL 177
           D++S   V +  +T  +      +   +        K I+D       ++ P       L
Sbjct: 195 DVWSFGIVMWEVMTYGERPYWELSNHEV-------MKAINDGFRLPTPMDCPSAI--YQL 245

Query: 178 LKKFWNH 184
           + + W  
Sbjct: 246 MMQCWQQ 252


>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 287

 Score = 24.3 bits (52), Expect = 9.9
 Identities = 8/64 (12%), Positives = 19/64 (29%)

Query: 62  LTRSNIMLDRKTLSDLAAWEPRTFKVKKSTVGTTMCRIYQFYTKPSYHSCESQVQALDLY 121
           L   N ++    L  +A +         +       +    +T P   +        D++
Sbjct: 141 LAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVW 200

Query: 122 SMKV 125
           +  V
Sbjct: 201 AFGV 204


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.422 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 711,509
Number of extensions: 30177
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 12
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.1 bits)