BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12838
(494 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQL|A Chain A, Crystal Structure Of The Fad Binding Domain Of Cytochrome
P450 Bm3 In Complex With Nadp+
pdb|4DQL|B Chain B, Crystal Structure Of The Fad Binding Domain Of Cytochrome
P450 Bm3 In Complex With Nadp+
Length = 393
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 123/394 (31%), Positives = 182/394 (46%), Gaps = 51/394 (12%)
Query: 89 LCEPALA-DVRHIKLKLPATLQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLTPSSRL 147
L +P A RH++++LP Y GD L V P N V + L S ++
Sbjct: 17 LQQPGSARSTRHLEIELPKEASYQEGDHLGVIPRNYEGIVNRVTARFG-----LDASQQI 71
Query: 148 RV-VQKNQYMPVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFT---PSELEQEKL 203
R+ ++ + +P A K +SVE+L Y +L R +A T P ++E E L
Sbjct: 72 RLEAEEEKLAHLPLA--KTVSVEELLQ-YVELQDPVTRTQLRAMAAKTVCPPHKVELEAL 128
Query: 204 TEFTSAEGQTDLLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSP 263
E + + Q A R T+LE+L +P + L IRPR +SI+SSP
Sbjct: 129 LEKQAYKEQV----LAKR--LTMLELLEKYPACE--MKFSEFIALLPSIRPRYYSISSSP 180
Query: 264 KTHSGELHLLVAIVKYKTKMLAPRY-GLCSNYLAALNPGDSVA--ISIKRGSFVFPKNEE 320
+ + + V++V + Y G+ SNYLA L GD++ IS + F PK+ E
Sbjct: 181 RVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQSEFTLPKDPE 240
Query: 321 RPLIMVGPGTGIAPFRSYIHTR--ISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA 378
PLIMVGPGTG+APFR ++ R + Q S HL+FGCR+ D+ + +E +NA
Sbjct: 241 TPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSE 300
Query: 379 NQLTF-------------YVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLV 425
+T YVQHVM + L +L+ A I G+ + M AV L+
Sbjct: 301 GIITLHTAFSRMPNQPKTYVQHVMEQDGKKLIELL-DQGAHFYICGDGSQMAPAVEATLM 359
Query: 426 ETIT-----------LELQDEEEAKQYATVLIAG 448
++ L LQ EE +YA + AG
Sbjct: 360 KSYADVHQVSEADARLWLQQLEEKGRYAKDVWAG 393
>pdb|4DQK|A Chain A, Crystal Structure Of The Fad Binding Domain Of Cytochrome
P450 Bm3
pdb|4DQK|B Chain B, Crystal Structure Of The Fad Binding Domain Of Cytochrome
P450 Bm3
Length = 391
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 123/394 (31%), Positives = 182/394 (46%), Gaps = 51/394 (12%)
Query: 89 LCEPALA-DVRHIKLKLPATLQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLTPSSRL 147
L +P A RH++++LP Y GD L V P N V + L S ++
Sbjct: 15 LQQPGSARSTRHLEIELPKEASYQEGDHLGVIPRNYEGIVNRVTARFG-----LDASQQI 69
Query: 148 RV-VQKNQYMPVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFT---PSELEQEKL 203
R+ ++ + +P A K +SVE+L Y +L R +A T P ++E E L
Sbjct: 70 RLEAEEEKLAHLPLA--KTVSVEELLQ-YVELQDPVTRTQLRAMAAKTVAPPHKVELEAL 126
Query: 204 TEFTSAEGQTDLLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSP 263
E + + Q A R T+LE+L +P + L IRPR +SI+SSP
Sbjct: 127 LEKQAYKEQV----LAKR--LTMLELLEKYPACE--MKFSEFIALLPSIRPRYYSISSSP 178
Query: 264 KTHSGELHLLVAIVKYKTKMLAPRY-GLCSNYLAALNPGDSVA--ISIKRGSFVFPKNEE 320
+ + + V++V + Y G+ SNYLA L GD++ IS + F PK+ E
Sbjct: 179 RVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQSEFTLPKDPE 238
Query: 321 RPLIMVGPGTGIAPFRSYIHTR--ISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA 378
PLIMVGPGTG+APFR ++ R + Q S HL+FGCR+ D+ + +E +NA
Sbjct: 239 TPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSE 298
Query: 379 NQLTF-------------YVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLV 425
+T YVQHVM + L +L+ A I G+ + M AV L+
Sbjct: 299 GIITLHTAFSRMPNQPKTYVQHVMEQDGKKLIELL-DQGAHFYICGDGSQMAPAVEATLM 357
Query: 426 ETIT-----------LELQDEEEAKQYATVLIAG 448
++ L LQ EE +YA + AG
Sbjct: 358 KSYADVHQVSEADARLWLQQLEEKGRYAKDVWAG 391
>pdb|1JA1|A Chain A, Cypor-Triple Mutant
pdb|1JA1|B Chain B, Cypor-Triple Mutant
Length = 622
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 163/355 (45%), Gaps = 33/355 (9%)
Query: 99 HIKLKLP-ATLQYSPGDVLLVHPHNRHSSVRKCLELL-QDRDKPLTPSSRLRVVQKNQYM 156
H++L + + ++Y GD + V+P N + V + E+L D D ++ ++ K
Sbjct: 246 HLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEESNKKHPF 305
Query: 157 PVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEF--TSAEGQTD 214
P P R L T+Y D+ P+ LA + EQE L + +S EG+
Sbjct: 306 PCPTTYRTAL------TYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKEL 359
Query: 215 LLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLV 274
L++ +R +L +L D+P + P+++L EL ++ R ++IASS K H +H+
Sbjct: 360 YLSWVVEARRHILAILQDYP--SLRPPIDHLCELLPRLQARYYAIASSSKVHPNSVHICA 417
Query: 275 AIVKYKTKMLAPRYGLCSNYLAALNPGDS------VAISIKRGSFVFPKNEERPLIMVGP 328
V+Y+ K G+ +++L A P V + +++ F P P+IMVGP
Sbjct: 418 VAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKSTTPVIMVGP 477
Query: 329 GTGIAPFRSYIHTR--ISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT---- 382
GTGIAPF +I R + Q L++GCR D+ + +E + LT
Sbjct: 478 GTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNV 537
Query: 383 ---------FYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETI 428
YVQH++ R L LI A + +AG+A +M V+ + +
Sbjct: 538 AFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVAGDARNMAKDVQNTFYDIV 592
>pdb|1AMO|A Chain A, Three-Dimensional Structure Of Nadph-Cytochrome P450
Reductase: Prototype For Fmn-And Fad-Containing Enzymes
pdb|1AMO|B Chain B, Three-Dimensional Structure Of Nadph-Cytochrome P450
Reductase: Prototype For Fmn-And Fad-Containing Enzymes
Length = 615
Score = 135 bits (339), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 162/356 (45%), Gaps = 33/356 (9%)
Query: 99 HIKLKLP-ATLQYSPGDVLLVHPHNRHSSVRKCLELL-QDRDKPLTPSSRLRVVQKNQYM 156
H++L + + ++Y GD + V+P N + V + E+L D D ++ ++ K
Sbjct: 239 HLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEESNKKHPF 298
Query: 157 PVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEF--TSAEGQTD 214
P P R L T+Y D+ P+ LA + EQE L + +S EG+
Sbjct: 299 PCPTTYRTAL------TYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKEL 352
Query: 215 LLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLV 274
L++ +R +L +L D+P + P+++L EL ++ R +SIASS K H +H+
Sbjct: 353 YLSWVVEARRHILAILQDYP--SLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICA 410
Query: 275 AIVKYKTKMLAPRYGLCSNYLAALNPGDS------VAISIKRGSFVFPKNEERPLIMVGP 328
V+Y+ K G+ +++L A P V + +++ F P P+IMVGP
Sbjct: 411 VAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKSTTPVIMVGP 470
Query: 329 GTGIAPFRSYIHTR--ISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT---- 382
GTGIAPF +I R + Q L++GCR D+ + +E + LT
Sbjct: 471 GTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNV 530
Query: 383 ---------FYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETIT 429
YVQH++ R L LI A + + G+A +M V+ + +
Sbjct: 531 AFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVA 586
>pdb|1J9Z|A Chain A, Cypor-W677g
pdb|1J9Z|B Chain B, Cypor-W677g
Length = 622
Score = 135 bits (339), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 162/355 (45%), Gaps = 33/355 (9%)
Query: 99 HIKLKLP-ATLQYSPGDVLLVHPHNRHSSVRKCLELL-QDRDKPLTPSSRLRVVQKNQYM 156
H++L + + ++Y GD + V+P N + V + E+L D D ++ ++ K
Sbjct: 246 HLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEESNKKHPF 305
Query: 157 PVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEF--TSAEGQTD 214
P P R L T+Y D+ P+ LA + EQE L + +S EG+
Sbjct: 306 PCPTTYRTAL------TYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKEL 359
Query: 215 LLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLV 274
L++ +R +L +L D+P + P+++L EL ++ R +SIASS K H +H+
Sbjct: 360 YLSWVVEARRHILAILQDYP--SLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICA 417
Query: 275 AIVKYKTKMLAPRYGLCSNYLAALNPGDS------VAISIKRGSFVFPKNEERPLIMVGP 328
V+Y+ K G+ +++L A P V + +++ F P P+IMVGP
Sbjct: 418 VAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKSTTPVIMVGP 477
Query: 329 GTGIAPFRSYIHTR--ISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT---- 382
GTGIAPF +I R + Q L++GCR D+ + +E + LT
Sbjct: 478 GTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNV 537
Query: 383 ---------FYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETI 428
YVQH++ R L LI A + + G+A +M V+ + +
Sbjct: 538 AFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIV 592
>pdb|3ES9|A Chain A, Nadph-Cytochrome P450 Reductase In An Open Conformation
pdb|3ES9|B Chain B, Nadph-Cytochrome P450 Reductase In An Open Conformation
pdb|3ES9|C Chain C, Nadph-Cytochrome P450 Reductase In An Open Conformation
Length = 618
Score = 134 bits (338), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 162/355 (45%), Gaps = 33/355 (9%)
Query: 99 HIKLKLP-ATLQYSPGDVLLVHPHNRHSSVRKCLELL-QDRDKPLTPSSRLRVVQKNQYM 156
H++L + + ++Y GD + V+P N + V + E+L D D ++ ++ K
Sbjct: 242 HLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEESNKKHPF 301
Query: 157 PVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEF--TSAEGQTD 214
P P R L T+Y D+ P+ LA + EQE L + +S EG+
Sbjct: 302 PCPTTYRTAL------TYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKEL 355
Query: 215 LLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLV 274
L++ +R +L +L D+P + P+++L EL ++ R +SIASS K H +H+
Sbjct: 356 YLSWVVEARRHILAILQDYP--SLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICA 413
Query: 275 AIVKYKTKMLAPRYGLCSNYLAALNPGDS------VAISIKRGSFVFPKNEERPLIMVGP 328
V+Y+ K G+ +++L A P V + +++ F P P+IMVGP
Sbjct: 414 VAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKSTTPVIMVGP 473
Query: 329 GTGIAPFRSYIHTR--ISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT---- 382
GTGIAPF +I R + Q L++GCR D+ + +E + LT
Sbjct: 474 GTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNV 533
Query: 383 ---------FYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETI 428
YVQH++ R L LI A + + G+A +M V+ + +
Sbjct: 534 AFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIV 588
>pdb|1JA0|A Chain A, Cypor-W677x
pdb|1JA0|B Chain B, Cypor-W677x
Length = 620
Score = 134 bits (338), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 162/355 (45%), Gaps = 33/355 (9%)
Query: 99 HIKLKLP-ATLQYSPGDVLLVHPHNRHSSVRKCLELL-QDRDKPLTPSSRLRVVQKNQYM 156
H++L + + ++Y GD + V+P N + V + E+L D D ++ ++ K
Sbjct: 246 HLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEESNKKHPF 305
Query: 157 PVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEF--TSAEGQTD 214
P P R L T+Y D+ P+ LA + EQE L + +S EG+
Sbjct: 306 PCPTTYRTAL------TYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKEL 359
Query: 215 LLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLV 274
L++ +R +L +L D+P + P+++L EL ++ R +SIASS K H +H+
Sbjct: 360 YLSWVVEARRHILAILQDYP--SLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICA 417
Query: 275 AIVKYKTKMLAPRYGLCSNYLAALNPGDS------VAISIKRGSFVFPKNEERPLIMVGP 328
V+Y+ K G+ +++L A P V + +++ F P P+IMVGP
Sbjct: 418 VAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKSTTPVIMVGP 477
Query: 329 GTGIAPFRSYIHTR--ISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT---- 382
GTGIAPF +I R + Q L++GCR D+ + +E + LT
Sbjct: 478 GTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNV 537
Query: 383 ---------FYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETI 428
YVQH++ R L LI A + + G+A +M V+ + +
Sbjct: 538 AFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIV 592
>pdb|3OJW|A Chain A, Disulfide Crosslinked Cytochrome P450 Reductase Inactive
pdb|3OJX|A Chain A, Disulfide Crosslinked Cytochrome P450 Reductase Inactive
Length = 622
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 160/355 (45%), Gaps = 33/355 (9%)
Query: 99 HIKLKLP-ATLQYSPGDVLLVHPHNRHSSVRKCLELL-QDRDKPLTPSSRLRVVQKNQYM 156
H++L + + ++Y GD + V+P N + V + E+L D D ++ ++ K
Sbjct: 246 HLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEESNKKHPF 305
Query: 157 PVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEF--TSAEGQTD 214
P P R L T+Y D+ P+ LA + EQE L + +S EG+
Sbjct: 306 PTPTTYRTAL------TYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKEL 359
Query: 215 LLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLV 274
L++ +R +L +L D+P + P+++L EL ++ R +SIASS K H +H+
Sbjct: 360 YLSWVVEARRHILAILQDYP--SLRPPIDHLLELLPRLQARYYSIASSSKVHPNSVHITA 417
Query: 275 AIVKYKTKMLAPRYGLCSNYLAALNPGDS------VAISIKRGSFVFPKNEERPLIMVGP 328
V+Y+ K G+ +++L A P V + + + F P P+IMVGP
Sbjct: 418 VAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVCKSQFRLPFKSTTPVIMVGP 477
Query: 329 GTGIAPFRSYIHTR--ISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT---- 382
GTGIAPF +I R + Q L++G R D+ + +E + LT
Sbjct: 478 GTGIAPFMGFIQERAWLREQGKEVGETLLYYGARRSDEDYLYREELARFHKDGALTQLNV 537
Query: 383 ---------FYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETI 428
YVQH++ R L LI A + + G+A +M V+ + +
Sbjct: 538 AFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIV 592
>pdb|3QE2|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
pdb|3QE2|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
Length = 618
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 172/366 (46%), Gaps = 35/366 (9%)
Query: 99 HIKLKLP-ATLQYSPGDVLLVHPHNRHSSVRKCLELL-QDRDKPLTPSSRLRVVQKNQYM 156
H++L + + ++Y GD + V+P N + V + ++L D D ++ ++ K
Sbjct: 243 HLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESNKKHPF 302
Query: 157 PVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEF--TSAEGQTD 214
P P + R L T+Y D+ P+ LA + EQE L + +S EG+
Sbjct: 303 PCPTSYRTAL------TYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKEL 356
Query: 215 LLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLV 274
L++ +R +L +L D P + P+++L EL ++ R +SIASS K H +H+
Sbjct: 357 YLSWVVEARRHILAILQDCP--SLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICA 414
Query: 275 AIVKYKTKMLAPRYGLCSNYLAALNP-GDS-----VAISIKRGSFVFPKNEERPLIMVGP 328
+V+Y+TK G+ +N+L A P G++ V + +++ F P P+IMVGP
Sbjct: 415 VVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGP 474
Query: 329 GTGIAPFRSYIHTR--ISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT---- 382
GTG+APF +I R + Q L++GCR D+ + +E + LT
Sbjct: 475 GTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNV 534
Query: 383 ---------FYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQ 433
YVQH++ + L LI A + + G+A +M V+ + I EL
Sbjct: 535 AFSREQSHKVYVQHLLKQDREHLWKLI-EGGAHIYVCGDARNMARDVQNTFYD-IVAELG 592
Query: 434 DEEEAK 439
E A+
Sbjct: 593 AMEHAQ 598
>pdb|3FJO|A Chain A, Structure Of Chimeric Yh Cpr
Length = 637
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 169/366 (46%), Gaps = 35/366 (9%)
Query: 99 HIKLKLP-ATLQYSPGDVLLVHPHNRHSSVRKCLELL-QDRDKPLTPSSRLRVVQKNQYM 156
H++L + + ++Y GD + V+P N + V + ++L D D ++ ++ K
Sbjct: 262 HLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESNKKHPF 321
Query: 157 PVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEF--TSAEGQTD 214
P P + R L T+Y D+ P+ LA + EQE L + +S EG+
Sbjct: 322 PCPTSYRTAL------TYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKEL 375
Query: 215 LLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLV 274
L++ +R +L +L D P + P+++L EL ++ R +SIASS K H +H+
Sbjct: 376 YLSWVVEARRHILAILQDCP--SLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICA 433
Query: 275 AIVKYKTKMLAPRYGLCSNYLAALNPGDS------VAISIKRGSFVFPKNEERPLIMVGP 328
+V+Y+TK G+ +N+L A P V + +++ F P P+IMVGP
Sbjct: 434 VVVEYETKAGRINKGVATNWLRAKEPAGENGGRALVPMFVRKSQFRLPFKATTPVIMVGP 493
Query: 329 GTGIAPFRSYIHTR--ISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT---- 382
GTG+APF +I R + Q L++GCR D+ + +E + LT
Sbjct: 494 GTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNV 553
Query: 383 ---------FYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQ 433
YVQH++ + L LI A + + G+A +M V+ + I EL
Sbjct: 554 AFSREQSHKVYVQHLLKQDREHLWKLI-EGGAHIYVCGDARNMARDVQNTFYD-IVAELG 611
Query: 434 DEEEAK 439
E A+
Sbjct: 612 AMEHAQ 617
>pdb|3QFS|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase
(FadNADPH Domain)
Length = 458
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 172/366 (46%), Gaps = 35/366 (9%)
Query: 99 HIKLKLP-ATLQYSPGDVLLVHPHNRHSSVRKCLELL-QDRDKPLTPSSRLRVVQKNQYM 156
H++L + + ++Y GD + V+P N + V + ++L D D ++ ++ K
Sbjct: 83 HLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESNKKHPF 142
Query: 157 PVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEF--TSAEGQTD 214
P P + R L T+Y D+ P+ LA + EQE L + +S EG+
Sbjct: 143 PCPTSYRTAL------TYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKEL 196
Query: 215 LLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLV 274
L++ +R +L +L D P + P+++L EL ++ R +SIASS K H +H+
Sbjct: 197 YLSWVVEARRHILAILQDCP--SLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICA 254
Query: 275 AIVKYKTKMLAPRYGLCSNYLAALNP-GDS-----VAISIKRGSFVFPKNEERPLIMVGP 328
+V+Y+TK G+ +N+L A P G++ V + +++ F P P+IMVGP
Sbjct: 255 VVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGP 314
Query: 329 GTGIAPFRSYIHTR--ISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT---- 382
GTG+APF +I R + Q L++GCR D+ + +E + LT
Sbjct: 315 GTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNV 374
Query: 383 ---------FYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQ 433
YVQH++ + L LI A + + G+A +M V+ + I EL
Sbjct: 375 AFSREQSHKVYVQHLLKQDREHLWKLI-EGGAHIYVCGDARNMARDVQNTFYD-IVAELG 432
Query: 434 DEEEAK 439
E A+
Sbjct: 433 AMEHAQ 438
>pdb|3QFC|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e
Mutant)
pdb|3QFC|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e
Mutant)
Length = 618
Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 171/366 (46%), Gaps = 35/366 (9%)
Query: 99 HIKLKLP-ATLQYSPGDVLLVHPHNRHSSVRKCLELL-QDRDKPLTPSSRLRVVQKNQYM 156
H++L + + ++Y GD + V+P N + V + ++L D D ++ ++ K
Sbjct: 243 HLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESNKKHPF 302
Query: 157 PVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEF--TSAEGQTD 214
P P + R L T+Y D+ P+ LA + EQE L + +S EG+
Sbjct: 303 PCPTSYRTAL------TYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKEL 356
Query: 215 LLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLV 274
L++ +R +L +L D P + P+++L EL ++ R +SIASS K H +H+
Sbjct: 357 YLSWVVEARRHILAILQDCP--SLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICA 414
Query: 275 AIVKYKTKMLAPRYGLCSNYLAALNP-GDS-----VAISIKRGSFVFPKNEERPLIMVGP 328
+V+Y+TK G +N+L A P G++ V + +++ F P P+IMVGP
Sbjct: 415 VVVEYETKAGRINKGEATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGP 474
Query: 329 GTGIAPFRSYIHTR--ISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT---- 382
GTG+APF +I R + Q L++GCR D+ + +E + LT
Sbjct: 475 GTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNV 534
Query: 383 ---------FYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQ 433
YVQH++ + L LI A + + G+A +M V+ + I EL
Sbjct: 535 AFSREQSHKVYVQHLLKQDREHLWKLI-EGGAHIYVCGDARNMARDVQNTFYD-IVAELG 592
Query: 434 DEEEAK 439
E A+
Sbjct: 593 AMEHAQ 598
>pdb|3QFR|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
(R457h Mutant)
pdb|3QFR|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
(R457h Mutant)
Length = 618
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/366 (27%), Positives = 168/366 (45%), Gaps = 35/366 (9%)
Query: 99 HIKLKLP-ATLQYSPGDVLLVHPHNRHSSVRKCLELL-QDRDKPLTPSSRLRVVQKNQYM 156
H++L + + ++Y GD + V+P N + V + ++L D D ++ ++ K
Sbjct: 243 HLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESNKKHPF 302
Query: 157 PVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEF--TSAEGQTD 214
P P + R L T+Y D+ P+ LA + EQE L + +S EG+
Sbjct: 303 PCPTSYRTAL------TYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKEL 356
Query: 215 LLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLV 274
L++ +R +L +L D P + P+++L EL ++ +SIASS K H +H+
Sbjct: 357 YLSWVVEARRHILAILQDCP--SLRPPIDHLCELLPRLQAHYYSIASSSKVHPNSVHICA 414
Query: 275 AIVKYKTKMLAPRYGLCSNYLAALNPGDS------VAISIKRGSFVFPKNEERPLIMVGP 328
+V+Y+TK G+ +N+L A P V + +++ F P P+IMVGP
Sbjct: 415 VVVEYETKAGRINKGVATNWLRAKEPAGENGGRALVPMFVRKSQFRLPFKATTPVIMVGP 474
Query: 329 GTGIAPFRSYIHTR--ISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT---- 382
GTG+APF +I R + Q L++GCR D+ + +E + LT
Sbjct: 475 GTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNV 534
Query: 383 ---------FYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQ 433
YVQH++ + L LI A + + G+A +M V+ + I EL
Sbjct: 535 AFSREQSHKVYVQHLLKQDREHLWKLI-EGGAHIYVCGDARNMARDVQNTFYD-IVAELG 592
Query: 434 DEEEAK 439
E A+
Sbjct: 593 AMEHAQ 598
>pdb|3QFT|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase
(FadNADPH DOMAIN And R457h Mutant)
Length = 458
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 171/366 (46%), Gaps = 35/366 (9%)
Query: 99 HIKLKLP-ATLQYSPGDVLLVHPHNRHSSVRKCLELL-QDRDKPLTPSSRLRVVQKNQYM 156
H++L + + ++Y GD + V+P N + V + ++L D D ++ ++ K
Sbjct: 83 HLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESNKKHPF 142
Query: 157 PVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEF--TSAEGQTD 214
P P + R L T+Y D+ P+ LA + EQE L + +S EG+
Sbjct: 143 PCPTSYRTAL------TYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKEL 196
Query: 215 LLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLV 274
L++ +R +L +L D P + P+++L EL ++ +SIASS K H +H+
Sbjct: 197 YLSWVVEARRHILAILQDCP--SLRPPIDHLCELLPRLQAHYYSIASSSKVHPNSVHICA 254
Query: 275 AIVKYKTKMLAPRYGLCSNYLAALNP-GDS-----VAISIKRGSFVFPKNEERPLIMVGP 328
+V+Y+TK G+ +N+L A P G++ V + +++ F P P+IMVGP
Sbjct: 255 VVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGP 314
Query: 329 GTGIAPFRSYIHTR--ISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT---- 382
GTG+APF +I R + Q L++GCR D+ + +E + LT
Sbjct: 315 GTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNV 374
Query: 383 ---------FYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQ 433
YVQH++ + L LI A + + G+A +M V+ + I EL
Sbjct: 375 AFSREQSHKVYVQHLLKQDREHLWKLI-EGGAHIYVCGDARNMARDVQNTFYD-IVAELG 432
Query: 434 DEEEAK 439
E A+
Sbjct: 433 AMEHAQ 438
>pdb|2QTZ|A Chain A, Crystal Structure Of The Nadp+-Bound Fad-Containing
Fnr-Like Module Of Human Methionine Synthase Reductase
Length = 539
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 106/384 (27%), Positives = 172/384 (44%), Gaps = 53/384 (13%)
Query: 110 YSPGDVLLVHPHNRHSSVRKCLELLQDRDK-PLTPSSRLRVVQKNQYMPVPYALRKPLSV 168
Y PGD V N S V+ L+ LQ DK +++ K + +P + S+
Sbjct: 148 YQPGDAFSVICPNSDSEVQSLLQRLQLEDKREHXVLLKIKADTKKKGATLPQHIPAGCSL 207
Query: 169 EQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDLLNYAHRPKRTVLE 228
+ + T+ ++ A PK+ L +T E+ +L E S +G D + +L+
Sbjct: 208 QFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDAXACLLD 267
Query: 229 MLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKY----KTKML 284
+L FP P+ L E ++PR +S ASS H G+LH + IV++ T++L
Sbjct: 268 LLLAFPSCQP--PLSLLLEHLPKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVL 325
Query: 285 APRYGLCSNYLAAL--------------NPGDSVA--ISI---KRGSFVFPKNEERPLIM 325
R G+C+ +LA L + G ++A ISI SF P + P+IM
Sbjct: 326 --RKGVCTGWLALLVASVLQPNIHASHEDSGKALAPKISIFPRTTNSFHLPDDPSIPIIM 383
Query: 326 VGPGTGIAPFRSYIHTRISNQ----TASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQL 381
VGPGTGIAPF ++ R Q + + LFFGCR++ D+ F +E ++ ++ L
Sbjct: 384 VGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRKELRHFLKHGIL 443
Query: 382 TF-------------------YVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVRE 422
T YVQ + H + ++ + + G+A +M V +
Sbjct: 444 THLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKNMAKDVHD 503
Query: 423 VLVETITLELQDE--EEAKQYATV 444
LV+ I+ E+ E E K AT+
Sbjct: 504 ALVQIISKEVGVEKLEAMKTLATL 527
>pdb|2QTL|A Chain A, Crystal Structure Of The Fad-Containing Fnr-Like Module Of
Human Methionine Synthase Reductase
Length = 539
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 106/384 (27%), Positives = 172/384 (44%), Gaps = 53/384 (13%)
Query: 110 YSPGDVLLVHPHNRHSSVRKCLELLQDRDK-PLTPSSRLRVVQKNQYMPVPYALRKPLSV 168
Y PGD V N S V+ L+ LQ DK +++ K + +P + S+
Sbjct: 148 YQPGDAFSVICPNSDSEVQSLLQRLQLEDKREHXVLLKIKADTKKKGATLPQHIPAGXSL 207
Query: 169 EQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDLLNYAHRPKRTVLE 228
+ + T+ ++ A PK+ L +T E+ +L E S +G D + +L+
Sbjct: 208 QFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDAXACLLD 267
Query: 229 MLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKY----KTKML 284
+L FP P+ L E ++PR +S ASS H G+LH + IV++ T++L
Sbjct: 268 LLLAFPSCQP--PLSLLLEHLPKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVL 325
Query: 285 APRYGLCSNYLAAL--------------NPGDSVA--ISI---KRGSFVFPKNEERPLIM 325
R G+C+ +LA L + G ++A ISI SF P + P+IM
Sbjct: 326 --RKGVCTGWLALLVASVLQPNIHASHEDSGKALAPKISIFPRTTNSFHLPDDPSIPIIM 383
Query: 326 VGPGTGIAPFRSYIHTRISNQ----TASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQL 381
VGPGTGIAPF ++ R Q + + LFFGCR++ D+ F +E ++ ++ L
Sbjct: 384 VGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRKELRHFLKHGIL 443
Query: 382 TF-------------------YVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVRE 422
T YVQ + H + ++ + + G+A +M V +
Sbjct: 444 THLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKNMAKDVHD 503
Query: 423 VLVETITLELQDE--EEAKQYATV 444
LV+ I+ E+ E E K AT+
Sbjct: 504 ALVQIISKEVGVEKLEAMKTLATL 527
>pdb|1F20|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase
FadNADP+ Domain At 1.9a Resolution
Length = 435
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 138/276 (50%), Gaps = 17/276 (6%)
Query: 108 LQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLTPSSRLRVVQ-KNQYMPVPYALRK-- 164
LQY PGD L V P N V +E L+D P ++ +++ +N + V +
Sbjct: 63 LQYQPGDHLGVFPGNHEDLVNALIERLEDA-PPANHVVKVEMLEERNTALGVISNWKDES 121
Query: 165 ---PLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDLLNYAHR 221
P ++ Q +Y D+ P + A +E E+++L + + + +
Sbjct: 122 RLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSKGLQEYEEWKWGKN 181
Query: 222 PKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKT 281
P T++E+L +FP + +P L S ++PR +SI+SSP + E+HL VAIV Y T
Sbjct: 182 P--TMVEVLEEFP--SIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHT 237
Query: 282 K-MLAP-RYGLCSNYLAALNPGDSVAISIKRG-SFVFPKNEERPLIMVGPGTGIAPFRSY 338
+ P +G+CS++L + D V ++ SF P+N + P I+VGPGTGIAPFRS+
Sbjct: 238 RDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSF 297
Query: 339 IHTR---ISNQTASAQRLHLFFGCRNQGADFYFNQE 371
R I ++ + + L FGCR D + +E
Sbjct: 298 WQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREE 333
>pdb|1TLL|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase
Reductase Module At 2.3 A Resolution.
pdb|1TLL|B Chain B, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase
Reductase Module At 2.3 A Resolution
Length = 688
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 138/276 (50%), Gaps = 17/276 (6%)
Query: 108 LQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLTPSSRLRVVQ-KNQYMPVPYALRK-- 164
LQY PGD L V P N V +E L+D P ++ +++ +N + V +
Sbjct: 284 LQYQPGDHLGVFPGNHEDLVNALIERLEDA-PPANHVVKVEMLEERNTALGVISNWKDES 342
Query: 165 ---PLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDLLNYAHR 221
P ++ Q +Y D+ P + A +E E+++L + + + +
Sbjct: 343 RLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSKGLQEYEEWKWGKN 402
Query: 222 PKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKT 281
P T++E+L +FP + +P L S ++PR +SI+SSP + E+HL VAIV Y T
Sbjct: 403 P--TMVEVLEEFP--SIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHT 458
Query: 282 K-MLAP-RYGLCSNYLAALNPGDSVAISIKRG-SFVFPKNEERPLIMVGPGTGIAPFRSY 338
+ P +G+CS++L + D V ++ SF P+N + P I+VGPGTGIAPFRS+
Sbjct: 459 RDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSF 518
Query: 339 IHTR---ISNQTASAQRLHLFFGCRNQGADFYFNQE 371
R I ++ + + L FGCR D + +E
Sbjct: 519 WQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREE 554
>pdb|1DDG|A Chain A, Crystal Structure Of Sir-Fp60
pdb|1DDG|B Chain B, Crystal Structure Of Sir-Fp60
pdb|1DDI|A Chain A, Crystal Structure Of Sir-Fp60
Length = 374
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 108/368 (29%), Positives = 168/368 (45%), Gaps = 52/368 (14%)
Query: 96 DVRHIKLKL-PATLQYSPGDVLLVHPHNRHSSVRKCLELLQDR-DKPLTPSSRLRVVQKN 153
DVRHI++ L + L+Y PGD L V N + V++ +ELL + D+P+T +
Sbjct: 30 DVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKT------ 83
Query: 154 QYMPVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQT 213
+P+ AL+ ++++L E A T SE T +
Sbjct: 84 --LPLNEALQ----------WHFELTVNTANIV-ENYATLTRSE------TLLPLVGDKA 124
Query: 214 DLLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLL 273
L +YA +++M+ P A E L L P+ PR +SIASS E+H+
Sbjct: 125 KLQHYA--ATTPIVDMVRFSPAQLDA---EALINLLRPLTPRLYSIASSQAEVENEVHVT 179
Query: 274 VAIVKYKTKMLAPRYGLCSNYLAA-LNPGDSVAISIKRG-SFVFPKNEERPLIMVGPGTG 331
V +V+Y + A R G S++LA + V + I+ +F P N E P+IM+GPGTG
Sbjct: 180 VGVVRYDVEGRA-RAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTG 238
Query: 332 IAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT--------- 382
IAPFR+++ R +++ LFFG + DF + EWQ ++ LT
Sbjct: 239 IAPFRAFMQQRAADEAPGKN--WLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRD 296
Query: 383 ----FYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETIT-LELQDEEE 437
YVQ + L I + A + + G+AN M V + L+E I D E
Sbjct: 297 QKEKVYVQDKLREQGAELWRWI-NDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEA 355
Query: 438 AKQYATVL 445
A ++ + L
Sbjct: 356 ADEFLSEL 363
>pdb|2BF4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BF4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BN4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
pdb|2BN4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
Length = 682
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 92/429 (21%), Positives = 171/429 (39%), Gaps = 75/429 (17%)
Query: 106 ATLQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLTPSSRLRVVQKNQYMPVPYALRKP 165
+ ++YS GD L V P N V + L + L P + + + + VP+ P
Sbjct: 288 SNIKYSTGDHLAVWPSNPLEKVEQFLSIFN-----LDPETIFDLKPLDPTVKVPFP--TP 340
Query: 166 LSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDL-LNYAHRPKR 224
++ Y ++ R F L F P+ +EKLT + + Q + + +
Sbjct: 341 TTIGAAIKHYLEITGPVSRQLFSSLIQFAPNADVKEKLTLLSKDKDQFAVEITSKYFNIA 400
Query: 225 TVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKML 284
L+ L+D VP+++L E + PR +SI+SS + +H+ + + L
Sbjct: 401 DALKYLSD-GAKWDTVPMQFLVESVPQMTPRYYSISSSSLSEKQTVHVTSIVENFPNPEL 459
Query: 285 A---PRYGLCSNYLAALNPGDS--------------------------VAISIKRGSFVF 315
P G+ +N L + + + + ++R +F
Sbjct: 460 PDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHYDLNGPRKLFANYKLPVHVRRSNFRL 519
Query: 316 PKNEERPLIMVGPGTGIAPFRSYIHTRIS--------NQTASAQRLHLFFGCRNQGADFY 367
P N P+IM+GPGTG+APFR +I R++ S + LF+G RN DF
Sbjct: 520 PSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNTD-DFL 578
Query: 368 FNQEWQNAIQANQLTFYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVET 427
+ EW + +F +++ +H +P ++V V+
Sbjct: 579 YQDEWPEYAKKLDGSF--------------EMVVAHSR----------LPN-TKKVYVQD 613
Query: 428 ITLELQDE--EEAKQYATVLIAGNANDMPTAVREVLVKVITLELQ-DEEKAKQYVEQMER 484
+ +D+ E A + + G+A M V LV +++ ++A + ++ ++
Sbjct: 614 KLKDYEDQVFEMINNGAFIYVCGDAKGMAKGVSTALVGILSRGKSITTDEATELIKMLKT 673
Query: 485 EGRLQTETW 493
GR Q + W
Sbjct: 674 SGRYQEDVW 682
>pdb|2BPO|A Chain A, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g,
Y75f, K78a.
pdb|2BPO|B Chain B, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g,
Y75f, K78a
Length = 682
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 92/429 (21%), Positives = 171/429 (39%), Gaps = 75/429 (17%)
Query: 106 ATLQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLTPSSRLRVVQKNQYMPVPYALRKP 165
+ ++YS GD L V P N V + L + L P + + + + VP+ P
Sbjct: 288 SNIKYSTGDHLAVWPSNPLEKVEQFLSIFN-----LDPETIFDLKPLDPTVKVPFP--TP 340
Query: 166 LSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDL-LNYAHRPKR 224
++ Y ++ R F L F P+ +EKLT + + Q + + +
Sbjct: 341 TTIGAAIKHYLEITGPVSRQLFSSLIQFAPNADVKEKLTLLSKDKDQFAVEITSKYFNIA 400
Query: 225 TVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKML 284
L+ L+D VP+++L E + PR +SI+SS + +H+ + + L
Sbjct: 401 DALKYLSD-GAKWDTVPMQFLVESVPQMTPRYYSISSSSLSEKQTVHVTSIVENFPNPEL 459
Query: 285 A---PRYGLCSNYLAALNPGDS--------------------------VAISIKRGSFVF 315
P G+ +N L + + + + ++R +F
Sbjct: 460 PDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHYDLNGPRKLFANYKLPVHVRRSNFRL 519
Query: 316 PKNEERPLIMVGPGTGIAPFRSYIHTRIS--------NQTASAQRLHLFFGCRNQGADFY 367
P N P+IM+GPGTG+APFR +I R++ S + LF+G RN DF
Sbjct: 520 PSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNTD-DFL 578
Query: 368 FNQEWQNAIQANQLTFYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVET 427
+ EW + +F +++ +H +P ++V V+
Sbjct: 579 YQDEWPEYAKKLDGSF--------------EMVVAHSR----------LPN-TKKVYVQD 613
Query: 428 ITLELQDE--EEAKQYATVLIAGNANDMPTAVREVLVKVITLELQ-DEEKAKQYVEQMER 484
+ +D+ E A + + G+A M V LV +++ ++A + ++ ++
Sbjct: 614 KLKDYEDQVFEMINNGAFIYVCGDAKGMAKGVSTALVGILSRGKSITTDEATELIKMLKT 673
Query: 485 EGRLQTETW 493
GR Q + W
Sbjct: 674 SGRYQEDVW 682
>pdb|1GAQ|A Chain A, Crystal Structure Of The Complex Between Ferredoxin And
Ferredoxin-Nadp+ Reductase
pdb|1GAQ|C Chain C, Crystal Structure Of The Complex Between Ferredoxin And
Ferredoxin-Nadp+ Reductase
pdb|1GAW|A Chain A, Crystal Structure Analysis Of The Ferredoxin-Nadp+
Reductase From Maize Leaf
pdb|1GAW|B Chain B, Crystal Structure Analysis Of The Ferredoxin-Nadp+
Reductase From Maize Leaf
Length = 314
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 251 PIRPRAFSIASSPKTHSGE---LHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAIS 307
P + R +SIASS G+ + L V + Y G+CSN+L L PGD+V I+
Sbjct: 89 PHKVRLYSIASSAIGDFGDSKTVSLCVKRLIYTNDAGEIVKGVCSNFLCDLQPGDNVQIT 148
Query: 308 IKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYI 339
G + PK+ +IM+ GTGIAPFRS++
Sbjct: 149 GPVGKEMLMPKDPNATIIMLATGTGIAPFRSFL 181
>pdb|1QGA|A Chain A, Pea Fnr Y308w Mutant In Complex With Nadp+
pdb|1QGA|B Chain B, Pea Fnr Y308w Mutant In Complex With Nadp+
Length = 308
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 251 PIRPRAFSIASSPKTHSGE---LHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAIS 307
P + R +SIASS G+ + L V + Y G+CSN+L L PG V I+
Sbjct: 83 PHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVCSNFLCDLKPGSEVKIT 142
Query: 308 IKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYI 339
G + PK+ +IM+G GTGIAPFRS++
Sbjct: 143 GPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFL 175
>pdb|4AF6|A Chain A, Pea Fnr L268v Mutant
pdb|4AF6|B Chain B, Pea Fnr L268v Mutant
Length = 308
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 251 PIRPRAFSIASSPKTHSGE---LHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAIS 307
P + R +SIASS G+ + L V + Y G+CSN+L L PG V I+
Sbjct: 83 PHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVCSNFLCDLKPGSEVKIT 142
Query: 308 IKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYI 339
G + PK+ +IM+G GTGIAPFRS++
Sbjct: 143 GPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFL 175
>pdb|1QG0|A Chain A, Wild-type Pea Fnr
pdb|1QG0|B Chain B, Wild-type Pea Fnr
Length = 308
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 251 PIRPRAFSIASSPKTHSGE---LHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAIS 307
P + R +SIASS G+ + L V + Y G+CSN+L L PG V I+
Sbjct: 83 PHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVCSNFLCDLKPGSEVKIT 142
Query: 308 IKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYI 339
G + PK+ +IM+G GTGIAPFRS++
Sbjct: 143 GPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFL 175
>pdb|1QFY|A Chain A, Pea Fnr Y308s Mutant In Complex With Nadp+
pdb|1QFY|B Chain B, Pea Fnr Y308s Mutant In Complex With Nadp+
pdb|1QFZ|A Chain A, Pea Fnr Y308s Mutant In Complex With Nadph
pdb|1QFZ|B Chain B, Pea Fnr Y308s Mutant In Complex With Nadph
Length = 308
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 251 PIRPRAFSIASSPKTHSGE---LHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAIS 307
P + R +SIASS G+ + L V + Y G+CSN+L L PG V I+
Sbjct: 83 PHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVCSNFLCDLKPGSEVKIT 142
Query: 308 IKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYI 339
G + PK+ +IM+G GTGIAPFRS++
Sbjct: 143 GPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFL 175
>pdb|3MHP|A Chain A, Fnr-Recruitment To The Thylakoid
pdb|3MHP|B Chain B, Fnr-Recruitment To The Thylakoid
Length = 296
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 251 PIRPRAFSIASSPKTHSGE---LHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAIS 307
P + R +SIASS G+ + L V + Y G+CSN+L L PG V I+
Sbjct: 70 PHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVCSNFLCDLKPGSEVKIT 129
Query: 308 IKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYI 339
G + PK+ +IM+G GTGIAPFRS++
Sbjct: 130 GPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFL 162
>pdb|4AF7|A Chain A, Pea Fnr C266m Mutant
pdb|4AF7|B Chain B, Pea Fnr C266m Mutant
Length = 308
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 251 PIRPRAFSIASSPKTHSGE---LHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAIS 307
P + R +SIASS G+ + L V + Y G+CSN+L L PG V I+
Sbjct: 83 PHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVCSNFLCDLKPGSEVKIT 142
Query: 308 IKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYI 339
G + PK+ +IM+G GTGIAPFRS++
Sbjct: 143 GPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFL 175
>pdb|1SM4|A Chain A, Crystal Structure Analysis Of The Ferredoxin-Nadp+
Reductase From Paprika
pdb|1SM4|B Chain B, Crystal Structure Analysis Of The Ferredoxin-Nadp+
Reductase From Paprika
Length = 296
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 251 PIRPRAFSIASSPKTHSGE---LHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAIS 307
P + R +SIASS G+ + L V + Y G+CSN+L L PG V I+
Sbjct: 71 PHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDKGEEVKGVCSNFLCDLKPGADVKIT 130
Query: 308 IKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYI 339
G + PK+ +IM+G GTGIAPFRS++
Sbjct: 131 GPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFL 163
>pdb|1BX1|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase)
Mutant E312q
Length = 314
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 251 PIRPRAFSIASSPKTHSGE---LHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAIS 307
P + R +SIASS G+ + L V + Y G+CSN+L L PG V ++
Sbjct: 89 PHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLT 148
Query: 308 IKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYI 339
G + PK+ +IM+G GTGIAPFRS++
Sbjct: 149 GPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFL 181
>pdb|1FNB|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase
At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'-
Phospho-5'-Amp Bound States
pdb|1FNC|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase
At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'-
Phospho-5'-Amp Bound States
pdb|1FND|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase
At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'-
Phospho-5'-Amp Bound States
Length = 314
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 251 PIRPRAFSIASSPKTHSGE---LHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAIS 307
P + R +SIASS G+ + L V + Y G+CSN+L L PG V ++
Sbjct: 89 PHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLT 148
Query: 308 IKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYI 339
G + PK+ +IM+G GTGIAPFRS++
Sbjct: 149 GPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFL 181
>pdb|1FRQ|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase)
Mutant E312a
Length = 314
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 251 PIRPRAFSIASSPKTHSGE---LHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAIS 307
P + R +SIASS G+ + L V + Y G+CSN+L L PG V ++
Sbjct: 89 PHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLT 148
Query: 308 IKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYI 339
G + PK+ +IM+G GTGIAPFRS++
Sbjct: 149 GPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFL 181
>pdb|3VO1|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+
Reductase Ii
pdb|3VO1|B Chain B, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+
Reductase Ii
Length = 314
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 251 PIRPRAFSIASSPKTHSGE---LHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAIS 307
P + R +SIASS G+ + L V + Y G+CSN+L L PG V I+
Sbjct: 89 PHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEVVKGVCSNFLCDLKPGAEVKIT 148
Query: 308 IKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYI 339
G + PK+ +IM+ GTGIAPFRS++
Sbjct: 149 GPVGKEMLMPKDPNATIIMLATGTGIAPFRSFL 181
>pdb|1BX0|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase)
Mutant E312l
Length = 314
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 251 PIRPRAFSIASSPKTHSGE---LHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAIS 307
P + R +SIASS G+ + L V + Y G+CSN+L L PG V ++
Sbjct: 89 PHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLT 148
Query: 308 IKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYI 339
G + PK+ +IM+G GTGIAPFRS++
Sbjct: 149 GPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFL 181
>pdb|2XNC|A Chain A, Crystal Structure Of An Engineered Ferredoxin Nadp
Reductase (Fnr) From Pisum Sativum
pdb|2XNC|B Chain B, Crystal Structure Of An Engineered Ferredoxin Nadp
Reductase (Fnr) From Pisum Sativum
Length = 315
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 251 PIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKR 310
P + R +SIASS G+ + VK G+CSN+L L PG V I+
Sbjct: 98 PHKLRLYSIASSAIGDFGDSKTVSLCVKRVPD------GVCSNFLCDLKPGSEVKITGPV 151
Query: 311 GS-FVFPKNEERPLIMVGPGTGIAPFRSYI 339
G + PK+ +IM+G GTGIAPFRS++
Sbjct: 152 GKEMLMPKDPNATVIMLGTGTGIAPFRSFL 181
>pdb|3VO2|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+
Reductase Iii
pdb|3VO2|B Chain B, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+
Reductase Iii
Length = 310
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 251 PIRPRAFSIASSPKTHSGE---LHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAIS 307
P + R +SIASS G+ + L V + Y G+CSN+L L PG V I+
Sbjct: 85 PHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGADVKIT 144
Query: 308 IKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYI 339
G + PK+ +IM+ GTGIAPFRS++
Sbjct: 145 GPVGKEMLMPKDPNATVIMLATGTGIAPFRSFL 177
>pdb|1FRN|A Chain A, The Involvement Of Ser96 In The Catalytic Mechanism Of
Ferredoxin-Nadp+ Reductase: Structure-Function
Relationship As Studied By Site-Directed Mutagenesis And
X- Ray Crystallography
Length = 314
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 251 PIRPRAFSIASSPKTHSGE---LHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAIS 307
P + R + IASS G+ + L V + Y G+CSN+L L PG V ++
Sbjct: 89 PHKLRLYVIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLT 148
Query: 308 IKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYI 339
G + PK+ +IM+G GTGIAPFRS++
Sbjct: 149 GPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFL 181
>pdb|2BSA|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Complexed
With Nadp
Length = 303
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 251 PIRPRAFSIASS---PKTHSGELHLLVAIVKYK-TKMLAPRYGLCSNYLAALNPGDSVAI 306
P + R +SIAS+ + L V ++YK + A YG+CS YL + PG V I
Sbjct: 73 PEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGATVYGVCSTYLTHIEPGSEVKI 132
Query: 307 SIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
+ G + P + E +IM+ GTGIAP R+Y+ + +A + F G
Sbjct: 133 TGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKG 185
>pdb|1E62|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Arg (K75r)
Length = 304
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 251 PIRPRAFSIASS---PKTHSGELHLLVAIVKYKTKMLAPR-YGLCSNYLAALNPGDSVAI 306
P R R +SIAS+ + L V ++YK YG+CS YL + PG V I
Sbjct: 74 PERLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKI 133
Query: 307 SIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
+ G + P + E +IM+ GTGIAP R+Y+ + +A + F G
Sbjct: 134 TGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKG 186
>pdb|1QH0|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 76 Mutated By
Asp And Leu 78 Mutated By Asp
Length = 295
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 251 PIRPRAFSIASS---PKTHSGELHLLVAIVKYKTKMLAPR-YGLCSNYLAALNPGDSVAI 306
P + R +SIAS+ + L V ++YK YG+CS YL + PG V I
Sbjct: 65 PEKDRDYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKI 124
Query: 307 SIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
+ G + P + E +IM+ GTGIAP R+Y+ + +A + F G
Sbjct: 125 TGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKG 177
>pdb|3JQQ|A Chain A, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|B Chain B, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|C Chain C, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|D Chain D, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|E Chain E, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|F Chain F, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
Length = 316
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 94/219 (42%), Gaps = 43/219 (19%)
Query: 255 RAFSIASSPKTHSGELHLLVAIVKYKTKMLAPR---YGLCSNYLAALNPGDSVAISIKRG 311
R +SI+SS + L + + I KY+ AP YG CS ++ L D + ++ G
Sbjct: 101 RLYSISSSNNMEN--LSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHG 158
Query: 312 SFVFPKN---EERPLIMVGPGTGIAPFRSY-----------IHTRISNQTASAQRLHLFF 357
F P + + I + GTGI+P+ S+ ++ R SN T + +++
Sbjct: 159 YFNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTG---YITIYY 215
Query: 358 GCRNQGADFYFNQ-EWQNAIQANQL---------------TFYVQHVMSRHLPLLQDLIC 401
G N+ + Y N+ E+ + N + +FYVQ + + +L
Sbjct: 216 GVYNEDSILYLNELEYFQKMYPNNINIHYVFSYKQNSDATSFYVQDEIYKRKTEFLNLFN 275
Query: 402 SHQATVLIAGNANDMPTAVREVLVETITLELQDEEEAKQ 440
+++ + I G ++R +++ + Q +E+ K+
Sbjct: 276 NYKCELYICG-----KKSIRYKVMDILKSHDQFDEKKKK 309
>pdb|1QGZ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 78 Replaced By
Asp (L78d)
Length = 295
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 251 PIRPRAFSIASS---PKTHSGELHLLVAIVKYKTKMLAPR-YGLCSNYLAALNPGDSVAI 306
P + R +SIAS+ + L V ++YK YG+CS YL + PG V I
Sbjct: 65 PEKLRDYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKI 124
Query: 307 SIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
+ G + P + E +IM+ GTGIAP R+Y+ + +A + F G
Sbjct: 125 TGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKG 177
>pdb|2OK7|A Chain A, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|B Chain B, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|C Chain C, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|D Chain D, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|E Chain E, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|F Chain F, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK8|A Chain A, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|B Chain B, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|C Chain C, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|D Chain D, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
Length = 316
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 95/219 (43%), Gaps = 43/219 (19%)
Query: 255 RAFSIASSPKTHSGELHLLVAIVKYKTKMLAPR---YGLCSNYLAALNPGDSVAISIKRG 311
R +SI+SS + L + + I KY+ AP YG CS ++ L D + ++ G
Sbjct: 101 RLYSISSSNNMEN--LSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHG 158
Query: 312 SFVFPKN---EERPLIMVGPGTGIAPFRSY-----------IHTRISNQTASAQRLHLFF 357
F P + + I + GTGI+P+ S+ ++ R SN T + +++
Sbjct: 159 YFNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTG---YITIYY 215
Query: 358 GCRNQGADFYFNQ-EWQNAIQANQL---------------TFYVQHVMSRHLPLLQDLIC 401
G N+ + Y N+ E+ + N + +FYVQ + + +L
Sbjct: 216 GVYNEDSILYLNELEYFQKMYPNNINIHYVFSYKQNSDATSFYVQDEIYKRKTEFLNLFN 275
Query: 402 SHQATVLIAGNANDMPTAVREVLVETITLELQDEEEAKQ 440
+++ + I G+ ++R +++ + Q +E+ K+
Sbjct: 276 NYKCELYICGHK-----SIRYKVMDILKSHDQFDEKKKK 309
>pdb|1BJK|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Arg 264 Replaced By
Glu (r264e)
Length = 295
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 251 PIRPRAFSIASS---PKTHSGELHLLVAIVKYKTKMLAPR-YGLCSNYLAALNPGDSVAI 306
P + R +SIAS+ + L V ++YK YG+CS YL + PG V I
Sbjct: 65 PEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKI 124
Query: 307 SIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
+ G + P + E +IM+ GTGIAP R+Y+ + +A + F G
Sbjct: 125 TGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKG 177
>pdb|1W35|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: Y 303 W)
pdb|1W87|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 W) Complexed
With Nadp By Cocrystallization
pdb|1W87|B Chain B, Ferredoxin-Nadp Reductase (Mutation: Y 303 W) Complexed
With Nadp By Cocrystallization
Length = 304
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 251 PIRPRAFSIASS---PKTHSGELHLLVAIVKYKTKMLAPR-YGLCSNYLAALNPGDSVAI 306
P + R +SIAS+ + L V ++YK YG+CS YL + PG V I
Sbjct: 74 PEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKI 133
Query: 307 SIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
+ G + P + E +IM+ GTGIAP R+Y+ + +A + F G
Sbjct: 134 TGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKG 186
>pdb|1QUF|A Chain A, X-Ray Structure Of A Complex Nadp+-Ferredoxin:nadp+
Reductase From The Cyanobacterium Anabaena Pcc 7119 At
2.25 Angstroms
Length = 304
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 251 PIRPRAFSIASS---PKTHSGELHLLVAIVKYKTKMLAPR-YGLCSNYLAALNPGDSVAI 306
P + R +SIAS+ + L V ++YK YG+CS YL + PG V I
Sbjct: 74 PEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKI 133
Query: 307 SIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
+ G + P + E +IM+ GTGIAP R+Y+ + +A + F G
Sbjct: 134 TGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKG 186
>pdb|1GO2|A Chain A, Structure Of Ferredoxin-nadp+ Reductase With Lys 72
Replaced By Glu (k72e)
Length = 304
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 251 PIRPRAFSIASS---PKTHSGELHLLVAIVKYKTKMLAPR-YGLCSNYLAALNPGDSVAI 306
P + R +SIAS+ + L V ++YK YG+CS YL + PG V I
Sbjct: 74 PEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKI 133
Query: 307 SIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
+ G + P + E +IM+ GTGIAP R+Y+ + +A + F G
Sbjct: 134 TGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKG 186
>pdb|1EWY|A Chain A, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase
Complex
pdb|1EWY|B Chain B, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase
Complex
Length = 303
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 251 PIRPRAFSIASS---PKTHSGELHLLVAIVKYKTKMLAPR-YGLCSNYLAALNPGDSVAI 306
P + R +SIAS+ + L V ++YK YG+CS YL + PG V I
Sbjct: 73 PEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKI 132
Query: 307 SIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
+ G + P + E +IM+ GTGIAP R+Y+ + +A + F G
Sbjct: 133 TGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKG 185
>pdb|1H85|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Val 136 Replaced By
Leu (V136l)
Length = 295
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 251 PIRPRAFSIASS---PKTHSGELHLLVAIVKYKTKMLAPR-YGLCSNYLAALNPGDSVAI 306
P + R +SIAS+ + L V ++YK YG+CS YL + PG V I
Sbjct: 65 PEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKI 124
Query: 307 SIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
+ G + P + E +IM+ GTGIAP R+Y+ + +A + F G
Sbjct: 125 TGPLGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKG 177
>pdb|1QUE|A Chain A, X-Ray Structure Of The Ferredoxin:nadp+ Reductase From The
Cyanobacterium Anabaena Pcc 7119 At 1.8 Angstroms
Length = 303
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 251 PIRPRAFSIASS---PKTHSGELHLLVAIVKYKTKMLAPR-YGLCSNYLAALNPGDSVAI 306
P + R +SIAS+ + L V ++YK YG+CS YL + PG V I
Sbjct: 73 PEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKI 132
Query: 307 SIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
+ G + P + E +IM+ GTGIAP R+Y+ + +A + F G
Sbjct: 133 TGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKG 185
>pdb|2X3U|A Chain A, Ferredoxin-Nadp Reductase Mutant With Tyr 303 Replaced By
Phe (Y303f)
Length = 303
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 251 PIRPRAFSIASS---PKTHSGELHLLVAIVKYKTKMLAPR-YGLCSNYLAALNPGDSVAI 306
P + R +SIAS+ + L V ++YK YG+CS YL + PG V I
Sbjct: 73 PEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKI 132
Query: 307 SIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
+ G + P + E +IM+ GTGIAP R+Y+ + +A + F G
Sbjct: 133 TGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKG 185
>pdb|1W34|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S)
Length = 304
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 251 PIRPRAFSIASS---PKTHSGELHLLVAIVKYKTKMLAPR-YGLCSNYLAALNPGDSVAI 306
P + R +SIAS+ + L V ++YK YG+CS YL + PG V I
Sbjct: 74 PEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKI 133
Query: 307 SIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
+ G + P + E +IM+ GTGIAP R+Y+ + +A + F G
Sbjct: 134 TGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKG 186
>pdb|1OGJ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 263 Replaced By
Pro (L263p)
Length = 303
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 251 PIRPRAFSIASS---PKTHSGELHLLVAIVKYKTKMLAPR-YGLCSNYLAALNPGDSVAI 306
P + R +SIAS+ + L V ++YK YG+CS YL + PG V I
Sbjct: 73 PEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKI 132
Query: 307 SIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
+ G + P + E +IM+ GTGIAP R+Y+ + +A + F G
Sbjct: 133 TGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKG 185
>pdb|1GJR|A Chain A, Ferredoxin-Nadp+ Reductase Complexed With Nadp+ By
Cocrystallization
Length = 304
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 251 PIRPRAFSIASS---PKTHSGELHLLVAIVKYKTKMLAPR-YGLCSNYLAALNPGDSVAI 306
P + R +SIAS+ + L V ++YK YG+CS YL + PG V I
Sbjct: 74 PEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKI 133
Query: 307 SIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
+ G + P + E +IM+ GTGIAP R+Y+ + +A + F G
Sbjct: 134 TGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKG 186
>pdb|1GR1|A Chain A, Structure Of Ferredoxin-Nadp+ Reductase With Glu 139
Replaced By Lys (E139k)
Length = 303
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 251 PIRPRAFSIASS---PKTHSGELHLLVAIVKYKTKMLAPR-YGLCSNYLAALNPGDSVAI 306
P + R +SIAS+ + L V ++YK YG+CS YL + PG V I
Sbjct: 73 PEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKI 132
Query: 307 SIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
+ G + P + E +IM+ GTGIAP R+Y+ + +A + F G
Sbjct: 133 TGPVGKKMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKG 185
>pdb|1B2R|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: E 301 A)
Length = 304
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 251 PIRPRAFSIASS---PKTHSGELHLLVAIVKYKTKMLAPR-YGLCSNYLAALNPGDSVAI 306
P + R +SIAS+ + L V ++YK YG+CS YL + PG V I
Sbjct: 74 PEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKI 133
Query: 307 SIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
+ G + P + E +IM+ GTGIAP R+Y+ + +A + F G
Sbjct: 134 TGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKG 186
>pdb|1BQE|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By
Gly (T155g)
Length = 295
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 251 PIRPRAFSIASS---PKTHSGELHLLVAIVKYKTKMLAPR-YGLCSNYLAALNPGDSVAI 306
P + R +SIAS+ + L V ++YK YG+CS YL + PG V I
Sbjct: 65 PEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKI 124
Query: 307 SIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
+ G + P + E +IM+ GTGIAP R+Y+ + +A + F G
Sbjct: 125 TGPVGKEMLLPDDPEANVIMLAGGTGIAPMRTYLWRMFKDAERAANPEYQFKG 177
>pdb|3JQP|A Chain A, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|B Chain B, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|C Chain C, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|D Chain D, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|E Chain E, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|F Chain F, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQR|A Chain A, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum
Length = 316
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 94/219 (42%), Gaps = 43/219 (19%)
Query: 255 RAFSIASSPKTHSGELHLLVAIVKYKTKMLAPR---YGLCSNYLAALNPGDSVAISIKRG 311
R +SI+SS + L + + I KY+ AP YG CS ++ L D + ++ G
Sbjct: 101 RLYSISSSNNMEN--LSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHG 158
Query: 312 SFVFPKN---EERPLIMVGPGTGIAPFRSY-----------IHTRISNQTASAQRLHLFF 357
F P + + I + GTGI+P+ S+ ++ R SN T + +++
Sbjct: 159 YFNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTG---YITIYY 215
Query: 358 GCRNQGADFYFNQ-EWQNAIQANQL---------------TFYVQHVMSRHLPLLQDLIC 401
G N+ + Y N+ E+ + N + +FYVQ + + +L
Sbjct: 216 GVYNEDSILYLNELEYFQKMYPNNINIHYVFSYKQNSDATSFYVQDEIYKRKTEFLNLFN 275
Query: 402 SHQATVLIAGNANDMPTAVREVLVETITLELQDEEEAKQ 440
+++ + I G ++R +++ + Q +E+ K+
Sbjct: 276 NYKCELYICG-----LKSIRYKVMDILKSHDQFDEKKKK 309
>pdb|1E64|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Gln (K75q)
Length = 304
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 251 PIRPRAFSIASS---PKTHSGELHLLVAIVKYKTKMLAPR-YGLCSNYLAALNPGDSVAI 306
P + R +SIAS+ + L V ++YK YG+CS YL + PG V I
Sbjct: 74 PEQLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKI 133
Query: 307 SIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
+ G + P + E +IM+ GTGIAP R+Y+ + +A + F G
Sbjct: 134 TGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKG 186
>pdb|1QGY|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Glu (K75e)
Length = 295
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 255 RAFSIASS---PKTHSGELHLLVAIVKYKTKMLAPR-YGLCSNYLAALNPGDSVAISIKR 310
R +SIAS+ + L V ++YK YG+CS YL + PG V I+
Sbjct: 69 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 128
Query: 311 GS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
G + P + E +IM+ GTGIAP R+Y+ + +A + F G
Sbjct: 129 GKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKG 177
>pdb|1E63|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Ser (K75s)
Length = 304
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 255 RAFSIASS---PKTHSGELHLLVAIVKYKTKMLAPR-YGLCSNYLAALNPGDSVAISIKR 310
R +SIAS+ + L V ++YK YG+CS YL + PG V I+
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 311 GS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
G + P + E +IM+ GTGIAP R+Y+ + +A + F G
Sbjct: 138 GKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKG 186
>pdb|1OGI|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By
Gly And Ala 160 Replaced By Thr (T155g-A160t)
Length = 303
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 251 PIRPRAFSIASS---PKTHSGELHLLVAIVKYKTKMLAPR-YGLCSNYLAALNPGDSVAI 306
P + R +SIAS+ + L V ++YK YG+CS YL + PG V I
Sbjct: 73 PEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKI 132
Query: 307 SIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
+ G + P + E +IM+ GTGI P R+Y+ + +A + F G
Sbjct: 133 TGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKG 185
>pdb|1H42|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By
Gly, Ala 160 Replaced By Thr And Leu 263 Replaced By Pro
(T155g-A160t-L263p)
Length = 304
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 251 PIRPRAFSIASS---PKTHSGELHLLVAIVKYKTKMLAPR-YGLCSNYLAALNPGDSVAI 306
P + R +SIAS+ + L V ++YK YG+CS YL + PG V I
Sbjct: 74 PEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKI 133
Query: 307 SIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
+ G + P + E +IM+ GTGI P R+Y+ + +A + F G
Sbjct: 134 TGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKG 186
>pdb|2BMW|A Chain A, Ferredoxin: Nadp+reductase Mutant With Thr 155 Replaced By
Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro,
Arg 264 Replaced By Pro And Gly 265 Replaced By Pro
(T155g- A160t-L263p-R264p-G265p)
Length = 304
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 251 PIRPRAFSIASS---PKTHSGELHLLVAIVKYKTKMLAPR-YGLCSNYLAALNPGDSVAI 306
P + R +SIAS+ + L V ++YK YG+CS YL + PG V I
Sbjct: 74 PEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKI 133
Query: 307 SIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
+ G + P + E +IM+ GTGI P R+Y+ + +A + F G
Sbjct: 134 TGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKG 186
>pdb|2VYQ|A Chain A, Ferredoxin:nadp Reductase Mutant With Thr 155 Replaced By
Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro
And Tyr 303 Replaced By Ser (T155g-A160t-L263p-Y303s)
pdb|2VZL|A Chain A, Ferredoxin-Nadp Reductase (Mutations: T155g, A160t, L263p
And Y303s) Complexed With Nad By Cocrystallization
Length = 304
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 251 PIRPRAFSIASS---PKTHSGELHLLVAIVKYKTKMLAPR-YGLCSNYLAALNPGDSVAI 306
P + R +SIAS+ + L V ++YK YG+CS YL + PG V I
Sbjct: 74 PEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKI 133
Query: 307 SIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
+ G + P + E +IM+ GTGI P R+Y+ + +A + F G
Sbjct: 134 TGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKG 186
>pdb|2B5O|A Chain A, Ferredoxin-nadp Reductase
pdb|2B5O|B Chain B, Ferredoxin-nadp Reductase
Length = 402
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 288 YGLCSNYLAALNPG-DSVAISIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISN 345
YG+CS YL L G D V I+ G + P +E+ ++M+ GTGIAPFR+++
Sbjct: 216 YGVCSTYLCNLPVGTDDVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKE 275
Query: 346 QTASAQ---RLHLFFGCRNQGADFYFNQEWQNAIQANQLTFYVQHVMSR 391
Q + + L FG A+ + +++ N F + + +SR
Sbjct: 276 QHEDYKFKGKAWLIFGVPYT-ANILYKDDFEKMAAENPDNFRLTYAISR 323
>pdb|3LO8|A Chain A, Crystal Structure Of The Oxidized Form Of Ferredoxin:nadp+
Reductase From Maize Root At 1.05 Angstroms
Length = 311
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 287 RYGLCSNYLAALNPGDSVAISIKRGSFVFPKNEERPL--IMVGPGTGIAPFRSYIHTRIS 344
+ G+CSN+L PGD + ++ G + E+ IM+ GTG+APFR Y+ R+
Sbjct: 125 KNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLR-RMF 183
Query: 345 NQTASAQRLH----LFFGCRNQGADFYFNQEWQNAIQANQLTFYVQHVMSR 391
+ R LF G N + Y ++E+ + ++ F +SR
Sbjct: 184 MEDVPNYRFGGLAWLFLGVANSDSLLY-DEEFTSYLKQYPDNFRYDKALSR 233
>pdb|3LVB|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From
Maize Root At 1.7 Angstroms - Test Set Withheld
Length = 311
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 287 RYGLCSNYLAALNPGDSVAISIKRGSFVFPKNEERPL--IMVGPGTGIAPFRSYIHTRIS 344
+ G+CSN+L PGD + ++ G + E+ IM+ GTG+APFR Y+ R+
Sbjct: 125 KNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLR-RMF 183
Query: 345 NQTASAQRLH----LFFGCRNQGADFYFNQEWQNAIQANQLTFYVQHVMSR 391
+ R LF G N + Y ++E+ + ++ F +SR
Sbjct: 184 MEDVPNYRFGGLAWLFLGVANSDSLLY-DEEFTSYLKQYPDNFRYDKALSR 233
>pdb|1JB9|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From
Maize Root At 1.7 Angstroms
Length = 316
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 287 RYGLCSNYLAALNPGDSVAISIKRGSFVFPKNEERPL--IMVGPGTGIAPFRSYIHTRIS 344
+ G+CSN+L PGD + ++ G + E+ IM+ GTG+APFR Y+ R+
Sbjct: 130 KNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLR-RMF 188
Query: 345 NQTASAQRLH----LFFGCRNQGADFYFNQEWQNAIQANQLTFYVQHVMSR 391
+ R LF G N + Y ++E+ + ++ F +SR
Sbjct: 189 MEDVPNYRFGGLAWLFLGVANSDSLLY-DEEFTSYLKQYPDNFRYDKALSR 238
>pdb|1QFJ|A Chain A, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
Escherichia Coli
pdb|1QFJ|B Chain B, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
Escherichia Coli
pdb|1QFJ|C Chain C, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
Escherichia Coli
pdb|1QFJ|D Chain D, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
Escherichia Coli
Length = 232
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 21/149 (14%)
Query: 223 KRTVLEMLTDFPHATRAVP--------VEYLFELFSPIRPRAFSIASSPKTHSG-ELHLL 273
K T +E +TD + R VP +YL + R FS+AS+P ELH+
Sbjct: 6 KVTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDERDKRPFSMASTPDEKGFIELHIG 65
Query: 274 VAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFVFPKNEERPLIMVGPGTGIA 333
+ + K + R + + + I G +EERP+I++ GTG +
Sbjct: 66 ASEINLYAKAVMDR----------ILKDHQIVVDIPHGEAWLRDDEERPMILIAGGTGFS 115
Query: 334 PFRSYIHTRISNQTASAQRLHLFFGCRNQ 362
RS + T ++ + + +++G R +
Sbjct: 116 YARSILLTALARN--PNRDITIYWGGREE 142
>pdb|2RC5|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|B Chain B, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|C Chain C, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|D Chain D, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC6|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|B Chain B, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|C Chain C, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|D Chain D, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
Length = 314
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 289 GLCSNYLAALNPGDSVAISIKRG-SFVFPKNEERPLIM-VGPGTGIAPF 335
G+CSNY+ L PGD V ++ G F+ P + IM + GTGIAPF
Sbjct: 132 GVCSNYMCDLKPGDEVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPF 180
>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase
pdb|1KRH|B Chain B, X-Ray Stucture Of Benzoate Dioxygenase Reductase
Length = 338
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 289 GLCSNYLAA-LNPGDSVAISIKRGSFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQT 347
G S YL+ GD ++ + GSF + ++ +RP++M+ GTGIAPF S + ++ Q
Sbjct: 179 GKMSEYLSVQAKAGDKMSFTGPFGSF-YLRDVKRPVLMLAGGTGIAPFLSML--QVLEQK 235
Query: 348 ASAQRLHLFFG 358
S + L FG
Sbjct: 236 GSEHPVRLVFG 246
>pdb|2R6H|A Chain A, Crystal Structure Of The Domain Comprising The Nad Binding
And The Fad Binding Regions Of The Nadh:ubiquinone
Oxidoreductase, Na Translocating, F Subunit From
Porphyromonas Gingivalis
pdb|2R6H|B Chain B, Crystal Structure Of The Domain Comprising The Nad Binding
And The Fad Binding Regions Of The Nadh:ubiquinone
Oxidoreductase, Na Translocating, F Subunit From
Porphyromonas Gingivalis
pdb|2R6H|C Chain C, Crystal Structure Of The Domain Comprising The Nad Binding
And The Fad Binding Regions Of The Nadh:ubiquinone
Oxidoreductase, Na Translocating, F Subunit From
Porphyromonas Gingivalis
pdb|2R6H|D Chain D, Crystal Structure Of The Domain Comprising The Nad Binding
And The Fad Binding Regions Of The Nadh:ubiquinone
Oxidoreductase, Na Translocating, F Subunit From
Porphyromonas Gingivalis
Length = 290
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 289 GLCSNYLAALNPGDSVAISIKRGSFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTA 348
G+ S+Y+ +L PGD V S G F ++ + + +G G G AP R+ I +
Sbjct: 126 GISSSYIFSLKPGDKVXXSGPYGDFHI-QDTDAEXLYIGGGAGXAPLRAQI-LHLFRTLK 183
Query: 349 SAQRLHLFFGCRNQGADFY 367
+ +++ ++G R++ FY
Sbjct: 184 TGRKVSYWYGARSKNEIFY 202
>pdb|4EH1|A Chain A, Crystal Structure Of The Flavohem-Like-FadNAD BINDING
DOMAIN OF Nitric Oxide Dioxygenase From Vibrio Cholerae
O1 Biovar El Tor
pdb|4EH1|B Chain B, Crystal Structure Of The Flavohem-Like-FadNAD BINDING
DOMAIN OF Nitric Oxide Dioxygenase From Vibrio Cholerae
O1 Biovar El Tor
Length = 243
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 289 GLCSNYL-AALNPGDSVAISIKRGSFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQT 347
GL S+YL + GDSV + G F F ERP++++ G G P ++ +HT ++ Q
Sbjct: 83 GLVSHYLHNNVKVGDSVKLYAPAGDF-FYVERERPVVLISAGVGATPMQAILHT-LAKQN 140
Query: 348 ASAQRLHLFFGCRNQGADFYFNQE 371
S + + C N + F QE
Sbjct: 141 KSG--VTYLYAC-NSAKEHTFAQE 161
>pdb|2EIX|A Chain A, The Structure Of Physarum Polycephalum Cytochrome B5
Reductase
pdb|2EIX|B Chain B, The Structure Of Physarum Polycephalum Cytochrome B5
Reductase
Length = 243
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 289 GLCSNYLAALNPGDSVAISIKRGSFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISN 345
G S Y+ LNPGD + + +G F + N + + M+ GTGI P I N
Sbjct: 85 GQMSQYIDHLNPGDFLQVRGPKGQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIKN 141
>pdb|1CNE|A Chain A, Structural Studies On Corn Nitrate Reductase: Refined
Structure Of The Cytochrome B Reductase Fragment At 2.5
Angstroms, Its Adp Complex And An Active Site Mutant And
Modeling Of The Cytochrome B Domain
Length = 270
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 268 GELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAIS--------IKRGSFVFPKNE 319
G LLV + P GL + YL +L G + + RGSFV +
Sbjct: 74 GHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQ 133
Query: 320 E--RPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQ 362
R L M+ G+GI P I + +Q +HL + R +
Sbjct: 134 RNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTE 178
>pdb|1CNF|A Chain A, Structural Studies On Corn Nitrate Reductase: Refined
Structure Of The Cytochrome B Reductase Fragment At 2.5
Angstroms, Its Adp Complex And An Active Site Mutant And
Modeling Of The Cytochrome B Domain
pdb|2CND|A Chain A, Structural Studies On Corn Nitrate Reductase: Refined
Structure Of The Cytochrome B Reductase Fragment At 2.5
Angstroms, Its Adp Complex And An Active Site Mutant And
Modeling Of The Cytochrome B Domain
Length = 270
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 268 GELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAIS--------IKRGSFVFPKNE 319
G LLV + P GL + YL +L G + + RGSFV +
Sbjct: 74 GHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQ 133
Query: 320 E--RPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQ 362
R L M+ G+GI P I + +Q +HL + R +
Sbjct: 134 RNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTE 178
>pdb|2XNJ|A Chain A, Crystal Structure Of An Engineered Ferredoxin(Flavodoxin)
Nadp(H) Reductase (Fpr) From Escherichia Coli
pdb|2XNJ|B Chain B, Crystal Structure Of An Engineered Ferredoxin(Flavodoxin)
Nadp(H) Reductase (Fpr) From Escherichia Coli
Length = 266
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 13/142 (9%)
Query: 255 RAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSV-AISIKRGSF 313
RA+S +SP E +L+ + Y G S LAAL PGD V +S G F
Sbjct: 60 RAYSYVNSPDNPDLEFYLVTVV--YTNDAGEVVKGKLSPRLAALKPGDEVQVVSEAAGFF 117
Query: 314 VFPKNEERP----LIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFN 369
V +E P L M+ GT I P+ S + R+ + L L R AD +
Sbjct: 118 VL---DEVPHCETLWMLATGTAIGPYLSIL--RLGKDLDRFKNLVLVHAAR-YAADLSYL 171
Query: 370 QEWQNAIQANQLTFYVQHVMSR 391
Q + + +Q V+SR
Sbjct: 172 PLMQELEKRYEGKLRIQTVVSR 193
>pdb|1FDR|A Chain A, Flavodoxin Reductase From E. Coli
Length = 248
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 59/142 (41%), Gaps = 22/142 (15%)
Query: 255 RAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSV-AISIKRGSF 313
RA+S +SP E +L V L+PR LAAL PGD V +S G F
Sbjct: 50 RAYSYVNSPDNPDLEFYL----VTVPDGKLSPR-------LAALKPGDEVQVVSEAAGFF 98
Query: 314 VFPKNEERP----LIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFN 369
V +E P L M+ GT I P+ S + R+ + L L R AD +
Sbjct: 99 VL---DEVPHCETLWMLATGTAIGPYLSIL--RLGKDLDRFKNLVLVHAAR-YAADLSYL 152
Query: 370 QEWQNAIQANQLTFYVQHVMSR 391
Q + + +Q V+SR
Sbjct: 153 PLMQELEKRYEGKLRIQTVVSR 174
>pdb|3FPK|A Chain A, Crystal Structure Of Ferredoxin-Nadp Reductase From
Salmonella Typhimurium
pdb|3FPK|B Chain B, Crystal Structure Of Ferredoxin-Nadp Reductase From
Salmonella Typhimurium
Length = 251
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 19/91 (20%)
Query: 255 RAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSV-AISIKRGSF 313
RA+S ++P + E +L V L+PR LAAL PGD V +S G F
Sbjct: 53 RAYSYVNAPDNPNLEFYL----VTVPQGKLSPR-------LAALKPGDEVQVVSDASGFF 101
Query: 314 VFPKNEERP----LIMVGPGTGIAPFRSYIH 340
V +E P L M+ GT I P+ S +
Sbjct: 102 VL---DEVPDCETLWMLATGTAIGPYLSILQ 129
>pdb|4G1B|A Chain A, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|B Chain B, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|C Chain C, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|D Chain D, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1V|A Chain A, X-Ray Structure Of Yeast Flavohemoglobin
Length = 399
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 29/147 (19%)
Query: 213 TDLLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRP-------RAFSIASSPKT 265
+D++ + +PK L P P +Y+ PIR R +S+ S+ T
Sbjct: 162 SDIVEFTVKPKFGSGIELESLP----ITPGQYITVNTHPIRQENQYDALRHYSLCSA-ST 216
Query: 266 HSGELHLLVAIVKYKTKMLAPR----YGLCSNYL-AALNPGDSVAISIKRGSFVFPK--- 317
+G +++ KM A R GL S YL GD + +S G F K
Sbjct: 217 KNG--------LRFAVKMEAARENFPAGLVSEYLHKDAKVGDEIKLSAPAGDFAINKELI 268
Query: 318 -NEERPLIMVGPGTGIAPFRSYIHTRI 343
E PL+++ G G+ P + + ++
Sbjct: 269 HQNEVPLVLLSSGVGVTPLLAMLEEQV 295
>pdb|3OZU|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Miconazole
pdb|3OZV|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZV|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZW|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
pdb|3OZW|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
Length = 403
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 289 GLCSNYLAA-LNPGDSVAISIKRGSFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQT 347
G SN L +N GD V ++ GSF + + P++++ G G+ P S + +
Sbjct: 234 GYVSNLLHDHVNVGDQVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ--- 290
Query: 348 ASAQRLHLFFGCRN 361
A +++ G RN
Sbjct: 291 APPRQVVFVHGARN 304
>pdb|1CQX|A Chain A, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
pdb|1CQX|B Chain B, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
Length = 403
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 289 GLCSNYLAA-LNPGDSVAISIKRGSFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQT 347
G SN L +N GD V ++ GSF + + P++++ G G+ P S + +
Sbjct: 234 GYVSNLLHDHVNVGDQVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ--- 290
Query: 348 ASAQRLHLFFGCRN 361
A +++ G RN
Sbjct: 291 APPRQVVFVHGARN 304
>pdb|1CGL|A Chain A, Structure Of The Catalytic Domain Of Fibroblast
Collagenase Complexed With An Inhibitor
pdb|1CGL|B Chain B, Structure Of The Catalytic Domain Of Fibroblast
Collagenase Complexed With An Inhibitor
Length = 169
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 232 DFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLC 291
D P A +E F+L+S + P F+ K G+ ++++ V+ + +P G
Sbjct: 24 DLPRADVDHAIEKAFQLWSDVTPLTFT-----KVSEGQADIMISFVRGDHRDNSPFDGPG 78
Query: 292 SNYLAALNPGDSVA 305
N A +PG +
Sbjct: 79 GNLAHAFDPGPGIG 92
>pdb|2J0T|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
Length = 170
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 232 DFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLC 291
D P A +E F+L+S + P F+ K G+ ++++ V+ + +P G
Sbjct: 25 DLPRADVDHAIEKAFQLWSNVTPLTFT-----KVSEGQADIMISFVRGDHRDNSPFDGPG 79
Query: 292 SNYLAALNPGDSVA 305
N A PG +
Sbjct: 80 GNLAHAFQPGPGIG 93
>pdb|1CGE|A Chain A, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
Length = 168
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 232 DFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLC 291
D P A +E F+L+S + P F+ K G+ ++++ V+ + +P G
Sbjct: 23 DLPRADVDHAIEKAFQLWSNVTPLTFT-----KVSEGQADIMISFVRGDHRDNSPFDGPG 77
Query: 292 SNYLAALNPGDSVA 305
N A PG +
Sbjct: 78 GNLAHAFQPGPGIG 91
>pdb|3AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase
Complexed With Cgs-27023a, Nmr, Minimized Average
Structure
pdb|4AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase
Complexed With Cgs-27023a, Nmr, 30 Structures
pdb|1AYK|A Chain A, Inhibitor-Free Catalytic Fragment Of Human Fibroblast
Collagenase, Nmr, 30 Structures
pdb|1HFC|A Chain A, 1.56 Angstrom Structure Of Mature Truncated Human
Fibroblast Collagenase
pdb|2AYK|A Chain A, Inhibitor-Free Catalytic Fragment Of Human Fibroblast
Collagenase, Nmr, Minimized Average Structure
pdb|2TCL|A Chain A, Structure Of The Catalytic Domain Of Human Fibroblast
Collagenase Complexed With An Inhibitor
Length = 169
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 232 DFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLC 291
D P A +E F+L+S + P F+ K G+ ++++ V+ + +P G
Sbjct: 24 DLPRADVDHAIEKAFQLWSNVTPLTFT-----KVSEGQADIMISFVRGDHRDNSPFDGPG 78
Query: 292 SNYLAALNPGDSVA 305
N A PG +
Sbjct: 79 GNLAHAFQPGPGIG 92
>pdb|1SU3|A Chain A, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
pdb|1SU3|B Chain B, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
Length = 450
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 232 DFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLC 291
D P A +E F+L+S + P F+ K G+ ++++ V+ + +P G
Sbjct: 105 DLPRADVDHAIEKAFQLWSNVTPLTFT-----KVSEGQADIMISFVRGDHRDNSPFDGPG 159
Query: 292 SNYLAALNPGDSVA 305
N A PG +
Sbjct: 160 GNLAHAFQPGPGIG 173
>pdb|2CLT|A Chain A, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|2CLT|B Chain B, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|4AUO|A Chain A, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
pdb|4AUO|B Chain B, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
Length = 367
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 232 DFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLC 291
D P A +E F+L+S + P F+ K G+ ++++ V+ + +P G
Sbjct: 25 DLPRADVDHAIEKAFQLWSNVTPLTFT-----KVSEGQADIMISFVRGDHRDNSPFDGPG 79
Query: 292 SNYLAALNPGDSVA 305
N A PG +
Sbjct: 80 GNLAHAFQPGPGIG 93
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 92 PALADVRHIKLKLPATLQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLTPSSRLRVVQ 151
P L+ + H+ + A++ GD +++ + S KC+E L + K L+P+ ++ +V+
Sbjct: 249 PPLSGIEHVGGDMFASV--PQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE 306
>pdb|2YV3|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Thermus Thermophilus Hb8
pdb|2YV3|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Thermus Thermophilus Hb8
Length = 331
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 417 PTAVREVLVETITLELQDEEEAKQYATVLIAGNANDM 453
P A REVL E +E+ DE EAK+Y L A D+
Sbjct: 252 PEAAREVLKEAPGVEVVDEPEAKRYPMPLTASGKWDV 288
>pdb|3L9C|A Chain A, The Crystal Structure Of Smu.777 From Streptococcus Mutans
Ua159
pdb|3L9C|B Chain B, The Crystal Structure Of Smu.777 From Streptococcus Mutans
Ua159
Length = 259
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 12/118 (10%)
Query: 212 QTDLLNYAHRPKRTVLEMLTDFP------HATRAVPVEYLFELFS---PIRPRAFSIASS 262
Q D +++ + R VLE + DF H P E L E+FS + PR IA
Sbjct: 123 QPDYIDFEYFSYRDVLEEMYDFSNLILSYHNFEETP-ENLMEVFSELTALAPRVVKIAVM 181
Query: 263 PKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFVFPKNEE 320
PK L L+ +KT L P + ++ L +A + S+ F E+
Sbjct: 182 PKNEQDVLDLMNYTRGFKT--LNPNQEYVTMSMSKLGRISRLAADLIGSSWTFASLEQ 237
>pdb|1PIO|A Chain A, An Engineered Staphylococcus Aureus Pc1 Beta-Lactamase
That Hydrolyses Third Generation Cephalosporins
pdb|1PIO|B Chain B, An Engineered Staphylococcus Aureus Pc1 Beta-Lactamase
That Hydrolyses Third Generation Cephalosporins
Length = 257
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Query: 241 PVEYLFEL--FSPIR------PRAFS------IASSPKTHSGELHLLVAIVKYKTKMLAP 286
PV Y EL +SP P AF IA+ + + LL ++ K+
Sbjct: 130 PVRYEIELNYYSPKSKKDTSTPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDTLI 189
Query: 287 RYGLCSNYLAALNPGDSVAISIKRGSFVFPKNEERPLIMV 326
+ G+ +Y A G S S +FV+PK + P+++V
Sbjct: 190 KDGVPKDYKVADKSGQSTYASRNDVAFVYPKGQSEPIVLV 229
>pdb|3L6A|A Chain A, Crystal Structure Of The C-Terminal Region Of Human P97
Length = 364
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 14/56 (25%)
Query: 445 LIAGNANDMPTAVREV----------LVKVITLEL----QDEEKAKQYVEQMEREG 486
L +GNAN+ VRE+ L KVI L L +D+EKA + +++EG
Sbjct: 23 LNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEG 78
>pdb|1CGF|A Chain A, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
pdb|1CGF|B Chain B, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
Length = 162
Score = 29.3 bits (64), Expect = 5.9, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 232 DFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLC 291
D P A +E F+L+S + P F+ K G+ ++++ V+ + +P G
Sbjct: 23 DLPRADVDHAIEKAFQLWSNVTPLTFT-----KVSEGQADIMISFVRGDHRDNSPFDGPG 77
Query: 292 SNYLAALNPGDSVA 305
N A PG +
Sbjct: 78 GNLAHAFQPGPGIG 91
>pdb|3SHI|A Chain A, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
pdb|3SHI|G Chain G, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
pdb|3SHI|M Chain M, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
Length = 156
Score = 29.3 bits (64), Expect = 5.9, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 232 DFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLC 291
D P A +E F+L+S + P F+ K G+ ++++ V+ + +P G
Sbjct: 19 DLPRADVDHAIEKAFQLWSNVTPLTFT-----KVSEGQADIMISFVRGDHRDNSPFDGPG 73
Query: 292 SNYLAALNPGDSVA 305
N A PG +
Sbjct: 74 GNLAHAFQPGPGIG 87
>pdb|966C|A Chain A, Crystal Structure Of Fibroblast Collagenase-1 Complexed To
A Diphenyl-Ether Sulphone Based Hydroxamic Acid
Length = 157
Score = 28.9 bits (63), Expect = 6.0, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 232 DFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLC 291
D P A +E F+L+S + P F+ K G+ ++++ V+ + +P G
Sbjct: 17 DLPRADVDHAIEKAFQLWSNVTPLTFT-----KVSEGQADIMISFVRGDHRDNSPFDGPG 71
Query: 292 SNYLAALNPGDSVA 305
N A PG +
Sbjct: 72 GNLAHAFQPGPGIG 85
>pdb|1A8P|A Chain A, Ferredoxin Reductase From Azotobacter Vinelandii
Length = 258
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 19/90 (21%)
Query: 255 RAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIK-RGSF 313
RA+SIAS + E HL +K + L R L L GD + +S K G+
Sbjct: 51 RAYSIASP----NYEEHLEFFSIKVQNGPLTSR-------LQHLKEGDELMVSRKPTGTL 99
Query: 314 V----FPKNEERPLIMVGPGTGIAPFRSYI 339
V P + L M+ GTG+APF S I
Sbjct: 100 VTSDLLPG---KHLYMLSTGTGLAPFMSLI 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,667,771
Number of Sequences: 62578
Number of extensions: 600099
Number of successful extensions: 1520
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1300
Number of HSP's gapped (non-prelim): 120
length of query: 494
length of database: 14,973,337
effective HSP length: 103
effective length of query: 391
effective length of database: 8,527,803
effective search space: 3334370973
effective search space used: 3334370973
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)