Query psy12838
Match_columns 494
No_of_seqs 335 out of 2447
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 21:04:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12838.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12838hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1159|consensus 100.0 4.9E-76 1.1E-80 593.6 28.9 364 80-493 199-574 (574)
2 cd06204 CYPOR NADPH cytochrome 100.0 3.1E-71 6.7E-76 581.4 37.8 371 76-493 4-416 (416)
3 cd06203 methionine_synthase_re 100.0 8.2E-71 1.8E-75 575.5 37.9 363 82-493 2-398 (398)
4 cd06207 CyPoR_like NADPH cytoc 100.0 2.5E-70 5.3E-75 569.7 37.3 364 82-493 2-382 (382)
5 cd06202 Nitric_oxide_synthase 100.0 4.4E-70 9.5E-75 571.1 38.4 368 81-494 1-403 (406)
6 KOG1158|consensus 100.0 2.1E-70 4.6E-75 585.4 31.2 374 76-493 244-645 (645)
7 cd06206 bifunctional_CYPOR The 100.0 2E-68 4.3E-73 555.7 37.7 360 82-493 2-384 (384)
8 COG0369 CysJ Sulfite reductase 100.0 4.2E-67 9.1E-72 561.2 32.4 351 77-493 221-587 (587)
9 PRK10953 cysJ sulfite reductas 100.0 1.9E-64 4.1E-69 548.2 36.7 349 76-493 236-600 (600)
10 cd06199 SiR Cytochrome p450- l 100.0 4E-64 8.8E-69 518.7 33.4 343 82-493 2-360 (360)
11 TIGR01931 cysJ sulfite reducta 100.0 2E-63 4.3E-68 542.6 36.2 349 76-493 233-597 (597)
12 PRK06214 sulfite reductase; Pr 100.0 4.6E-63 9.9E-68 527.4 34.6 348 76-493 167-530 (530)
13 PF00667 FAD_binding_1: FAD bi 100.0 1.4E-42 3E-47 334.8 18.8 212 76-294 7-219 (219)
14 PLN03115 ferredoxin--NADP(+) r 100.0 1.5E-35 3.2E-40 304.2 19.1 199 253-493 144-367 (367)
15 cd06182 CYPOR_like NADPH cytoc 100.0 3E-34 6.4E-39 284.8 22.8 231 224-493 15-267 (267)
16 cd06208 CYPOR_like_FNR These f 100.0 5.5E-32 1.2E-36 271.4 21.6 198 253-493 63-286 (286)
17 PLN03116 ferredoxin--NADP+ red 100.0 8.9E-32 1.9E-36 272.4 20.3 225 226-493 44-307 (307)
18 TIGR03224 benzo_boxA benzoyl-C 100.0 9.5E-32 2.1E-36 281.8 19.2 226 225-493 161-411 (411)
19 cd06200 SiR_like1 Cytochrome p 100.0 1.8E-31 3.8E-36 261.9 18.8 197 240-493 33-245 (245)
20 cd06201 SiR_like2 Cytochrome p 100.0 9.4E-30 2E-34 255.5 17.8 190 241-493 86-289 (289)
21 cd00322 FNR_like Ferredoxin re 99.9 3.7E-24 8E-29 205.8 14.4 174 240-427 24-213 (223)
22 cd06190 T4MO_e_transfer_like T 99.9 1.1E-23 2.5E-28 204.5 16.9 177 239-427 24-218 (232)
23 cd06189 flavin_oxioreductase N 99.9 1.6E-23 3.6E-28 202.4 16.7 189 225-427 12-212 (224)
24 PRK05713 hypothetical protein; 99.9 1E-23 2.3E-28 214.0 15.8 172 240-427 120-296 (312)
25 cd06211 phenol_2-monooxygenase 99.9 1.9E-23 4.1E-28 203.9 17.0 174 240-427 37-226 (238)
26 PRK10926 ferredoxin-NADP reduc 99.9 7.6E-24 1.6E-28 208.2 13.6 174 240-428 32-229 (248)
27 PRK08051 fre FMN reductase; Va 99.9 1.6E-23 3.6E-28 203.7 15.2 175 239-427 30-217 (232)
28 PRK13289 bifunctional nitric o 99.9 2E-23 4.3E-28 219.0 16.7 173 240-427 186-380 (399)
29 PRK10684 HCP oxidoreductase, N 99.9 2E-23 4.4E-28 213.8 16.2 174 240-427 38-225 (332)
30 cd06195 FNR1 Ferredoxin-NADP+ 99.9 2E-23 4.2E-28 204.1 15.2 174 239-429 25-225 (241)
31 cd06194 FNR_N-term_Iron_sulfur 99.9 5.3E-23 1.2E-27 198.4 17.6 189 225-427 10-209 (222)
32 cd06213 oxygenase_e_transfer_s 99.9 4E-23 8.6E-28 200.2 16.4 172 240-427 29-215 (227)
33 cd06188 NADH_quinone_reductase 99.9 3.3E-23 7.2E-28 207.5 16.2 170 254-428 86-272 (283)
34 cd06198 FNR_like_3 NAD(P) bind 99.9 3.8E-23 8.2E-28 198.7 15.4 171 240-427 24-203 (216)
35 cd06196 FNR_like_1 Ferredoxin 99.9 2.2E-23 4.8E-28 200.5 13.9 182 225-427 14-208 (218)
36 cd06210 MMO_FAD_NAD_binding Me 99.9 4.5E-23 9.7E-28 200.8 16.1 174 240-427 36-223 (236)
37 PRK07609 CDP-6-deoxy-delta-3,4 99.9 3.5E-23 7.6E-28 212.5 15.9 190 224-427 115-320 (339)
38 PRK11872 antC anthranilate dio 99.9 5.1E-23 1.1E-27 211.4 15.9 173 240-427 138-323 (340)
39 cd06187 O2ase_reductase_like T 99.9 1.2E-22 2.6E-27 196.1 17.0 174 240-427 25-212 (224)
40 cd06221 sulfite_reductase_like 99.9 8.3E-23 1.8E-27 201.4 16.1 174 239-427 28-212 (253)
41 cd06209 BenDO_FAD_NAD Benzoate 99.9 4.4E-23 9.6E-28 199.9 13.6 172 240-427 32-215 (228)
42 cd06184 flavohem_like_fad_nad_ 99.9 1.3E-22 2.9E-27 198.9 15.5 173 240-427 38-231 (247)
43 PRK08345 cytochrome-c3 hydroge 99.9 8.6E-23 1.9E-27 205.1 14.0 173 240-427 39-234 (289)
44 PRK05464 Na(+)-translocating N 99.9 1.5E-22 3.2E-27 212.9 16.2 171 252-427 208-395 (409)
45 PRK08221 anaerobic sulfite red 99.9 6.6E-23 1.4E-27 203.2 12.8 171 240-427 34-214 (263)
46 TIGR01941 nqrF NADH:ubiquinone 99.9 7E-23 1.5E-27 215.1 13.6 171 252-427 204-391 (405)
47 cd06215 FNR_iron_sulfur_bindin 99.9 2.1E-22 4.5E-27 195.3 15.8 174 240-427 29-219 (231)
48 cd06218 DHOD_e_trans FAD/NAD b 99.9 6.9E-23 1.5E-27 201.2 12.5 168 240-428 26-203 (246)
49 COG1018 Hmp Flavodoxin reducta 99.9 9.8E-23 2.1E-27 201.3 13.6 172 240-427 36-218 (266)
50 cd06212 monooxygenase_like The 99.9 3.2E-22 7E-27 194.4 17.0 174 240-427 31-219 (232)
51 cd06191 FNR_iron_sulfur_bindin 99.9 1.6E-22 3.5E-27 196.4 13.9 173 240-427 29-219 (231)
52 TIGR02911 sulfite_red_B sulfit 99.9 1.1E-22 2.5E-27 201.3 13.0 171 240-427 32-212 (261)
53 cd06185 PDR_like Phthalate dio 99.9 4.5E-22 9.7E-27 190.4 15.9 169 240-427 27-198 (211)
54 cd06183 cyt_b5_reduct_like Cyt 99.9 3.7E-22 8.1E-27 193.7 14.0 175 240-427 30-224 (234)
55 cd06217 FNR_iron_sulfur_bindin 99.9 5.7E-22 1.2E-26 192.7 15.2 174 240-427 32-223 (235)
56 cd06216 FNR_iron_sulfur_bindin 99.9 1E-21 2.3E-26 192.2 16.5 174 240-427 47-232 (243)
57 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 3.6E-22 7.7E-27 206.1 13.3 173 240-427 34-229 (352)
58 cd06214 PA_degradation_oxidore 99.9 9.7E-22 2.1E-26 191.9 15.5 173 240-427 34-228 (241)
59 cd06197 FNR_like_2 FAD/NAD(P) 99.9 5.9E-22 1.3E-26 191.4 12.2 144 253-427 59-212 (220)
60 PTZ00274 cytochrome b5 reducta 99.9 1.3E-21 2.8E-26 198.9 15.0 159 253-423 102-281 (325)
61 PTZ00319 NADH-cytochrome B5 re 99.9 4.5E-21 9.9E-26 193.5 16.3 171 253-427 85-290 (300)
62 COG0543 UbiB 2-polyprenylpheno 99.9 4.7E-21 1E-25 188.7 15.9 174 239-428 36-215 (252)
63 PRK00054 dihydroorotate dehydr 99.9 4.7E-21 1E-25 188.6 14.1 162 240-427 33-203 (250)
64 cd06192 DHOD_e_trans_like FAD/ 99.9 6E-21 1.3E-25 186.9 14.6 167 240-427 26-200 (243)
65 cd06220 DHOD_e_trans_like2 FAD 99.9 4.4E-21 9.5E-26 186.8 13.1 160 240-427 25-189 (233)
66 PRK05802 hypothetical protein; 99.9 2.1E-21 4.5E-26 197.3 11.0 170 240-427 96-276 (320)
67 PRK06222 ferredoxin-NADP(+) re 99.8 3.9E-21 8.3E-26 192.4 12.4 167 240-427 29-203 (281)
68 COG4097 Predicted ferric reduc 99.8 8.6E-21 1.9E-25 188.1 13.3 170 240-427 244-423 (438)
69 KOG0534|consensus 99.8 2.6E-20 5.6E-25 183.4 16.5 163 251-426 97-275 (286)
70 cd06219 DHOD_e_trans_like1 FAD 99.8 1.6E-20 3.5E-25 184.6 12.5 167 240-427 28-202 (248)
71 cd06186 NOX_Duox_like_FAD_NADP 99.8 1.2E-19 2.7E-24 173.4 10.5 158 239-426 25-197 (210)
72 PLN02252 nitrate reductase [NA 99.8 5.9E-19 1.3E-23 199.3 16.0 171 253-427 682-878 (888)
73 cd06193 siderophore_interactin 99.8 2.4E-18 5.2E-23 167.8 11.5 153 252-427 62-220 (235)
74 COG2871 NqrF Na+-transporting 99.8 3.4E-18 7.4E-23 163.9 11.3 171 254-429 211-398 (410)
75 PRK12778 putative bifunctional 99.7 3.3E-18 7.1E-23 193.1 11.6 167 240-427 29-203 (752)
76 PTZ00306 NADH-dependent fumara 99.7 1.7E-17 3.7E-22 194.3 16.1 162 253-427 965-1151(1167)
77 PRK12779 putative bifunctional 99.7 2.4E-16 5.3E-21 180.2 13.7 170 240-427 678-869 (944)
78 PRK12775 putative trifunctiona 99.7 2.3E-16 5.1E-21 181.8 11.7 166 240-426 29-202 (1006)
79 PF00175 NAD_binding_1: Oxidor 99.6 1.2E-15 2.7E-20 130.1 5.1 94 325-422 1-109 (109)
80 PLN02292 ferric-chelate reduct 99.5 2.7E-13 5.9E-18 149.4 14.4 164 239-414 352-547 (702)
81 PLN02631 ferric-chelate reduct 99.5 2E-13 4.4E-18 150.1 10.8 137 239-387 335-489 (699)
82 PLN02844 oxidoreductase/ferric 99.5 4.9E-13 1.1E-17 147.8 13.4 163 240-415 340-537 (722)
83 KOG3378|consensus 99.2 5.1E-12 1.1E-16 121.0 4.6 159 254-429 201-370 (385)
84 KOG0039|consensus 99.0 3.1E-09 6.8E-14 117.6 13.4 138 226-376 369-536 (646)
85 PRK06567 putative bifunctional 98.7 4.6E-08 9.9E-13 110.7 11.5 107 224-347 803-917 (1028)
86 PF08030 NAD_binding_6: Ferric 98.6 1.2E-07 2.5E-12 86.2 7.4 55 322-376 3-60 (156)
87 PF00970 FAD_binding_6: Oxidor 98.5 1.8E-07 3.9E-12 78.4 4.6 66 240-315 31-99 (99)
88 COG2375 ViuB Siderophore-inter 97.3 0.0042 9.1E-08 61.1 12.5 150 252-426 85-242 (265)
89 PF08022 FAD_binding_8: FAD-bi 94.9 0.0039 8.3E-08 53.0 -1.6 60 240-312 31-103 (105)
90 PF08021 FAD_binding_9: Sidero 93.9 0.041 8.9E-07 47.8 2.6 53 252-313 65-117 (117)
91 PLN03115 ferredoxin--NADP(+) r 79.7 3.2 6.9E-05 43.4 5.5 46 76-121 89-134 (367)
92 cd06182 CYPOR_like NADPH cytoc 75.0 3.8 8.1E-05 40.7 4.3 41 82-122 2-44 (267)
93 TIGR03224 benzo_boxA benzoyl-C 53.5 26 0.00057 37.1 5.9 46 77-122 142-188 (411)
94 PRK02290 3-dehydroquinate synt 43.5 31 0.00067 35.5 4.2 64 249-329 217-285 (344)
95 COG1465 Predicted alternative 39.0 40 0.00086 33.9 4.1 52 268-330 262-318 (376)
96 cd06208 CYPOR_like_FNR These f 39.0 65 0.0014 32.1 5.9 45 77-121 8-52 (286)
97 PLN03116 ferredoxin--NADP+ red 38.6 62 0.0013 32.7 5.7 46 77-122 24-69 (307)
98 PF01959 DHQS: 3-dehydroquinat 38.5 35 0.00076 35.3 3.8 65 249-330 227-296 (354)
99 TIGR00696 wecB_tagA_cpsF bacte 31.3 1.3E+02 0.0028 28.0 6.0 23 403-429 47-69 (177)
100 cd00150 PlantTI Plant trypsin 28.2 27 0.00058 21.9 0.6 14 11-24 2-15 (27)
101 smart00286 PTI Plant trypsin i 27.0 32 0.0007 21.9 0.8 15 10-24 3-17 (29)
102 KOG3846|consensus 26.7 85 0.0018 32.0 4.1 40 399-448 61-101 (465)
103 PF04954 SIP: Siderophore-inte 26.4 2.4E+02 0.0053 24.0 6.6 93 322-427 3-102 (119)
104 PRK12446 undecaprenyldiphospho 25.9 87 0.0019 32.3 4.3 25 322-346 3-29 (352)
105 PF11132 SplA: Transcriptional 23.8 49 0.0011 26.0 1.5 16 109-124 5-20 (75)
106 cd06201 SiR_like2 Cytochrome p 23.6 1.5E+02 0.0032 29.6 5.4 41 81-122 49-96 (289)
107 PF00299 Squash: Squash family 21.9 22 0.00047 22.7 -0.6 14 11-24 4-17 (29)
108 PF14207 DpnD-PcfM: DpnD/PcfM- 21.8 38 0.00081 24.5 0.5 34 458-491 7-40 (48)
109 PF03808 Glyco_tran_WecB: Glyc 21.7 2.2E+02 0.0047 26.1 5.7 12 402-413 46-57 (172)
110 PF00970 FAD_binding_6: Oxidor 21.1 2E+02 0.0044 23.1 4.9 36 81-121 3-41 (99)
No 1
>KOG1159|consensus
Probab=100.00 E-value=4.9e-76 Score=593.65 Aligned_cols=364 Identities=42% Similarity=0.758 Sum_probs=337.5
Q ss_pred EEEeeeeeeccCCCCCeEEEEEEeCCC-CccccCCCeeEEccCCCHHHHHHHHHHhhcCCCCCCCCceEEE--eecCCCC
Q psy12838 80 KEQREEMTVLCEPALADVRHIKLKLPA-TLQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLTPSSRLRV--VQKNQYM 156 (494)
Q Consensus 80 ~~v~~n~~lt~~~~~~~~~~l~l~~~~-~~~y~~Gd~l~v~P~N~~~~V~~~l~~l~~~~~~l~~~~~v~~--~~~~~~~ 156 (494)
++++.|+++|..+|+|++++++|++++ .+.|.|||++.|+|.|+++.|++|++.+ +|++++...+ .....+.
T Consensus 199 ~k~~~N~rlT~~~HfQDVR~~~F~i~~s~~~~epGDvl~l~P~N~de~V~~Fie~~-----gl~~~~~~~l~~~s~~~~~ 273 (574)
T KOG1159|consen 199 AKLVENRRLTSADHFQDVRLFEFDIPDSYEEFEPGDVLSLLPSNSDETVQRFIEYL-----GLDEDQLKPLKISSNDRSS 273 (574)
T ss_pred cchhcceeecCcchhheeeEEEEecCCccccccCCCEEEEecCCchHHHHHHHHHc-----CCChhhccccccccCcccc
Confidence 488999999999999999999999999 8999999999999999999999999999 7777654443 3333344
Q ss_pred CCCccCCCcccHHHHHhhcccccCCCcHHHHHHHHhcCCCHHHHHHHHhhccccchhhhhhhhccCCCCEEeeeccCCCC
Q psy12838 157 PVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDLLNYAHRPKRTVLEMLTDFPHA 236 (494)
Q Consensus 157 ~~p~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~t~~dvl~~fp~~ 236 (494)
+.| .++.|+|++.++++|+||+++|+++||..|++|++|++||++|+++++++|.++|++|+.|++||++|||++|++
T Consensus 274 ~~~-~~~~p~sl~~~lk~~~D~~SvPrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~s- 351 (574)
T KOG1159|consen 274 PLP-LLPNPLSLLNLLKYVLDFNSVPRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRS- 351 (574)
T ss_pred ccc-ccCCchhHHHHHHHhcccccCcchHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchh-
Confidence 455 688999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred ccccChHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCCccCC
Q psy12838 237 TRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFVFP 316 (494)
Q Consensus 237 ~~~~~l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~F~lp 316 (494)
.++|++++++++|.++||.|||||+|... .++|+|++|+|+|.+.+.|.|+||+||+.|++|+.|.+.+.+|++..|
T Consensus 352 -v~lp~~yl~d~~P~IrPR~fSIas~~~~~--~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~~i~~~v~~g~l~~p 428 (574)
T KOG1159|consen 352 -VKLPIDYLLDLLPVIRPRAFSIASSPGAH--HLELLVAIVEYKTILKEPRRGLCSNWLASLKPGDEIPIKVRPGTLYFP 428 (574)
T ss_pred -ccCCHHHHHHhccccccceeeeccCCCCC--ceeEEEEEEEEeeeccccccchhHHHHhhcCCCCeEEEEEecCccccC
Confidence 58999999999999999999999999874 499999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCe---------EEEec
Q psy12838 317 KNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT---------FYVQH 387 (494)
Q Consensus 317 ~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~---------~yVqd 387 (494)
.+.+.|+||||+|||||||||+++++..++. ..+. ||||||+++.||+|.++|.++...+..+ +||||
T Consensus 429 ~~~~~PlImVGPGTGvAPfRa~i~er~~q~~-~~~~--lFfGCR~K~~Df~y~~eW~~~~~~~~~~AFSRDqe~kvYVQh 505 (574)
T KOG1159|consen 429 SDLNKPLIMVGPGTGVAPFRALIQERIYQGD-KENV--LFFGCRNKDKDFLYEDEWTELNKRAFHTAFSRDQEQKVYVQH 505 (574)
T ss_pred CCCCCCeEEEcCCCCcccHHHHHHHHHhhcc-CCce--EEEecccCCccccccchhhhhhcchhhhhcccccccceeHHH
Confidence 9889999999999999999999999998665 4446 9999999999999999999987654333 99999
Q ss_pred ccccChhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHHHHhhhhhchHHHHHHHHHHhhccCCCCcchhhhHHhhhhhc
Q psy12838 388 VMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQDEEEAKQYATVLIAGNANDMPTAVREVLVKVITL 467 (494)
Q Consensus 388 ~l~~~~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (494)
.++++++.+++++.+.|+.|||||++..|+++|+++|.+|+. +.++.
T Consensus 506 ~i~e~g~~v~~Ll~~~gA~~fvaGsS~~MP~~V~~al~eI~~-------------------~e~g~-------------- 552 (574)
T KOG1159|consen 506 KIRENGEEVWDLLDNLGAYFFVAGSSGKMPKDVKEALIEIVG-------------------KEGGF-------------- 552 (574)
T ss_pred HHHHhhHHHHHHHhccCCEEEEecCCCCCcHHHHHHHHHHhh-------------------hhcCC--------------
Confidence 999999999999998899999999999999999999999999 88888
Q ss_pred cccCHHHHHHHHHHHHHcCCeeEeec
Q psy12838 468 ELQDEEKAKQYVEQMEREGRLQTETW 493 (494)
Q Consensus 468 ~~~~~~~a~~~~~~~~~~~r~~~d~w 493 (494)
++|.|. |++.|++.+||+.|+|
T Consensus 553 ---~~e~a~-~l~~lekt~ryq~ETW 574 (574)
T KOG1159|consen 553 ---SKEVAS-YLKALEKTRRYQQETW 574 (574)
T ss_pred ---ChHHHH-HHHHHHHhccccccCC
Confidence 788888 9999999999999999
No 2
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=100.00 E-value=3.1e-71 Score=581.44 Aligned_cols=371 Identities=30% Similarity=0.564 Sum_probs=332.3
Q ss_pred cceEEEEeeeeeeccCCCCCeEEEEEEeCCC-CccccCCCeeEEccCCCHHHHHHHHHHhhcCCCCCC-CCceEEEeecC
Q psy12838 76 FGYVKEQREEMTVLCEPALADVRHIKLKLPA-TLQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLT-PSSRLRVVQKN 153 (494)
Q Consensus 76 fg~~~~v~~n~~lt~~~~~~~~~~l~l~~~~-~~~y~~Gd~l~v~P~N~~~~V~~~l~~l~~~~~~l~-~~~~v~~~~~~ 153 (494)
.+|.+.|++|++||.. +.++++|++|++++ ++.|+|||+|+|+|+|+++.|+++|++| +++ +++.|.+....
T Consensus 4 ~~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l-----~l~~~~~~i~~~~~~ 77 (416)
T cd06204 4 NPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVL-----GLDDRDTVISLKSLD 77 (416)
T ss_pred CCeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHh-----CcCCCCceEEeecCC
Confidence 4578899999999998 99999999999987 8999999999999999999999999999 888 89888886544
Q ss_pred CCCCCCccCCCcccHHHHHhhcccccCCCcHHHHHHHHhcCCCHHHHHHHHhhccccchhhhhhhhccCCCCEEeeeccC
Q psy12838 154 QYMPVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDLLNYAHRPKRTVLEMLTDF 233 (494)
Q Consensus 154 ~~~~~p~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~t~~dvl~~f 233 (494)
+....+.+++.++|++++|++|+||+++|++.||+.||.||+|+.+|++|.+|++ +|.++|.+|+.+++++++|+|.+|
T Consensus 78 ~~~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL~~f 156 (416)
T cd06204 78 EPASKKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVLQDF 156 (416)
T ss_pred cccccCCCCCCCccHHHHHHhhEEeCCCCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHHHhC
Confidence 2222233478899999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCccc---cChHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCC-----------
Q psy12838 234 PHATRA---VPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALN----------- 299 (494)
Q Consensus 234 p~~~~~---~~l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~----------- 299 (494)
|+ +. +|+++|++.+|+++||+|||||+|..+++.++|+|++++|.+..++.+.|+||+||+++.
T Consensus 157 ~s--~~~~~~pl~~ll~~lp~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~ 234 (416)
T cd06204 157 PS--AKPTPPPFDFLIELLPRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTP 234 (416)
T ss_pred cc--cCCCCCCHHHHHHhCccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccc
Confidence 97 45 899999999999999999999999877899999999999988877888999999999766
Q ss_pred ----------CCCeEEEEeeCCCccCCCCCCCCEEEEecCCcchhhHHHHHHHHHc---CCCCCCceEEEEeeecCCccc
Q psy12838 300 ----------PGDSVAISIKRGSFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISN---QTASAQRLHLFFGCRNQGADF 366 (494)
Q Consensus 300 ----------~Gd~v~i~~p~G~F~lp~~~~~piImIa~GtGIAPf~s~l~~~~~~---~~~~~~~i~Lf~G~R~~~~d~ 366 (494)
+|+.|.+.++.|.|.+|.+..+|+||||+|||||||+||++++... +. ..+.++||||||+++.|+
T Consensus 235 ~~~~~~~~~~~g~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~-~~~~v~L~~G~R~~~~d~ 313 (416)
T cd06204 235 YYLSGPRKKGGGSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGK-KVGPTLLFFGCRHPDEDF 313 (416)
T ss_pred cccccccccCCCCeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccC-ccCCEEEEEcCCCCCccc
Confidence 8999999999999999987789999999999999999999997643 22 223468999999986799
Q ss_pred ccHHHHHHHHHcCC-Ce------------EEEecccccChhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHHHHhhhhh
Q psy12838 367 YFNQEWQNAIQANQ-LT------------FYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQ 433 (494)
Q Consensus 367 ly~~el~~~~~~~~-l~------------~yVqd~l~~~~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~ 433 (494)
+|++||+++.+.+. ++ .|||+.+.++.+.+++++.+ ++.||||||+..|+++|+++|.++++
T Consensus 314 ly~~el~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~-~~~vYvCGp~~~M~~~V~~~L~~i~~---- 388 (416)
T cd06204 314 IYKDELEEYAKLGGLLELVTAFSREQPKKVYVQHRLAEHAEQVWELINE-GAYIYVCGDAKNMARDVEKTLLEILA---- 388 (416)
T ss_pred chHHHHHHHHHcCCceEEEEEECcCCCCCcchHHHHHHhHHHHHHHHHc-CCEEEEECCcccchHHHHHHHHHHHH----
Confidence 99999999987543 21 68999998888888887764 79999999954499999999999999
Q ss_pred chHHHHHHHHHHhhccCCCCcchhhhHHhhhhhccccCHHHHHHHHHHHHHcCCeeEeec
Q psy12838 434 DEEEAKQYATVLIAGNANDMPTAVREVLVKVITLELQDEEKAKQYVEQMEREGRLQTETW 493 (494)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~~~d~w 493 (494)
+++++ ++++|++|+++|+++|||++|||
T Consensus 389 ---------------~~~~~-----------------~~~~A~~~l~~l~~~gRy~~dvw 416 (416)
T cd06204 389 ---------------EQGGM-----------------TETEAEEYVKKLKTRGRYQEDVW 416 (416)
T ss_pred ---------------HhCCC-----------------CHHHHHHHHHHHHHcCCeeEecC
Confidence 88899 89999999999999999999999
No 3
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=100.00 E-value=8.2e-71 Score=575.46 Aligned_cols=363 Identities=28% Similarity=0.543 Sum_probs=324.6
Q ss_pred EeeeeeeccCCCCCeEEEEEEeCCC-CccccCCCeeEEccCCCHHHHHHHHHHhhcCCCCCC--CCceEEEeecC----C
Q psy12838 82 QREEMTVLCEPALADVRHIKLKLPA-TLQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLT--PSSRLRVVQKN----Q 154 (494)
Q Consensus 82 v~~n~~lt~~~~~~~~~~l~l~~~~-~~~y~~Gd~l~v~P~N~~~~V~~~l~~l~~~~~~l~--~~~~v~~~~~~----~ 154 (494)
|.+|++||+.++.++++|++|++++ ++.|+|||+|+|+|+|++++|++++++| +++ ++..+.++... .
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l-----~~~~~~~~~~~~~~~~~~~~~ 76 (398)
T cd06203 2 ISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRL-----GLLEQADQPCEVKVVPNTKKK 76 (398)
T ss_pred cccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHh-----CCCCCCCCEEEEEecCCcccc
Confidence 5789999999999999999999975 7999999999999999999999999999 777 78888776311 1
Q ss_pred CCCCCccCCCcccHHHHHhhcccccCCCcHHHHHHHHhcCCCHHHHHHHHhhccccchhhhhhhhccCCCCEEeeeccCC
Q psy12838 155 YMPVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDLLNYAHRPKRTVLEMLTDFP 234 (494)
Q Consensus 155 ~~~~p~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~t~~dvl~~fp 234 (494)
+..+|.++|.++|++++|++|+||+++|+++||+.||+||+|+.+|++|.+|++.+|.++|.+|+.++++|++|||++||
T Consensus 77 ~~~~~~~~p~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~ 156 (398)
T cd06203 77 NAKVPVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFP 156 (398)
T ss_pred ccccCCCCCCCccHHHHHHHhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCC
Confidence 23356668889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccChHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCC-----CCCeEEEEee
Q psy12838 235 HATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALN-----PGDSVAISIK 309 (494)
Q Consensus 235 ~~~~~~~l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~-----~Gd~v~i~~p 309 (494)
+ +++|++.+++.+|+++||+|||||+|..+++.++|+|+++.+.+ .|+||+||++++ +|+.|.+.++
T Consensus 157 s--~~~pl~~ll~~lp~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~G~~v~i~~~ 228 (398)
T cd06203 157 S--CRPPLSLLIEHLPRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSHGVKVPFYLR 228 (398)
T ss_pred C--CCCCHHHHHHhCccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCCCCEEEEEEe
Confidence 6 57899999999999999999999999876799999999997543 599999999987 9999999995
Q ss_pred -CCCccCCCC-CCCCEEEEecCCcchhhHHHHHHHHHcC----CCCCCceEEEEeeecCCcccccHHHHHHHHHcCCC--
Q psy12838 310 -RGSFVFPKN-EERPLIMVGPGTGIAPFRSYIHTRISNQ----TASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQL-- 381 (494)
Q Consensus 310 -~G~F~lp~~-~~~piImIa~GtGIAPf~s~l~~~~~~~----~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l-- 381 (494)
.|.|.+|.+ ..+|+||||+|||||||+||++++.... ....+.++||||||+++.|++|.+||+++.+.+.+
T Consensus 229 ~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~~~ 308 (398)
T cd06203 229 SSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGILTR 308 (398)
T ss_pred cCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCCce
Confidence 578999876 6789999999999999999999987621 11223468999999986799999999999875432
Q ss_pred --------------eEEEecccccChhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHHHHhhhhhchHHHHHHHHHHhh
Q psy12838 382 --------------TFYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQDEEEAKQYATVLIA 447 (494)
Q Consensus 382 --------------~~yVqd~l~~~~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~~~~~~~~~~ 447 (494)
+.||||.+.++.+.+++++...++.||||||++.|+++|+++|.+++.
T Consensus 309 ~~~a~SRd~~~~g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i~~------------------ 370 (398)
T cd06203 309 LIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILS------------------ 370 (398)
T ss_pred EEEEECCCCCCCCCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHHHH------------------
Confidence 379999999999999998866689999999977899999999999999
Q ss_pred ccCCCCcchhhhHHhhhhhccccCHHHHHHHHHHHHHcCCeeEeec
Q psy12838 448 GNANDMPTAVREVLVKVITLELQDEEKAKQYVEQMEREGRLQTETW 493 (494)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~~~d~w 493 (494)
+++++ ++++|++|+++|+++|||++|||
T Consensus 371 -~~~~~-----------------~~~~a~~~~~~l~~~gRy~~dvw 398 (398)
T cd06203 371 -KELGL-----------------DKLEAKKLLARLRKEDRYLEDVW 398 (398)
T ss_pred -HcCCC-----------------CHHHHHHHHHHHHHcCCeeeecC
Confidence 88999 89999999999999999999999
No 4
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=100.00 E-value=2.5e-70 Score=569.70 Aligned_cols=364 Identities=34% Similarity=0.581 Sum_probs=326.8
Q ss_pred EeeeeeeccCCCCCeEEEEEEeCCC-CccccCCCeeEEccCCCHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCCCCCc
Q psy12838 82 QREEMTVLCEPALADVRHIKLKLPA-TLQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLTPSSRLRVVQKNQYMPVPY 160 (494)
Q Consensus 82 v~~n~~lt~~~~~~~~~~l~l~~~~-~~~y~~Gd~l~v~P~N~~~~V~~~l~~l~~~~~~l~~~~~v~~~~~~~~~~~p~ 160 (494)
|++|++||+.++.++++|++|++++ ++.|+|||+|+|+|+|+++.|+++|++| ++++++.++++... +.+.+.
T Consensus 2 v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l-----~l~~~~~~~~~~~~-~~~~~~ 75 (382)
T cd06207 2 VTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARL-----GLDGDDVVRVEPNE-QQRGKP 75 (382)
T ss_pred cceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHh-----CCCCCCeEEEeccc-ccccCC
Confidence 5688999999999999999999975 8999999999999999999999999999 89999988887533 122233
Q ss_pred cCCCcccHHHHHhhcccccCCCcHHHHHHHHhcCCCHHHHHHHHhhccccchhhhhhhhccCCCCEEeeeccCCCCcccc
Q psy12838 161 ALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDLLNYAHRPKRTVLEMLTDFPHATRAV 240 (494)
Q Consensus 161 ~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~t~~dvl~~fp~~~~~~ 240 (494)
+++.|+|++++|++|+||+++|++.+|+.||.|++|+.+|++|.++++.++.++|.+| ++++++|+|.+||+ +++
T Consensus 76 ~~~~~~t~~~ll~~~~dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~--~~~ 150 (382)
T cd06207 76 PFPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPS--VRP 150 (382)
T ss_pred CCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCc--CCC
Confidence 4788999999999999999999999999999999999999999999999998888888 68999999999996 579
Q ss_pred ChHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCCccCCCCCC
Q psy12838 241 PVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFVFPKNEE 320 (494)
Q Consensus 241 ~l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~F~lp~~~~ 320 (494)
|++.+++.+|+++||+|||||+|..+++.++|+|+++.|.+..++.+.|+||+||.++++|+.|.+.+|.|.|++|.+..
T Consensus 151 ~~~~ll~~lp~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~p~g~F~lp~~~~ 230 (382)
T cd06207 151 TLEQLLELCPLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQRVTVFIKKSSFKLPKDPK 230 (382)
T ss_pred CHHHHHHhCcCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCCEEEEEEECCcccCCCCCC
Confidence 99999999999999999999999876789999999999988777778999999999999999999999999999998778
Q ss_pred CCEEEEecCCcchhhHHHHHHHHHc---CCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCC-------------eEE
Q psy12838 321 RPLIMVGPGTGIAPFRSYIHTRISN---QTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQL-------------TFY 384 (494)
Q Consensus 321 ~piImIa~GtGIAPf~s~l~~~~~~---~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l-------------~~y 384 (494)
+|+||||+|||||||+||++++... +. ..+.++||||||+++.|++|++||+++.+.+.. +.|
T Consensus 231 ~plImIa~GtGIAP~rs~l~~~~~~~~~~~-~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~~~~~y 309 (382)
T cd06207 231 KPIIMVGPGTGLAPFRAFLQERAALLAQGP-EIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQPKKVY 309 (382)
T ss_pred CCEEEEcCCccHHHHHHHHHHHHHHhhcCc-cCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCCCCceE
Confidence 9999999999999999999998753 22 223468999999987799999999999876542 269
Q ss_pred EecccccChhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHHHHhhhhhchHHHHHHHHHHhhccCCCCcchhhhHHhhh
Q psy12838 385 VQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQDEEEAKQYATVLIAGNANDMPTAVREVLVKV 464 (494)
Q Consensus 385 Vqd~l~~~~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (494)
||+.+.++.+.+++++.+.++.||||||+..|+++|+++|.+++. +++++
T Consensus 310 Vq~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~~~~-------------------~~~~~----------- 359 (382)
T cd06207 310 VQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEILK-------------------KHGGG----------- 359 (382)
T ss_pred hHHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHHHHHHHHHH-------------------HhCCC-----------
Confidence 999998888889888875445999999953499999999999999 88888
Q ss_pred hhccccCHHHHHHHHHHHHHcCCeeEeec
Q psy12838 465 ITLELQDEEKAKQYVEQMEREGRLQTETW 493 (494)
Q Consensus 465 ~~~~~~~~~~a~~~~~~~~~~~r~~~d~w 493 (494)
++++|++|+++|+++|||++|||
T Consensus 360 ------~~~~a~~~~~~l~~~~Ry~~dvw 382 (382)
T cd06207 360 ------DEELAEKKIEELEERGRYVVEAW 382 (382)
T ss_pred ------CHHHHHHHHHHHHHcCCeeeecC
Confidence 89999999999999999999999
No 5
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=100.00 E-value=4.4e-70 Score=571.06 Aligned_cols=368 Identities=28% Similarity=0.503 Sum_probs=322.0
Q ss_pred EEeeeeeeccCCCCCeEEEEEEeCCC--CccccCCCeeEEccCCCHHHHHHHHHHhhcCCCCC--CCCceEEEeecCCCC
Q psy12838 81 EQREEMTVLCEPALADVRHIKLKLPA--TLQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPL--TPSSRLRVVQKNQYM 156 (494)
Q Consensus 81 ~v~~n~~lt~~~~~~~~~~l~l~~~~--~~~y~~Gd~l~v~P~N~~~~V~~~l~~l~~~~~~l--~~~~~v~~~~~~~~~ 156 (494)
+|++|++||..++.++++|++|++++ ++.|+|||+|+|+|+|+++.|+++|++| ++ +.+..+.+.......
T Consensus 1 ~~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l-----~~~~~~~~~~~~~~~~~~~ 75 (406)
T cd06202 1 KVISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRL-----HDAPPPDQVIKLEVLEERS 75 (406)
T ss_pred CcceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHc-----CCCCCCCceEEEEecCCCC
Confidence 36788999998899999999999985 7999999999999999999999999999 55 556777765322211
Q ss_pred --------CCCccCCCcccHHHHHhhcccccCCCcHHHHHHHHhcCCCHHHHHHHHhhccccchhhhhhhhccCCCCEEe
Q psy12838 157 --------PVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDLLNYAHRPKRTVLE 228 (494)
Q Consensus 157 --------~~p~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~t~~d 228 (494)
..+..++.++|++++|++|+||+++|++.||+.||.||+|+.+|++|.+|++ +.++|.+|+.+++++++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~tl~~ll~~~lDl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~d 153 (406)
T cd06202 76 TALGIIKTWTPHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILE 153 (406)
T ss_pred ccccccccccccCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHH
Confidence 1122345699999999999999999999999999999999999999999996 778899999999999999
Q ss_pred eeccCCCCccccChHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCC--CCCccCchhhHhhcCCCCCeEEE
Q psy12838 229 MLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKM--LAPRYGLCSNYLAALNPGDSVAI 306 (494)
Q Consensus 229 vl~~fp~~~~~~~l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~--~~~~~G~~S~~L~~l~~Gd~v~i 306 (494)
+|.+||+ +++|+++|++++|+++||+|||||+|..+++.++|+|+++.|.+.. ++.+.|+||+||+++++||.|.|
T Consensus 154 vL~~f~s--~~~~~~~ll~~lp~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v 231 (406)
T cd06202 154 VLEEFPS--LQVPASLLLTQLPLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGDTVPC 231 (406)
T ss_pred HHHhCCc--CCCCHHHHHHhCcccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCCEEEE
Confidence 9999996 5799999999999999999999999987779999999999887653 33578999999999999999999
Q ss_pred EeeC-CCccCCCCCCCCEEEEecCCcchhhHHHHHHHHHc------CCCCCCceEEEEeeecCCcccccHHHHHHHHHcC
Q psy12838 307 SIKR-GSFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISN------QTASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN 379 (494)
Q Consensus 307 ~~p~-G~F~lp~~~~~piImIa~GtGIAPf~s~l~~~~~~------~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~ 379 (494)
.++. |.|++|.+..+|+||||+|||||||+||++++... .....+.++||||||+++.|++|++||+++.+.+
T Consensus 232 ~~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~ 311 (406)
T cd06202 232 FVRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKG 311 (406)
T ss_pred EEeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcC
Confidence 9875 48999987789999999999999999999998642 1112334689999999977999999999998765
Q ss_pred CC--------------eEEEecccccChhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy12838 380 QL--------------TFYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQDEEEAKQYATVL 445 (494)
Q Consensus 380 ~l--------------~~yVqd~l~~~~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~~~~~~~~ 445 (494)
.+ +.||||.+.++.+.+++++...++.||||||+ .|+++|+++|.+++.
T Consensus 312 ~~~~~~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~~-~M~~~V~~~L~~i~~---------------- 374 (406)
T cd06202 312 VLTEVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGDV-TMAEDVSQTIQRILA---------------- 374 (406)
T ss_pred CCceEEEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCCC-chHHHHHHHHHHHHH----------------
Confidence 43 27999999999999999886568999999995 899999999999999
Q ss_pred hhccCCCCcchhhhHHhhhhhccccCHHHHHHHHHHHHHcCCeeEeecC
Q psy12838 446 IAGNANDMPTAVREVLVKVITLELQDEEKAKQYVEQMEREGRLQTETWA 494 (494)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~~~d~w~ 494 (494)
+++++ +.++|++|+++|+++|||++|||+
T Consensus 375 ---~~~~~-----------------s~~~A~~~~~~l~~~gRy~~dvw~ 403 (406)
T cd06202 375 ---EHGNM-----------------SAEEAEEFILKLRDENRYHEDIFG 403 (406)
T ss_pred ---HhCCC-----------------CHHHHHHHHHHHHHcCCeEEEecc
Confidence 88899 899999999999999999999996
No 6
>KOG1158|consensus
Probab=100.00 E-value=2.1e-70 Score=585.36 Aligned_cols=374 Identities=30% Similarity=0.600 Sum_probs=333.0
Q ss_pred cceEEEEeeeeeeccCCCCCeEEEEEEeCCC-CccccCCCeeEEccCCCHHHHHHHHHHhhcCCCCCCCCc--eEEEeec
Q psy12838 76 FGYVKEQREEMTVLCEPALADVRHIKLKLPA-TLQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLTPSS--RLRVVQK 152 (494)
Q Consensus 76 fg~~~~v~~n~~lt~~~~~~~~~~l~l~~~~-~~~y~~Gd~l~v~P~N~~~~V~~~l~~l~~~~~~l~~~~--~v~~~~~ 152 (494)
|.|.+.+..|..+......+...|++++..+ +++|+|||+++|+|.|+.+.|++++++| +++++. .+.+...
T Consensus 244 ~~~~~~~~~~~~l~~~~~~r~~~~~e~~~~~~~~~Y~~GD~~gv~p~N~~~~V~~ll~~l-----~~~~~~~~~~~~~~~ 318 (645)
T KOG1158|consen 244 FPFPALVVVNLALSTPSSDRSCIHLELDIYGPGLRYEPGDHFGVLPPNSDELVDELLERL-----GLNPDTDFSLQLELE 318 (645)
T ss_pred ccchhhhhHHhhccCCCCceEEEEEEeecCCcccccccCCeeeecCCCCHHHHHHHHHHh-----cCCCccceEEEEeec
Confidence 4565566667666666678899999999887 8999999999999999999999999999 655443 3344333
Q ss_pred CCC----CCCCccCCCcccHHHHHhhcccccCCCcHHHHHHHHhcCCCHHHHHHHHhhccccchhhhhhhhccCCCCEEe
Q psy12838 153 NQY----MPVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDLLNYAHRPKRTVLE 228 (494)
Q Consensus 153 ~~~----~~~p~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~t~~d 228 (494)
... ...+.+++.++|++++|++|+||+++|++++++.||.||+|+.||++|+.|++++|..+|.+++....++++|
T Consensus 319 ~~~~~~~~~~~~p~~~~~t~~~~l~~~ldi~~~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl~d 398 (645)
T KOG1158|consen 319 TDTNPTPAKKPHPFPLPTTLRTALTHYLDITGPPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTLLD 398 (645)
T ss_pred CCCCCCccccCCCCCCCCcHHHHHHHhccccCCCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccHHH
Confidence 311 3346668899999999999999999999999999999999999999999999999999999999988899999
Q ss_pred eeccCCCCccccChHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCC-CCccCchhhHhhcCCCCCeEE--
Q psy12838 229 MLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKML-APRYGLCSNYLAALNPGDSVA-- 305 (494)
Q Consensus 229 vl~~fp~~~~~~~l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~-~~~~G~~S~~L~~l~~Gd~v~-- 305 (494)
||.+||+ +++|+++++.++|.++||+|||||||..+++.+++++.++.|.+..| ..|+|+||+||+++++|+.+.
T Consensus 399 Vl~~fps--~kpP~~~ll~~lp~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~~~ 476 (645)
T KOG1158|consen 399 VLEAFPS--CKPPLPHLLELLPRLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVPNP 476 (645)
T ss_pred HHhhCCC--CCCCHHHHHHhCccccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccCcc
Confidence 9999997 68999999999999999999999999999999999999999988775 667899999999999999998
Q ss_pred EEeeCCCccCCCCCCCCEEEEecCCcchhhHHHHHHHHHcCCC----CCCceEEEEeeecCCcccccHHHHHHHHHcCCC
Q psy12838 306 ISIKRGSFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTA----SAQRLHLFFGCRNQGADFYFNQEWQNAIQANQL 381 (494)
Q Consensus 306 i~~p~G~F~lp~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~----~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l 381 (494)
+......|++|.++.+||||||+||||||||||+|+|...... ... +|||||||+++.|++|++||+++.+.+.+
T Consensus 477 ~~~~~s~frlp~dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l 555 (645)
T KOG1158|consen 477 VPVGKSMFRLPSDPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYKKAGIL 555 (645)
T ss_pred eeecccceecCCCCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHHhcCcc
Confidence 5555679999999999999999999999999999999974221 333 68999999999999999999999766544
Q ss_pred e--------------EEEecccccChhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHHHHhhhhhchHHHHHHHHHHhh
Q psy12838 382 T--------------FYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQDEEEAKQYATVLIA 447 (494)
Q Consensus 382 ~--------------~yVqd~l~~~~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~~~~~~~~~~ 447 (494)
+ .||||++++.++.||++|.+.+++|||||++++|+++|.++|.+|++
T Consensus 556 ~~l~~A~SReq~~~k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~------------------ 617 (645)
T KOG1158|consen 556 TRLDVAFSREQTPKKIYVQDRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILA------------------ 617 (645)
T ss_pred hhheeeeeccCCCCceehhhHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHH------------------
Confidence 3 89999999999999999987799999999987799999999999999
Q ss_pred ccCCCCcchhhhHHhhhhhccccCHHHHHHHHHHHHHcCCeeEeec
Q psy12838 448 GNANDMPTAVREVLVKVITLELQDEEKAKQYVEQMEREGRLQTETW 493 (494)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~~~d~w 493 (494)
+.+++ ++++|.+++++|++++||++|||
T Consensus 618 -~~g~~-----------------~~~ea~~~lk~lk~~~Ry~~DVw 645 (645)
T KOG1158|consen 618 -KDGGL-----------------SEEEAEKYLKQLKKSKRYIEDVW 645 (645)
T ss_pred -hhCCc-----------------cHHHHHHHHHHhhhccccccccC
Confidence 99999 89999999999999999999999
No 7
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=100.00 E-value=2e-68 Score=555.72 Aligned_cols=360 Identities=29% Similarity=0.480 Sum_probs=318.8
Q ss_pred EeeeeeeccCCCCCeEEEEEEeCCCCccccCCCeeEEccCCCHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCCCCCcc
Q psy12838 82 QREEMTVLCEPALADVRHIKLKLPATLQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLTPSSRLRVVQKNQYMPVPYA 161 (494)
Q Consensus 82 v~~n~~lt~~~~~~~~~~l~l~~~~~~~y~~Gd~l~v~P~N~~~~V~~~l~~l~~~~~~l~~~~~v~~~~~~~~~~~p~~ 161 (494)
|+.|++||+.++.++++|++|+++++++|+|||+|+|+|.|+++.|+++|++| ++++++.|++.....+..+|
T Consensus 2 v~~~~~lt~~~~~~~~~~~~~~~~~~~~y~~GD~l~v~P~N~~~~V~~~l~~l-----~l~~~~~i~i~~~~~~~~~p-- 74 (384)
T cd06206 2 VVENRELTAPGVGPSKRHLELRLPDGMTYRAGDYLAVLPRNPPELVRRALRRF-----GLAWDTVLTISASGSATGLP-- 74 (384)
T ss_pred eeeEEEcCCCCCCccEEEEEEECCCCCccCCCCEEEEECCCCHHHHHHHHHHh-----CCCccCEEEEecCCCCCCCC--
Confidence 67899999999999999999999889999999999999999999999999999 89999999887644444444
Q ss_pred CCCcccHHHHHhhcccccCCCcHHHHHHHHhcCCCHHHHHHHHhhccccchhhhhhhhccCCCCEEeeeccCCCCccccC
Q psy12838 162 LRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDLLNYAHRPKRTVLEMLTDFPHATRAVP 241 (494)
Q Consensus 162 ~~~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~t~~dvl~~fp~~~~~~~ 241 (494)
++.|+|++++|++|+||+++|+++||+.||.||+|+.+|++|..+++ ++|.+++..++++++|+|.+||+ +++|
T Consensus 75 ~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~l~~~~~----~~~~~~~~~~~~~~~d~l~~f~s--~~~~ 148 (384)
T cd06206 75 LGTPISVSELLSSYVELSQPATRRQLAALAEATRCPDTKALLERLAG----EAYAAEVLAKRVSVLDLLERFPS--IALP 148 (384)
T ss_pred CCCCEEHHHHHHhhccccCCCCHHHHHHHHHHCCCHHHHHHHHHhhh----hHHHHHHHhcCCCHHHHHHhCCC--CCCC
Confidence 67899999999999999999999999999999999999999998863 46777778889999999999996 5799
Q ss_pred hHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCC-CCccCchhhHhhcCCCCCeEEEE--eeCCCccCCCC
Q psy12838 242 VEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKML-APRYGLCSNYLAALNPGDSVAIS--IKRGSFVFPKN 318 (494)
Q Consensus 242 l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~-~~~~G~~S~~L~~l~~Gd~v~i~--~p~G~F~lp~~ 318 (494)
++++++++|+++||+|||||+|..+++.++|+|+++.+.+..+ +.+.|.||+||+++++|+.|.+. +|.|.|.+|.+
T Consensus 149 ~~~~l~~~p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~i~~p~g~F~l~~~ 228 (384)
T cd06206 149 LATFLAMLPPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGDSIHVSVRPSHSAFRPPSD 228 (384)
T ss_pred HHHHHHhCcccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCCeEEEEEecCCCccCCCCC
Confidence 9999999999999999999999776789999999998876543 45689999999999999999975 56789999887
Q ss_pred CCCCEEEEecCCcchhhHHHHHHHHHc---CCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCe-------------
Q psy12838 319 EERPLIMVGPGTGIAPFRSYIHTRISN---QTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT------------- 382 (494)
Q Consensus 319 ~~~piImIa~GtGIAPf~s~l~~~~~~---~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~------------- 382 (494)
..+|+||||+|||||||+||++++... +. ..+.++||||||+++.|++|++||+++.+.+.++
T Consensus 229 ~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~-~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~~l~~a~Sr~~~~~~ 307 (384)
T cd06206 229 PSTPLIMIAAGTGLAPFRGFLQERAALLAQGR-KLAPALLFFGCRHPDHDDLYRDELEEWEAAGVVSVRRAYSRPPGGGC 307 (384)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCC-CcCCEEEEEeCCCCCcccchHHHHHHHHHCCCeEEEEEecccCCCCC
Confidence 789999999999999999999998753 22 2234689999999977999999999998755432
Q ss_pred EEEecccccChhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHHHHhhhhhchHHHHHHHHHHhhccCC----CCcchhh
Q psy12838 383 FYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQDEEEAKQYATVLIAGNAN----DMPTAVR 458 (494)
Q Consensus 383 ~yVqd~l~~~~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 458 (494)
.|||+.+.++.+.+++++.+ ++.||||||+ .|+++|.++|.+++. +++ ++
T Consensus 308 ~yVq~~i~~~~~~~~~~~~~-~~~vyiCGp~-~M~~~v~~~L~~i~~-------------------~~~~~~~~~----- 361 (384)
T cd06206 308 RYVQDRLWAEREEVWELWEQ-GARVYVCGDG-RMAPGVREVLKRIYA-------------------EKDERGGGS----- 361 (384)
T ss_pred EechhhHHhhHHHHHHHHHC-CcEEEEECCC-chHHHHHHHHHHHHH-------------------HhCcccCCC-----
Confidence 69999888888888887754 8999999995 699999999999998 777 88
Q ss_pred hHHhhhhhccccCHHHHHHHHHHHHHcCCeeEeec
Q psy12838 459 EVLVKVITLELQDEEKAKQYVEQMEREGRLQTETW 493 (494)
Q Consensus 459 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~~~d~w 493 (494)
+.++|++|+++|+++|||++|||
T Consensus 362 ------------~~~~A~~~~~~l~~~gry~~dvw 384 (384)
T cd06206 362 ------------DDEEAEEWLEELRNKGRYATDVF 384 (384)
T ss_pred ------------CHHHHHHHHHHHHHcCCeeeecC
Confidence 88999999999999999999999
No 8
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-67 Score=561.21 Aligned_cols=351 Identities=35% Similarity=0.667 Sum_probs=324.2
Q ss_pred ceEEEEeeeeeeccCCCCCeEEEEEEeCCC-CccccCCCeeEEccCCCHHHHHHHHHHhhcCCCCCCCCceEEEeecCCC
Q psy12838 77 GYVKEQREEMTVLCEPALADVRHIKLKLPA-TLQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLTPSSRLRVVQKNQY 155 (494)
Q Consensus 77 g~~~~v~~n~~lt~~~~~~~~~~l~l~~~~-~~~y~~Gd~l~v~P~N~~~~V~~~l~~l~~~~~~l~~~~~v~~~~~~~~ 155 (494)
++.+.+..|.+++..+++++++|++|++++ +++|+|||+++|+|+|+++.|+++|+.| ++++++.|.+.
T Consensus 221 ~~~a~~~~n~~l~~~~~~k~~rhie~~l~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~-----gl~~~~~v~~~----- 290 (587)
T COG0369 221 PSVAILLENRKLTGRDSDKDVRHIELDLPDSGLRYEPGDALGVWPENDPELVDEFLELL-----GLDPEEPVTVD----- 290 (587)
T ss_pred cceeEeeccccCCccccCceeEEEEeecccccceeCCCCeeEEcCCCCHHHHHHHHHHc-----CCCCCceeccC-----
Confidence 478899999999999999999999999999 9999999999999999999999999999 89988766221
Q ss_pred CCCCccCCCcccHHHHHhhcccccCCCcHHHHHHHHhcCCCHHHHHHHHhhccccchhhhhhhhccCCCCEEeeeccCCC
Q psy12838 156 MPVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDLLNYAHRPKRTVLEMLTDFPH 235 (494)
Q Consensus 156 ~~~p~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~t~~dvl~~fp~ 235 (494)
+.++++.++|++|+||++.| |.|+..|+.++.++..++.|..++ ..++..|.. +++++|+|++|++
T Consensus 291 -------~~~~~~~~~l~~~~e~~~~~-~~~~~~l~~~~~~~~~~~~l~~l~----~~~~~~~~~--~~~~~d~L~~f~~ 356 (587)
T COG0369 291 -------GETLPLVEALKSHFEFTSAP-KSLLENLAHFAGQEELRRLLEQLD----IADLQDYAK--RRTLIDVLRDFPP 356 (587)
T ss_pred -------CCcchHHHHHHHheecccch-HHHHHHHHHhcCCHHHHHHHHhhh----hHHHHhhhc--cccHHHHHhhccc
Confidence 56889999999999999999 999999999999999999999887 456667755 7899999999996
Q ss_pred CccccChHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCC-CCeEEEEeeCC-Cc
Q psy12838 236 ATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNP-GDSVAISIKRG-SF 313 (494)
Q Consensus 236 ~~~~~~l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~-Gd~v~i~~p~G-~F 313 (494)
+++|+++++..+|++.||.|||||++..++++++|+|.+|+|.+. ++.|.|+||+||+++.+ |+.|.|.++.+ +|
T Consensus 357 --~~l~~~~li~~l~~lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~-~~~r~GvcS~~L~~~~~~g~~i~v~v~~n~nf 433 (587)
T COG0369 357 --AKLPAEELIDLLPPLKPRLYSIASSPGVSPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLEEGDTIPVFVQPNKNF 433 (587)
T ss_pred --cCCCHHHHHHhCccCCCeeeEeccCCCCCCCeEEEEEEEEEeccC-CCcccccchHHHHhhhcCCCeEEEEeccCCcc
Confidence 589999999999999999999999999988999999999999987 44899999999998776 99999999988 99
Q ss_pred cCCCCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCe-----------
Q psy12838 314 VFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT----------- 382 (494)
Q Consensus 314 ~lp~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~----------- 382 (494)
++|.++.+||||||+||||||||||+|+|..++..+ ..|||||||+...||+|++||+++.+.|.++
T Consensus 434 ~lp~~~~~PiIMIG~GTGIAPFRafvq~r~~~~~~g--k~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~ 511 (587)
T COG0369 434 RLPEDPETPIIMIGPGTGIAPFRAFVQERAANGAEG--KNWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQE 511 (587)
T ss_pred ccCCCCCCceEEEcCCCCchhHHHHHHHHHhccccC--ceEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecCC
Confidence 999998899999999999999999999999987723 3469999999889999999999999988544
Q ss_pred --EEEecccccChhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHHHHhhhhhchHHHHHHHHHHhhccCCCCcchhhhH
Q psy12838 383 --FYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQDEEEAKQYATVLIAGNANDMPTAVREV 460 (494)
Q Consensus 383 --~yVqd~l~~~~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (494)
+||||+++++++.|++++++ ++.|||||++..|+++|.++|.+|+. +++++
T Consensus 512 ~KiYVQd~lre~~del~~~l~~-ga~~YVCGd~~~Ma~dV~~AL~~il~-------------------~~g~~------- 564 (587)
T COG0369 512 EKIYVQDRLREQADELWEWLEE-GAHIYVCGDAKGMAKDVEEALLDILA-------------------KEGGL------- 564 (587)
T ss_pred CCccHHHHHHHhHHHHHHHHHC-CCEEEEeCCCccchHHHHHHHHHHHH-------------------hcCCC-------
Confidence 89999999999999999997 69999999778999999999999999 89999
Q ss_pred HhhhhhccccCHHHHHHHHHHHHHcCCeeEeec
Q psy12838 461 LVKVITLELQDEEKAKQYVEQMEREGRLQTETW 493 (494)
Q Consensus 461 ~~~~~~~~~~~~~~a~~~~~~~~~~~r~~~d~w 493 (494)
+.|+|+++++.|+++|||+.|||
T Consensus 565 ----------s~eea~~~l~~lk~~~RY~~DVy 587 (587)
T COG0369 565 ----------SREEAEEYLKELKKEGRYQRDVY 587 (587)
T ss_pred ----------cHHHHHHHHHHHHhcCceeeecC
Confidence 88999999999999999999999
No 9
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=100.00 E-value=1.9e-64 Score=548.20 Aligned_cols=349 Identities=31% Similarity=0.499 Sum_probs=310.6
Q ss_pred cceEEEEeeeeeeccCCCCCeEEEEEEeCCC-CccccCCCeeEEccCCCHHHHHHHHHHhhcCCCCCCCCceEEEeecCC
Q psy12838 76 FGYVKEQREEMTVLCEPALADVRHIKLKLPA-TLQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLTPSSRLRVVQKNQ 154 (494)
Q Consensus 76 fg~~~~v~~n~~lt~~~~~~~~~~l~l~~~~-~~~y~~Gd~l~v~P~N~~~~V~~~l~~l~~~~~~l~~~~~v~~~~~~~ 154 (494)
.+|.++|+.|++||..++.++++|++|++++ +++|+|||+|+|+|.|+++.|+++|++| ++++++.|.+.
T Consensus 236 ~p~~a~v~~n~~Lt~~~~~k~~rhie~dl~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l-----~l~~~~~v~~~---- 306 (600)
T PRK10953 236 APLTASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELL-----WLKGDEPVTVD---- 306 (600)
T ss_pred CCeEEEEEEEeecCCCCCCceEEEEEEecCCCCCcccCCCEEEEEcCCCHHHHHHHHHHh-----CCCCCCeEEeC----
Confidence 4678899999999999999999999999976 8999999999999999999999999999 88999887653
Q ss_pred CCCCCccCCCcccHHHHHhhcccccCCCcHHHHHHHHhcCCCHHHHHHHHhhccccchhhhhhhhccCCCCEEeeeccCC
Q psy12838 155 YMPVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDLLNYAHRPKRTVLEMLTDFP 234 (494)
Q Consensus 155 ~~~~p~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~t~~dvl~~fp 234 (494)
..++|++++|++|+||+.+ ++.+|+.++.++.++. |.++. ++.+.+..|.. +++++|||++||
T Consensus 307 --------~~~~tl~~~l~~~~dl~~~-~~~~l~~~a~~~~~~~----l~~~~--~~~~~~~~~~~--~~~~~dvL~~f~ 369 (600)
T PRK10953 307 --------GKTLPLAEALQWHFELTVN-TANIVENYATLTRSET----LLPLV--GDKAALQHYAA--TTPIVDMVRFAP 369 (600)
T ss_pred --------CCCCCHHHHHHHhcccCCC-cHHHHHHHHHhCCCHH----HHHHh--cCHHHHHHHhc--CCCHHHHHHhCC
Confidence 1367899999999999975 7899999999998754 33343 23445666654 689999999998
Q ss_pred CCccccChHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhh-cCCCCCeEEEEeeCC-C
Q psy12838 235 HATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLA-ALNPGDSVAISIKRG-S 312 (494)
Q Consensus 235 ~~~~~~~l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~i~~p~G-~ 312 (494)
. .+++++++.++|+++||+|||||+|...++.++|+|+++.|.. .++.+.|+||+||. .+++|+.|.|.++.| .
T Consensus 370 ~---~~~~~q~l~ll~~l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~-~g~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~~ 445 (600)
T PRK10953 370 A---QLDAEQLIGLLRPLTPRLYSIASSQAEVENEVHITVGVVRYDI-EGRARAGGASSFLADRLEEEGEVRVFIEHNDN 445 (600)
T ss_pred C---CCCHHHHHHhCCCCCCeeeecccCCCCCCCeEEEEEEEEEeec-CCCCcCceEhhhhhhcCCCCCEEEEEeccCCc
Confidence 3 6899999999999999999999999877799999999999875 46778999999997 599999999999875 8
Q ss_pred ccCCCCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCe----------
Q psy12838 313 FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT---------- 382 (494)
Q Consensus 313 F~lp~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~---------- 382 (494)
|++|.++.+|+||||+||||||||||++++...+. . +.+|||||||++..||+|++||+++.+.+.++
T Consensus 446 F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~-~-~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afSRd~ 523 (600)
T PRK10953 446 FRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGA-P-GKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSRDQ 523 (600)
T ss_pred ccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcCC-C-CCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEEECCCC
Confidence 99998888999999999999999999999987654 2 23579999999778999999999999887653
Q ss_pred ---EEEecccccChhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHHHHhhhhhchHHHHHHHHHHhhccCCCCcchhhh
Q psy12838 383 ---FYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQDEEEAKQYATVLIAGNANDMPTAVRE 459 (494)
Q Consensus 383 ---~yVqd~l~~~~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (494)
+||||++.++.+.+++++.+ +++|||||++..|+++|+++|.+|++ +++++
T Consensus 524 ~~k~YVQ~~l~e~~~~l~~~l~~-ga~~YVCG~~~~M~~~V~~~L~~i~~-------------------~~g~~------ 577 (600)
T PRK10953 524 KEKIYVQDKLREQGAELWRWIND-GAHIYVCGDANRMAKDVEQALLEVIA-------------------EFGGM------ 577 (600)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHC-CcEEEEECCCccchHHHHHHHHHHHH-------------------HcCCC------
Confidence 79999999999999999964 89999999977899999999999999 89999
Q ss_pred HHhhhhhccccCHHHHHHHHHHHHHcCCeeEeec
Q psy12838 460 VLVKVITLELQDEEKAKQYVEQMEREGRLQTETW 493 (494)
Q Consensus 460 ~~~~~~~~~~~~~~~a~~~~~~~~~~~r~~~d~w 493 (494)
++++|++|+++|+++|||++|||
T Consensus 578 -----------~~e~A~~~l~~l~~~~RY~~Dvy 600 (600)
T PRK10953 578 -----------DTEAADEFLSELRVERRYQRDVY 600 (600)
T ss_pred -----------CHHHHHHHHHHHHHcCCeeeecC
Confidence 89999999999999999999999
No 10
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=100.00 E-value=4e-64 Score=518.74 Aligned_cols=343 Identities=30% Similarity=0.498 Sum_probs=299.2
Q ss_pred EeeeeeeccCCCCCeEEEEEEeCCC-CccccCCCeeEEccCCCHHHHHHHHHHhhcCCCCCCCCceEEEeecCCCCCCCc
Q psy12838 82 QREEMTVLCEPALADVRHIKLKLPA-TLQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLTPSSRLRVVQKNQYMPVPY 160 (494)
Q Consensus 82 v~~n~~lt~~~~~~~~~~l~l~~~~-~~~y~~Gd~l~v~P~N~~~~V~~~l~~l~~~~~~l~~~~~v~~~~~~~~~~~p~ 160 (494)
|++|++||++++.++++|++|++++ ++.|+|||+|+|+|.|+++.|++++++| ++++++.+.+ +
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l-----~l~~~~~~~~---------~- 66 (360)
T cd06199 2 VLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAAL-----GLSGDEPVST---------V- 66 (360)
T ss_pred cceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHh-----CcCCCCeEeC---------C-
Confidence 5789999999999999999999987 8999999999999999999999999999 8898876631 1
Q ss_pred cCCCcccHHHHHhhcccccCCCcHHHHHHHHhcCCCHHHHHHHHhhccccchhhhhhhhccCCCCEEeeeccCCCCcccc
Q psy12838 161 ALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDLLNYAHRPKRTVLEMLTDFPHATRAV 240 (494)
Q Consensus 161 ~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~t~~dvl~~fp~~~~~~ 240 (494)
.+.++|++++|++|+||+++ .++.|+.+|+++.++++|.. ++.++|.+ .++++|+|++||..++++
T Consensus 67 -~~~~~t~~~~l~~~~dl~~~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~~~ 132 (360)
T cd06199 67 -GGGTLPLREALIKHYEITTL----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPARL 132 (360)
T ss_pred -CCCcccHHHHHHhhhhhccC----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCCCC
Confidence 35689999999999999987 45558888998888887775 56677654 478999999999322578
Q ss_pred ChHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcC-CCCCeEEEEeeCC-CccCCCC
Q psy12838 241 PVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAAL-NPGDSVAISIKRG-SFVFPKN 318 (494)
Q Consensus 241 ~l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l-~~Gd~v~i~~p~G-~F~lp~~ 318 (494)
++++++.++|+++||+|||||+|..+++.++|+|++++|.+. ++.+.|.||+||+++ ++|+.|.+.++.| .|++|.+
T Consensus 133 ~~gq~l~l~~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~-~~~~~G~~S~~L~~~~~~Gd~v~v~~~~~~~F~lp~~ 211 (360)
T cd06199 133 TAEELLDLLRPLQPRLYSIASSPKAVPDEVHLTVAVVRYESH-GRERKGVASTFLADRLKEGDTVPVFVQPNPHFRLPED 211 (360)
T ss_pred CHHHHHHhCcCCCCcceeeccCcccCCCeEEEEEEEeeecCC-CCccceehhHHHHhcCCCCCEEEEEEecCCCcCCCCC
Confidence 999999999999999999999998777899999999988774 456789999999875 6999999998764 8999987
Q ss_pred CCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCe-------------EEE
Q psy12838 319 EERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT-------------FYV 385 (494)
Q Consensus 319 ~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~-------------~yV 385 (494)
..+|+||||+|||||||+||++++...+. . +.++||||||+++.|++|++||+++.+.+... .||
T Consensus 212 ~~~piImIa~GtGIAP~~s~l~~~~~~~~-~-~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~Sr~~~~~~yV 289 (360)
T cd06199 212 PDAPIIMVGPGTGIAPFRAFLQEREATGA-K-GKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAFSRDQAEKVYV 289 (360)
T ss_pred CCCCEEEEecCcChHHHHHHHHHHHhccC-C-CcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEEEccCCCCCccH
Confidence 78999999999999999999999987544 2 23579999999867999999999998765421 599
Q ss_pred ecccccChhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHHHHhhhhhchHHHHHHHHHHhhccCCCCcchhhhHHhhhh
Q psy12838 386 QHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQDEEEAKQYATVLIAGNANDMPTAVREVLVKVI 465 (494)
Q Consensus 386 qd~l~~~~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (494)
|+.+.++.+.+++++.. ++.||||||+..|+++|+++|.+|++ +++++
T Consensus 290 q~~l~~~~~~~~~~~~~-~~~vYvCG~~~~M~~~V~~~L~~i~~-------------------~~~~~------------ 337 (360)
T cd06199 290 QDRMREQGAELWAWLEE-GAHFYVCGDAKRMAKDVDAALLDIIA-------------------TEGGM------------ 337 (360)
T ss_pred HHHHHHhHHHHHHHHhC-CCEEEEECCCccccHHHHHHHHHHHH-------------------HhCCC------------
Confidence 99998888888888754 79999999954899999999999999 88899
Q ss_pred hccccCHHHHHHHHHHHHHcCCeeEeec
Q psy12838 466 TLELQDEEKAKQYVEQMEREGRLQTETW 493 (494)
Q Consensus 466 ~~~~~~~~~a~~~~~~~~~~~r~~~d~w 493 (494)
+.++|++|+++|+++|||++|||
T Consensus 338 -----~~~~a~~~~~~l~~~~Ry~~dvw 360 (360)
T cd06199 338 -----DEEEAEAYLKELKKEKRYQRDVY 360 (360)
T ss_pred -----CHHHHHHHHHHHHHcCCeeeecC
Confidence 89999999999999999999999
No 11
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=100.00 E-value=2e-63 Score=542.57 Aligned_cols=349 Identities=29% Similarity=0.546 Sum_probs=309.9
Q ss_pred cceEEEEeeeeeeccCCCCCeEEEEEEeCCC-CccccCCCeeEEccCCCHHHHHHHHHHhhcCCCCCCCCceEEEeecCC
Q psy12838 76 FGYVKEQREEMTVLCEPALADVRHIKLKLPA-TLQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLTPSSRLRVVQKNQ 154 (494)
Q Consensus 76 fg~~~~v~~n~~lt~~~~~~~~~~l~l~~~~-~~~y~~Gd~l~v~P~N~~~~V~~~l~~l~~~~~~l~~~~~v~~~~~~~ 154 (494)
.+|.++|+.|++||..++.++++|++|++++ ++.|+|||+|+|+|+|++++|+++|++| ++++++.+++.
T Consensus 233 ~p~~a~v~~n~~lt~~~~~k~~~hiel~l~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l-----~l~~~~~v~~~---- 303 (597)
T TIGR01931 233 NPFRAEVLENQKITGRNSKKDVRHIEIDLEGSGLHYEPGDALGVWYKNDPALVKEILKLL-----NLDPDEKVTIG---- 303 (597)
T ss_pred CCeEEEEEeeEecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEeCCCHHHHHHHHHHh-----CCCCCCeEEeC----
Confidence 4678899999999999999999999999986 8999999999999999999999999999 99999887653
Q ss_pred CCCCCccCCCcccHHHHHhhcccccCCCcHHHHHHHHhcCCCHHHHHHHHhhccccchhhhhhhhccCCCCEEeeeccCC
Q psy12838 155 YMPVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDLLNYAHRPKRTVLEMLTDFP 234 (494)
Q Consensus 155 ~~~~p~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~t~~dvl~~fp 234 (494)
+.++|++++|++|+||+. +++.||+.||++++|+..++.| + +.+.+.+|+. +++++|||.+||
T Consensus 304 --------~~~~tl~~~l~~~~dl~~-~~~~~l~~la~~~~~~~l~~~~----~--~~~~~~~y~~--~~~~~dvl~~fp 366 (597)
T TIGR01931 304 --------GKTIPLFEALITHFELTQ-NTKPLLKAYAELTGNKELKALI----A--DNEKLKAYIQ--NTPLIDLIRDYP 366 (597)
T ss_pred --------CCCcCHHHHHHhceeCCC-CCHHHHHHHHHhcCCHHHHHHh----c--CHHHHHHHHc--CCCHHHHHHHCC
Confidence 236899999999999998 5899999999999998655433 2 4556777765 689999999999
Q ss_pred CCccccChHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhc-CCCCCeEEEEeeC-CC
Q psy12838 235 HATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAA-LNPGDSVAISIKR-GS 312 (494)
Q Consensus 235 ~~~~~~~l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~i~~p~-G~ 312 (494)
.++++++++.++|++.||+|||||+|...++.++|+|++|.|.. .++.+.|.||+||++ +++|+.|.|.++. |.
T Consensus 367 ---~~~~~gq~v~ll~~~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~-~~~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~~ 442 (597)
T TIGR01931 367 ---ADLDAEQLISLLRPLTPRLYSISSSQSEVGDEVHLTVGVVRYQA-HGRARLGGASGFLAERLKEGDTVPVYIEPNDN 442 (597)
T ss_pred ---CCCCHHHHHHhCcccCCceeeeccCcccCCCEEEEEEEEEEecC-CCCccccchhHHHHhhCCCCCEEEEEEeeCCc
Confidence 37899999999999999999999999876789999999998874 467789999999986 9999999999976 48
Q ss_pred ccCCCCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCe----------
Q psy12838 313 FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT---------- 382 (494)
Q Consensus 313 F~lp~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~---------- 382 (494)
|++|.++.+|+||||+||||||||||++++...+. .. .++||||||+...|++|.+||+++.+.+.+.
T Consensus 443 F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~-~g-~~~LffG~R~~~~D~ly~~El~~~~~~~~l~~l~~afSRd~ 520 (597)
T TIGR01931 443 FRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDGA-KG-KNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSRDQ 520 (597)
T ss_pred ccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHccC-CC-CEEEEECCCCCCcchhHHHHHHHHHHcCCCceeEEEEecCC
Confidence 99998878999999999999999999999987664 22 3579999999658999999999998766432
Q ss_pred ---EEEecccccChhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHHHHhhhhhchHHHHHHHHHHhhccCCCCcchhhh
Q psy12838 383 ---FYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQDEEEAKQYATVLIAGNANDMPTAVRE 459 (494)
Q Consensus 383 ---~yVqd~l~~~~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (494)
+||||++.++.+.+++++.+ +++|||||+++.|+++|.++|.+++. +++++
T Consensus 521 ~~k~yVqd~l~e~~~~~~~~l~~-~a~vYvCG~~~~M~~~V~~~L~~i~~-------------------~~g~~------ 574 (597)
T TIGR01931 521 AEKIYVQHRIREQGAELWQWLQE-GAHIYVCGDAKKMAKDVHQALLDIIA-------------------KEGHL------ 574 (597)
T ss_pred CCCccHHHHHHHhHHHHHHHHhC-CcEEEEECCCccccHHHHHHHHHHHH-------------------HhCCC------
Confidence 69999999998899998875 89999999557999999999999999 89999
Q ss_pred HHhhhhhccccCHHHHHHHHHHHHHcCCeeEeec
Q psy12838 460 VLVKVITLELQDEEKAKQYVEQMEREGRLQTETW 493 (494)
Q Consensus 460 ~~~~~~~~~~~~~~~a~~~~~~~~~~~r~~~d~w 493 (494)
+.++|++|+++|+++|||++|||
T Consensus 575 -----------s~~~A~~~l~~l~~~~RY~~DVy 597 (597)
T TIGR01931 575 -----------DAEEAEEYLTDLRVEKRYQRDVY 597 (597)
T ss_pred -----------CHHHHHHHHHHHHHcCCeeeecC
Confidence 89999999999999999999999
No 12
>PRK06214 sulfite reductase; Provisional
Probab=100.00 E-value=4.6e-63 Score=527.40 Aligned_cols=348 Identities=27% Similarity=0.453 Sum_probs=301.9
Q ss_pred cceEEEEeeeeeeccCCCCCeEEEEEEeCCC-CccccCCCeeEEccCCCHHHHHHHHHHhhcCCCCCCCCceEEEeecCC
Q psy12838 76 FGYVKEQREEMTVLCEPALADVRHIKLKLPA-TLQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLTPSSRLRVVQKNQ 154 (494)
Q Consensus 76 fg~~~~v~~n~~lt~~~~~~~~~~l~l~~~~-~~~y~~Gd~l~v~P~N~~~~V~~~l~~l~~~~~~l~~~~~v~~~~~~~ 154 (494)
.+|.+.+++|++||+.++.++++||+|++++ +++|+|||+|+|+|.|++++|+++|++| +++++..+
T Consensus 167 ~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~l-----gl~~~~~~------- 234 (530)
T PRK06214 167 NPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAAL-----GAPPEFPI------- 234 (530)
T ss_pred CCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHh-----CCCccCcc-------
Confidence 4688899999999999999999999999986 8999999999999999999999999999 88876432
Q ss_pred CCCCCccCCCcccHHHHHhhcccccCCCcHHHHHHHHhcCCCHHHHHHHHhhccccchhhhhhhhccCCCCEEeeeccCC
Q psy12838 155 YMPVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDLLNYAHRPKRTVLEMLTDFP 234 (494)
Q Consensus 155 ~~~~p~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~t~~dvl~~fp 234 (494)
.++|++++|++|+||+++| +.||+.|+.+++++. +++|+.|++.+..+... ...+++|+|++||
T Consensus 235 ---------~~~tlr~~L~~~~Dl~~~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~~-----~~~~vldvL~~fp 298 (530)
T PRK06214 235 ---------GGKTLREALLEDVSLGPAP-DGLFELLSYITGGAA-RKKARALAAGEDPDGDA-----ATLDVLAALEKFP 298 (530)
T ss_pred ---------CCccHHHHHHHheeccCCC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhhh-----hhCcHHHHHHhCC
Confidence 2689999999999999976 889999999998875 77777777532222211 1357999999999
Q ss_pred CCccccChHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhh-cCCCCCeEEEEeeC-CC
Q psy12838 235 HATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLA-ALNPGDSVAISIKR-GS 312 (494)
Q Consensus 235 ~~~~~~~l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~i~~p~-G~ 312 (494)
+ +++|++++++.+|++++|+|||||+|..+++.++|+|++|.|.+ .++.+.|+||+||. ++++|+.|.|.++. +.
T Consensus 299 ~--~~~~~~~lle~lp~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~Gd~V~v~i~~~~g 375 (530)
T PRK06214 299 G--IRPDPEAFVEALDPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAPGTRVRVYVQKAHG 375 (530)
T ss_pred C--CCCCHHHHHhhcCCCCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCCCCEEEEEecCCCC
Confidence 6 57999999999999999999999999876799999999998875 45667899999997 79999999998854 34
Q ss_pred ccCCCCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCe----------
Q psy12838 313 FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT---------- 382 (494)
Q Consensus 313 F~lp~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~---------- 382 (494)
|++|.+..+|+||||+||||||||||++++..... . +.++||||||+...|++|++||+++.+.+.+.
T Consensus 376 F~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~~-~-g~~~LffG~R~~~~D~ly~dEL~~l~~~g~l~~l~~afSRd~ 453 (530)
T PRK06214 376 FALPADPNTPIIMVGPGTGIAPFRAFLHERAATKA-P-GRNWLFFGHQRSATDFFYEDELNGLKAAGVLTRLSLAWSRDG 453 (530)
T ss_pred CccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhcC-C-CCeEEEEEecCChhhhHHHHHHHHHHHhCCceEEEEEEecCC
Confidence 99997777899999999999999999999876443 2 23579999988778999999999998766532
Q ss_pred ---EEEecccccChhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHHHHhhhhhchHHHHHHHHHHhhccCCCCcchhhh
Q psy12838 383 ---FYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQDEEEAKQYATVLIAGNANDMPTAVRE 459 (494)
Q Consensus 383 ---~yVqd~l~~~~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (494)
.||||++.++.+.+++++.+ +++||||||++.|+++|+++|.+|+. +++++
T Consensus 454 ~~k~YVQ~~L~e~~~~l~~~l~~-~a~iYVCGp~~~M~~~V~~~L~~il~-------------------~~g~~------ 507 (530)
T PRK06214 454 EEKTYVQDRMRENGAELWKWLEE-GAHFYVCGDAKRMAKDVERALVDIVA-------------------QFGGR------ 507 (530)
T ss_pred CCCCchhhHHHHHHHHHHhhhcC-CcEEEEeCChHHHHHHHHHHHHHHHH-------------------HhcCC------
Confidence 59999998888889988764 89999999976799999999999999 88999
Q ss_pred HHhhhhhccccCHHHHHHHHHHHHHcCCeeEeec
Q psy12838 460 VLVKVITLELQDEEKAKQYVEQMEREGRLQTETW 493 (494)
Q Consensus 460 ~~~~~~~~~~~~~~~a~~~~~~~~~~~r~~~d~w 493 (494)
++++|++|+++|+++|||++|||
T Consensus 508 -----------s~~~A~~~l~~l~~~gRY~~Dvw 530 (530)
T PRK06214 508 -----------SPDEAVAFVAELKKAGRYQADVY 530 (530)
T ss_pred -----------CHHHHHHHHHHHHHCCCEEEecC
Confidence 89999999999999999999999
No 13
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=100.00 E-value=1.4e-42 Score=334.78 Aligned_cols=212 Identities=36% Similarity=0.582 Sum_probs=180.0
Q ss_pred cceEEEEeeeeeeccCCCCCeEEEEEEeCCC-CccccCCCeeEEccCCCHHHHHHHHHHhhcCCCCCCCCceEEEeecCC
Q psy12838 76 FGYVKEQREEMTVLCEPALADVRHIKLKLPA-TLQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLTPSSRLRVVQKNQ 154 (494)
Q Consensus 76 fg~~~~v~~n~~lt~~~~~~~~~~l~l~~~~-~~~y~~Gd~l~v~P~N~~~~V~~~l~~l~~~~~~l~~~~~v~~~~~~~ 154 (494)
..|.++|++|++||..++.++++|++|++++ ++.|+|||+|+|+|+|+++.|++++++| ++++++.|.+....+
T Consensus 7 ~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~l-----gl~~d~~v~~~~~~~ 81 (219)
T PF00667_consen 7 NPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRL-----GLDPDEPVTLKPKEQ 81 (219)
T ss_dssp B-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHH-----TSGTTSEEEEEESST
T ss_pred CCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHh-----CCCcceEEEEEeccc
Confidence 4689999999999999999999999999987 8999999999999999999999999999 999999999988775
Q ss_pred CCCCCccCCCcccHHHHHhhcccccCCCcHHHHHHHHhcCCCHHHHHHHHhhccccchhhhhhhhccCCCCEEeeeccCC
Q psy12838 155 YMPVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDLLNYAHRPKRTVLEMLTDFP 234 (494)
Q Consensus 155 ~~~~p~~~~~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~d~~~k~~L~~l~s~~~~~~~~~~~~~~~~t~~dvl~~fp 234 (494)
......+++.++||+++|++|+||+++|++.||+.||.|++|+.+|++|++|++.+|.++|.+|+.+.+++++|+|.+||
T Consensus 82 ~~~~~~~~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~dil~~fp 161 (219)
T PF00667_consen 82 NNSVKPPFPSPITLRDLLTHYLDITSPPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLDILEDFP 161 (219)
T ss_dssp TSSCCSSSSSSEEHHHHHHHTB-TSSB--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHHHHHHST
T ss_pred ccccccccccceeeeeeeeeeeecccccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHHHHhhCc
Confidence 43333348899999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred CCccccChHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhH
Q psy12838 235 HATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNY 294 (494)
Q Consensus 235 ~~~~~~~l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~ 294 (494)
+ +++|+++|++++|+++||+|||||+|..+|+.++|+|++|.|.+..++.+.|+||+|
T Consensus 162 s--~~~pl~~ll~~lp~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 162 S--CKPPLEELLELLPPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp T--BTC-HHHHHHHS-B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred c--cCCCHHHhhhhCCCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 6 579999999999999999999999999999999999999999988899999999998
No 14
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=1.5e-35 Score=304.22 Aligned_cols=199 Identities=25% Similarity=0.449 Sum_probs=166.6
Q ss_pred CCcccccccCCCC---CCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCCcc-CCCCCCCCEEEEec
Q psy12838 253 RPRAFSIASSPKT---HSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFV-FPKNEERPLIMVGP 328 (494)
Q Consensus 253 ~pR~YSIaSsp~~---~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~F~-lp~~~~~piImIa~ 328 (494)
.+|+|||||+|.. +++.++|+|+++.|.+..+....|.||+||+++++||.|.|.+|.|.|. +|.+..+|+||||+
T Consensus 144 ~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd~V~v~GP~G~~fllp~~~~~~iImIAg 223 (367)
T PLN03115 144 KLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPKDPNATIIMLAT 223 (367)
T ss_pred ceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCCcCEEEEEeecCCceeCCcCCCCCEEEEeC
Confidence 5799999999843 2478999999998876666667899999999999999999999999754 56566789999999
Q ss_pred CCcchhhHHHHHHHHHcCCCC---CCceEEEEeeecCCcccccHHHHHHHHHcC--CCe----------------EEEec
Q psy12838 329 GTGIAPFRSYIHTRISNQTAS---AQRLHLFFGCRNQGADFYFNQEWQNAIQAN--QLT----------------FYVQH 387 (494)
Q Consensus 329 GtGIAPf~s~l~~~~~~~~~~---~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~--~l~----------------~yVqd 387 (494)
|||||||+||++++....... ...++||||+|+. .|++|.+||+++.+.. .++ .|||+
T Consensus 224 GTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~-~dlly~dELe~l~~~~p~~f~v~~a~SR~~~~~~G~kgyVqd 302 (367)
T PLN03115 224 GTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTS-SSLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGEKMYIQT 302 (367)
T ss_pred CeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCH-HHhhHHHHHHHHHHhCCCCEEEEEEEcCCCcccCCcceeehh
Confidence 999999999999876432211 2346899999998 6999999999997642 222 69999
Q ss_pred ccccChhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHHHHhhhhhchHHHHHHHHHHhhccCCCCcchhhhHHhhhhhc
Q psy12838 388 VMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQDEEEAKQYATVLIAGNANDMPTAVREVLVKVITL 467 (494)
Q Consensus 388 ~l~~~~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (494)
.+.++.+.+++++...++.|||||| ++|.++|.++|.+++. ..| +
T Consensus 303 ~i~e~~e~l~~~l~~~~~~vYiCGp-~~M~~~V~~~l~~l~~-------------------~~g-~-------------- 347 (367)
T PLN03115 303 RMAEYAEELWELLKKDNTYVYMCGL-KGMEKGIDDIMVSLAA-------------------KDG-I-------------- 347 (367)
T ss_pred HHHHHHHHHHhhcccCCeEEEEeCC-HHHHHHHHHHHHHHHH-------------------HhC-c--------------
Confidence 9988888888888655789999999 7999999999999987 432 2
Q ss_pred cccCHHHHHHHHHHHHHcCCeeEeec
Q psy12838 468 ELQDEEKAKQYVEQMEREGRLQTETW 493 (494)
Q Consensus 468 ~~~~~~~a~~~~~~~~~~~r~~~d~w 493 (494)
++.+++++|+++|||++|||
T Consensus 348 ------~~~~~~~~lk~~~r~~~e~y 367 (367)
T PLN03115 348 ------DWFEYKKQLKKAEQWNVEVY 367 (367)
T ss_pred ------cHHHHHHHHHHCCCeEEecC
Confidence 57899999999999999998
No 15
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=100.00 E-value=3e-34 Score=284.85 Aligned_cols=231 Identities=36% Similarity=0.655 Sum_probs=184.1
Q ss_pred CCEEeeeccCC--CCccccChHHHHHHhCC-CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCC
Q psy12838 224 RTVLEMLTDFP--HATRAVPVEYLFELFSP-IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNP 300 (494)
Q Consensus 224 ~t~~dvl~~fp--~~~~~~~l~~ll~~lp~-~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~ 300 (494)
+.+..+..+.+ ......|+|++...++. ..+|+|||+|.|...++.++|+|+.+++....+..+.|.+|.||+++++
T Consensus 15 ~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~ 94 (267)
T cd06182 15 RSTRHLEFDLSGNSVLKYQPGDHLGVIPPNPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQL 94 (267)
T ss_pred CceEEEEEecCCCCcCccCCCCEEEEecCCCCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCCC
Confidence 34555544444 22223566665544543 5689999999997545899999999987665555567999999999999
Q ss_pred CCeEEEEeeCC-CccCCCCCCCCEEEEecCCcchhhHHHHHHHHHc---CCCCCCceEEEEeeecCCcccccHHHHHHHH
Q psy12838 301 GDSVAISIKRG-SFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISN---QTASAQRLHLFFGCRNQGADFYFNQEWQNAI 376 (494)
Q Consensus 301 Gd~v~i~~p~G-~F~lp~~~~~piImIa~GtGIAPf~s~l~~~~~~---~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~ 376 (494)
|+.|.+.+|.| .|.++.+..+|+||||+|||||||+++++++... .. ....++||||+|+.+.|++|.++|+++.
T Consensus 95 Gd~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~-~~~~v~l~~g~r~~~~d~~~~del~~~~ 173 (267)
T cd06182 95 GAKVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGK-ARGPAWLFFGCRNFASDYLYREELQEAL 173 (267)
T ss_pred CCEEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccc-cCCCEEEEEeCCCCcccccHHHHHHHHH
Confidence 99999999999 9999877678999999999999999999999863 22 1224689999999856899999999998
Q ss_pred HcCC-Ce-------------EEEecccccChhHHHHhhccCCCEEEEeCCCCc-hHHHHHHHHHHHHhhhhhchHHHHHH
Q psy12838 377 QANQ-LT-------------FYVQHVMSRHLPLLQDLICSHQATVLIAGNAND-MPTAVREVLVETITLELQDEEEAKQY 441 (494)
Q Consensus 377 ~~~~-l~-------------~yVqd~l~~~~~~l~~~l~~~~~~vYvCGp~~~-M~~~V~~~L~~i~~~~~~~~~~~~~~ 441 (494)
+.+. ++ .||++.+....+.+.+.+.+ ++.|||||| +. |+++|.++|.+++.
T Consensus 174 ~~~~~~~~~~~~S~~~~~~~~~v~~~l~~~~~~l~~~l~~-~~~vyvCGp-~~~m~~~v~~~L~~~~~------------ 239 (267)
T cd06182 174 KDGALTRLDVAFSREQAEPKVYVQDKLKEHAEELRRLLNE-GAHIYVCGD-AKSMAKDVEDALVKIIA------------ 239 (267)
T ss_pred hCCCcceEEEEEccCCCCCceehHHHHHHhHHHHHHHHhc-CCEEEEECC-cccchHHHHHHHHHHHH------------
Confidence 7542 21 46666665555556665643 669999999 57 99999999999999
Q ss_pred HHHHhhccCCCCcchhhhHHhhhhhccccCHHHHHHHHHHHHHcCCeeEeec
Q psy12838 442 ATVLIAGNANDMPTAVREVLVKVITLELQDEEKAKQYVEQMEREGRLQTETW 493 (494)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~~~d~w 493 (494)
+++++ +.++|++|+++|+++|||++|||
T Consensus 240 -------~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~ 267 (267)
T cd06182 240 -------KAGGV-----------------DESDAEEYLKELEDEGRYVEDVW 267 (267)
T ss_pred -------HcCCC-----------------CHHHHHHHHHHHHHcCCeEEecC
Confidence 88888 89999999999999999999999
No 16
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=5.5e-32 Score=271.36 Aligned_cols=198 Identities=28% Similarity=0.466 Sum_probs=157.2
Q ss_pred CCcccccccCCCC---CCCeEEEEEEEEEeecCCC-CCccCchhhHhhcCCCCCeEEEEeeCCCccCC-CCCCCCEEEEe
Q psy12838 253 RPRAFSIASSPKT---HSGELHLLVAIVKYKTKML-APRYGLCSNYLAALNPGDSVAISIKRGSFVFP-KNEERPLIMVG 327 (494)
Q Consensus 253 ~pR~YSIaSsp~~---~~~~i~l~V~~v~~~~~~~-~~~~G~~S~~L~~l~~Gd~v~i~~p~G~F~lp-~~~~~piImIa 327 (494)
.+|+|||||+|.. +++.++|+|+.+++.+... ..+.|.+|+||+++++||.|.|.+|.|.|.+. .+..+|+||||
T Consensus 63 ~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIa 142 (286)
T cd06208 63 KLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGDDVQITGPVGKTMLLPEDPNATLIMIA 142 (286)
T ss_pred CceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCCCCEEEEEeecCCcccCCCCCCCCEEEEe
Confidence 4799999999854 2479999999997544322 33459999999999999999999999987654 34467999999
Q ss_pred cCCcchhhHHHHHHHHHcC---CCCCCceEEEEeeecCCcccccHHHHHHHHHcC--CCe----------------EEEe
Q psy12838 328 PGTGIAPFRSYIHTRISNQ---TASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN--QLT----------------FYVQ 386 (494)
Q Consensus 328 ~GtGIAPf~s~l~~~~~~~---~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~--~l~----------------~yVq 386 (494)
+|||||||+||++++.... ......++||||+|+. .|++|.++|+++.+.. .++ .||+
T Consensus 143 gGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~-~d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~ 221 (286)
T cd06208 143 TGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNS-DSLLYDDELEKYPKQYPDNFRIDYAFSREQKNADGGKMYVQ 221 (286)
T ss_pred cCccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCc-cchhHHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCceehh
Confidence 9999999999999988652 1112346899999999 5899999999998742 232 3555
Q ss_pred cccccChhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHHHHhhhhhchHHHHHHHHHHhhccCCCCcchhhhHHhhhhh
Q psy12838 387 HVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQDEEEAKQYATVLIAGNANDMPTAVREVLVKVIT 466 (494)
Q Consensus 387 d~l~~~~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (494)
+.+.+..+.+++.+...+..||+||| ++|+++|.++|.+++.
T Consensus 222 ~~i~~~~~~l~~~l~~~~~~vYiCGp-~~m~~~v~~~L~~~~~------------------------------------- 263 (286)
T cd06208 222 DRIAEYAEEIWNLLDKDNTHVYICGL-KGMEPGVDDALTSVAE------------------------------------- 263 (286)
T ss_pred hHHHHhHHHHHHHHhcCCcEEEEeCC-chHHHHHHHHHHHHHh-------------------------------------
Confidence 55555555566656544579999999 6899999999999886
Q ss_pred ccccCHHHHHHHHHHHHHcCCeeEeec
Q psy12838 467 LELQDEEKAKQYVEQMEREGRLQTETW 493 (494)
Q Consensus 467 ~~~~~~~~a~~~~~~~~~~~r~~~d~w 493 (494)
+..+|.++++.|+++|||+.|+|
T Consensus 264 ----~~~~~~~~~~~~~~~gr~~~~~~ 286 (286)
T cd06208 264 ----GGLAWEEFWESLKKKGRWHVEVY 286 (286)
T ss_pred ----ccHHHHHHHHHHHHcCCeEEecC
Confidence 33579999999999999999999
No 17
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.98 E-value=8.9e-32 Score=272.40 Aligned_cols=225 Identities=20% Similarity=0.338 Sum_probs=162.8
Q ss_pred EEeeeccCCCCccccChHHHHHHhCC---------CCCcccccccCCCCC---CCeEEEEEEEEEeecCCCC----CccC
Q psy12838 226 VLEMLTDFPHATRAVPVEYLFELFSP---------IRPRAFSIASSPKTH---SGELHLLVAIVKYKTKMLA----PRYG 289 (494)
Q Consensus 226 ~~dvl~~fp~~~~~~~l~~ll~~lp~---------~~pR~YSIaSsp~~~---~~~i~l~V~~v~~~~~~~~----~~~G 289 (494)
+..+..+.+......|+|++...+|. ...|+|||||+|... ...++|+|+++.|.+.... ...|
T Consensus 44 v~~l~l~~~~~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G 123 (307)
T PLN03116 44 TCHIVIDHGGNVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKG 123 (307)
T ss_pred eEEEEEecCCCCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCc
Confidence 44444333322223566665444442 147999999999532 2389999999865443211 1579
Q ss_pred chhhHhhcCCCCCeEEEEeeCCCccC-CC-CCCCCEEEEecCCcchhhHHHHHHHHHcCCC---CCCceEEEEeeecCCc
Q psy12838 290 LCSNYLAALNPGDSVAISIKRGSFVF-PK-NEERPLIMVGPGTGIAPFRSYIHTRISNQTA---SAQRLHLFFGCRNQGA 364 (494)
Q Consensus 290 ~~S~~L~~l~~Gd~v~i~~p~G~F~l-p~-~~~~piImIa~GtGIAPf~s~l~~~~~~~~~---~~~~i~Lf~G~R~~~~ 364 (494)
.+|+||+++++||.|.|.+|.|.|.+ +. +..+|+||||+|||||||+||++++...+.. ....++||||+|+. .
T Consensus 124 ~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~-~ 202 (307)
T PLN03116 124 VCSNFLCDAKPGDKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANS-D 202 (307)
T ss_pred chhhhHhhCCCCCEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCc-c
Confidence 99999999999999999999998876 43 4568999999999999999999998764421 12346899999998 6
Q ss_pred ccccHHHHHHHHHcC--CCe----------------EEEecccccChhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHH
Q psy12838 365 DFYFNQEWQNAIQAN--QLT----------------FYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVE 426 (494)
Q Consensus 365 d~ly~~el~~~~~~~--~l~----------------~yVqd~l~~~~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~ 426 (494)
|++|.+||+++.+.. .++ .||++.+.+..+.+...+. .++.||+||| +.|++++.++|.+
T Consensus 203 d~~~~deL~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~~~~~~-~~~~vYiCGp-~~mv~~v~~~L~~ 280 (307)
T PLN03116 203 SLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSDEIFKLLD-NGAHIYFCGL-KGMMPGIQDTLKR 280 (307)
T ss_pred cchHHHHHHHHHHhCCCcEEEEEEEccCCcccCCCccchhhHHHHHHHHHHhhhc-CCcEEEEeCC-HHHHHHHHHHHHH
Confidence 999999999998754 343 2344433333233333333 3689999999 7999999999999
Q ss_pred HHhhhhhchHHHHHHHHHHhhccCCCCcchhhhHHhhhhhccccCHHHHHHHHHHHHHcCCeeEeec
Q psy12838 427 TITLELQDEEEAKQYATVLIAGNANDMPTAVREVLVKVITLELQDEEKAKQYVEQMEREGRLQTETW 493 (494)
Q Consensus 427 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~~~d~w 493 (494)
++. +. ++ +|.++++.|+++|||++|+|
T Consensus 281 ~~~-------------------~~-g~--------------------~~~~~~~~l~~~~r~~~~~~ 307 (307)
T PLN03116 281 VAE-------------------ER-GE--------------------SWEEKLSGLKKNKQWHVEVY 307 (307)
T ss_pred HHH-------------------Hc-Cc--------------------cHHHHHHHHHHcCceEEecC
Confidence 877 43 34 25689999999999999999
No 18
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.98 E-value=9.5e-32 Score=281.76 Aligned_cols=226 Identities=24% Similarity=0.343 Sum_probs=171.5
Q ss_pred CEEeeeccCCCC-ccccChHHHHHHhCC-------CCCcccccccCCCCC---CCeEEEEEEEEEeecCCCCCccCchhh
Q psy12838 225 TVLEMLTDFPHA-TRAVPVEYLFELFSP-------IRPRAFSIASSPKTH---SGELHLLVAIVKYKTKMLAPRYGLCSN 293 (494)
Q Consensus 225 t~~dvl~~fp~~-~~~~~l~~ll~~lp~-------~~pR~YSIaSsp~~~---~~~i~l~V~~v~~~~~~~~~~~G~~S~ 293 (494)
.+..+..+++.. ....|+|++...+|. ..+|+|||+|++..+ .+.++|+|+++++ +..+..+.|.+|+
T Consensus 161 ~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~~-~~~g~~~~G~~S~ 239 (411)
T TIGR03224 161 DIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVKRVTT-DHQGNAVRGVASN 239 (411)
T ss_pred ceEEEEEeCCCCcCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEEEEEe-cCCCCcCcccchh
Confidence 344444445431 113566665444442 357999999987431 1479999999863 3345556799999
Q ss_pred HhhcCCCCCeEEEEeeCCC-ccCCCCCCCCEEEEecCCcchhhHHHHHHHHHcCCC-CCCceEEEEeeecCCcccccHHH
Q psy12838 294 YLAALNPGDSVAISIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTA-SAQRLHLFFGCRNQGADFYFNQE 371 (494)
Q Consensus 294 ~L~~l~~Gd~v~i~~p~G~-F~lp~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~-~~~~i~Lf~G~R~~~~d~ly~~e 371 (494)
||+++++||.|.+.+|.|. |.+|....+|+||||+|||||||+||++++...... ....++||||+|+. .|++|.++
T Consensus 240 ~L~~lk~Gd~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~~~~~v~L~~G~Rt~-~dl~y~~e 318 (411)
T TIGR03224 240 YLCDLKKGDKVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHGEGGKLMLFFGARTK-EELPYFGP 318 (411)
T ss_pred HHhcCCCcCEEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcCCCCCEEEEEecCcc-ccchHHHH
Confidence 9999999999999999996 677755568999999999999999999998753110 12246899999999 68999999
Q ss_pred HHHHHHcCC------------CeEEEecccccChhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHHHHhhhhhchHHHH
Q psy12838 372 WQNAIQANQ------------LTFYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQDEEEAK 439 (494)
Q Consensus 372 l~~~~~~~~------------l~~yVqd~l~~~~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~~ 439 (494)
|+++.+... -+.|||+.+++..+.+.+++...++.||+||| +.|.++|.++|.++..
T Consensus 319 L~~l~~~~~~~~~~~sr~~~~~~g~V~d~l~~~~~~v~~ll~~~~~~vYiCGp-~~M~~~v~~~L~~~~~---------- 387 (411)
T TIGR03224 319 LQKLPKDFIDINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYIYICGL-KGMEEGVLDAFRDVCA---------- 387 (411)
T ss_pred HHHHHhcCceEEEEeccCCccCcccHhhHHHHhHHHHHHHHhcCCcEEEEECC-HHHHHHHHHHHHHHHH----------
Confidence 998875321 12688888877777777777655689999999 7999999999999987
Q ss_pred HHHHHHhhccCCCCcchhhhHHhhhhhccccCHHHHHHHHHHHHHcCCeeEeec
Q psy12838 440 QYATVLIAGNANDMPTAVREVLVKVITLELQDEEKAKQYVEQMEREGRLQTETW 493 (494)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~~~d~w 493 (494)
+.+ + .+++++++|+++|||+.|+|
T Consensus 388 ---------~~~-~--------------------~~~~~~~~l~~~~r~~~e~~ 411 (411)
T TIGR03224 388 ---------TNG-L--------------------SWETLEPRLRAEGRLHLETY 411 (411)
T ss_pred ---------HcC-c--------------------CHHHHHHHHHHCCCeEEecC
Confidence 432 2 35679999999999999999
No 19
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.98 E-value=1.8e-31 Score=261.89 Aligned_cols=197 Identities=30% Similarity=0.468 Sum_probs=154.2
Q ss_pred cChHHHHHHhC-CCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhc-CCCCCeEEEEeeCC-CccCC
Q psy12838 240 VPVEYLFELFS-PIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAA-LNPGDSVAISIKRG-SFVFP 316 (494)
Q Consensus 240 ~~l~~ll~~lp-~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~i~~p~G-~F~lp 316 (494)
.|+|++...++ ...+|+|||||+|.. +.++|+|+.+... ..+.|.+|+||++ +++|+.|.+.+|.| .|.++
T Consensus 33 ~pGQ~v~l~~~~~~~~R~YSIas~p~~--~~l~l~Vk~~~~~----~~~~G~~S~~L~~~~~~Gd~v~i~gp~gg~F~~~ 106 (245)
T cd06200 33 QAGDIAEIGPRHPLPHREYSIASLPAD--GALELLVRQVRHA----DGGLGLGSGWLTRHAPIGASVALRLRENPGFHLP 106 (245)
T ss_pred cCCcEEEecCCCCCCCcceEeccCCCC--CEEEEEEEEeccC----CCCCeeechhhhhCCCCCCEEEEEecCCCcccCC
Confidence 46666544444 367899999999963 7899999988521 1234899999975 68999999999865 88887
Q ss_pred CCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCe-------------E
Q psy12838 317 KNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT-------------F 383 (494)
Q Consensus 317 ~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~-------------~ 383 (494)
. ..+|+||||+|||||||+||++++...+. . .++||||+|+.+.|++|.+||+++...+... .
T Consensus 107 ~-~~~~~vlIAgGtGIaP~~s~l~~~~~~~~-~--~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~~s~~~~~~~ 182 (245)
T cd06200 107 D-DGRPLILIGNGTGLAGLRSHLRARARAGR-H--RNWLLFGERQAAHDFFCREELEAWQAAGHLARLDLAFSRDQAQKR 182 (245)
T ss_pred C-CCCCEEEEecCcChHHHHHHHHHHHhccC-C--CeEEEEecCCccccHhHHHHHHHHHHCCCcceEEEEEccCCCCCc
Confidence 5 47899999999999999999999987543 2 2579999999855899999999998754321 4
Q ss_pred EEecccccChhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHHHHhhhhhchHHHHHHHHHHhhccCCCCcchhhhHHhh
Q psy12838 384 YVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQDEEEAKQYATVLIAGNANDMPTAVREVLVK 463 (494)
Q Consensus 384 yVqd~l~~~~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (494)
||++.+.++.+.+.+++. .++.||+|||..+|+++|.++|.+++. +
T Consensus 183 ~v~~~l~~~~~~~~~~~~-~~~~vy~CGp~~~m~~~v~~~l~~~~~-------------------~-------------- 228 (245)
T cd06200 183 YVQDRLRAAADELRAWVA-EGAAIYVCGSLQGMAPGVDAVLDEILG-------------------E-------------- 228 (245)
T ss_pred chHHHHHHhHHHHHHHHH-CCcEEEEECCchhhhHHHHHHHHHHHH-------------------H--------------
Confidence 666666655555555544 368999999932899999999999987 1
Q ss_pred hhhccccCHHHHHHHHHHHHHcCCeeEeec
Q psy12838 464 VITLELQDEEKAKQYVEQMEREGRLQTETW 493 (494)
Q Consensus 464 ~~~~~~~~~~~a~~~~~~~~~~~r~~~d~w 493 (494)
..+++|+++|||.+|+|
T Consensus 229 -------------~~~~~~~~~~r~~~d~~ 245 (245)
T cd06200 229 -------------EAVEALLAAGRYRRDVY 245 (245)
T ss_pred -------------HHHHHHHHCCCeEEecC
Confidence 12789999999999999
No 20
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.97 E-value=9.4e-30 Score=255.50 Aligned_cols=190 Identities=31% Similarity=0.534 Sum_probs=149.2
Q ss_pred ChHHHHHHhCC-CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEe-eCCCccCCCC
Q psy12838 241 PVEYLFELFSP-IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISI-KRGSFVFPKN 318 (494)
Q Consensus 241 ~l~~ll~~lp~-~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~-p~G~F~lp~~ 318 (494)
|+|++....+. ..+|+|||+|+|.+ +.++|+|+.++ .|.+|+||+++++|+.|.+.+ +.|.|.++.
T Consensus 86 pGQ~v~v~~~g~~~~R~YSias~p~~--g~l~l~Vk~~~---------~G~~S~~L~~l~~Gd~v~v~~~~~g~F~~~~- 153 (289)
T cd06201 86 AGDLLGILPPGSDVPRFYSLASSSSD--GFLEICVRKHP---------GGLCSGYLHGLKPGDTIKAFIRPNPSFRPAK- 153 (289)
T ss_pred ccCEEEEecCCCCCCceEecCCCCCC--CeEEEEEEeCC---------CccchhhHhhCCCcCEEEEEeccCCCccCCC-
Confidence 45543332333 35799999999853 78999999763 699999999999999999986 567998864
Q ss_pred CCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCe------------EEEe
Q psy12838 319 EERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT------------FYVQ 386 (494)
Q Consensus 319 ~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~------------~yVq 386 (494)
..+|+||||+|||||||++|+++.... . .++|+||+|+.+.|++|.++|+++.+.+... .|||
T Consensus 154 ~~~~lvlIAgGtGIaP~~s~l~~~~~~----~-~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~~~g~v~ 228 (289)
T cd06201 154 GAAPVILIGAGTGIAPLAGFIRANAAR----R-PMHLYWGGRDPASDFLYEDELDQYLADGRLTQLHTAFSRTPDGAYVQ 228 (289)
T ss_pred CCCCEEEEecCcCHHHHHHHHHhhhcc----C-CEEEEEEecCcccchHHHHHHHHHHHcCCCceEEEEECCCCCcccch
Confidence 478999999999999999999986321 2 2689999999855899999999998765321 4566
Q ss_pred cccccChhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHHHHhhhhhchHHHHHHHHHHhhccCCCCcchhhhHHhhhhh
Q psy12838 387 HVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQDEEEAKQYATVLIAGNANDMPTAVREVLVKVIT 466 (494)
Q Consensus 387 d~l~~~~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (494)
+.+....+.+..++.+ ++.||+||| +.|+++|.+.|.+++. +++ +
T Consensus 229 ~~l~~~~~~l~~~~~~-~~~vyiCGp-~~M~~~v~~~L~~i~~-------------------~~~-~------------- 273 (289)
T cd06201 229 DRLRADAERLRRLIED-GAQIMVCGS-RAMAQGVAAVLEEILA-------------------PQP-L------------- 273 (289)
T ss_pred hHHHHhHHHHHHHHHC-CcEEEEECC-HHHHHHHHHHHHHHHH-------------------HcC-c-------------
Confidence 6555555555555553 789999999 6899999999999998 432 2
Q ss_pred ccccCHHHHHHHHHHHHHcCCeeEeec
Q psy12838 467 LELQDEEKAKQYVEQMEREGRLQTETW 493 (494)
Q Consensus 467 ~~~~~~~~a~~~~~~~~~~~r~~~d~w 493 (494)
-+..|+++|||.+|||
T Consensus 274 -----------~~~~~~~~g~~~~d~y 289 (289)
T cd06201 274 -----------SLDELKLQGRYAEDVY 289 (289)
T ss_pred -----------CHHHHHHCCCEEeecC
Confidence 1788899999999998
No 21
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.91 E-value=3.7e-24 Score=205.77 Aligned_cols=174 Identities=33% Similarity=0.494 Sum_probs=132.9
Q ss_pred cChHHHHHHhCC---CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCCccCC
Q psy12838 240 VPVEYLFELFSP---IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFVFP 316 (494)
Q Consensus 240 ~~l~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~F~lp 316 (494)
.|+|++...++. ..+|+|||+|+|.+. +.++|+|+.++ .|.+|+||.++++|+.|.+.+|.|.|.++
T Consensus 24 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~-~~~~l~vk~~~---------~G~~s~~l~~~~~G~~v~i~gP~G~~~~~ 93 (223)
T cd00322 24 KPGQYVDLHLPGDGRGLRRAYSIASSPDEE-GELELTVKIVP---------GGPFSAWLHDLKPGDEVEVSGPGGDFFLP 93 (223)
T ss_pred CCCcEEEEEecCCCCcceeeeeccCCCCCC-CeEEEEEEEeC---------CCchhhHHhcCCCCCEEEEECCCcccccC
Confidence 467766655553 678999999999753 78999999874 69999999999999999999999998766
Q ss_pred CCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcC-CCeEEE-ecccccC--
Q psy12838 317 KNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN-QLTFYV-QHVMSRH-- 392 (494)
Q Consensus 317 ~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~-~l~~yV-qd~l~~~-- 392 (494)
....+++||||+||||||++++++++..... .. .++|+||+|+. .|++|.++|+++.+.. .++.++ .+.-...
T Consensus 94 ~~~~~~~v~ia~G~Giap~~~~l~~~~~~~~-~~-~v~l~~~~r~~-~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~ 170 (223)
T cd00322 94 LEESGPVVLIAGGIGITPFRSMLRHLAADKP-GG-EITLLYGARTP-ADLLFLDELEELAKEGPNFRLVLALSRESEAKL 170 (223)
T ss_pred cccCCcEEEEecCCchhHHHHHHHHHHhhCC-CC-cEEEEEecCCH-HHhhHHHHHHHHHHhCCCeEEEEEecCCCCCCC
Confidence 5667899999999999999999999987643 22 36899999998 5999999999998743 333221 1110000
Q ss_pred --h------hHHHHh-hccCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 393 --L------PLLQDL-ICSHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 393 --~------~~l~~~-l~~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
. ..+... ....+..+|+||| +.|++++++.|.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~yvCGp-~~m~~~~~~~L~~~ 213 (223)
T cd00322 171 GPGGRIDREAEILALLPDDSGALVYICGP-PAMAKAVREALVSL 213 (223)
T ss_pred cccceeeHHHHHHhhcccccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 0 112222 2234688999999 68999999998764
No 22
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.91 E-value=1.1e-23 Score=204.47 Aligned_cols=177 Identities=22% Similarity=0.342 Sum_probs=133.8
Q ss_pred ccChHHHHHHhCCC-CCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhc-CCCCCeEEEEeeCCCccCC
Q psy12838 239 AVPVEYLFELFSPI-RPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAA-LNPGDSVAISIKRGSFVFP 316 (494)
Q Consensus 239 ~~~l~~ll~~lp~~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~i~~p~G~F~lp 316 (494)
..|+|++...+|.. .+|+|||+|.|.. .+.++|+|+.++ .|.+|+||.+ +++|+.|.|.+|.|.|.++
T Consensus 24 ~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~~~~~vk~~~---------~G~~s~~l~~~~~~g~~v~v~gP~G~~~~~ 93 (232)
T cd06190 24 FLPGQYALLALPGVEGARAYSMANLANA-SGEWEFIIKRKP---------GGAASNALFDNLEPGDELELDGPYGLAYLR 93 (232)
T ss_pred cCCCCEEEEECCCCCcccCccCCcCCCC-CCEEEEEEEEcC---------CCcchHHHhhcCCCCCEEEEECCcccceec
Confidence 35777766667766 7899999999865 389999999863 6899999975 7999999999999988876
Q ss_pred CCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcC-CCeEEE-eccccc---
Q psy12838 317 KNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN-QLTFYV-QHVMSR--- 391 (494)
Q Consensus 317 ~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~-~l~~yV-qd~l~~--- 391 (494)
.+..+++||||+||||||++++++++...+......++|+||+|+. .|++|.++|+++.+.+ .++.++ ...-..
T Consensus 94 ~~~~~~illIagG~GiaP~~~~l~~~~~~~~~~~~~v~l~~~~r~~-~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~ 172 (232)
T cd06190 94 PDEDRDIVCIAGGSGLAPMLSILRGAARSPYLSDRPVDLFYGGRTP-SDLCALDELSALVALGARLRVTPAVSDAGSGSA 172 (232)
T ss_pred CCCCCcEEEEeeCcCHHHHHHHHHHHHhcccCCCCeEEEEEeecCH-HHHhhHHHHHHHHHhCCCEEEEEEeCCCCCCcC
Confidence 5556899999999999999999999987531112346899999998 6899999999998753 333221 111000
Q ss_pred -----C----hhHHHHhhcc--CCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 392 -----H----LPLLQDLICS--HQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 392 -----~----~~~l~~~l~~--~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
. .+.+.+.+.. .+..||+||| +.|++++.+.|.+.
T Consensus 173 ~~~~~~~g~v~~~l~~~~~~~~~~~~vyiCGp-~~m~~~v~~~l~~~ 218 (232)
T cd06190 173 AGWDGPTGFVHEVVEATLGDRLAEFEFYFAGP-PPMVDAVQRMLMIE 218 (232)
T ss_pred CCccCCcCcHHHHHHhhccCCccccEEEEECC-HHHHHHHHHHHHHh
Confidence 0 1233343332 3578999999 68999999888765
No 23
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.91 E-value=1.6e-23 Score=202.45 Aligned_cols=189 Identities=26% Similarity=0.431 Sum_probs=138.3
Q ss_pred CEEeeeccCCCCccccChHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhh-cCCCCCe
Q psy12838 225 TVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLA-ALNPGDS 303 (494)
Q Consensus 225 t~~dvl~~fp~~~~~~~l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~Gd~ 303 (494)
++..+....+......|+|++...++....|+|||+|.+... +.++|+|+.++ .|.+|++|. .+++|+.
T Consensus 12 ~~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~r~ySi~s~~~~~-~~l~~~vk~~~---------~G~~s~~l~~~l~~G~~ 81 (224)
T cd06189 12 DVYRVRLKPPAPLDFLAGQYLDLLLDDGDKRPFSIASAPHED-GEIELHIRAVP---------GGSFSDYVFEELKENGL 81 (224)
T ss_pred ceEEEEEecCCCcccCCCCEEEEEcCCCCceeeecccCCCCC-CeEEEEEEecC---------CCccHHHHHHhccCCCE
Confidence 444444444321223577776666676679999999998653 89999999873 589999886 5999999
Q ss_pred EEEEeeCCCccCCCCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHc-CCCe
Q psy12838 304 VAISIKRGSFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLT 382 (494)
Q Consensus 304 v~i~~p~G~F~lp~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~-~~l~ 382 (494)
|.|.+|.|.|.++.+..+++||||+||||||++++++++...+. .. .++|+||+|+. .+++|.++|+++... .+++
T Consensus 82 v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~~-~~-~v~l~~~~r~~-~~~~~~~~l~~l~~~~~~~~ 158 (224)
T cd06189 82 VRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQGS-KR-PIHLYWGARTE-EDLYLDELLEAWAEAHPNFT 158 (224)
T ss_pred EEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcCC-CC-CEEEEEecCCh-hhccCHHHHHHHHHhCCCeE
Confidence 99999999998876667899999999999999999999987653 22 36899999998 689999999999874 3444
Q ss_pred EE--Eecc---cccChhHHH----Hhh-ccCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 383 FY--VQHV---MSRHLPLLQ----DLI-CSHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 383 ~y--Vqd~---l~~~~~~l~----~~l-~~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
.+ +.+. .......+. +.+ ...+..+|+||| +.|++++.+.|.+.
T Consensus 159 ~~~~~s~~~~~~~g~~g~v~~~l~~~~~~~~~~~v~vCGp-~~m~~~~~~~l~~~ 212 (224)
T cd06189 159 YVPVLSEPEEGWQGRTGLVHEAVLEDFPDLSDFDVYACGS-PEMVYAARDDFVEK 212 (224)
T ss_pred EEEEeCCCCcCCccccccHHHHHHhhccCccccEEEEECC-HHHHHHHHHHHHHc
Confidence 22 1110 000111222 222 223678999999 68999999999764
No 24
>PRK05713 hypothetical protein; Provisional
Probab=99.91 E-value=1e-23 Score=214.04 Aligned_cols=172 Identities=22% Similarity=0.323 Sum_probs=130.0
Q ss_pred cChHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCC-CccCCCC
Q psy12838 240 VPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRG-SFVFPKN 318 (494)
Q Consensus 240 ~~l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G-~F~lp~~ 318 (494)
.|+|++...++....|+|||+|.|.+. +.++|+|+.++ .|.+|.||.++++||.|.+.+|.| .|.++.+
T Consensus 120 ~~GQfv~l~~~~~~~R~ySias~p~~~-~~l~~~I~~~~---------~G~~s~~l~~l~~Gd~v~l~~p~gg~~~~~~~ 189 (312)
T PRK05713 120 RAGQHLVLWTAGGVARPYSLASLPGED-PFLEFHIDCSR---------PGAFCDAARQLQVGDLLRLGELRGGALHYDPD 189 (312)
T ss_pred CCCCEEEEecCCCcccccccCcCCCCC-CeEEEEEEEcC---------CCccchhhhcCCCCCEEEEccCCCCceEecCC
Confidence 466665544565568999999998654 78999998764 699999999999999999999986 6666644
Q ss_pred -CCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHc-CCCeEEEecccccChh-H
Q psy12838 319 -EERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTFYVQHVMSRHLP-L 395 (494)
Q Consensus 319 -~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~-~~l~~yVqd~l~~~~~-~ 395 (494)
..+|+||||+|||||||+|+++++...+. ... ++|+||+|+. .|++|.++|+++.+. .+++... ...+... .
T Consensus 190 ~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~-~~~-v~l~~g~r~~-~d~~~~~el~~l~~~~~~~~~~~--~~~~~~~~~ 264 (312)
T PRK05713 190 WQERPLWLLAAGTGLAPLWGILREALRQGH-QGP-IRLLHLARDS-AGHYLAEPLAALAGRHPQLSVEL--VTAAQLPAA 264 (312)
T ss_pred CCCCcEEEEecCcChhHHHHHHHHHHhcCC-CCc-EEEEEEcCch-HHhhhHHHHHHHHHHCCCcEEEE--EECcchhhh
Confidence 46899999999999999999999887664 333 6899999998 699999999999864 3454211 1111111 1
Q ss_pred HHHhh-ccCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 396 LQDLI-CSHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 396 l~~~l-~~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
+.++. ...+..+|+||| ++|++++.+.|.+.
T Consensus 265 l~~~~~~~~~~~vyiCGp-~~mv~~~~~~L~~~ 296 (312)
T PRK05713 265 LAELRLVSRQTMALLCGS-PASVERFARRLYLA 296 (312)
T ss_pred hhhccCCCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 22221 113468999999 79999999999764
No 25
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.91 E-value=1.9e-23 Score=203.95 Aligned_cols=174 Identities=25% Similarity=0.419 Sum_probs=132.7
Q ss_pred cChHHHHHHhCCC-CCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhh-cCCCCCeEEEEeeCCCccCCC
Q psy12838 240 VPVEYLFELFSPI-RPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLA-ALNPGDSVAISIKRGSFVFPK 317 (494)
Q Consensus 240 ~~l~~ll~~lp~~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~i~~p~G~F~lp~ 317 (494)
.|+|++...++.. ..|+|||+|.+.+. +.++|+|+.++ .|.+|+||. .+++|+.|.|.+|.|.|.++.
T Consensus 37 ~pGQ~v~l~~~~~~~~r~ySi~s~~~~~-~~l~l~i~~~~---------~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~~ 106 (238)
T cd06211 37 QAGQYVNLQAPGYEGTRAFSIASSPSDA-GEIELHIRLVP---------GGIATTYVHKQLKEGDELEISGPYGDFFVRD 106 (238)
T ss_pred CCCCeEEEEcCCCCCccccccCCCCCCC-CEEEEEEEECC---------CCcchhhHhhcCCCCCEEEEECCccceEecC
Confidence 4666655556654 68999999998754 88999999874 699999996 799999999999999998876
Q ss_pred CCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcC-CCeEEE-eccc------
Q psy12838 318 NEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN-QLTFYV-QHVM------ 389 (494)
Q Consensus 318 ~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~-~l~~yV-qd~l------ 389 (494)
+..+++||||+||||||++++++++..++. .. .++|+||+|+. .|++|.++|+++.+.. .++.+. -..-
T Consensus 107 ~~~~~~v~iagG~GiaP~~~~l~~~~~~~~-~~-~v~l~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~ 183 (238)
T cd06211 107 SDQRPIIFIAGGSGLSSPRSMILDLLERGD-TR-KITLFFGARTR-AELYYLDEFEALEKDHPNFKYVPALSREPPESNW 183 (238)
T ss_pred CCCCCEEEEeCCcCHHHHHHHHHHHHhcCC-CC-cEEEEEecCCh-hhhccHHHHHHHHHhCCCeEEEEEECCCCCCcCc
Confidence 556899999999999999999999987654 22 36899999998 6899999999998653 343211 1100
Q ss_pred cc---C-hhHHHHhhc--cCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 390 SR---H-LPLLQDLIC--SHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 390 ~~---~-~~~l~~~l~--~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
.. . .+.+.+.+. ..+..+|+||| +.|++++.+.|.+.
T Consensus 184 ~~~~g~v~~~l~~~~~~~~~~~~vyvCGp-~~m~~~~~~~L~~~ 226 (238)
T cd06211 184 KGFTGFVHDAAKKHFKNDFRGHKAYLCGP-PPMIDACIKTLMQG 226 (238)
T ss_pred ccccCcHHHHHHHhcccccccCEEEEECC-HHHHHHHHHHHHHc
Confidence 00 0 123334432 13578999999 69999999999765
No 26
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.91 E-value=7.6e-24 Score=208.21 Aligned_cols=174 Identities=24% Similarity=0.319 Sum_probs=126.8
Q ss_pred cChHHHHHHhC--C-CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeC-CCccC
Q psy12838 240 VPVEYLFELFS--P-IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKR-GSFVF 315 (494)
Q Consensus 240 ~~l~~ll~~lp--~-~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~-G~F~l 315 (494)
.|+|++...++ . ...|+|||+|+|.. +.++|+|+.++ .|.+|+||+++++||+|.+.+|. |.|.+
T Consensus 32 ~pGQfv~l~~~~~g~~~~R~ySias~p~~--~~l~~~ik~~~---------~G~~S~~L~~l~~Gd~v~i~gp~~g~f~l 100 (248)
T PRK10926 32 TAGQFTKLGLEIDGERVQRAYSYVNAPDN--PDLEFYLVTVP---------EGKLSPRLAALKPGDEVQVVSEAAGFFVL 100 (248)
T ss_pred CCCCEEEEEEecCCcEEEeeecccCCCCC--CeEEEEEEEeC---------CCCcChHHHhCCCCCEEEEecCCCcceEc
Confidence 46666544332 2 34699999999864 68999999874 69999999999999999999986 56777
Q ss_pred CCC-CCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcC--CCeEEEe----cc
Q psy12838 316 PKN-EERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN--QLTFYVQ----HV 388 (494)
Q Consensus 316 p~~-~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~--~l~~yVq----d~ 388 (494)
+.. ..+|+||||+|||||||+||++++...+. .. .++|+||+|+. .|++|.++|+++.+.. .+++++. +.
T Consensus 101 ~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~~-~~-~v~l~~g~r~~-~d~~~~~el~~l~~~~~~~~~v~~~~s~~~~ 177 (248)
T PRK10926 101 DEVPDCETLWMLATGTAIGPYLSILQEGKDLER-FK-NLVLVHAARYA-ADLSYLPLMQELEQRYEGKLRIQTVVSRETA 177 (248)
T ss_pred cCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhCC-CC-cEEEEEeCCcH-HHHHHHHHHHHHHHhCcCCEEEEEEECCCCC
Confidence 643 34799999999999999999999865443 23 36899999998 6999999999997753 4542221 10
Q ss_pred ---cccCh------hHHHHh----hccCCCEEEEeCCCCchHHHHHHHHHHHH
Q psy12838 389 ---MSRHL------PLLQDL----ICSHQATVLIAGNANDMPTAVREVLVETI 428 (494)
Q Consensus 389 ---l~~~~------~~l~~~----l~~~~~~vYvCGp~~~M~~~V~~~L~~i~ 428 (494)
..... ..+.+. +...+..+|+||| +.|++++.+.|.+..
T Consensus 178 ~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp-~~Mv~~~~~~l~~~~ 229 (248)
T PRK10926 178 PGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGN-PQMVRDTQQLLKETR 229 (248)
T ss_pred CCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECC-HHHHHHHHHHHHHhc
Confidence 00000 011111 1123578999999 689999999887643
No 27
>PRK08051 fre FMN reductase; Validated
Probab=99.90 E-value=1.6e-23 Score=203.75 Aligned_cols=175 Identities=22% Similarity=0.352 Sum_probs=130.1
Q ss_pred ccChHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHh-hcCCCCCeEEEEeeCCCccCCC
Q psy12838 239 AVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYL-AALNPGDSVAISIKRGSFVFPK 317 (494)
Q Consensus 239 ~~~l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L-~~l~~Gd~v~i~~p~G~F~lp~ 317 (494)
..|+|++...++....|+|||+|.|... +.++|+|+.++ .|..|.++ .++++|+.|.+.+|.|.|.++.
T Consensus 30 ~~pGQ~v~l~~~~~~~r~ySias~p~~~-~~l~~~v~~~~---------~~~~~~~~~~~l~~G~~v~v~gP~G~~~~~~ 99 (232)
T PRK08051 30 FRAGQYLMVVMGEKDKRPFSIASTPREK-GFIELHIGASE---------LNLYAMAVMERILKDGEIEVDIPHGDAWLRE 99 (232)
T ss_pred cCCCCEEEEEcCCCcceeecccCCCCCC-CcEEEEEEEcC---------CCcchHHHHHHcCCCCEEEEEcCCCceEccC
Confidence 3577776666677778999999999643 78999998763 35545444 6899999999999999988775
Q ss_pred CCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcC-CCeEEEe-----ccccc
Q psy12838 318 NEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN-QLTFYVQ-----HVMSR 391 (494)
Q Consensus 318 ~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~-~l~~yVq-----d~l~~ 391 (494)
+..+|+||||+||||||++++++++...+. ... ++|+||+|+. .|++|.+||+++.+.. .++.+.. +....
T Consensus 100 ~~~~~~vliagG~GiaP~~~~l~~~~~~~~-~~~-v~l~~g~r~~-~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~ 176 (232)
T PRK08051 100 ESERPLLLIAGGTGFSYARSILLTALAQGP-NRP-ITLYWGGREE-DHLYDLDELEALALKHPNLHFVPVVEQPEEGWQG 176 (232)
T ss_pred CCCCcEEEEecCcCcchHHHHHHHHHHhCC-CCc-EEEEEEeccH-HHhhhhHHHHHHHHHCCCcEEEEEeCCCCCCccc
Confidence 556899999999999999999999987654 333 5799999999 6899999999998753 4443321 11100
Q ss_pred Ch----hHHHHhh-ccCCCEEEEeCCCCchHHHHHHHH-HHH
Q psy12838 392 HL----PLLQDLI-CSHQATVLIAGNANDMPTAVREVL-VET 427 (494)
Q Consensus 392 ~~----~~l~~~l-~~~~~~vYvCGp~~~M~~~V~~~L-~~i 427 (494)
.. +.+.+.+ ...+..||+||| ++|+++|.+.| .+.
T Consensus 177 ~~g~v~~~l~~~~~~~~~~~vyicGp-~~m~~~v~~~l~~~~ 217 (232)
T PRK08051 177 KTGTVLTAVMQDFGSLAEYDIYIAGR-FEMAKIARELFCRER 217 (232)
T ss_pred ceeeehHHHHhhccCcccCEEEEECC-HHHHHHHHHHHHHHc
Confidence 01 2222222 223568999999 68999999988 664
No 28
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.90 E-value=2e-23 Score=218.96 Aligned_cols=173 Identities=22% Similarity=0.308 Sum_probs=132.1
Q ss_pred cChHHHHHHhC--C---CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhc-CCCCCeEEEEeeCCCc
Q psy12838 240 VPVEYLFELFS--P---IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAA-LNPGDSVAISIKRGSF 313 (494)
Q Consensus 240 ~~l~~ll~~lp--~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~i~~p~G~F 313 (494)
.|+|++...++ + ..+|+|||+|+|.. +.++|+|+.++ .|.+|+||.+ +++||.|.+.+|.|.|
T Consensus 186 ~pGQ~v~l~~~~~~~~~~~~R~ySias~p~~--~~l~~~Vk~~~---------~G~~S~~L~~~l~~Gd~v~v~gP~G~f 254 (399)
T PRK13289 186 KPGQYLGVRLDPEGEEYQEIRQYSLSDAPNG--KYYRISVKREA---------GGKVSNYLHDHVNVGDVLELAAPAGDF 254 (399)
T ss_pred CCCCeEEEEEecCCccccceeEEEeeeCCCC--CeEEEEEEECC---------CCeehHHHhhcCCCCCEEEEEcCcccc
Confidence 46666554443 2 13599999999864 78999998763 6999999975 9999999999999999
Q ss_pred cCCCCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcC-CCeEE-Eeccc--
Q psy12838 314 VFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN-QLTFY-VQHVM-- 389 (494)
Q Consensus 314 ~lp~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~-~l~~y-Vqd~l-- 389 (494)
.++.+..+|+||||+||||||++||++++...+. .. .++||||+|+. .|++|.++|+++.+.. .++.. +...-
T Consensus 255 ~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~-~~-~v~l~~~~r~~-~~~~~~~eL~~l~~~~~~~~~~~~~s~~~~ 331 (399)
T PRK13289 255 FLDVASDTPVVLISGGVGITPMLSMLETLAAQQP-KR-PVHFIHAARNG-GVHAFRDEVEALAARHPNLKAHTWYREPTE 331 (399)
T ss_pred ccCCCCCCcEEEEecCccHHHHHHHHHHHHhcCC-CC-CEEEEEEeCCh-hhchHHHHHHHHHHhCCCcEEEEEECCCcc
Confidence 9987667899999999999999999999887554 23 36899999999 6899999999998754 44421 11100
Q ss_pred ------------ccChhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 390 ------------SRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 390 ------------~~~~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
+-..+.+.+.+...+..+||||| +.|++++.+.|.+.
T Consensus 332 ~~~~~~~~~~~g~i~~~~l~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~ 380 (399)
T PRK13289 332 QDRAGEDFDSEGLMDLEWLEAWLPDPDADFYFCGP-VPFMQFVAKQLLEL 380 (399)
T ss_pred ccccCCcccccCcccHHHHHhhCCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 00122344444434789999999 79999999998764
No 29
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.90 E-value=2e-23 Score=213.77 Aligned_cols=174 Identities=22% Similarity=0.328 Sum_probs=132.2
Q ss_pred cChHHHHHHhCC--CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhh-cCCCCCeEEEEeeCCCccCC
Q psy12838 240 VPVEYLFELFSP--IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLA-ALNPGDSVAISIKRGSFVFP 316 (494)
Q Consensus 240 ~~l~~ll~~lp~--~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~i~~p~G~F~lp 316 (494)
.|+|++...++. ...|+|||+|.|.+. +.++|+|+.++ .|.+|+||. ++++||.|.+.+|.|.|.++
T Consensus 38 ~pGQfv~l~~~~~~~~~R~ySias~p~~~-~~l~i~Vk~~~---------~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~ 107 (332)
T PRK10684 38 RAGQYALVSIRNSAETLRAYTLSSTPGVS-EFITLTVRRID---------DGVGSQWLTRDVKRGDYLWLSDAMGEFTCD 107 (332)
T ss_pred CCCCEEEEEecCCCEeeeeecccCCCCCC-CcEEEEEEEcC---------CCcchhHHHhcCCCCCEEEEeCCccccccC
Confidence 477765554543 346999999999653 78999999874 699999996 79999999999999999987
Q ss_pred CCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcC-CCeEEEeccc------
Q psy12838 317 KNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN-QLTFYVQHVM------ 389 (494)
Q Consensus 317 ~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~-~l~~yVqd~l------ 389 (494)
....+++||||+|||||||+||++++...+. .. .++|+||+|+. .|++|.+||+++.... .++.++....
T Consensus 108 ~~~~~~~vliAgG~GItP~~sml~~~~~~~~-~~-~v~l~y~~r~~-~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~ 184 (332)
T PRK10684 108 DKAEDKYLLLAAGCGVTPIMSMRRWLLKNRP-QA-DVQVIFNVRTP-QDVIFADEWRQLKQRYPQLNLTLVAENNATEGF 184 (332)
T ss_pred CCCCCcEEEEecCcCcchHHHHHHHHHhcCC-CC-CEEEEEeCCCh-HHhhhHHHHHHHHHHCCCeEEEEEeccCCCCCc
Confidence 6667899999999999999999999877543 23 36899999998 6999999999988753 3332221100
Q ss_pred -cc--ChhHHHHhhcc-CCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 390 -SR--HLPLLQDLICS-HQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 390 -~~--~~~~l~~~l~~-~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
.. ..+.+.+.+.+ .+..+|+||| ++|++++.+.|.+.
T Consensus 185 ~~grl~~~~l~~~~~~~~~~~vyiCGP-~~m~~~v~~~l~~~ 225 (332)
T PRK10684 185 IAGRLTRELLQQAVPDLASRTVMTCGP-APYMDWVEQEVKAL 225 (332)
T ss_pred cccccCHHHHHHhcccccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 00 11233333322 3578999999 69999999999775
No 30
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.90 E-value=2e-23 Score=204.15 Aligned_cols=174 Identities=22% Similarity=0.333 Sum_probs=131.1
Q ss_pred ccChHHHHHHhCC----CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEE-eeCCCc
Q psy12838 239 AVPVEYLFELFSP----IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAIS-IKRGSF 313 (494)
Q Consensus 239 ~~~l~~ll~~lp~----~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~-~p~G~F 313 (494)
..|+|++...++. ...|+|||+|.+.+ +.++|+|++++ .|.+|+||+++++|+.|.+. +|.|.|
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~~~---------~G~~s~~l~~l~~Gd~v~v~~gP~G~f 93 (241)
T cd06195 25 FQAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIILVP---------DGPLTPRLFKLKPGDTIYVGKKPTGFL 93 (241)
T ss_pred cCCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEEec---------CCCCchHHhcCCCCCEEEECcCCCCce
Confidence 3567665554543 25799999999865 78999998874 69999999999999999999 999999
Q ss_pred cCCCC-CCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHc--CCCeE--EEe--
Q psy12838 314 VFPKN-EERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA--NQLTF--YVQ-- 386 (494)
Q Consensus 314 ~lp~~-~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~--~~l~~--yVq-- 386 (494)
.++.. ..+++||||+|||||||+++++++..... .. .++|+||+|+. .|++|.++|+++... ..++. ++.
T Consensus 94 ~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~~-~~-~v~l~~~~r~~-~d~~~~~el~~l~~~~~~~~~~~~~~s~~ 170 (241)
T cd06195 94 TLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWER-FD-KIVLVHGVRYA-EELAYQDEIEALAKQYNGKFRYVPIVSRE 170 (241)
T ss_pred eecCCCCCceEEEEeeccchhhHHHHHHHHHhhCC-CC-cEEEEEccCCH-HHhhhHHHHHHHHhhcCCCEEEEEEECcC
Confidence 88765 46899999999999999999999876443 22 36899999999 689999999999875 23432 121
Q ss_pred -----------cccccChhHHHHhh----ccCCCEEEEeCCCCchHHHHHHHHHHHHh
Q psy12838 387 -----------HVMSRHLPLLQDLI----CSHQATVLIAGNANDMPTAVREVLVETIT 429 (494)
Q Consensus 387 -----------d~l~~~~~~l~~~l----~~~~~~vYvCGp~~~M~~~V~~~L~~i~~ 429 (494)
+.+. .+.+.+.+ ...+..||+||| ++|++++.+.|.+...
T Consensus 171 ~~~~~~~g~v~~~l~--~~~l~~~~~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~G~ 225 (241)
T cd06195 171 KENGALTGRIPDLIE--SGELEEHAGLPLDPETSHVMLCGN-PQMIDDTQELLKEKGF 225 (241)
T ss_pred CccCCCceEhHHhhh--hchhhHhhCCCCCcccCEEEEeCC-HHHHHHHHHHHHHcCC
Confidence 1110 01122221 123578999999 6899999999877543
No 31
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.90 E-value=5.3e-23 Score=198.43 Aligned_cols=189 Identities=20% Similarity=0.304 Sum_probs=137.4
Q ss_pred CEEeeeccCCCCccccChHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhc-CCCCCe
Q psy12838 225 TVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAA-LNPGDS 303 (494)
Q Consensus 225 t~~dvl~~fp~~~~~~~l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~Gd~ 303 (494)
.+..+....+......|+|++...++....|+|||+|+|.+. +.++|+|+.++ .|.+|.||.+ +++|+.
T Consensus 10 ~~~~i~l~~~~~~~~~pGQ~v~l~~~~~~~r~ySi~s~~~~~-~~~~~~i~~~~---------~G~~s~~l~~~~~~G~~ 79 (222)
T cd06194 10 DVLRVRLEPDRPLPYLPGQYVNLRRAGGLARSYSPTSLPDGD-NELEFHIRRKP---------NGAFSGWLGEEARPGHA 79 (222)
T ss_pred CEEEEEEecCCCCCcCCCCEEEEEcCCCCceeeecCCCCCCC-CEEEEEEEecc---------CCccchHHHhccCCCCE
Confidence 344444444332223467766555676778999999999764 78999998763 5999999987 799999
Q ss_pred EEEEeeCCCccCCC-CCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHc-CCC
Q psy12838 304 VAISIKRGSFVFPK-NEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQL 381 (494)
Q Consensus 304 v~i~~p~G~F~lp~-~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~-~~l 381 (494)
|.|.+|.|.|.+.. ...+++||||+||||||++++++++...+. .. .++|+||+|+. .+++|.+||+++.+. ..+
T Consensus 80 v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~-~~-~v~l~~~~r~~-~~~~~~~el~~l~~~~~~~ 156 (222)
T cd06194 80 LRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQGH-QG-EIRLVHGARDP-DDLYLHPALLWLAREHPNF 156 (222)
T ss_pred EEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcCC-Cc-cEEEEEecCCh-hhccCHHHHHHHHHHCCCe
Confidence 99999999887653 456899999999999999999999886554 23 36899999998 589999999999873 344
Q ss_pred eEEE-eccccc-----ChhHHHHhh--ccCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 382 TFYV-QHVMSR-----HLPLLQDLI--CSHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 382 ~~yV-qd~l~~-----~~~~l~~~l--~~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
+.+. .+.-.. ....+.+.+ ...+..+|+||| +.|++++++.|.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vyicGp-~~m~~~~~~~L~~~ 209 (222)
T cd06194 157 RYIPCVSEGSQGDPRVRAGRIAAHLPPLTRDDVVYLCGA-PSMVNAVRRRAFLA 209 (222)
T ss_pred EEEEEEccCCCCCcccccchhhhhhccccCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 4222 111100 112233322 123688999999 68999999998764
No 32
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.90 E-value=4e-23 Score=200.17 Aligned_cols=172 Identities=20% Similarity=0.333 Sum_probs=129.9
Q ss_pred cChHHHHHHhCCC-CCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHh-hcCCCCCeEEEEeeCCCccCCC
Q psy12838 240 VPVEYLFELFSPI-RPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYL-AALNPGDSVAISIKRGSFVFPK 317 (494)
Q Consensus 240 ~~l~~ll~~lp~~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L-~~l~~Gd~v~i~~p~G~F~lp~ 317 (494)
.|+|++...++.. ..|+|||+|+|.+. +.++|+|+.++ .|.+|+|| ..+++||.|.|.+|.|.|.++.
T Consensus 29 ~pGQ~~~l~~~~~~~~r~ysi~s~~~~~-~~l~~~vk~~~---------~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~~ 98 (227)
T cd06213 29 KAGQYAELTLPGLPAARSYSFANAPQGD-GQLSFHIRKVP---------GGAFSGWLFGADRTGERLTVRGPFGDFWLRP 98 (227)
T ss_pred CCCCEEEEEeCCCCcccccccCCCCCCC-CEEEEEEEECC---------CCcchHHHHhcCCCCCEEEEeCCCcceEeCC
Confidence 4677665555544 58999999998753 78999998763 69999999 5699999999999999998864
Q ss_pred CCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcC--CCeE--EEeccc----
Q psy12838 318 NEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN--QLTF--YVQHVM---- 389 (494)
Q Consensus 318 ~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~--~l~~--yVqd~l---- 389 (494)
..+++||||+||||||++++++++...+. .. .++++||+|+. .|++|.++|+++.... .++. ++.+.-
T Consensus 99 -~~~~~lliagG~GiaP~~~~~~~~~~~~~-~~-~i~l~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~ 174 (227)
T cd06213 99 -GDAPILCIAGGSGLAPILAILEQARAAGT-KR-DVTLLFGARTQ-RDLYALDEIAAIAARWRGRFRFIPVLSEEPADSS 174 (227)
T ss_pred -CCCcEEEEecccchhHHHHHHHHHHhcCC-CC-cEEEEEeeCCH-HHhccHHHHHHHHHhccCCeEEEEEecCCCCCCC
Confidence 35799999999999999999999987654 23 36899999998 6899999999988642 3321 121100
Q ss_pred -ccC----hhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 390 -SRH----LPLLQDLICSHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 390 -~~~----~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
... .+.+.+.+ ..+..+|+||| +.|++++++.|.+.
T Consensus 175 ~~g~~g~v~~~l~~~~-~~~~~v~~CGp-~~~~~~~~~~l~~~ 215 (227)
T cd06213 175 WKGARGLVTEHIAEVL-LAATEAYLCGP-PAMIDAAIAVLRAL 215 (227)
T ss_pred ccCCcccHHHHHHhhc-cCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 001 12233333 34689999999 68999999888764
No 33
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.90 E-value=3.3e-23 Score=207.53 Aligned_cols=170 Identities=24% Similarity=0.424 Sum_probs=124.4
Q ss_pred CcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCCccCCCCCCCCEEEEecCCcch
Q psy12838 254 PRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFVFPKNEERPLIMVGPGTGIA 333 (494)
Q Consensus 254 pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~F~lp~~~~~piImIa~GtGIA 333 (494)
.|+|||+|+|.+. +.++|+|+.........+...|.+|+||.++++|+.|.|.+|.|.|.++. ..+|+||||+|||||
T Consensus 86 ~R~ySias~p~~~-~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l~~-~~~~~vlIAgGtGIt 163 (283)
T cd06188 86 SRAYSLANYPAEE-GELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGDKVTASGPFGEFFIKD-TDREMVFIGGGAGMA 163 (283)
T ss_pred ccccCcCCCCCCC-CeEEEEEEEeccCCccCCCCCceehhHHhcCCCCCEEEEECccccccccC-CCCcEEEEEecccHh
Confidence 5999999999753 79999999754211100123699999999999999999999999998864 468999999999999
Q ss_pred hhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcC-CCeEEEe--ccc-----ccC----hhHHH-Hhh
Q psy12838 334 PFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN-QLTFYVQ--HVM-----SRH----LPLLQ-DLI 400 (494)
Q Consensus 334 Pf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~-~l~~yVq--d~l-----~~~----~~~l~-~~l 400 (494)
||++|++++...+. ....++||||+|+. .|++|.++|+++.+.. .++.++. +.- ... .+.+. .++
T Consensus 164 P~~s~l~~~~~~~~-~~~~v~l~~g~r~~-~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~v~~~~~~~~~ 241 (283)
T cd06188 164 PLRSHIFHLLKTLK-SKRKISFWYGARSL-KELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGFIHQVLLENYL 241 (283)
T ss_pred HHHHHHHHHHhcCC-CCceEEEEEecCCH-HHhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCcceeecHHHHHHHh
Confidence 99999999876543 22236899999998 6899999999998643 3433221 100 000 01122 222
Q ss_pred c----cCCCEEEEeCCCCchHHHHHHHHHHHH
Q psy12838 401 C----SHQATVLIAGNANDMPTAVREVLVETI 428 (494)
Q Consensus 401 ~----~~~~~vYvCGp~~~M~~~V~~~L~~i~ 428 (494)
. ..+..||+||| +.|++++.++|.+..
T Consensus 242 ~~~~~~~~~~vyiCGP-~~m~~~~~~~l~~~G 272 (283)
T cd06188 242 KKHPAPEDIEFYLCGP-PPMNSAVIKMLDDLG 272 (283)
T ss_pred ccCCCCCCeEEEEECC-HHHHHHHHHHHHHcC
Confidence 1 23567999999 689999999987753
No 34
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.90 E-value=3.8e-23 Score=198.72 Aligned_cols=171 Identities=25% Similarity=0.381 Sum_probs=131.1
Q ss_pred cChHHHHHHhC---CCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhh-cCCCCCeEEEEeeCCCccC
Q psy12838 240 VPVEYLFELFS---PIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLA-ALNPGDSVAISIKRGSFVF 315 (494)
Q Consensus 240 ~~l~~ll~~lp---~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~i~~p~G~F~l 315 (494)
.|+|++...++ ....|+|||+|.|... +.++|+|+.+ |.+|.+|. ++++|+.|.+.+|.|.|.+
T Consensus 24 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~-~~l~l~vk~~-----------G~~t~~l~~~l~~G~~v~i~gP~G~~~~ 91 (216)
T cd06198 24 RAGQFAFLRFDASGWEEPHPFTISSAPDPD-GRLRFTIKAL-----------GDYTRRLAERLKPGTRVTVEGPYGRFTF 91 (216)
T ss_pred CCCCEEEEEeCCCCCCCCCCcEEecCCCCC-CeEEEEEEeC-----------ChHHHHHHHhCCCCCEEEEECCCCCCcc
Confidence 46676555455 3578999999998754 7999999863 78999998 8999999999999999998
Q ss_pred CCCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCeEEEeccccc---C
Q psy12838 316 PKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTFYVQHVMSR---H 392 (494)
Q Consensus 316 p~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~~yVqd~l~~---~ 392 (494)
+.. .+++||||+||||||++++++++...+. . ..++|+||+|+. .|++|.++|+++.....++.++...-.. .
T Consensus 92 ~~~-~~~~vlia~GtGiap~~~~l~~~~~~~~-~-~~v~l~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 167 (216)
T cd06198 92 DDR-RARQIWIAGGIGITPFLALLEALAARGD-A-RPVTLFYCVRDP-EDAVFLDELRALAAAAGVVLHVIDSPSDGRLT 167 (216)
T ss_pred ccc-CceEEEEccccCHHHHHHHHHHHHhcCC-C-ceEEEEEEECCH-HHhhhHHHHHHHHHhcCeEEEEEeCCCCcccc
Confidence 765 7899999999999999999999887653 2 236899999999 5899999999998765444333221111 1
Q ss_pred hhHHH-Hhh-ccCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 393 LPLLQ-DLI-CSHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 393 ~~~l~-~~l-~~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
...+. +.. ...+..+|+||| +.|++++++.|.+.
T Consensus 168 ~~~~~~~~~~~~~~~~vyicGp-~~m~~~v~~~l~~~ 203 (216)
T cd06198 168 LEQLVRALVPDLADADVWFCGP-PGMADALEKGLRAL 203 (216)
T ss_pred hhhhhhhcCCCcCCCeEEEECc-HHHHHHHHHHHHHc
Confidence 11221 222 224678999999 68999999998764
No 35
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.90 E-value=2.2e-23 Score=200.51 Aligned_cols=182 Identities=18% Similarity=0.286 Sum_probs=131.9
Q ss_pred CEEeeeccCCCCccccChHHHHHHhCC----CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCC
Q psy12838 225 TVLEMLTDFPHATRAVPVEYLFELFSP----IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNP 300 (494)
Q Consensus 225 t~~dvl~~fp~~~~~~~l~~ll~~lp~----~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~ 300 (494)
++..+....|......|+|++...++. ...|+|||+|.|.+ +.++|+|+.++ ..|..|.+|.++++
T Consensus 14 ~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~--~~l~~~vk~~~--------~~g~~s~~l~~l~~ 83 (218)
T cd06196 14 DVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPED--DVLEFVIKSYP--------DHDGVTEQLGRLQP 83 (218)
T ss_pred CeEEEEEcCCCcCCCCCCCEEEEEeeCCCCCccccccccccCCCC--CeEEEEEEEcC--------CCCcHhHHHHhCCC
Confidence 344444444432223466665544432 35899999999865 79999999864 13778999999999
Q ss_pred CCeEEEEeeCCCccCCCCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCC
Q psy12838 301 GDSVAISIKRGSFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQ 380 (494)
Q Consensus 301 Gd~v~i~~p~G~F~lp~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~ 380 (494)
|+.|.+.+|.|.|.++ +|+||||+||||||++++++++...+. .. .++|+||+|+. .|++|.++|+++... .
T Consensus 84 G~~v~i~gP~G~~~~~----~~~vlia~GtGiaP~~s~l~~~~~~~~-~~-~v~l~~~~r~~-~~~~~~~el~~l~~~-~ 155 (218)
T cd06196 84 GDTLLIEDPWGAIEYK----GPGVFIAGGAGITPFIAILRDLAAKGK-LE-GNTLIFANKTE-KDIILKDELEKMLGL-K 155 (218)
T ss_pred CCEEEEECCccceEec----CceEEEecCCCcChHHHHHHHHHhCCC-Cc-eEEEEEecCCH-HHHhhHHHHHHhhcc-e
Confidence 9999999999998753 589999999999999999999987554 22 35799999998 689999999998532 1
Q ss_pred CeEEEe---------cccccChhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 381 LTFYVQ---------HVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 381 l~~yVq---------d~l~~~~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
+..++. ..+ ..+.+.+++...++.||+||| +.|++++.+.|.+.
T Consensus 156 ~~~~~s~~~~~~~~~g~~--~~~~l~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~ 208 (218)
T cd06196 156 FINVVTDEKDPGYAHGRI--DKAFLKQHVTDFNQHFYVCGP-PPMEEAINGALKEL 208 (218)
T ss_pred EEEEEcCCCCCCeeeeEE--CHHHHHHhcCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 111221 111 123444554444578999999 68999999988765
No 36
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.90 E-value=4.5e-23 Score=200.82 Aligned_cols=174 Identities=23% Similarity=0.365 Sum_probs=131.9
Q ss_pred cChHHHHHHhCC-CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhc-CCCCCeEEEEeeCCCccCCC
Q psy12838 240 VPVEYLFELFSP-IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAA-LNPGDSVAISIKRGSFVFPK 317 (494)
Q Consensus 240 ~~l~~ll~~lp~-~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~i~~p~G~F~lp~ 317 (494)
.|+|++...+|. ..+|+|||+|.|.+. +.++|+|+.++ .|.+|+||.+ +++|+.|.|.+|.|.|.++.
T Consensus 36 ~pGQ~v~l~~~~~~~~R~ySi~s~~~~~-~~l~~~i~~~~---------~G~~s~~l~~~~~~Gd~v~i~gP~G~f~l~~ 105 (236)
T cd06210 36 VPGQFVEIEIPGTDTRRSYSLANTPNWD-GRLEFLIRLLP---------GGAFSTYLETRAKVGQRLNLRGPLGAFGLRE 105 (236)
T ss_pred CCCCEEEEEcCCCccceecccCCCCCCC-CEEEEEEEEcC---------CCccchhhhhCcCCCCEEEEecCcceeeecC
Confidence 466666554554 458999999998754 78999999863 5999999986 99999999999999999876
Q ss_pred CCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHc-CCCeEE-Eecc----ccc
Q psy12838 318 NEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTFY-VQHV----MSR 391 (494)
Q Consensus 318 ~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~-~~l~~y-Vqd~----l~~ 391 (494)
+..+++||||+||||||++++++++...+. .. .++||||+|+. .|++|.++|+++.+. ..+++. +... ...
T Consensus 106 ~~~~~~vliagGtGiaP~~~~l~~~~~~~~-~~-~v~l~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~ 182 (236)
T cd06210 106 NGLRPRWFVAGGTGLAPLLSMLRRMAEWGE-PQ-EARLFFGVNTE-AELFYLDELKRLADSLPNLTVRICVWRPGGEWEG 182 (236)
T ss_pred CCCccEEEEccCcchhHHHHHHHHHHhcCC-Cc-eEEEEEecCCH-HHhhhHHHHHHHHHhCCCeEEEEEEcCCCCCcCC
Confidence 556899999999999999999999887654 22 36899999998 689999999999865 344422 1111 000
Q ss_pred C----hhHHHHhhcc--CCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 392 H----LPLLQDLICS--HQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 392 ~----~~~l~~~l~~--~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
. .+.+.+.+.. .+..+|+||| +.|++++++.|.+.
T Consensus 183 ~~g~~~~~l~~~l~~~~~~~~vyicGp-~~m~~~~~~~l~~~ 223 (236)
T cd06210 183 YRGTVVDALREDLASSDAKPDIYLCGP-PGMVDAAFAAAREA 223 (236)
T ss_pred ccCcHHHHHHHhhcccCCCcEEEEeCC-HHHHHHHHHHHHHc
Confidence 1 1233333322 2468999999 69999999988764
No 37
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.90 E-value=3.5e-23 Score=212.54 Aligned_cols=190 Identities=19% Similarity=0.347 Sum_probs=138.4
Q ss_pred CCEEeeeccCCCC--ccccChHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhh-cCCC
Q psy12838 224 RTVLEMLTDFPHA--TRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLA-ALNP 300 (494)
Q Consensus 224 ~t~~dvl~~fp~~--~~~~~l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~ 300 (494)
.++..+....|.. ....|+|++...+|....|+|||+|+|.+. +.++|+|+.++ .|.+|+||. .+++
T Consensus 115 ~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~R~ySias~p~~~-~~l~~~ik~~~---------~G~~s~~l~~~l~~ 184 (339)
T PRK07609 115 GDVMRLKLRLPATERLQYLAGQYIEFILKDGKRRSYSIANAPHSG-GPLELHIRHMP---------GGVFTDHVFGALKE 184 (339)
T ss_pred CcEEEEEEEcCCCCCCccCCCCeEEEECCCCceeeeecCCCCCCC-CEEEEEEEecC---------CCccHHHHHHhccC
Confidence 3455554444421 113466666555666678999999999753 79999999874 699999996 7999
Q ss_pred CCeEEEEeeCCCccCCCCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHc-C
Q psy12838 301 GDSVAISIKRGSFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-N 379 (494)
Q Consensus 301 Gd~v~i~~p~G~F~lp~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~-~ 379 (494)
|+.|.+.+|.|.|.++....+|+||||+|||||||++|++++...+. .. .++||||+|+. .|+++.++|+++.+. .
T Consensus 185 G~~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~~-~~-~i~l~~g~r~~-~dl~~~e~l~~~~~~~~ 261 (339)
T PRK07609 185 RDILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKGI-QR-PVTLYWGARRP-EDLYLSALAEQWAEELP 261 (339)
T ss_pred CCEEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcCC-CC-cEEEEEecCCh-HHhccHHHHHHHHHhCC
Confidence 99999999999999876667899999999999999999999987654 33 36899999998 588889999888764 3
Q ss_pred CCeEE-Eecc------cccCh----hHHHHhh-ccCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 380 QLTFY-VQHV------MSRHL----PLLQDLI-CSHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 380 ~l~~y-Vqd~------l~~~~----~~l~~~l-~~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
.++.+ +-.. ..... +.+.+.+ ...+..+|+||| +.|++++.+.|.+.
T Consensus 262 ~~~~~~~~s~~~~~~~~~g~~G~v~~~~~~~~~~~~~~~vy~CGp-~~m~~~~~~~l~~~ 320 (339)
T PRK07609 262 NFRYVPVVSDALDDDAWTGRTGFVHQAVLEDFPDLSGHQVYACGS-PVMVYAARDDFVAA 320 (339)
T ss_pred CeEEEEEecCCCCCCCccCccCcHHHHHHhhcccccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 44421 1111 00011 2222222 123578999999 68999999988764
No 38
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.90 E-value=5.1e-23 Score=211.37 Aligned_cols=173 Identities=24% Similarity=0.385 Sum_probs=130.8
Q ss_pred cChHHHHHHhCCC-CCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhh-cCCCCCeEEEEeeCCCccCCC
Q psy12838 240 VPVEYLFELFSPI-RPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLA-ALNPGDSVAISIKRGSFVFPK 317 (494)
Q Consensus 240 ~~l~~ll~~lp~~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~i~~p~G~F~lp~ 317 (494)
.|+|++...++.. .+|+|||+|+|.+. +.++|+|+.++ .|.+|+||. ++++|+.|.|.+|.|.|.++.
T Consensus 138 ~pGQ~v~l~~~~~~~~R~ySias~p~~~-~~l~~~ik~~~---------~G~~s~~L~~~l~~G~~v~i~gP~G~f~l~~ 207 (340)
T PRK11872 138 LPGQYARLQIPGTDDWRSYSFANRPNAT-NQLQFLIRLLP---------DGVMSNYLRERCQVGDEILFEAPLGAFYLRE 207 (340)
T ss_pred CCCCEEEEEeCCCCceeecccCCCCCCC-CeEEEEEEECC---------CCcchhhHhhCCCCCCEEEEEcCcceeEeCC
Confidence 4666665555654 47999999999653 89999999874 699999996 699999999999999998864
Q ss_pred CCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHc-CCCeEEEe-cccc----c
Q psy12838 318 NEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTFYVQ-HVMS----R 391 (494)
Q Consensus 318 ~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~-~~l~~yVq-d~l~----~ 391 (494)
..+|+||||+|||||||+++++++...+. .. .++||||+|+. .|++|.++|+++.+. .+++.+.. ..-. .
T Consensus 208 -~~~~~vliagGtGiaP~~s~l~~~~~~~~-~~-~v~l~~g~r~~-~dl~~~~el~~~~~~~~~~~~~~~~s~~~~~~~g 283 (340)
T PRK11872 208 -VERPLVFVAGGTGLSAFLGMLDELAEQGC-SP-PVHLYYGVRHA-ADLCELQRLAAYAERLPNFRYHPVVSKASADWQG 283 (340)
T ss_pred -CCCcEEEEeCCcCccHHHHHHHHHHHcCC-CC-cEEEEEecCCh-HHhccHHHHHHHHHHCCCcEEEEEEeCCCCcCCC
Confidence 36899999999999999999999987654 33 36899999999 699999999999864 34442211 0000 0
Q ss_pred Ch----hHHH-HhhccCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 392 HL----PLLQ-DLICSHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 392 ~~----~~l~-~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
.. +.+. ..+...+..||+||| +.|++++.+.|.+.
T Consensus 284 ~~g~v~~~l~~~~l~~~~~~vy~CGp-~~mv~~~~~~L~~~ 323 (340)
T PRK11872 284 KRGYIHEHFDKAQLRDQAFDMYLCGP-PPMVEAVKQWLDEQ 323 (340)
T ss_pred ceeeccHHHHHhhcCcCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 00 1122 123323468999999 79999999999765
No 39
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.89 E-value=1.2e-22 Score=196.07 Aligned_cols=174 Identities=26% Similarity=0.370 Sum_probs=131.0
Q ss_pred cChHHHHHHhCCC--CCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhc-CCCCCeEEEEeeCCCccCC
Q psy12838 240 VPVEYLFELFSPI--RPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAA-LNPGDSVAISIKRGSFVFP 316 (494)
Q Consensus 240 ~~l~~ll~~lp~~--~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~i~~p~G~F~lp 316 (494)
.|+|++...+|.. ..|+|||+|.|.+. +.++|+|+..+ .|.+|+||.+ +++|+.|.|.+|.|.|.++
T Consensus 25 ~pGq~i~l~~~~~~~~~r~ysi~s~~~~~-~~~~~~i~~~~---------~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~ 94 (224)
T cd06187 25 WAGQYVNVTVPGRPRTWRAYSPANPPNED-GEIEFHVRAVP---------GGRVSNALHDELKVGDRVRLSGPYGTFYLR 94 (224)
T ss_pred CCCceEEEEcCCCCCcceeccccCCCCCC-CEEEEEEEeCC---------CCcchHHHhhcCccCCEEEEeCCccceEec
Confidence 4666655555543 47999999998763 78999998753 5999999986 9999999999999999887
Q ss_pred CCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcC-CCeE--EEecccc---
Q psy12838 317 KNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN-QLTF--YVQHVMS--- 390 (494)
Q Consensus 317 ~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~-~l~~--yVqd~l~--- 390 (494)
.+..+++||||+|||||||+++++++..++. .. .++|+|++|+. .|++|.++|+++.... .++. ++.+.-.
T Consensus 95 ~~~~~~~lliagG~GI~p~~sll~~~~~~~~-~~-~v~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 171 (224)
T cd06187 95 RDHDRPVLCIAGGTGLAPLRAIVEDALRRGE-PR-PVHLFFGARTE-RDLYDLEGLLALAARHPWLRVVPVVSHEEGAWT 171 (224)
T ss_pred CCCCCCEEEEecCcCHHHHHHHHHHHHhcCC-CC-CEEEEEecCCh-hhhcChHHHHHHHHhCCCeEEEEEeCCCCCccC
Confidence 6556899999999999999999999987653 22 36899999998 6899999999987653 3332 2221100
Q ss_pred cC----hhHHHHhhc-cCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 391 RH----LPLLQDLIC-SHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 391 ~~----~~~l~~~l~-~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
.. .+.+.+... ..++.||+||| +.|++++++.|.+.
T Consensus 172 ~~~g~~~~~~~~~~~~~~~~~v~vcGp-~~~~~~v~~~l~~~ 212 (224)
T cd06187 172 GRRGLVTDVVGRDGPDWADHDIYICGP-PAMVDATVDALLAR 212 (224)
T ss_pred CCcccHHHHHHHhccccccCEEEEECC-HHHHHHHHHHHHHc
Confidence 01 122222222 23678999999 68999999998764
No 40
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.89 E-value=8.3e-23 Score=201.42 Aligned_cols=174 Identities=23% Similarity=0.403 Sum_probs=131.8
Q ss_pred ccChHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCC-ccCCC
Q psy12838 239 AVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGS-FVFPK 317 (494)
Q Consensus 239 ~~~l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~-F~lp~ 317 (494)
..|+|++...+|....|+|||+|+|.++ +.++|+|+. .|.+|+||.++++|++|.+.+|.|. |.++.
T Consensus 28 ~~pGQ~i~l~~~~~~~~pySi~s~~~~~-~~l~~~Ik~-----------~G~~S~~L~~l~~G~~v~i~gP~G~~f~~~~ 95 (253)
T cd06221 28 FKPGQFVMLSLPGVGEAPISISSDPTRR-GPLELTIRR-----------VGRVTEALHELKPGDTVGLRGPFGNGFPVEE 95 (253)
T ss_pred cCCCCEEEEEcCCCCccceEecCCCCCC-CeEEEEEEe-----------CChhhHHHHcCCCCCEEEEECCcCCCccccc
Confidence 3577776655665556999999999753 889999985 3889999999999999999999997 66554
Q ss_pred CCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCeEE-Eeccccc----C
Q psy12838 318 NEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTFY-VQHVMSR----H 392 (494)
Q Consensus 318 ~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~~y-Vqd~l~~----~ 392 (494)
...+++||||+||||||++++++++..... ....++|+|++|+. .|++|.++|+++.....++++ +.+.-.+ .
T Consensus 96 ~~~~~iv~IA~G~GitP~ls~l~~~~~~~~-~~~~i~Li~~~r~~-~~~~~~~~L~~l~~~~~~~~~~~~s~~~~~~~~~ 173 (253)
T cd06221 96 MKGKDLLLVAGGLGLAPLRSLINYILDNRE-DYGKVTLLYGARTP-EDLLFKEELKEWAKRSDVEVILTVDRAEEGWTGN 173 (253)
T ss_pred ccCCeEEEEccccchhHHHHHHHHHHhccc-cCCcEEEEEecCCh-HHcchHHHHHHHHhcCCeEEEEEeCCCCCCccCC
Confidence 356899999999999999999999987643 22346899999999 689999999999886555432 2111110 0
Q ss_pred ----hhHHHHhhc-cCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 393 ----LPLLQDLIC-SHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 393 ----~~~l~~~l~-~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
.+.+.+... ..+..||+||| +.|++++.+.|.+.
T Consensus 174 ~g~v~~~l~~~~~~~~~~~vyicGp-~~mv~~~~~~L~~~ 212 (253)
T cd06221 174 VGLVTDLLPELTLDPDNTVAIVCGP-PIMMRFVAKELLKL 212 (253)
T ss_pred ccccchhHHhcCCCcCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 122332222 14678999999 79999999999765
No 41
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.89 E-value=4.4e-23 Score=199.90 Aligned_cols=172 Identities=26% Similarity=0.412 Sum_probs=129.3
Q ss_pred cChHHHHHHhCCC-CCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhc-CCCCCeEEEEeeCCCccCCC
Q psy12838 240 VPVEYLFELFSPI-RPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAA-LNPGDSVAISIKRGSFVFPK 317 (494)
Q Consensus 240 ~~l~~ll~~lp~~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~i~~p~G~F~lp~ 317 (494)
.|+|++...++.. ..|+|||+|.|.+ +.++|+|+.++ .|.+|+||.+ +++|+.|.|.+|.|.|.++.
T Consensus 32 ~pGQ~v~l~~~~~~~~r~ysi~s~~~~--~~i~~~i~~~~---------~G~~s~~l~~~l~~G~~v~v~gP~G~~~~~~ 100 (228)
T cd06209 32 LPGQYVNLQVPGTDETRSYSFSSAPGD--PRLEFLIRLLP---------GGAMSSYLRDRAQPGDRLTLTGPLGSFYLRE 100 (228)
T ss_pred CCCCEEEEEeCCCCcccccccccCCCC--CeEEEEEEEcC---------CCcchhhHHhccCCCCEEEEECCcccceecC
Confidence 4666655555654 5899999999875 78999999864 6999999987 99999999999999988764
Q ss_pred CCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcC-CCe--EEEecccc--cC
Q psy12838 318 NEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN-QLT--FYVQHVMS--RH 392 (494)
Q Consensus 318 ~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~-~l~--~yVqd~l~--~~ 392 (494)
. .+++||||+||||||++++++++...+. .. .++|+||+|+. .|++|.++|+++.+.. .++ .++...-. ..
T Consensus 101 ~-~~~~vlia~GtGIaP~~~ll~~~~~~~~-~~-~v~l~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~ 176 (228)
T cd06209 101 V-KRPLLMLAGGTGLAPFLSMLDVLAEDGS-AH-PVHLVYGVTRD-ADLVELDRLEALAERLPGFSFRTVVADPDSWHPR 176 (228)
T ss_pred C-CCeEEEEEcccCHhHHHHHHHHHHhcCC-CC-cEEEEEecCCH-HHhccHHHHHHHHHhCCCeEEEEEEcCCCccCCC
Confidence 4 5899999999999999999999887653 22 36899999998 6899999999998643 333 22221000 00
Q ss_pred ---h-hHHHHh-hccCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 393 ---L-PLLQDL-ICSHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 393 ---~-~~l~~~-l~~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
. +.+.+. +...+..+|+||| +.|++++++.|.+.
T Consensus 177 ~g~v~~~~~~~~~~~~~~~v~icGp-~~m~~~~~~~l~~~ 215 (228)
T cd06209 177 KGYVTDHLEAEDLNDGDVDVYLCGP-PPMVDAVRSWLDEQ 215 (228)
T ss_pred cCCccHHHHHhhccCCCcEEEEeCC-HHHHHHHHHHHHHc
Confidence 1 112221 2333578999999 69999999999764
No 42
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.89 E-value=1.3e-22 Score=198.88 Aligned_cols=173 Identities=25% Similarity=0.418 Sum_probs=131.2
Q ss_pred cChHHHHHHhC--C---CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhc-CCCCCeEEEEeeCCCc
Q psy12838 240 VPVEYLFELFS--P---IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAA-LNPGDSVAISIKRGSF 313 (494)
Q Consensus 240 ~~l~~ll~~lp--~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~i~~p~G~F 313 (494)
.|+|++...++ . ...|+|||+|.|.. +.++|+|+.++ .|.+|+||.+ +++||+|.|.+|.|.|
T Consensus 38 ~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~l~~~ik~~~---------~G~~s~~l~~~~~~Gd~v~i~gP~G~~ 106 (247)
T cd06184 38 LPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG--DYYRISVKREP---------GGLVSNYLHDNVKVGDVLEVSAPAGDF 106 (247)
T ss_pred CCCCEEEEEEecCCCCCceeEEeEeccCCCC--CeEEEEEEEcC---------CCcchHHHHhcCCCCCEEEEEcCCCce
Confidence 46666544442 2 46799999999865 58999998763 5999999987 9999999999999999
Q ss_pred cCCCCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHc-CCCeE--EEecccc
Q psy12838 314 VFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTF--YVQHVMS 390 (494)
Q Consensus 314 ~lp~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~-~~l~~--yVqd~l~ 390 (494)
.++.+..+++||||+||||||++++++++...+. .. .++|+||+|+. .+.+|.++|+++.+. ..++. ++.+...
T Consensus 107 ~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~~-~~-~i~l~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~ 183 (247)
T cd06184 107 VLDEASDRPLVLISAGVGITPMLSMLEALAAEGP-GR-PVTFIHAARNS-AVHAFRDELEELAARLPNLKLHVFYSEPEA 183 (247)
T ss_pred ECCCCCCCcEEEEeccccHhHHHHHHHHHHhcCC-CC-cEEEEEEcCch-hhHHHHHHHHHHHhhCCCeEEEEEECCCCc
Confidence 9886557899999999999999999999987543 22 36899999998 578899999999875 34442 2221100
Q ss_pred ----------c--ChhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 391 ----------R--HLPLLQDLICSHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 391 ----------~--~~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
. ..+.+.+.+...+..||+||| +.|++++++.|.+.
T Consensus 184 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~v~icGp-~~m~~~v~~~l~~~ 231 (247)
T cd06184 184 GDREEDYDHAGRIDLALLRELLLPADADFYLCGP-VPFMQAVREGLKAL 231 (247)
T ss_pred ccccccccccCccCHHHHhhccCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 0 112333323335789999999 68999999999764
No 43
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.89 E-value=8.6e-23 Score=205.15 Aligned_cols=173 Identities=21% Similarity=0.307 Sum_probs=128.5
Q ss_pred cChHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCC-ccCCCC
Q psy12838 240 VPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGS-FVFPKN 318 (494)
Q Consensus 240 ~~l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~-F~lp~~ 318 (494)
.|+|++...+|....|+|||+|+|.+. +.++|+|+. .|.+|.||.++++|+.|.|.+|.|. |.++..
T Consensus 39 ~pGQ~v~l~~~~~~~~pySias~p~~~-~~l~l~Ik~-----------~G~~S~~L~~l~~Gd~v~v~gP~G~~f~~~~~ 106 (289)
T PRK08345 39 KPGQFVQVTIPGVGEVPISICSSPTRK-GFFELCIRR-----------AGRVTTVIHRLKEGDIVGVRGPYGNGFPVDEM 106 (289)
T ss_pred CCCCEEEEEcCCCCceeeEecCCCCCC-CEEEEEEEe-----------CChHHHHHHhCCCCCEEEEeCCCCCCCCcccc
Confidence 467776555666567999999998653 789999986 3899999999999999999999997 666544
Q ss_pred CCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHc-CCCeEEEe-ccccc-----
Q psy12838 319 EERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTFYVQ-HVMSR----- 391 (494)
Q Consensus 319 ~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~-~~l~~yVq-d~l~~----- 391 (494)
..+|+||||+|||||||++|++++...+. ....++|+||+|+. .|++|.+||+++.+. ..++.++. ..-.+
T Consensus 107 ~~~~~llIAgGtGIaP~~s~l~~~l~~~~-~~~~v~l~~~~r~~-~d~~~~deL~~l~~~~~~~~~~~~~s~~~~~~~~~ 184 (289)
T PRK08345 107 EGMDLLLIAGGLGMAPLRSVLLYAMDNRW-KYGNITLIYGAKYY-EDLLFYDELIKDLAEAENVKIIQSVTRDPEWPGCH 184 (289)
T ss_pred cCceEEEEecccchhHHHHHHHHHHhcCC-CCCcEEEEEecCCH-HHhhHHHHHHHHHhcCCCEEEEEEecCCCCCcCcc
Confidence 45799999999999999999999887652 12246899999998 699999999998654 33442221 10000
Q ss_pred ----------ChhHHHHhh-----ccCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 392 ----------HLPLLQDLI-----CSHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 392 ----------~~~~l~~~l-----~~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
....+.+++ ...+..+|+||| +.|++++.+.|.+.
T Consensus 185 ~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~vyiCGP-~~m~~~v~~~L~~~ 234 (289)
T PRK08345 185 GLPQGFIERVCKGVVTDLFREANTDPKNTYAAICGP-PVMYKFVFKELINR 234 (289)
T ss_pred ccccccccccccCchhhhhhhcCCCccccEEEEECC-HHHHHHHHHHHHHc
Confidence 011122222 123468999999 79999999999775
No 44
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.89 E-value=1.5e-22 Score=212.92 Aligned_cols=171 Identities=23% Similarity=0.412 Sum_probs=127.1
Q ss_pred CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCCccCCCCCCCCEEEEecCCc
Q psy12838 252 IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFVFPKNEERPLIMVGPGTG 331 (494)
Q Consensus 252 ~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~F~lp~~~~~piImIa~GtG 331 (494)
...|+|||+|.|.+. +.++|+|+.+.+....++...|.+|+||.++++||.|.|.+|.|.|.++. ..+|+||||+|||
T Consensus 208 ~~~R~ySias~p~~~-~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~-~~~~ivlIAgGtG 285 (409)
T PRK05464 208 PVIRAYSMANYPEEK-GIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGDKVTISGPFGEFFAKD-TDAEMVFIGGGAG 285 (409)
T ss_pred ceeeeeccCCCCCCC-CeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCCCEEEEEccccCcEecC-CCceEEEEEeccC
Confidence 457999999999763 78999999875443333445799999999999999999999999998763 5689999999999
Q ss_pred chhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHc-CCCeEEEe-cc------cccCh----hHHH-H
Q psy12838 332 IAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTFYVQ-HV------MSRHL----PLLQ-D 398 (494)
Q Consensus 332 IAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~-~~l~~yVq-d~------l~~~~----~~l~-~ 398 (494)
||||+|++++.+.... ....++||||+|+. .|++|.++|+++... .+++.++. .. ..... +.+. .
T Consensus 286 IaP~~sml~~~l~~~~-~~~~v~L~~g~r~~-~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~l~~~ 363 (409)
T PRK05464 286 MAPMRSHIFDQLKRLK-SKRKISFWYGARSL-REMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGFIHNVLYEN 363 (409)
T ss_pred hhHHHHHHHHHHhCCC-CCceEEEEEecCCH-HHhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCccceeCHHHHHh
Confidence 9999999998876533 22346899999999 689999999998764 34443221 10 00000 1121 1
Q ss_pred hh----ccCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 399 LI----CSHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 399 ~l----~~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
++ ...+..||+||| +.|++++.+.|.+.
T Consensus 364 ~l~~~~~~~~~~vyiCGP-~~m~~av~~~L~~~ 395 (409)
T PRK05464 364 YLKDHEAPEDCEYYMCGP-PMMNAAVIKMLKDL 395 (409)
T ss_pred hhhhcCCCCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 22 123578999999 68999999988764
No 45
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.89 E-value=6.6e-23 Score=203.24 Aligned_cols=171 Identities=18% Similarity=0.302 Sum_probs=128.9
Q ss_pred cChHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCC-ccCCCC
Q psy12838 240 VPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGS-FVFPKN 318 (494)
Q Consensus 240 ~~l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~-F~lp~~ 318 (494)
.|+|++...+|...+|+|||++.+ .+.++|+|+. .|.+|+||.++++|+.|.|.+|.|. |.++..
T Consensus 34 ~pGQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik~-----------~G~~S~~L~~l~~Gd~v~v~gP~G~~f~~~~~ 99 (263)
T PRK08221 34 KPGQFFEVSLPKVGEAPISVSDYG---DGYIDLTIRR-----------VGKVTDEIFNLKEGDKLFLRGPYGNGFPVDTY 99 (263)
T ss_pred CCCceEEEEeCCCCcceeeccCCC---CCEEEEEEEe-----------CCchhhHHHhCCCCCEEEEECCCCCCcccCcc
Confidence 477776655676667999999975 2789999985 3899999999999999999999996 887765
Q ss_pred CCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCeEEEecc---cccCh--
Q psy12838 319 EERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTFYVQHV---MSRHL-- 393 (494)
Q Consensus 319 ~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~~yVqd~---l~~~~-- 393 (494)
..+|+||||+|||||||+|+++++...+. ....++|+||+|+. +|++|.++|+++.....+...+.+. .....
T Consensus 100 ~~~~~llIAgGtGItP~~sil~~~~~~~~-~~~~v~L~~g~r~~-~~l~~~~el~~~~~~~~~~~~~~~~~~~~~~~~G~ 177 (263)
T PRK08221 100 KGKELIVVAGGTGVAPVKGLMRYFYENPQ-EIKSLDLILGFKNP-DDILFKEDLKRWREKINLILTLDEGEEGYRGNVGL 177 (263)
T ss_pred CCccEEEEcccccHHHHHHHHHHHHhCcc-cCceEEEEEecCCH-HHhhHHHHHHHHhhcCcEEEEecCCCCCCccCccc
Confidence 56899999999999999999999876543 22246899999999 6999999999998754332222211 00001
Q ss_pred --hHHHHh-hcc-CCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 394 --PLLQDL-ICS-HQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 394 --~~l~~~-l~~-~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
+.+.+. +.+ .+..+|+||| +.|++++.+.|.+.
T Consensus 178 v~~~l~~~~~~~~~~~~vylCGp-~~mv~~~~~~L~~~ 214 (263)
T PRK08221 178 VTKYIPELTLKDIDNMQVIVVGP-PIMMKFTVLEFLKR 214 (263)
T ss_pred cChhhHhccCCCcCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 122222 111 3678999999 79999999999765
No 46
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.89 E-value=7e-23 Score=215.13 Aligned_cols=171 Identities=23% Similarity=0.415 Sum_probs=125.1
Q ss_pred CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCCccCCCCCCCCEEEEecCCc
Q psy12838 252 IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFVFPKNEERPLIMVGPGTG 331 (494)
Q Consensus 252 ~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~F~lp~~~~~piImIa~GtG 331 (494)
...|+|||+|+|.+. +.++|+|+.+.+.....+...|.+|.||.++++||.|.+.+|.|.|.+.. ..+|+||||+|||
T Consensus 204 ~~~R~ySias~p~~~-~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l~~-~~~~lvlIAgGtG 281 (405)
T TIGR01941 204 ETVRAYSMANYPAEK-GIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGDKVTISGPFGEFFAKD-TDAEMVFIGGGAG 281 (405)
T ss_pred ccceeecCCCCCCCC-CeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCcCEEEEEeccCCCeecC-CCCCEEEEecCcC
Confidence 456999999999764 89999999863322112234699999999999999999999999998764 4689999999999
Q ss_pred chhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcC-CCeEEEe-cc------cccC----hhHHH-H
Q psy12838 332 IAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN-QLTFYVQ-HV------MSRH----LPLLQ-D 398 (494)
Q Consensus 332 IAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~-~l~~yVq-d~------l~~~----~~~l~-~ 398 (494)
||||++|+++...... ....++||||+|+. +|++|.++|+++.... +++.++. +. .... .+.+. +
T Consensus 282 IaP~lsmi~~~l~~~~-~~~~v~l~~g~R~~-~dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~l~~~ 359 (405)
T TIGR01941 282 MAPMRSHIFDQLKRLK-SKRKISFWYGARSL-REMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGFIHNVLYEN 359 (405)
T ss_pred cchHHHHHHHHHhcCC-CCCeEEEEEecCCH-HHHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCccceeCHHHHHh
Confidence 9999999998776433 22236899999998 6899999999987643 4432221 10 0000 01111 1
Q ss_pred hhc----cCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 399 LIC----SHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 399 ~l~----~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
++. ..++.||+||| +.|++++.+.|.+.
T Consensus 360 ~l~~~~~~~~~~vylCGP-~~m~~av~~~L~~~ 391 (405)
T TIGR01941 360 YLKDHDAPEDCEFYMCGP-PMMNAAVIKMLEDL 391 (405)
T ss_pred hhcccCCCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 121 23578999999 68999999988764
No 47
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.89 E-value=2.1e-22 Score=195.30 Aligned_cols=174 Identities=25% Similarity=0.385 Sum_probs=130.3
Q ss_pred cChHHHHHHhC---CCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhh-cCCCCCeEEEEeeCCCccC
Q psy12838 240 VPVEYLFELFS---PIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLA-ALNPGDSVAISIKRGSFVF 315 (494)
Q Consensus 240 ~~l~~ll~~lp---~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~i~~p~G~F~l 315 (494)
.|+|++...++ ....|+|||+|.|.+. +.++|+|+..+ .|.+|.||. ++++|+.|.|.+|.|.|.+
T Consensus 29 ~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~-~~l~~~vk~~~---------~G~~s~~l~~~~~~G~~v~i~gP~G~f~~ 98 (231)
T cd06215 29 KPGQFLTLELEIDGETVYRAYTLSSSPSRP-DSLSITVKRVP---------GGLVSNWLHDNLKVGDELWASGPAGEFTL 98 (231)
T ss_pred CCCCeEEEEEecCCCeEEEeeecccCCCCC-CcEEEEEEEcC---------CCcchHHHHhcCCCCCEEEEEcCcceeEe
Confidence 46666544444 2347999999998653 67999999863 589999996 7999999999999999988
Q ss_pred CCCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHc-CCCe--EEEecccc--
Q psy12838 316 PKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLT--FYVQHVMS-- 390 (494)
Q Consensus 316 p~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~-~~l~--~yVqd~l~-- 390 (494)
+....+++||||+||||||+++++++....+. .. .++|||++|+. .+++|.++|+++.+. ..++ .++...-.
T Consensus 99 ~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~-~~-~v~l~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 175 (231)
T cd06215 99 IDHPADKLLLLSAGSGITPMMSMARWLLDTRP-DA-DIVFIHSARSP-ADIIFADELEELARRHPNFRLHLILEQPAPGA 175 (231)
T ss_pred CCCCCCcEEEEecCcCcchHHHHHHHHHhcCC-CC-cEEEEEecCCh-hhhhHHHHHHHHHHHCCCeEEEEEEccCCCCc
Confidence 75547899999999999999999999887554 23 35899999998 689999999999874 3343 22221000
Q ss_pred -----c--ChhHHHHhhcc-CCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 391 -----R--HLPLLQDLICS-HQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 391 -----~--~~~~l~~~l~~-~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
. ..+.+.+.+.+ .+..||+||| +.|++++++.|.+.
T Consensus 176 ~~~~~g~~~~~~l~~~~~~~~~~~v~icGp-~~m~~~~~~~l~~~ 219 (231)
T cd06215 176 WGGYRGRLNAELLALLVPDLKERTVFVCGP-AGFMKAVKSLLAEL 219 (231)
T ss_pred ccccCCcCCHHHHHHhcCCccCCeEEEECC-HHHHHHHHHHHHHc
Confidence 0 11233333332 2468999999 78999999988764
No 48
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.89 E-value=6.9e-23 Score=201.16 Aligned_cols=168 Identities=22% Similarity=0.377 Sum_probs=124.0
Q ss_pred cChHHHHHHhCC----CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCC-cc
Q psy12838 240 VPVEYLFELFSP----IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGS-FV 314 (494)
Q Consensus 240 ~~l~~ll~~lp~----~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~-F~ 314 (494)
.|+|++...+|. ...|+|||+|.+..+ +.++|+|+.. |.+|+||.++++|++|.|.+|.|. |.
T Consensus 26 ~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~-~~l~l~v~~~-----------G~~s~~l~~l~~Gd~v~i~gP~G~~~~ 93 (246)
T cd06218 26 KPGQFVMLRVPDGSDPLLRRPISIHDVDPEE-GTITLLYKVV-----------GKGTRLLSELKAGDELDVLGPLGNGFD 93 (246)
T ss_pred CCCcEEEEEeCCCCCCcCCCceEeeeccCCC-CEEEEEEEEE-----------CcchHHHhcCCCCCEEEEEecCCCCcC
Confidence 455655444442 468999999988543 7899999864 778999999999999999999995 77
Q ss_pred CCCCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCeEEEecccccC--
Q psy12838 315 FPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTFYVQHVMSRH-- 392 (494)
Q Consensus 315 lp~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~~yVqd~l~~~-- 392 (494)
++. ..+++||||+||||||++++++++...+. .++|||++|+. .|.+|.++|+++... +..+..+.....
T Consensus 94 ~~~-~~~~~vlIagGtGIaP~~s~l~~~~~~~~----~v~l~~~~r~~-~d~~~~~eL~~l~~~--~~~~~~~~~~~~~g 165 (246)
T cd06218 94 LPD-DDGKVLLVGGGIGIAPLLFLAKQLAERGI----KVTVLLGFRSA-DDLFLVEEFEALGAE--VYVATDDGSAGTKG 165 (246)
T ss_pred CCC-CCCcEEEEecccCHHHHHHHHHHHHhcCC----ceEEEEEccch-hhhhhHHHHHhhCCc--EEEEcCCCCCCcce
Confidence 764 47899999999999999999999887332 36899999999 689999999988532 111110100001
Q ss_pred --hhHHHHhhcc-CCCEEEEeCCCCchHHHHHHHHHHHH
Q psy12838 393 --LPLLQDLICS-HQATVLIAGNANDMPTAVREVLVETI 428 (494)
Q Consensus 393 --~~~l~~~l~~-~~~~vYvCGp~~~M~~~V~~~L~~i~ 428 (494)
.+.+.+...+ .+..||+||| +.|++++++.|.+..
T Consensus 166 ~v~~~l~~~~~~~~~~~vyiCGp-~~mv~~~~~~L~~~G 203 (246)
T cd06218 166 FVTDLLKELLAEARPDVVYACGP-EPMLKAVAELAAERG 203 (246)
T ss_pred ehHHHHHHHhhccCCCEEEEECC-HHHHHHHHHHHHhcC
Confidence 1122222221 3689999999 699999999997753
No 49
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.89 E-value=9.8e-23 Score=201.29 Aligned_cols=172 Identities=26% Similarity=0.354 Sum_probs=132.6
Q ss_pred cChHHHHHHhCC---CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhh-cCCCCCeEEEEeeCCCccC
Q psy12838 240 VPVEYLFELFSP---IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLA-ALNPGDSVAISIKRGSFVF 315 (494)
Q Consensus 240 ~~l~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~i~~p~G~F~l 315 (494)
-|+|++...++. ...|.|||+|+|.+. +.+.|+|++.+ .|..|+||+ ++++||+|.|..|.|.|.+
T Consensus 36 ~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~-~~~~isVk~~~---------~G~~S~~Lh~~lk~Gd~l~v~~P~G~F~l 105 (266)
T COG1018 36 EPGQYITVGLPNGGEPLLRAYSLSSAPDED-SLYRISVKRED---------GGGGSNWLHDHLKVGDTLEVSAPAGDFVL 105 (266)
T ss_pred CCCCeEEEEecCCCceeeEEEEeccCCCCC-ceEEEEEEEeC---------CCcccHHHHhcCCCCCEEEEecCCCCccC
Confidence 466666555553 378999999999874 68999999874 599999998 8999999999999999999
Q ss_pred CCCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCC----CeEEEe-cccc
Q psy12838 316 PKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQ----LTFYVQ-HVMS 390 (494)
Q Consensus 316 p~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~----l~~yVq-d~l~ 390 (494)
+.....|++|||+|+|||||+||+++....+. . .+.++|++|+. .+..|++| +.+..... +..|+. +.+.
T Consensus 106 ~~~~~~~~llla~G~GITP~lSml~~~~~~~~-~--~v~l~h~~R~~-~~~af~de-~~l~~~~~~~~~~~~~~~~~~~~ 180 (266)
T COG1018 106 DDLPERKLLLLAGGIGITPFLSMLRTLLDRGP-A--DVVLVHAARTP-ADLAFRDE-LELAAELPNALLLGLYTERGKLQ 180 (266)
T ss_pred CCCCCCcEEEEeccccHhHHHHHHHHHHHhCC-C--CEEEEEecCCh-hhcchhhH-HHHHhhCCCCeeEEEEEecCCcc
Confidence 98667799999999999999999999888664 2 25799999999 69999998 77776443 224543 1111
Q ss_pred c--ChhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 391 R--HLPLLQDLICSHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 391 ~--~~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
. ....+.......+..+|+||| .+|+++|+..|.++
T Consensus 181 g~~~~~~l~~~~~~~~r~~y~CGp-~~fm~av~~~l~~~ 218 (266)
T COG1018 181 GRIDVSRLLSAAPDGGREVYLCGP-GPFMQAVRLALEAL 218 (266)
T ss_pred ccccHHHHhccCCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 1 112222222322389999999 58999999999665
No 50
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.89 E-value=3.2e-22 Score=194.36 Aligned_cols=174 Identities=22% Similarity=0.403 Sum_probs=131.6
Q ss_pred cChHHHHHHhCCC-CCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhc-CCCCCeEEEEeeCCCccCCC
Q psy12838 240 VPVEYLFELFSPI-RPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAA-LNPGDSVAISIKRGSFVFPK 317 (494)
Q Consensus 240 ~~l~~ll~~lp~~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~i~~p~G~F~lp~ 317 (494)
.|+|++...+|.. ..|+|||+|.|.+. +.++|+|+.++ .|.+|+||.+ +++|++|.+.+|.|.|.++.
T Consensus 31 ~pGQ~v~l~~~~~~~~r~ySi~s~~~~~-~~l~l~vk~~~---------~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~~ 100 (232)
T cd06212 31 FAGQYVDITVPGTEETRSFSMANTPADP-GRLEFIIKKYP---------GGLFSSFLDDGLAVGDPVTVTGPYGTCTLRE 100 (232)
T ss_pred CCCCeEEEEcCCCCcccccccCCCCCCC-CEEEEEEEECC---------CCchhhHHhhcCCCCCEEEEEcCcccceecC
Confidence 4777665555543 68999999999764 88999999863 6999999985 99999999999999998876
Q ss_pred CCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcC-CCeEE-Eecccc-----
Q psy12838 318 NEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN-QLTFY-VQHVMS----- 390 (494)
Q Consensus 318 ~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~-~l~~y-Vqd~l~----- 390 (494)
...+++||||+||||||++++++++...+. .. .++|+||+|+. .+++|.++|+++.+.. .++.. +-+...
T Consensus 101 ~~~~~~l~iagG~Giap~~~~l~~~~~~~~-~~-~v~l~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~ 177 (232)
T cd06212 101 SRDRPIVLIGGGSGMAPLLSLLRDMAASGS-DR-PVRFFYGARTA-RDLFYLEEIAALGEKIPDFTFIPALSESPDDEGW 177 (232)
T ss_pred CCCCcEEEEecCcchhHHHHHHHHHHhcCC-CC-cEEEEEeccch-HHhccHHHHHHHHHhCCCEEEEEEECCCCCCCCC
Confidence 557899999999999999999999987654 33 36899999998 6899999999988643 33311 111100
Q ss_pred -cCh----hHHHHhhcc-CCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 391 -RHL----PLLQDLICS-HQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 391 -~~~----~~l~~~l~~-~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
... +.+.+.+.+ .+..||+||| +.|++++.+.|.+.
T Consensus 178 ~~~~g~~~~~~~~~~~~~~~~~v~~CGp-~~~~~~v~~~l~~~ 219 (232)
T cd06212 178 SGETGLVTEVVQRNEATLAGCDVYLCGP-PPMIDAALPVLEMS 219 (232)
T ss_pred cCCcccHHHHHHhhccCccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 011 122223222 3678999999 68999999988765
No 51
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.88 E-value=1.6e-22 Score=196.35 Aligned_cols=173 Identities=25% Similarity=0.376 Sum_probs=130.0
Q ss_pred cChHHHHHHhC---CCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhh-cCCCCCeEEEEeeCCCccC
Q psy12838 240 VPVEYLFELFS---PIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLA-ALNPGDSVAISIKRGSFVF 315 (494)
Q Consensus 240 ~~l~~ll~~lp---~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~i~~p~G~F~l 315 (494)
.|+|++...++ ...+|+|||+|.+. .+.++|+|+.++ .|.+|+||. ++++|+.|.|.+|.|.|.+
T Consensus 29 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~~---------~G~~s~~l~~~~~~Gd~v~i~gP~G~f~l 97 (231)
T cd06191 29 RPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRVP---------GGRVSNYLREHIQPGMTVEVMGPQGHFVY 97 (231)
T ss_pred CCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEECC---------CCccchHHHhcCCCCCEEEEeCCccceEe
Confidence 46776544443 23579999999986 388999999864 599999997 6999999999999999998
Q ss_pred CCCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHc-CCCeEE-Eeccc----
Q psy12838 316 PKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTFY-VQHVM---- 389 (494)
Q Consensus 316 p~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~-~~l~~y-Vqd~l---- 389 (494)
+....+++||||+||||||++++++++..... .. .++|+||+|+. .|++|.+||+++.+. ..+++. +-..-
T Consensus 98 ~~~~~~~~lliagG~Gitp~~s~~~~~~~~~~-~~-~v~l~~~~r~~-~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~ 174 (231)
T cd06191 98 QPQPPGRYLLVAAGSGITPLMAMIRATLQTAP-ES-DFTLIHSARTP-ADMIFAQELRELADKPQRLRLLCIFTRETLDS 174 (231)
T ss_pred CCCCCCcEEEEecCccHhHHHHHHHHHHhcCC-CC-CEEEEEecCCH-HHHhHHHHHHHHHHhCCCeEEEEEECCCCCCc
Confidence 76567899999999999999999999886543 22 36899999998 689999999999874 344421 11110
Q ss_pred --ccC----hhHHHH-hhcc-CCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 390 --SRH----LPLLQD-LICS-HQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 390 --~~~----~~~l~~-~l~~-~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
... .+.+.+ ++.. .++.||+||| +.|++++++.|.+.
T Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~~~~vyicGp-~~mv~~~~~~l~~~ 219 (231)
T cd06191 175 DLLHGRIDGEQSLGAALIPDRLEREAFICGP-AGMMDAVETALKEL 219 (231)
T ss_pred cccCCcccccHHHHHHhCccccCCeEEEECC-HHHHHHHHHHHHHc
Confidence 000 122333 2222 2578999999 68999999998654
No 52
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.88 E-value=1.1e-22 Score=201.34 Aligned_cols=171 Identities=17% Similarity=0.300 Sum_probs=128.6
Q ss_pred cChHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCC-ccCCCC
Q psy12838 240 VPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGS-FVFPKN 318 (494)
Q Consensus 240 ~~l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~-F~lp~~ 318 (494)
.|+|++...+|...+|+|||+|.+ .+.++|+|+. .|.+|.+|.++++||.|.|.+|.|. |.++..
T Consensus 32 ~pGQ~v~l~~~~~~~~pySi~~~~---~~~l~~~Vk~-----------~G~~S~~L~~l~~Gd~v~i~gP~G~~f~~~~~ 97 (261)
T TIGR02911 32 KPGQFFEVSLPKYGEAPISVSGIG---EGYIDLTIRR-----------VGKVTDEVFTLKEGDNLFLRGPYGNGFDVDNY 97 (261)
T ss_pred CCCcEEEEEecCCCccceecCCCC---CCeEEEEEEe-----------CchhhHHHHcCCCCCEEEEecCCCCCcccCcc
Confidence 477776666676678999999853 2789999985 3899999999999999999999997 877765
Q ss_pred CCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCeEEEecc---cccC---
Q psy12838 319 EERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTFYVQHV---MSRH--- 392 (494)
Q Consensus 319 ~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~~yVqd~---l~~~--- 392 (494)
..+|+||||+||||||++++++++..++. ....++|+||+|+. +|++|.++|+++.....+...+.+. ....
T Consensus 98 ~~~~~llIAgGtGIaP~~sil~~l~~~~~-~~~~v~L~~~~r~~-~~~~~~~eL~~l~~~~~~~~~~~~~~~~~~~~~g~ 175 (261)
T TIGR02911 98 KHKELVVVAGGTGVAPVKGVVEYFVKNPK-EIKSLNLILGFKTP-DDILFKEDIAEWKGNINLTLTLDEAEEDYKGNIGL 175 (261)
T ss_pred CCceEEEEecccCcHHHHHHHHHHHhCcc-cCceEEEEEecCCH-HHhhHHHHHHHHHhcCcEEEEEcCCCCCCcCCeec
Confidence 56899999999999999999999876543 22246899999998 6999999999998754443222110 0000
Q ss_pred -hhHHHHh-h-ccCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 393 -LPLLQDL-I-CSHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 393 -~~~l~~~-l-~~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
.+.+.+. + ...+..+|+||| +.|++++++.|.+.
T Consensus 176 v~~~l~~~~~~~~~~~~v~lCGp-~~mv~~~~~~L~~~ 212 (261)
T TIGR02911 176 VTKYIPELTLKDIEEVQAIVVGP-PIMMKFTVQELLKK 212 (261)
T ss_pred cCHhHHhccCCCccceEEEEECC-HHHHHHHHHHHHHc
Confidence 0122221 1 113578999999 79999999998775
No 53
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.88 E-value=4.5e-22 Score=190.41 Aligned_cols=169 Identities=19% Similarity=0.248 Sum_probs=129.2
Q ss_pred cChHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhh-cCCCCCeEEEEeeCCCccCCCC
Q psy12838 240 VPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLA-ALNPGDSVAISIKRGSFVFPKN 318 (494)
Q Consensus 240 ~~l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~i~~p~G~F~lp~~ 318 (494)
.|+|++...+|....|+|||+|.|.+. +.++|+|+.++ ..+.+|.||. .+++||.|.+.+|.|.|.++.+
T Consensus 27 ~pGQ~~~l~~~~~~~r~ySi~s~~~~~-~~l~~~v~~~~--------~g~~~s~~l~~~~~~Gd~v~i~gP~g~f~~~~~ 97 (211)
T cd06185 27 EPGAHIDVHLPNGLVRQYSLCGDPADR-DRYRIAVLREP--------ASRGGSRYMHELLRVGDELEVSAPRNLFPLDEA 97 (211)
T ss_pred CCCceEEEEcCCCCceeeeccCCCCCC-CEEEEEEEecc--------CCCchHHHHHhcCCCCCEEEEcCCccCCcCCCC
Confidence 467776666666778999999998753 89999999763 1234899996 5899999999999999988653
Q ss_pred CCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCeEEEecccccChhHHHH
Q psy12838 319 EERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTFYVQHVMSRHLPLLQD 398 (494)
Q Consensus 319 ~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~~yVqd~l~~~~~~l~~ 398 (494)
.+++||||+||||||+++++++....+. .++|+||+|+. ++.+|.++|+++. ...++.++.+. .....+.+
T Consensus 98 -~~~~v~ia~GtGiap~~~il~~~~~~~~----~v~l~~~~r~~-~~~~~~~~l~~~~-~~~~~~~~~~~--~~~~~~~~ 168 (211)
T cd06185 98 -ARRHLLIAGGIGITPILSMARALAARGA----DFELHYAGRSR-EDAAFLDELAALP-GDRVHLHFDDE--GGRLDLAA 168 (211)
T ss_pred -CCcEEEEeccchHhHHHHHHHHHHhCCC----CEEEEEEeCCC-cchhHHHHHhhhc-CCcEEEEECCC--CCccCHHH
Confidence 6899999999999999999999876332 36899999998 5788999999887 33444433221 11223444
Q ss_pred hhcc--CCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 399 LICS--HQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 399 ~l~~--~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
++.. .+..+|+||| +.|++++++.|.+.
T Consensus 169 ~~~~~~~~~~vyicGp-~~m~~~~~~~l~~~ 198 (211)
T cd06185 169 LLAAPPAGTHVYVCGP-EGMMDAVRAAAAAL 198 (211)
T ss_pred HhccCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 4422 3678999999 68999999999764
No 54
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.88 E-value=3.7e-22 Score=193.66 Aligned_cols=175 Identities=23% Similarity=0.369 Sum_probs=131.8
Q ss_pred cChHHHHHHhCC---CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCCccCC
Q psy12838 240 VPVEYLFELFSP---IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFVFP 316 (494)
Q Consensus 240 ~~l~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~F~lp 316 (494)
.|+|++...+|. ...|+|||+|.+... +.++|+|+.++ .|.+|.||+++++|++|.+.+|.|.|.+.
T Consensus 30 ~pGq~v~l~~~~~~~~~~R~ysi~s~~~~~-~~~~~~v~~~~---------~G~~s~~l~~~~~G~~v~i~gP~G~~~~~ 99 (234)
T cd06183 30 PVGQHVELKAPDDGEQVVRPYTPISPDDDK-GYFDLLIKIYP---------GGKMSQYLHSLKPGDTVEIRGPFGKFEYK 99 (234)
T ss_pred CcccEEEEEecCCCcccccccccccCCCcC-CEEEEEEEECC---------CCcchhHHhcCCCCCEEEEECCccceeec
Confidence 466665555553 568999999998753 68999999863 59999999999999999999999999887
Q ss_pred CCCC-CCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHc--CCCeE-EEeccccc-
Q psy12838 317 KNEE-RPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA--NQLTF-YVQHVMSR- 391 (494)
Q Consensus 317 ~~~~-~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~--~~l~~-yVqd~l~~- 391 (494)
.+.. +++||||+||||||++++++++..+.. ....++|+|++|+. ++.+|.++|+++... ..+++ ++...-..
T Consensus 100 ~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~-~~~~i~l~~~~r~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 177 (234)
T cd06183 100 PNGKVKHIGMIAGGTGITPMLQLIRAILKDPE-DKTKISLLYANRTE-EDILLREELDELAKKHPDRFKVHYVLSRPPEG 177 (234)
T ss_pred CCCCccEEEEEcCCcchhHHHHHHHHHHhCcC-cCcEEEEEEecCCH-HHhhhHHHHHHHHHhCcccEEEEEEEcCCCcC
Confidence 6544 899999999999999999999987532 22346899999998 689999999999875 34442 22211100
Q ss_pred --------ChhHHHHhhc---cCCCEEEEeCCCCchHH-HHHHHHHHH
Q psy12838 392 --------HLPLLQDLIC---SHQATVLIAGNANDMPT-AVREVLVET 427 (494)
Q Consensus 392 --------~~~~l~~~l~---~~~~~vYvCGp~~~M~~-~V~~~L~~i 427 (494)
....+...+. ..+..+|+||| +.|++ ++++.|.+.
T Consensus 178 ~~~~~g~~~~~~l~~~~~~~~~~~~~~~icGp-~~~~~~~~~~~l~~~ 224 (234)
T cd06183 178 WKGGVGFITKEMIKEHLPPPPSEDTLVLVCGP-PPMIEGAVKGLLKEL 224 (234)
T ss_pred CccccceECHHHHHHhCCCCCCCCeEEEEECC-HHHHHHHHHHHHHHc
Confidence 1122333343 23578999999 68999 999988754
No 55
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.88 E-value=5.7e-22 Score=192.70 Aligned_cols=174 Identities=23% Similarity=0.332 Sum_probs=130.1
Q ss_pred cChHHHHHHhC--C--CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhc-CCCCCeEEEEeeCCCcc
Q psy12838 240 VPVEYLFELFS--P--IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAA-LNPGDSVAISIKRGSFV 314 (494)
Q Consensus 240 ~~l~~ll~~lp--~--~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~i~~p~G~F~ 314 (494)
.|+|++...++ . ...|+|||+|.|.+. +.++|+|+.++ .|.+|.||.+ +++||.|.+.+|.|.|.
T Consensus 32 ~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~-~~l~l~v~~~~---------~G~~s~~l~~~l~~Gd~v~i~gP~G~~~ 101 (235)
T cd06217 32 LAGQHVDLRLTAIDGYTAQRSYSIASSPTQR-GRVELTVKRVP---------GGEVSPYLHDEVKVGDLLEVRGPIGTFT 101 (235)
T ss_pred CCcCeEEEEEecCCCceeeeeecccCCCCCC-CeEEEEEEEcC---------CCcchHHHHhcCCCCCEEEEeCCceeeE
Confidence 46666655554 2 235999999998764 78999999863 5899999975 89999999999999998
Q ss_pred CCCCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHc-CCCeEEE--e----c
Q psy12838 315 FPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTFYV--Q----H 387 (494)
Q Consensus 315 lp~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~-~~l~~yV--q----d 387 (494)
++....+++||||+||||||+++++++....+. .. .++++||+|+. .+++|.++|.++... ..++.+. . +
T Consensus 102 ~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~-~~-~i~l~~~~r~~-~~~~~~~el~~~~~~~~~~~~~~~~s~~~~~ 178 (235)
T cd06217 102 WNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGW-PV-PFRLLYSARTA-EDVIFRDELEQLARRHPNLHVTEALTRAAPA 178 (235)
T ss_pred eCCCCCceEEEEecCcCccHHHHHHHHHHhcCC-Cc-eEEEEEecCCH-HHhhHHHHHHHHHHHCCCeEEEEEeCCCCCC
Confidence 765446899999999999999999999887654 23 35899999998 688999999998874 3344221 1 0
Q ss_pred cccc-----ChhHHHHhhc-cCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 388 VMSR-----HLPLLQDLIC-SHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 388 ~l~~-----~~~~l~~~l~-~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
.... ....+.+.+. ..+..||+||| +.|.+++.+.|.+.
T Consensus 179 ~~~~~~g~~~~~~l~~~~~~~~~~~v~icGp-~~m~~~v~~~l~~~ 223 (235)
T cd06217 179 DWLGPAGRITADLIAELVPPLAGRRVYVCGP-PAFVEAATRLLLEL 223 (235)
T ss_pred CcCCcCcEeCHHHHHhhCCCccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 0000 1122233322 24688999999 79999999999765
No 56
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.88 E-value=1e-21 Score=192.17 Aligned_cols=174 Identities=25% Similarity=0.379 Sum_probs=131.4
Q ss_pred cChHHHHHHhC--C-CCCcccccccCCC-CCCCeEEEEEEEEEeecCCCCCccCchhhHhh-cCCCCCeEEEEeeCCCcc
Q psy12838 240 VPVEYLFELFS--P-IRPRAFSIASSPK-THSGELHLLVAIVKYKTKMLAPRYGLCSNYLA-ALNPGDSVAISIKRGSFV 314 (494)
Q Consensus 240 ~~l~~ll~~lp--~-~~pR~YSIaSsp~-~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~i~~p~G~F~ 314 (494)
.|+|++...++ + ..+|+|||+|.|. + .+.++|+|+.++ .|.+|.||. .+++|++|.+.+|.|.|.
T Consensus 47 ~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~-~~~l~~~ik~~~---------~G~~s~~l~~~~~~Gd~v~i~gP~G~f~ 116 (243)
T cd06216 47 RAGQHVRLGVEIDGVRHWRSYSLSSSPTQE-DGTITLTVKAQP---------DGLVSNWLVNHLAPGDVVELSQPQGDFV 116 (243)
T ss_pred CCCceEEEEEEECCeEEEEEEeccCCCcCC-CCeEEEEEEEcC---------CCcchhHHHhcCCCCCEEEEECCceeee
Confidence 46666544443 2 3579999999986 3 388999999863 589999997 499999999999999999
Q ss_pred CCCCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHc-CCCeE--EEecc-cc
Q psy12838 315 FPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTF--YVQHV-MS 390 (494)
Q Consensus 315 lp~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~-~~l~~--yVqd~-l~ 390 (494)
++.+..+++||||+||||||+++++++....+. .. .++|+||+|+. .|.+|.++|+++.+. ..+++ ++.+- ..
T Consensus 117 l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~~-~~-~i~l~~~~r~~-~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~ 193 (243)
T cd06216 117 LPDPLPPRLLLIAAGSGITPVMSMLRTLLARGP-TA-DVVLLYYARTR-EDVIFADELRALAAQHPNLRLHLLYTREELD 193 (243)
T ss_pred cCCCCCCCEEEEecCccHhHHHHHHHHHHhcCC-CC-CEEEEEEcCCh-hhhHHHHHHHHHHHhCCCeEEEEEEcCCccC
Confidence 887657899999999999999999999987643 22 36899999998 589999999999854 44442 22210 00
Q ss_pred c--ChhHHHHhhcc-CCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 391 R--HLPLLQDLICS-HQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 391 ~--~~~~l~~~l~~-~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
. ..+.+.+++.+ .+..+|+||| +.|++++++.|.+.
T Consensus 194 g~~~~~~l~~~~~~~~~~~vyvcGp-~~m~~~~~~~l~~~ 232 (243)
T cd06216 194 GRLSAAHLDAVVPDLADRQVYACGP-PGFLDAAEELLEAA 232 (243)
T ss_pred CCCCHHHHHHhccCcccCeEEEECC-HHHHHHHHHHHHHC
Confidence 1 12334444332 3579999999 69999999998764
No 57
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.87 E-value=3.6e-22 Score=206.15 Aligned_cols=173 Identities=22% Similarity=0.340 Sum_probs=129.2
Q ss_pred cChHHHHHHhC---CCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhh-cCCCCCeEEEEeeCCCccC
Q psy12838 240 VPVEYLFELFS---PIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLA-ALNPGDSVAISIKRGSFVF 315 (494)
Q Consensus 240 ~~l~~ll~~lp---~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~i~~p~G~F~l 315 (494)
.|+|++...++ ....|+|||+|.|.. +.++|+|+.++ .|.+|.||. ++++||.|.|.+|.|.|.+
T Consensus 34 ~pGQ~v~l~~~~~g~~~~R~ySi~s~p~~--~~l~i~vk~~~---------~G~~S~~l~~~l~~Gd~v~v~gP~G~f~~ 102 (352)
T TIGR02160 34 APGQHLTLRREVDGEELRRSYSICSAPAP--GEIRVAVKKIP---------GGLFSTWANDEIRPGDTLEVMAPQGLFTP 102 (352)
T ss_pred CCCCeEEEEEecCCcEeeeeccccCCCCC--CcEEEEEEEeC---------CCcchHHHHhcCCCCCEEEEeCCceeeec
Confidence 46666554443 234799999999853 78999999874 589999996 7999999999999999987
Q ss_pred CCCC--CCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCC--CeEE-Eecc--
Q psy12838 316 PKNE--ERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQ--LTFY-VQHV-- 388 (494)
Q Consensus 316 p~~~--~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~--l~~y-Vqd~-- 388 (494)
+... .+++||||+||||||+++|++++...+. .. .++|+||+|+. .|++|.+||+++..... ++.+ +-..
T Consensus 103 ~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~-~~-~v~l~~~~r~~-~d~~~~~el~~l~~~~~~~~~~~~~~s~~~ 179 (352)
T TIGR02160 103 DLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEP-RS-TFTLVYGNRRT-ASVMFAEELADLKDKHPQRFHLAHVLSREP 179 (352)
T ss_pred CCCccccccEEEEeccccHhHHHHHHHHHHhcCC-Cc-eEEEEEEeCCH-HHHHHHHHHHHHHHhCcCcEEEEEEecCCC
Confidence 6542 4799999999999999999999877543 22 46899999998 68999999999976543 3321 1110
Q ss_pred -----ccc--ChhHHHHhhc-----cCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 389 -----MSR--HLPLLQDLIC-----SHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 389 -----l~~--~~~~l~~~l~-----~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
... ..+.+.+++. .....+|+||| +.|++++++.|.+.
T Consensus 180 ~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~ 229 (352)
T TIGR02160 180 REAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGP-QAMVDDAEQALTGL 229 (352)
T ss_pred cCcccccCccCHHHHHHHHHhccCcccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 000 1123333332 12468999999 69999999999764
No 58
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.87 E-value=9.7e-22 Score=191.94 Aligned_cols=173 Identities=26% Similarity=0.418 Sum_probs=129.3
Q ss_pred cChHHHHHHhC---CCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhh-cCCCCCeEEEEeeCCCccC
Q psy12838 240 VPVEYLFELFS---PIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLA-ALNPGDSVAISIKRGSFVF 315 (494)
Q Consensus 240 ~~l~~ll~~lp---~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~i~~p~G~F~l 315 (494)
.|+|++...+| ...+|+|||+|.+.+ +.++|+|+.++ .|.+|.||. ++++|+.|.|.+|.|.|.+
T Consensus 34 ~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~~~---------~G~~s~~l~~~~~~G~~v~i~gP~G~~~~ 102 (241)
T cd06214 34 RPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKRVP---------GGRFSNWANDELKAGDTLEVMPPAGRFTL 102 (241)
T ss_pred CCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEEcC---------CCccchhHHhccCCCCEEEEeCCcccccc
Confidence 45665555554 246899999998875 48999999874 699999996 7999999999999999988
Q ss_pred CCC-CCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcC--CCeE--EEecccc
Q psy12838 316 PKN-EERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN--QLTF--YVQHVMS 390 (494)
Q Consensus 316 p~~-~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~--~l~~--yVqd~l~ 390 (494)
+.+ ..+++||||+||||||++++++++..... .. .++|+|++|+. .|++|.++|+++.+.. .++. ++.+.-.
T Consensus 103 ~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~-~~-~v~l~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 179 (241)
T cd06214 103 PPLPGARHYVLFAAGSGITPVLSILKTALAREP-AS-RVTLVYGNRTE-ASVIFREELADLKARYPDRLTVIHVLSREQG 179 (241)
T ss_pred CCCCCCCcEEEEecccChhhHHHHHHHHHhcCC-CC-cEEEEEEeCCH-HHhhHHHHHHHHHHhCcCceEEEEEecCCCC
Confidence 765 57899999999999999999999887653 22 36899999998 6899999999997653 3332 1221000
Q ss_pred ------cC--hhHHHHhh-----ccCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 391 ------RH--LPLLQDLI-----CSHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 391 ------~~--~~~l~~~l-----~~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
.. .+.+.+.+ ...+..||+||| +.|++++.+.|.+.
T Consensus 180 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp-~~mv~~v~~~l~~~ 228 (241)
T cd06214 180 DPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGP-EPMMDAVEAALLEL 228 (241)
T ss_pred CcccccCccCHHHHHHhhhhhcccccCcEEEEECC-HHHHHHHHHHHHHc
Confidence 00 01122222 123578999999 68999999998764
No 59
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.87 E-value=5.9e-22 Score=191.36 Aligned_cols=144 Identities=20% Similarity=0.313 Sum_probs=112.0
Q ss_pred CCcccccccCCCCC--CCeEEEEEEEEEeecCCCCCccCchhhHhhcCC--C---CCeEEEEeeCCCccCCC---CCCCC
Q psy12838 253 RPRAFSIASSPKTH--SGELHLLVAIVKYKTKMLAPRYGLCSNYLAALN--P---GDSVAISIKRGSFVFPK---NEERP 322 (494)
Q Consensus 253 ~pR~YSIaSsp~~~--~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~--~---Gd~v~i~~p~G~F~lp~---~~~~p 322 (494)
..|+|||||+|..+ .+.++|+|+.+ |.+|++|.++. . |+.|.+.+|.|.|.++. +..++
T Consensus 59 ~~R~ySias~p~~~~~~~~l~l~vk~~-----------G~~T~~L~~~~~~~~~~G~~v~v~gP~G~f~~~~~~~~~~~~ 127 (220)
T cd06197 59 FVRTFTVSSAPPHDPATDEFEITVRKK-----------GPVTGFLFQVARRLREQGLEVPVLGVGGEFTLSLPGEGAERK 127 (220)
T ss_pred ceeeEEeecCCccCCCCCEEEEEEEeC-----------CCCCHHHHHhhhcccCCCceEEEEecCCcccCCcccccCCce
Confidence 45999999999754 27899999863 89999997643 3 99999999999999875 34679
Q ss_pred EEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCeEEEecccccChhHHHHhhcc
Q psy12838 323 LIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTFYVQHVMSRHLPLLQDLICS 402 (494)
Q Consensus 323 iImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~~yVqd~l~~~~~~l~~~l~~ 402 (494)
+|||||||||||++++++++...+. ....++|+||+|+. .|++|.+||.++.. +...+.. . .
T Consensus 128 illIagG~GItP~~sil~~l~~~~~-~~~~v~l~~~~r~~-~~~~~~~el~~~~~---~~~~~~~-~-----------~- 189 (220)
T cd06197 128 MVWIAGGVGITPFLAMLRAILSSRN-TTWDITLLWSLRED-DLPLVMDTLVRFPG---LPVSTTL-F-----------I- 189 (220)
T ss_pred EEEEecccchhhHHHHHHHHHhccc-CCCcEEEEEEecch-hhHHHHHHHHhccC---CceEEEE-E-----------E-
Confidence 9999999999999999999886543 22346899999999 58999999987653 1111111 0 0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 403 HQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 403 ~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
...||+||| ++|+++|.+.+.+.
T Consensus 190 -~~~v~~CGP-~~m~~~~~~~~~~~ 212 (220)
T cd06197 190 -TSEVYLCGP-PALEKAVLEWLEGK 212 (220)
T ss_pred -eccEEEECc-HHHHHHHHHHhhhc
Confidence 127999999 68999998887754
No 60
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.87 E-value=1.3e-21 Score=198.91 Aligned_cols=159 Identities=15% Similarity=0.288 Sum_probs=118.7
Q ss_pred CCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCCccCCCCCCCCEEEEecCCcc
Q psy12838 253 RPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFVFPKNEERPLIMVGPGTGI 332 (494)
Q Consensus 253 ~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~F~lp~~~~~piImIa~GtGI 332 (494)
..|+|||+|+|... +.++|+|++++ .|.+|+||.++++||.|.+.+|.+.|.++.+..+++||||+||||
T Consensus 102 ~~R~YSiaS~p~~~-~~le~~IK~~~---------~G~~S~~L~~lk~Gd~v~v~GP~f~~~~~~~~~~~lvlIAGGsGI 171 (325)
T PTZ00274 102 CQRFYTPVTANHTK-GYFDIIVKRKK---------DGLMTNHLFGMHVGDKLLFRSVTFKIQYRPNRWKHVGMIAGGTGF 171 (325)
T ss_pred EEEeeecCCCCCCC-CeEEEEEEEcC---------CCcccHHHhcCCCCCEEEEeCCeeecccCCCCCceEEEEeCCcch
Confidence 46999999999753 89999999975 799999999999999999999977776655555899999999999
Q ss_pred hhhHHHHHHHHHcCCC----CCCceEEEEeeecCCcccccHHHHHHHHHcC--CCeE-EEeccc------cc-----Chh
Q psy12838 333 APFRSYIHTRISNQTA----SAQRLHLFFGCRNQGADFYFNQEWQNAIQAN--QLTF-YVQHVM------SR-----HLP 394 (494)
Q Consensus 333 APf~s~l~~~~~~~~~----~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~--~l~~-yVqd~l------~~-----~~~ 394 (494)
|||++|+++...++.. ....++|+||+|+. +|++|.++|+++++.. .++. ++-+.. .. ..+
T Consensus 172 TP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~-~di~~~~eL~~La~~~~~~f~v~~~ls~~~~~~~w~g~~G~V~~~ 250 (325)
T PTZ00274 172 TPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTE-RHILLKGLFDDLARRYSNRFKVYYTIDQAVEPDKWNHFLGYVTKE 250 (325)
T ss_pred hHHHHHHHHHHhcccccccCCCCeEEEEEEcCCH-HHhhHHHHHHHHHHhCCCcEEEEEEeCCCCcccCCCCCCCccCHH
Confidence 9999999998875320 12246899999998 6999999999998744 3442 222110 00 111
Q ss_pred HHHHhhcc---CCCEEEEeCCCCchHHHHHHH
Q psy12838 395 LLQDLICS---HQATVLIAGNANDMPTAVREV 423 (494)
Q Consensus 395 ~l~~~l~~---~~~~vYvCGp~~~M~~~V~~~ 423 (494)
.+.+.+.. .+..+|+||| ++|+++|...
T Consensus 251 ll~~~~~~~~~~~~~vylCGP-p~Mm~av~~~ 281 (325)
T PTZ00274 251 MVRRTMPAPEEKKKIIMLCGP-DQLLNHVAGT 281 (325)
T ss_pred HHHHhcCCCccCCcEEEEeCC-HHHHHHhcCC
Confidence 22333322 1257999999 6898888554
No 61
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.86 E-value=4.5e-21 Score=193.54 Aligned_cols=171 Identities=20% Similarity=0.311 Sum_probs=120.8
Q ss_pred CCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCCccCCCC--------------
Q psy12838 253 RPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFVFPKN-------------- 318 (494)
Q Consensus 253 ~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~F~lp~~-------------- 318 (494)
..|+||++|+|.+. +.++|+|+.+.-.........|.+|+||.++++||.|.+.+|.|.|.+..+
T Consensus 85 ~~R~YS~~s~~~~~-~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~ 163 (300)
T PTZ00319 85 VQHSYTPISSDDEK-GYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGDKIEMRGPVGKFEYLGNGTYTVHKGKGGLKT 163 (300)
T ss_pred EEeeeccCCCcccC-CEEEEEEEEeccCCCCCCCCCCChhhhhhcCCCCCEEEEEccceeeEecCCcceeeccccccccc
Confidence 46999999998653 889999998610000001135999999999999999999999999865421
Q ss_pred -CCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCe-EEEecccc------
Q psy12838 319 -EERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT-FYVQHVMS------ 390 (494)
Q Consensus 319 -~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~-~yVqd~l~------ 390 (494)
..+++||||+|||||||+++++++..... ....++|+||+|+. .|++|.++|+++.....++ .++.+.-.
T Consensus 164 ~~~~~illIAgGtGIaP~~sml~~l~~~~~-~~~~i~liyg~r~~-~dl~~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (300)
T PTZ00319 164 MHVDAFAMIAGGTGITPMLQIIHAIKKNKE-DRTKVFLVYANQTE-DDILLRKELDEAAKDPRFHVWYTLDREATPEWKY 241 (300)
T ss_pred cccceEEEEecCcccCHHHHHHHHHHhCCC-CCceEEEEEecCCH-HHhhHHHHHHHHhhCCCEEEEEEECCCCCCCccc
Confidence 12589999999999999999999887543 23346899999998 6999999999876555555 22222100
Q ss_pred --c--ChhHHHHhhcc--------CCCEEEEeCCCCchHH-HHHHHHHHH
Q psy12838 391 --R--HLPLLQDLICS--------HQATVLIAGNANDMPT-AVREVLVET 427 (494)
Q Consensus 391 --~--~~~~l~~~l~~--------~~~~vYvCGp~~~M~~-~V~~~L~~i 427 (494)
. ....+.+.+.. .+..||+||| ++|++ ++.+.|.+.
T Consensus 242 ~~G~v~~~~l~~~~~~~~~~~~~~~~~~vyiCGp-~~mv~~~~~~~L~~~ 290 (300)
T PTZ00319 242 GTGYVDEEMLRAHLPVPDPQNSGIKKVMALMCGP-PPMLQMAVKPNLEKI 290 (300)
T ss_pred ccceeCHHHHHhhcCCccccccccCCeEEEEECC-HHHHHHHHHHHHHHc
Confidence 0 11223333321 2468999999 68987 567777654
No 62
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.86 E-value=4.7e-21 Score=188.73 Aligned_cols=174 Identities=24% Similarity=0.381 Sum_probs=139.8
Q ss_pred ccChHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCCccCCCC
Q psy12838 239 AVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFVFPKN 318 (494)
Q Consensus 239 ~~~l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~F~lp~~ 318 (494)
..|+|++...+|....|||||+|.+... +.++|+|++.+ .|.+|.++..+++||.|.+.||.|++.+..+
T Consensus 36 ~~pGQfv~l~~~~~~~~P~si~~~~~~~-g~~~l~i~~~~---------~G~~T~~i~~~k~gd~i~v~GP~G~~~~~~~ 105 (252)
T COG0543 36 FKPGQFVMLRVPGGVRRPYSLASAPDDK-GELELHIRVYE---------VGKVTKYIFGLKEGDKIRVRGPLGNGFLREK 105 (252)
T ss_pred cCCCcEEEEEeCCCcEEEeeeccCCCcC-CcEEEEEEEEe---------CChHHHHHhhccCCCEEEEEcCCCCCccccc
Confidence 4688888888889999999999999864 78888888774 6999999999999999999999998777766
Q ss_pred CCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCeEEEec-ccccC-----
Q psy12838 319 EERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTFYVQH-VMSRH----- 392 (494)
Q Consensus 319 ~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~~yVqd-~l~~~----- 392 (494)
..+|+++||+|||+||++++++++..++. .. .++++||.|++ .|+++.++|+++... .+ .++.+ .....
T Consensus 106 ~~~~vlliagGtG~aPl~~i~~~~~~~~~-~~-~V~~~~G~~~~-~dl~~~~el~~~~~~-~~-~~~~~~~~~G~~G~v~ 180 (252)
T COG0543 106 IGKPVLLIAGGTGIAPLYAIAKELKEKGD-AN-KVTLLYGARTA-KDLLLLDELEELAEK-EV-HPVTDDGWKGRKGFVT 180 (252)
T ss_pred cCCcEEEEecccCHhHHHHHHHHHHhcCC-Cc-eEEEEEeccCh-hhcccHHHHHHhhcC-cE-EEEECCCCCccCccee
Confidence 67889999999999999999999998762 22 36899999999 699999999999864 22 33433 11111
Q ss_pred hhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHHHH
Q psy12838 393 LPLLQDLICSHQATVLIAGNANDMPTAVREVLVETI 428 (494)
Q Consensus 393 ~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i~ 428 (494)
.+.+.+++......+|+||| +.|++++.+.+.+..
T Consensus 181 ~~~~~~~~~~~~~~v~~cGp-~~M~~~v~~~~~~~g 215 (252)
T COG0543 181 TDVLKELLDLEVDDVYICGP-PAMVKAVREKLKEYG 215 (252)
T ss_pred HHHHhhhccccCCEEEEECC-HHHHHHHHHHHHhcC
Confidence 23333444334689999999 799999999988754
No 63
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.85 E-value=4.7e-21 Score=188.60 Aligned_cols=162 Identities=22% Similarity=0.340 Sum_probs=121.8
Q ss_pred cChHHHHHHhCCC---CCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCC-ccC
Q psy12838 240 VPVEYLFELFSPI---RPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGS-FVF 315 (494)
Q Consensus 240 ~~l~~ll~~lp~~---~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~-F~l 315 (494)
.|+|++...+|.. .+|+|||+|+| . +.++|+|+.+ |..|.+|.++++|++|.|.+|.|. |.+
T Consensus 33 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~-~--~~l~l~Vk~~-----------G~~t~~l~~l~~G~~v~i~gP~G~~f~l 98 (250)
T PRK00054 33 KPGQFVMVWVPGVEPLLERPISISDID-K--NEITILYRKV-----------GEGTKKLSKLKEGDELDIRGPLGNGFDL 98 (250)
T ss_pred CCCcEEEEEeCCCCCcCceeeEEeeeC-C--CEEEEEEEEc-----------ChHHHHHhcCCCCCEEEEEcccCCCCCC
Confidence 4666655445533 68999999998 3 8999999863 889999999999999999999995 887
Q ss_pred CCCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCeEEEe-c-ccccCh
Q psy12838 316 PKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTFYVQ-H-VMSRHL 393 (494)
Q Consensus 316 p~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~~yVq-d-~l~~~~ 393 (494)
+. ..+++||||+||||||++++++++...+. .++|+|++|+. .|++|.++|+++.. .++. + ......
T Consensus 99 ~~-~~~~~vlIagG~GiaP~~s~l~~~~~~~~----~v~l~~~~r~~-~d~~~~~el~~~~~-----~~~~~~~~~~~~~ 167 (250)
T PRK00054 99 EE-IGGKVLLVGGGIGVAPLYELAKELKKKGV----EVTTVLGARTK-DEVIFEEEFAKVGD-----VYVTTDDGSYGFK 167 (250)
T ss_pred CC-CCCeEEEEeccccHHHHHHHHHHHHHcCC----cEEEEEEcCCH-HHhhhHHHHHhcCC-----EEEEecCCCCCcc
Confidence 64 46899999999999999999999886543 35799999998 68999999998432 1221 1 100111
Q ss_pred hHHHHhhc---cCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 394 PLLQDLIC---SHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 394 ~~l~~~l~---~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
..+.+.+. .....||+||| +.|++++.+.|.+.
T Consensus 168 g~v~~~l~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~ 203 (250)
T PRK00054 168 GFVTDVLDELDSEYDAIYSCGP-EIMMKKVVEILKEK 203 (250)
T ss_pred cchhHhHhhhccCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 11222221 22468999999 79999999999874
No 64
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.85 E-value=6e-21 Score=186.93 Aligned_cols=167 Identities=19% Similarity=0.279 Sum_probs=122.6
Q ss_pred cChHHHHHHh---CCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCCccCC
Q psy12838 240 VPVEYLFELF---SPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFVFP 316 (494)
Q Consensus 240 ~~l~~ll~~l---p~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~F~lp 316 (494)
.|+|++...+ +....|+|||+|.+.+. +.++|+|+. .|..|+||.++++|+.|.|.+|.|.|.+.
T Consensus 26 ~pGQ~v~l~~~~~~~~~~rpySi~s~~~~~-~~l~l~i~~-----------~G~~t~~l~~~~~G~~l~i~gP~G~~~~~ 93 (243)
T cd06192 26 RPGQFVFLRNFESPGLERIPLSLAGVDPEE-GTISLLVEI-----------RGPKTKLIAELKPGEKLDVMGPLGNGFEG 93 (243)
T ss_pred CCCCeEEEecCCCCCceeeeeEeeecCCCC-CEEEEEEEE-----------cCchHHHHHhCCCCCEEEEEccCCCCCcc
Confidence 4566655445 34578999999998653 899999985 38899999999999999999999976655
Q ss_pred CCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCeEEEeccc-ccCh--
Q psy12838 317 KNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTFYVQHVM-SRHL-- 393 (494)
Q Consensus 317 ~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~~yVqd~l-~~~~-- 393 (494)
.+..+++||||+||||||++++++++...+. .++|+||+|+. +|.+|.++|+++. ....++.+.- ....
T Consensus 94 ~~~~~~~lliagGtGiap~~~~l~~~~~~~~----~v~l~~~~r~~-~d~~~~~el~~~~---~~~~~~~~~~~~~~~g~ 165 (243)
T cd06192 94 PKKGGTVLLVAGGIGLAPLLPIAKKLAANGN----KVTVLAGAKKA-KEEFLDEYFELPA---DVEIWTTDDGELGLEGK 165 (243)
T ss_pred CCCCCEEEEEeCcccHHHHHHHHHHHHHCCC----eEEEEEecCcH-HHHHHHHHHHhhc---CeEEEEecCCCCcccee
Confidence 4446899999999999999999999887532 36899999998 6899999998772 1112221110 0000
Q ss_pred -hHHHHhh-ccCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 394 -PLLQDLI-CSHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 394 -~~l~~~l-~~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
......+ ...+..+|+||| +.|++++++.|.+.
T Consensus 166 v~~~~~~~~~~~~~~v~icGp-~~mv~~~~~~l~~~ 200 (243)
T cd06192 166 VTDSDKPIPLEDVDRIIVAGS-DIMMKAVVEALDEW 200 (243)
T ss_pred echhhhhhhcccCCEEEEECC-HHHHHHHHHHHHhh
Confidence 0001111 112468999999 68999999999775
No 65
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.85 E-value=4.4e-21 Score=186.80 Aligned_cols=160 Identities=19% Similarity=0.320 Sum_probs=120.4
Q ss_pred cChHHHHHHhCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCC-ccCCCC
Q psy12838 240 VPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGS-FVFPKN 318 (494)
Q Consensus 240 ~~l~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~-F~lp~~ 318 (494)
.|+|++...+|....|+|||+|+| +.++|+|+. .|.+|+||.++++||.|.+.+|.|. |.++
T Consensus 25 ~pGQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~~-----------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~-- 87 (233)
T cd06220 25 KPGQFVMVWVPGVDEIPMSLSYID----GPNSITVKK-----------VGEATSALHDLKEGDKLGIRGPYGNGFELV-- 87 (233)
T ss_pred CCCceEEEEeCCCCcceeEEecCC----CeEEEEEEe-----------cChHHHHHHhcCCCCEEEEECcCCCCccCC--
Confidence 467776555666667999999998 679999975 3899999999999999999999997 8765
Q ss_pred CCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCeEEEeccc---ccC-hh
Q psy12838 319 EERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTFYVQHVM---SRH-LP 394 (494)
Q Consensus 319 ~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~~yVqd~l---~~~-~~ 394 (494)
.+|+||||+||||||+++++++.... . .++|+||+|+. .|++|.++|++. ..+.....+.. ... .+
T Consensus 88 -~~~~vliAgGtGitP~~sil~~~~~~-~----~i~l~~~~r~~-~d~~~~~eL~~~---~~~~~~~~~~~~~~~g~~~~ 157 (233)
T cd06220 88 -GGKVLLIGGGIGIAPLAPLAERLKKA-A----DVTVLLGARTK-EELLFLDRLRKS---DELIVTTDDGSYGFKGFVTD 157 (233)
T ss_pred -CCeEEEEecCcChHHHHHHHHHHHhc-C----CEEEEEecCCh-HHChhHHHHhhC---CcEEEEEeCCCCcccceehH
Confidence 57999999999999999999998765 2 36899999998 689999999982 11211111100 000 11
Q ss_pred HHHHhhccCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 395 LLQDLICSHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 395 ~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
.+.++.......||+||| +.|.+++.+.|.+.
T Consensus 158 ~l~~~~~~~~~~vyicGp-~~m~~~~~~~L~~~ 189 (233)
T cd06220 158 LLKELDLEEYDAIYVCGP-EIMMYKVLEILDER 189 (233)
T ss_pred HHhhhcccCCCEEEEECC-HHHHHHHHHHHHhc
Confidence 222332223468999999 78999999999764
No 66
>PRK05802 hypothetical protein; Provisional
Probab=99.85 E-value=2.1e-21 Score=197.34 Aligned_cols=170 Identities=14% Similarity=0.146 Sum_probs=127.7
Q ss_pred cChHHHHHHhC---CCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCC--Ccc
Q psy12838 240 VPVEYLFELFS---PIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRG--SFV 314 (494)
Q Consensus 240 ~~l~~ll~~lp---~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G--~F~ 314 (494)
.|+|++...++ +...|||||+|++.+. +.++|+|+++ |..|++|.++++||.|.|.||.| .|.
T Consensus 96 ~PGQFv~l~~~~~~~~~~rP~SI~~~~~~~-g~l~l~ik~~-----------G~~T~~L~~l~~Gd~l~v~GP~GnG~F~ 163 (320)
T PRK05802 96 YPGSFVFLRNKNSSSFFDVPISIMEADTEE-NIIKVAIEIR-----------GVKTKKIAKLNKGDEILLRGPYWNGILG 163 (320)
T ss_pred CCCceEEEEEcCCCCEeEEeeEecccCCCC-CEEEEEEEec-----------ChhHHHHhcCCCCCEEEEeCCCCcCcCC
Confidence 46776554443 2346999999998653 8899999874 99999999999999999999985 476
Q ss_pred CC---CCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCeEEEecc-cc
Q psy12838 315 FP---KNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTFYVQHV-MS 390 (494)
Q Consensus 315 lp---~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~~yVqd~-l~ 390 (494)
++ ....+++|+||+|+||||++++++++..++. .++|+||+|++ .|++|.++|+++........++.|- +.
T Consensus 164 l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~~----~v~li~g~r~~-~~~~~~~el~~~~~~~~~~~~~ddG~~~ 238 (320)
T PRK05802 164 LKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNGN----KIIVIIDKGPF-KNNFIKEYLELYNIEIIELNLLDDGELS 238 (320)
T ss_pred cccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcCC----cEEEEEeCCCH-HHHHHHHHHHHhhCceEEEEecccCCCC
Confidence 53 2335799999999999999999999887653 36899999998 6899999999886532222222221 11
Q ss_pred -cChhHHHHhhccC-CCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 391 -RHLPLLQDLICSH-QATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 391 -~~~~~l~~~l~~~-~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
.....+.+++.+. ...||+||| +.|+++|.+.+.+.
T Consensus 239 ~~~~g~v~~~l~~~~~~~vy~CGP-~~M~k~v~~~l~~~ 276 (320)
T PRK05802 239 EEGKDILKEIIKKEDINLIHCGGS-DILHYKIIEYLDKL 276 (320)
T ss_pred ccccchHHHHhcCCCCCEEEEECC-HHHHHHHHHHHhhh
Confidence 1234556666432 367999999 68999999988763
No 67
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.85 E-value=3.9e-21 Score=192.41 Aligned_cols=167 Identities=19% Similarity=0.221 Sum_probs=123.2
Q ss_pred cChHHHHHHhCC-CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeE-EEEeeCCCccCCC
Q psy12838 240 VPVEYLFELFSP-IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSV-AISIKRGSFVFPK 317 (494)
Q Consensus 240 ~~l~~ll~~lp~-~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v-~i~~p~G~F~lp~ 317 (494)
.|+|++...++. ..+|+|||+|.+.++ +.++|+|+.+ |..|.+|.++++||.| .|.+|.|.|....
T Consensus 29 ~pGQfv~l~~~~~~~~rpySias~~~~~-~~i~l~vk~~-----------G~~T~~L~~l~~Gd~v~~i~GP~G~~~~~~ 96 (281)
T PRK06222 29 KPGQFVIVRIDEKGERIPLTIADYDREK-GTITIVFQAV-----------GKSTRKLAELKEGDSILDVVGPLGKPSEIE 96 (281)
T ss_pred CCCeEEEEEeCCCCCceeeEeeEEcCCC-CEEEEEEEeC-----------CcHHHHHhcCCCCCEEeeEEcCCCCCcccC
Confidence 477766555543 346899999987553 7899999864 8999999999999999 7999999865443
Q ss_pred CCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCeEEEecccccCh----
Q psy12838 318 NEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTFYVQHVMSRHL---- 393 (494)
Q Consensus 318 ~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~~yVqd~l~~~~---- 393 (494)
. .+++||||+|+||||++++++++...+. .++++||+|+. .|++|.++|+++.... .+...+......
T Consensus 97 ~-~~~~llIaGGiGiaPl~~l~~~l~~~~~----~v~l~~g~r~~-~d~~~~~el~~~~~~~--~v~~~d~~~g~~G~v~ 168 (281)
T PRK06222 97 K-FGTVVCVGGGVGIAPVYPIAKALKEAGN----KVITIIGARNK-DLLILEDEMKAVSDEL--YVTTDDGSYGRKGFVT 168 (281)
T ss_pred C-CCeEEEEeCcCcHHHHHHHHHHHHHCCC----eEEEEEecCCH-HHhhcHHHHHhhCCeE--EEEcCCCCcCcccchH
Confidence 3 5799999999999999999998876543 36899999998 6899999999876421 111111110111
Q ss_pred hHHHHhhcc-C-CCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 394 PLLQDLICS-H-QATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 394 ~~l~~~l~~-~-~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
+.+.+++.+ . ...||+||| ++|++++.+.+.+.
T Consensus 169 ~~l~~~~~~~~~~~~vy~CGP-~~M~~~v~~~l~~~ 203 (281)
T PRK06222 169 DVLKELLESGKKVDRVVAIGP-VIMMKFVAELTKPY 203 (281)
T ss_pred HHHHHHhhcCCCCcEEEEECC-HHHHHHHHHHHHhc
Confidence 223333322 1 357999999 79999999988764
No 68
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.85 E-value=8.6e-21 Score=188.07 Aligned_cols=170 Identities=21% Similarity=0.335 Sum_probs=130.1
Q ss_pred cChHHHHHHhCC----CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhh-cCCCCCeEEEEeeCCCcc
Q psy12838 240 VPVEYLFELFSP----IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLA-ALNPGDSVAISIKRGSFV 314 (494)
Q Consensus 240 ~~l~~ll~~lp~----~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~i~~p~G~F~ 314 (494)
-++|+...-++. ..|+|||||++... .++++.||.. |..|+-|. ++++|+++.+.||+|.|.
T Consensus 244 qaGQFAfLk~~~~~~~~~~HPFTIa~s~~~--sel~FsIK~L-----------GD~Tk~l~dnLk~G~k~~vdGPYG~F~ 310 (438)
T COG4097 244 QAGQFAFLKIEIEEFRMRPHPFTIACSHEG--SELRFSIKAL-----------GDFTKTLKDNLKVGTKLEVDGPYGKFD 310 (438)
T ss_pred cCCceEEEEeccccccCCCCCeeeeeCCCC--ceEEEEehhh-----------hhhhHHHHHhccCCceEEEecCcceee
Confidence 355554333443 46999999999875 5899999874 99999997 599999999999999999
Q ss_pred CCCCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHH-cCCCeEEEecccccC-
Q psy12838 315 FPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQ-ANQLTFYVQHVMSRH- 392 (494)
Q Consensus 315 lp~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~-~~~l~~yVqd~l~~~- 392 (494)
......+ -|+||||+|||||+|+++....+.. .+ .++|||.+|+. ++-+|.+||+++.+ ...++..+.|.-.+.
T Consensus 311 ~~~g~~~-QVWIAGGIGITPFis~l~~l~~~~s-~~-~V~L~Y~~~n~-e~~~y~~eLr~~~qkl~~~~lHiiDSs~~g~ 386 (438)
T COG4097 311 FERGLNT-QVWIAGGIGITPFISMLFTLAERKS-DP-PVHLFYCSRNW-EEALYAEELRALAQKLPNVVLHIIDSSKDGY 386 (438)
T ss_pred cccCCcc-cEEEecCcCcchHHHHHHhhccccc-CC-ceEEEEEecCC-chhHHHHHHHHHHhcCCCeEEEEecCCCCCc
Confidence 8764333 9999999999999999999887433 33 46999999998 68899999999998 556666665543331
Q ss_pred --hhHHHHhhcc-CCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 393 --LPLLQDLICS-HQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 393 --~~~l~~~l~~-~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
.+++....+. ....||+||| ++|+++++..|++.
T Consensus 387 l~~e~ler~~~~~~~~sv~fCGP-~~m~dsL~r~l~~~ 423 (438)
T COG4097 387 LDQEDLERYPDRPRTRSVFFCGP-IKMMDSLRRDLKKQ 423 (438)
T ss_pred cCHHHhhccccccCcceEEEEcC-HHHHHHHHHHHHHc
Confidence 2333333221 1237999999 78999999999864
No 69
>KOG0534|consensus
Probab=99.84 E-value=2.6e-20 Score=183.44 Aligned_cols=163 Identities=21% Similarity=0.351 Sum_probs=132.0
Q ss_pred CCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCCccCCCCCCCCEEEEecCC
Q psy12838 251 PIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFVFPKNEERPLIMVGPGT 330 (494)
Q Consensus 251 ~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~F~lp~~~~~piImIa~Gt 330 (494)
...-|+||..|++.+ .+.++|.|+..+ .|.+|.||.+|++||+|.++||.|.|.++....+.+.||||||
T Consensus 97 ~~vvRpYTPvs~~~~-~g~~~l~VK~Y~---------~G~mS~~l~~LkiGd~ve~rGP~G~~~~~~~~~~~l~miAgGt 166 (286)
T KOG0534|consen 97 KLVVRPYTPVSLDDD-KGYFDLVVKVYP---------KGKMSQHLDSLKIGDTVEFRGPIGEFKYDPQKAKHLGMIAGGT 166 (286)
T ss_pred cEEEEecCCccCccc-cceEEEEEEecc---------CCcccHHHhcCCCCCEEEEecCccceEecCCCcceEEEEeccc
Confidence 346899999999987 489999999985 6999999999999999999999999998877789999999999
Q ss_pred cchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCe---EEEeccccc---------ChhHHHH
Q psy12838 331 GIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT---FYVQHVMSR---------HLPLLQD 398 (494)
Q Consensus 331 GIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~---~yVqd~l~~---------~~~~l~~ 398 (494)
||||++.++++.+.... +...++|+|++++. .|.++++||+.++.+..-+ .|+.+.-.+ ..+.+.+
T Consensus 167 GItPmlqii~~il~~~~-d~tki~lly~N~te-~DILlr~eL~~la~~~p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~ 244 (286)
T KOG0534|consen 167 GITPMLQLIRAILKDPE-DTTKISLLYANKTE-DDILLREELEELASKYPERFKVWYVVDQPPEIWDGSVGFITKDLIKE 244 (286)
T ss_pred chhhHHHHHHHHhcCCC-CCcEEEEEEecCCc-cccchHHHHHHHHhhCcceEEEEEEEcCCcccccCccCccCHHHHHh
Confidence 99999999999998776 34557899999999 6999999999999876533 566554332 1355566
Q ss_pred hhcc--C-CCEEEEeCCCCchHHH-HHHHHHH
Q psy12838 399 LICS--H-QATVLIAGNANDMPTA-VREVLVE 426 (494)
Q Consensus 399 ~l~~--~-~~~vYvCGp~~~M~~~-V~~~L~~ 426 (494)
.+.. . ...++|||| ++|... +...|.+
T Consensus 245 ~l~~~~~~~~~~liCGP-p~m~~~~~~~~le~ 275 (286)
T KOG0534|consen 245 HLPPPKEGETLVLICGP-PPMINGAAQGNLEK 275 (286)
T ss_pred hCCCCCCCCeEEEEECC-HHHHhHHHHHHHHh
Confidence 5542 2 478999999 689864 4444443
No 70
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.84 E-value=1.6e-20 Score=184.61 Aligned_cols=167 Identities=20% Similarity=0.235 Sum_probs=123.5
Q ss_pred cChHHHHHHhC-CCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeE-EEEeeCCCccCCC
Q psy12838 240 VPVEYLFELFS-PIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSV-AISIKRGSFVFPK 317 (494)
Q Consensus 240 ~~l~~ll~~lp-~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v-~i~~p~G~F~lp~ 317 (494)
.|+|++...++ ...+|+|||+|.|.++ +.++|+|+.+ |..|.+|.++++|+.| .+.+|.|.|.+..
T Consensus 28 ~pGQf~~l~~~~~~~~~pySi~s~~~~~-~~~~~~vk~~-----------G~~t~~l~~l~~G~~v~~i~gP~G~~~~~~ 95 (248)
T cd06219 28 KPGQFVIVRADEKGERIPLTIADWDPEK-GTITIVVQVV-----------GKSTRELATLEEGDKIHDVVGPLGKPSEIE 95 (248)
T ss_pred CCCcEEEEEcCCCCCccceEeEEEcCCC-CEEEEEEEeC-----------CchHHHHHhcCCCCEeeeeecCCCCCeecC
Confidence 46666544443 3467999999987553 7899999863 8899999999999999 6999999876543
Q ss_pred CCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCeEEEeccccc----Ch
Q psy12838 318 NEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTFYVQHVMSR----HL 393 (494)
Q Consensus 318 ~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~~yVqd~l~~----~~ 393 (494)
..+++||||+||||||++++++++...+. .++|+||+|+. .|++|.+||+++..+. .....+.... -.
T Consensus 96 -~~~~~lliagG~GiaP~~~~l~~~~~~~~----~v~l~~~~r~~-~~~~~~~el~~l~~~~--~~~~~~~~~~~~g~v~ 167 (248)
T cd06219 96 -NYGTVVFVGGGVGIAPIYPIAKALKEAGN----RVITIIGARTK-DLVILEDEFRAVSDEL--IITTDDGSYGEKGFVT 167 (248)
T ss_pred -CCCeEEEEeCcccHHHHHHHHHHHHHcCC----eEEEEEEcCCH-HHhhhHHHHHhhcCeE--EEEeCCCCCCccccch
Confidence 36799999999999999999999776443 36899999999 6999999999986431 1111111000 01
Q ss_pred hHHHHhhcc--CCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 394 PLLQDLICS--HQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 394 ~~l~~~l~~--~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
+.+.+++.. ....||+||| +.|++++.+.|.+.
T Consensus 168 ~~l~~~~~~~~~~~~vyiCGP-~~m~~~~~~~l~~~ 202 (248)
T cd06219 168 DPLKELIESGEKVDLVIAIGP-PIMMKAVSELTRPY 202 (248)
T ss_pred HHHHHHHhccCCccEEEEECC-HHHHHHHHHHHHHc
Confidence 344444421 2357999999 79999999988654
No 71
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.80 E-value=1.2e-19 Score=173.39 Aligned_cols=158 Identities=19% Similarity=0.289 Sum_probs=121.1
Q ss_pred ccChHHHHHHhCCC----CCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCC------CCCeEEEEe
Q psy12838 239 AVPVEYLFELFSPI----RPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALN------PGDSVAISI 308 (494)
Q Consensus 239 ~~~l~~ll~~lp~~----~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~------~Gd~v~i~~ 308 (494)
..|+|++...+|.. +.|+|||+|.+....+.++|+|+.. .|.+|..+..+. .|+.|.+.|
T Consensus 25 ~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~----------~G~~t~~~~~~~~~~~~~~~~~v~v~G 94 (210)
T cd06186 25 WKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAK----------KGFTTRLLRKALKSPGGGVSLKVLVEG 94 (210)
T ss_pred cCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEec----------CChHHHHHHHHHhCcCCCceeEEEEEC
Confidence 45777766666643 7899999999875338999999875 388888888776 889999999
Q ss_pred eCCCccCCCCCCCCEEEEecCCcchhhHHHHHHHHHcCCC--CCCceEEEEeeecCCcccccHHHHHH---HHHcCCCeE
Q psy12838 309 KRGSFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTA--SAQRLHLFFGCRNQGADFYFNQEWQN---AIQANQLTF 383 (494)
Q Consensus 309 p~G~F~lp~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~--~~~~i~Lf~G~R~~~~d~ly~~el~~---~~~~~~l~~ 383 (494)
|+|.+..+....+++||||+||||||++++++++...... ....++|+|++|+.+...+|.++|.. ......+.+
T Consensus 95 P~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~~~~~~~~~l~~~~~~~~~~~~~i 174 (210)
T cd06186 95 PYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDREDLEWFLDELRAAQELEVDGEIEI 174 (210)
T ss_pred CCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHHHhHHHHHHHHhhhhccCCceEEE
Confidence 9998874444578999999999999999999998875410 12246899999999432579999975 222222446
Q ss_pred EEecccccChhHHHHhhccCCCEEEEeCCCCchHHHHHHHHHH
Q psy12838 384 YVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVE 426 (494)
Q Consensus 384 yVqd~l~~~~~~l~~~l~~~~~~vYvCGp~~~M~~~V~~~L~~ 426 (494)
|+.. ||+||| .+|.++++..+.+
T Consensus 175 ~~T~-------------------v~~CGp-~~~~~~~~~~~~~ 197 (210)
T cd06186 175 YVTR-------------------VVVCGP-PGLVDDVRNAVAK 197 (210)
T ss_pred EEee-------------------EEEECc-hhhccHHHHHHhh
Confidence 6654 999999 6899999887764
No 72
>PLN02252 nitrate reductase [NADPH]
Probab=99.80 E-value=5.9e-19 Score=199.32 Aligned_cols=171 Identities=21% Similarity=0.346 Sum_probs=123.1
Q ss_pred CCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCCccC--------CCC--CCCC
Q psy12838 253 RPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFVF--------PKN--EERP 322 (494)
Q Consensus 253 ~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~F~l--------p~~--~~~p 322 (494)
..|+|||+|.+.+. +.++|+|+++.-.........|.+|++|.+|++|+.|.|.+|.|.|.+ +.. ..++
T Consensus 682 ~~R~YSpaS~~~~~-g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~vGd~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~ 760 (888)
T PLN02252 682 CMRAYTPTSSDDEV-GHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKK 760 (888)
T ss_pred EEeeeEecccCCCC-CEEEEEEEEEeccccCccCCCCchhhHHhcCCCCCEEEEecCccceeecccceeeeccccccCce
Confidence 57999999998654 799999998721000011136999999999999999999999997643 322 2479
Q ss_pred EEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcC--CCe-EEEecccc-c-------
Q psy12838 323 LIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN--QLT-FYVQHVMS-R------- 391 (494)
Q Consensus 323 iImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~--~l~-~yVqd~l~-~------- 391 (494)
++|||+||||||++++|++++.... ....++||||+|+. .|++|++||+++++.. .++ .|+...-. +
T Consensus 761 vvmIAGGsGITPi~silr~ll~~~~-d~t~i~Liyg~Rt~-~Dil~~eEL~~la~~~p~~~~v~~vls~~~~~~w~g~~G 838 (888)
T PLN02252 761 LAMLAGGTGITPMYQVIQAILRDPE-DKTEMSLVYANRTE-DDILLREELDRWAAEHPDRLKVWYVVSQVKREGWKYSVG 838 (888)
T ss_pred EEEEecceehhHHHHHHHHHHhccC-CCCcEEEEEEECCH-HHhhHHHHHHHHHHhCCCCEEEEEEecCCCcCCCCCcCC
Confidence 9999999999999999999887543 22346899999998 6999999999998754 344 33322110 0
Q ss_pred --ChhHHHHhhcc--CCCEEEEeCCCCchHHH-HHHHHHHH
Q psy12838 392 --HLPLLQDLICS--HQATVLIAGNANDMPTA-VREVLVET 427 (494)
Q Consensus 392 --~~~~l~~~l~~--~~~~vYvCGp~~~M~~~-V~~~L~~i 427 (494)
..+.+.+++.. .+..+|+||| +.|.+. +...|.++
T Consensus 839 rV~~~ll~~~l~~~~~~~~vyiCGP-p~Mi~~av~~~L~~~ 878 (888)
T PLN02252 839 RVTEAMLREHLPEGGDETLALMCGP-PPMIEFACQPNLEKM 878 (888)
T ss_pred cCCHHHHHHhcccCCCCeEEEEeCC-HHHHHHHHHHHHHHc
Confidence 11233444432 3567999999 689874 67777654
No 73
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.76 E-value=2.4e-18 Score=167.80 Aligned_cols=153 Identities=19% Similarity=0.216 Sum_probs=109.0
Q ss_pred CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCCccCCCCCCCCEEEEecCCc
Q psy12838 252 IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFVFPKNEERPLIMVGPGTG 331 (494)
Q Consensus 252 ~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~F~lp~~~~~piImIa~GtG 331 (494)
...|+|||+|.+... +.++|.|+... ..|..|+||+++++||.|.+.+|.|.|.++. ..+++||||+|||
T Consensus 62 ~~~R~YSi~~~~~~~-~~l~~~v~~~~--------~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~-~~~~~vlia~GtG 131 (235)
T cd06193 62 PVMRTYTVRRFDPEA-GELDIDFVLHG--------DEGPASRWAASAQPGDTLGIAGPGGSFLPPP-DADWYLLAGDETA 131 (235)
T ss_pred CcCcccceeEEcCCC-CEEEEEEEeCC--------CCCchHHHHhhCCCCCEEEEECCCCCCCCCC-CcceEEEEeccch
Confidence 356999999987543 89999998753 1289999999999999999999999998765 3679999999999
Q ss_pred chhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCe-EEEecccccCh--hH-HHHhh--ccCCC
Q psy12838 332 IAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT-FYVQHVMSRHL--PL-LQDLI--CSHQA 405 (494)
Q Consensus 332 IAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~-~yVqd~l~~~~--~~-l~~~l--~~~~~ 405 (494)
|||+++++++.... . .++++|++|+. +|.++.+++. .++ .++...-.... .. +...+ ...+.
T Consensus 132 i~p~~~il~~~~~~-~----~~~~~~~~~~~-~d~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (235)
T cd06193 132 LPAIAAILEELPAD-A----RGTALIEVPDA-ADEQPLPAPA------GVEVTWLHRGGAEAGELALLAVRALAPPAGDG 199 (235)
T ss_pred HHHHHHHHHhCCCC-C----eEEEEEEECCH-HHccccCCCC------CcEEEEEeCCCCCcchhHHHHHhcccCCCCCe
Confidence 99999999987543 1 36799999998 4544333221 222 22221111111 11 11111 12357
Q ss_pred EEEEeCCCCchHHHHHHHHHHH
Q psy12838 406 TVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 406 ~vYvCGp~~~M~~~V~~~L~~i 427 (494)
.+|+||| +.|++++++.|.+.
T Consensus 200 ~vyicGp-~~mv~~v~~~l~~~ 220 (235)
T cd06193 200 YVWIAGE-AGAVRALRRHLREE 220 (235)
T ss_pred EEEEEcc-HHHHHHHHHHHHHc
Confidence 8999999 68999999988763
No 74
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.76 E-value=3.4e-18 Score=163.95 Aligned_cols=171 Identities=22% Similarity=0.440 Sum_probs=128.7
Q ss_pred CcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCCccCCCCCCCCEEEEecCCcch
Q psy12838 254 PRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFVFPKNEERPLIMVGPGTGIA 333 (494)
Q Consensus 254 pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~F~lp~~~~~piImIa~GtGIA 333 (494)
-|.||+||-|.+. +.|.|-|++..-........-|.||+|+-.|++||+|.|.||+|.|.... .++++|||+||.|.|
T Consensus 211 ~rAYSmAsYPeE~-giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGDKvtisGPfGEfFaKd-tdaemvFigGGAGma 288 (410)
T COG2871 211 IRAYSMASYPEEK-GIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGDKVTISGPFGEFFAKD-TDAEMVFIGGGAGMA 288 (410)
T ss_pred HHHhhhhcChhhc-CeEEEEEEeccCCCCCCCCCccceeeeEEeecCCCeEEEeccchhhhhcc-CCCceEEEecCcCcC
Confidence 4899999999876 88888888764333334556799999999999999999999999776554 478999999999999
Q ss_pred hhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcC-CCeEEE--ecccccC-----hhHHHHh-----h
Q psy12838 334 PFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN-QLTFYV--QHVMSRH-----LPLLQDL-----I 400 (494)
Q Consensus 334 Pf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~-~l~~yV--qd~l~~~-----~~~l~~~-----l 400 (494)
|+||-+-..+.+-.+.+ .+.+.||+|+. .+.+|+++++++.+.. ++.-.+ .|-+.+. ...+.+. +
T Consensus 289 pmRSHIfDqL~rlhSkR-kis~WYGARS~-rE~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgFihnv~~en~L 366 (410)
T COG2871 289 PMRSHIFDQLKRLHSKR-KISFWYGARSL-REMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGFIHNVLYENYL 366 (410)
T ss_pred chHHHHHHHHHhhcccc-eeeeeeccchH-HHhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhHHHHHHHhhhh
Confidence 99999888777655233 46899999999 6888999999998754 343111 1222211 1122221 1
Q ss_pred ----ccCCCEEEEeCCCCchHHHHHHHHHHHHh
Q psy12838 401 ----CSHQATVLIAGNANDMPTAVREVLVETIT 429 (494)
Q Consensus 401 ----~~~~~~vYvCGp~~~M~~~V~~~L~~i~~ 429 (494)
...+..+|+||| +-|..+|.+.|.+...
T Consensus 367 k~h~aPEDceyYmCGP-p~mNasvikmL~dlGV 398 (410)
T COG2871 367 KDHEAPEDCEYYMCGP-PLMNASVIKMLKDLGV 398 (410)
T ss_pred hcCCCchheeEEeeCc-chhhHHHHHHHHhcCc
Confidence 124788999999 7899999999988765
No 75
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.75 E-value=3.3e-18 Score=193.07 Aligned_cols=167 Identities=18% Similarity=0.225 Sum_probs=125.4
Q ss_pred cChHHHHHHhCC-CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeE-EEEeeCCCccCCC
Q psy12838 240 VPVEYLFELFSP-IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSV-AISIKRGSFVFPK 317 (494)
Q Consensus 240 ~~l~~ll~~lp~-~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v-~i~~p~G~F~lp~ 317 (494)
.|+|++...++. ..+|||||+|.+.+. +.++|+|+.+ |.+|.+|.++++||.| .|.+|.|.|....
T Consensus 29 ~pGQFv~l~~~~~~~~rp~Si~~~~~~~-g~i~~~vk~v-----------G~~T~~L~~l~~Gd~v~~v~GP~G~~~~~~ 96 (752)
T PRK12778 29 KPGQFVIVRVGEKGERIPLTIADADPEK-GTITLVIQEV-----------GLSTTKLCELNEGDYITDVVGPLGNPSEIE 96 (752)
T ss_pred CCCeeEEEEeCCCCCeeEEEeeeeCCCC-CEEEEEEEEc-----------CchHHHHhcCCCCCEeCeEeCCCCCCccCC
Confidence 477776655553 346899999998653 8999999875 8999999999999999 7999999877653
Q ss_pred CCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCeEEEecccccCh----
Q psy12838 318 NEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTFYVQHVMSRHL---- 393 (494)
Q Consensus 318 ~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~~yVqd~l~~~~---- 393 (494)
. .++++|||+|+||||++++++++...+. .+++|||+|+. .|++|.++|+++.... .+...+......
T Consensus 97 ~-~~~~llvaGG~GiaPl~~l~~~l~~~~~----~v~l~~g~r~~-~~l~~~~el~~~~~~~--~~~t~dg~~g~~G~v~ 168 (752)
T PRK12778 97 N-YGTVVCAGGGVGVAPMLPIVKALKAAGN----RVITILGGRSK-ELIILEDEMRESSDEV--IIMTDDGSYGRKGLVT 168 (752)
T ss_pred C-CCeEEEEECCEeHHHHHHHHHHHHHCCC----eEEEEeccCCH-HHhhhHHHHHhhcCeE--EEEECCCCCCCcccHH
Confidence 3 5799999999999999999999887653 36899999998 6899999999886431 111112111111
Q ss_pred hHHHHhhcc--CCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 394 PLLQDLICS--HQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 394 ~~l~~~l~~--~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
+.+.+++.. ....||+||| +.|++++.+.+.+.
T Consensus 169 ~~l~~~~~~~~~~~~vy~CGP-~~M~~~v~~~l~~~ 203 (752)
T PRK12778 169 DGLEEVIKRETKVDKVFAIGP-AIMMKFVCLLTKKY 203 (752)
T ss_pred HHHHHHhhcCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 223333332 1357999999 79999999988763
No 76
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.74 E-value=1.7e-17 Score=194.33 Aligned_cols=162 Identities=24% Similarity=0.365 Sum_probs=121.4
Q ss_pred CCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCC----------CccCCCCCCCC
Q psy12838 253 RPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRG----------SFVFPKNEERP 322 (494)
Q Consensus 253 ~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G----------~F~lp~~~~~p 322 (494)
..|+|||+|.|.. .+.++|+|+. ..|.+|.||+++++||.|.|.+|.| .|.++....+|
T Consensus 965 ~~R~YS~~S~p~~-~~~i~l~Vr~----------~~G~~S~~L~~l~~Gd~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ 1033 (1167)
T PTZ00306 965 LIGYYSPITLPDD-LGVISILARG----------DKGTLKEWISALRPGDSVEMKACGGLRIERRPADKQFVFRGHVIRK 1033 (1167)
T ss_pred EEEEeccCCCCCC-CCeEEEEEEc----------CCChhHHHHhhCCCCCEEEEeCCcCccccccCccceeeeccCCCce
Confidence 4599999999965 4789999863 2599999999999999999999655 45565555689
Q ss_pred EEEEecCCcchhhHHHHHHHHHcCC-CCCCceEEEEeeecCCcccccHHHHHHHHHcC--CCeEE-Eeccc----cc---
Q psy12838 323 LIMVGPGTGIAPFRSYIHTRISNQT-ASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN--QLTFY-VQHVM----SR--- 391 (494)
Q Consensus 323 iImIa~GtGIAPf~s~l~~~~~~~~-~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~--~l~~y-Vqd~l----~~--- 391 (494)
+||||+|||||||++|++++..++. .....++||||+|+. .|++|.++|+++.... .++++ +.+.- ..
T Consensus 1034 ivlIAGGtGItP~~sml~~~l~~~~~~~~~~i~Llyg~r~~-~dl~~~~eL~~l~~~~~~~f~~~~~ls~~~~~w~~~~G 1112 (1167)
T PTZ00306 1034 LALIAGGTGVAPMLQIIRAALKKPYVDSIESIRLIYAAEDV-SELTYRELLESYRKENPGKFKCHFVLNNPPEGWTDGVG 1112 (1167)
T ss_pred EEEEECCccHhHHHHHHHHHHhCcccCCCceEEEEEEeCCH-HHhhHHHHHHHHHHHCCCCEEEEEEECCCCcccCCCCC
Confidence 9999999999999999999887542 122246899999998 6999999999998753 34422 21110 00
Q ss_pred --ChhHHHHhhc--cCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 392 --HLPLLQDLIC--SHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 392 --~~~~l~~~l~--~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
....+.+.+. ..+..||+||| +.|++++++.|.+.
T Consensus 1113 ~i~~~~l~~~l~~~~~~~~vyiCGP-~~mv~~v~~~L~~~ 1151 (1167)
T PTZ00306 1113 FVDRALLQSALQPPSKDLLVAICGP-PVMQRAVKADLLAL 1151 (1167)
T ss_pred CCCHHHHHHhcCCCCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 1123445543 23567999999 78999999988764
No 77
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.67 E-value=2.4e-16 Score=180.25 Aligned_cols=170 Identities=15% Similarity=0.171 Sum_probs=118.8
Q ss_pred cChHHHHHHhC-CCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEE-EEeeCCCcc-CC
Q psy12838 240 VPVEYLFELFS-PIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVA-ISIKRGSFV-FP 316 (494)
Q Consensus 240 ~~l~~ll~~lp-~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~-i~~p~G~F~-lp 316 (494)
.|+|++....+ +...|||||+|.+... +.++|+|+.+ |..|.+|.++++||.|. |.+|.|.|. ++
T Consensus 678 ~PGQFv~L~~~~~ge~rP~SIas~~~~~-g~i~l~Vk~v-----------G~~T~~L~~lk~Gd~l~~I~GPlG~~f~~~ 745 (944)
T PRK12779 678 QAGQFVRVLPWEKGELIPLTLADWDAEK-GTIDLVVQGM-----------GTSSLEINRMAIGDAFSGIAGPLGRASELH 745 (944)
T ss_pred CCCceEEEEeCCCCCEEeEEccCCCCCC-CEEEEEEEee-----------ccHHHHHhcCCCcCEEeeeecCCCCCcCCc
Confidence 46776554443 3346999999987543 8899999864 88899999999999995 999999764 43
Q ss_pred C-CCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHH---HHHHHcCC--CeEEE-e-cc
Q psy12838 317 K-NEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEW---QNAIQANQ--LTFYV-Q-HV 388 (494)
Q Consensus 317 ~-~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el---~~~~~~~~--l~~yV-q-d~ 388 (494)
. ...+++||||||+||||++++++++...+. .++|+||+|+. +++++.+++ +++.+... +..++ . +-
T Consensus 746 ~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g~----~V~li~G~Rs~-edl~~~del~~L~~la~~~~~~~~v~~ttddg 820 (944)
T PRK12779 746 RYEGNQTVVFCAGGVGLPPVYPIMRAHLRLGN----HVTLISGFRAK-EFLFWTGDDERVGKLKAEFGDQLDVIYTTNDG 820 (944)
T ss_pred cccCCCcEEEEEccEeHHHHHHHHHHHHHCCC----CEEEEEEeCCH-HHhhhHHHHHHHHHHHHHcCCCeEEEEEecCC
Confidence 3 224699999999999999999999877553 36899999998 577777664 44544322 22222 1 11
Q ss_pred cccCh----hHHHHhhccC-------CCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 389 MSRHL----PLLQDLICSH-------QATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 389 l~~~~----~~l~~~l~~~-------~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
..... +.+.+++.+. ...||+||| +.|+++|.+.|.+.
T Consensus 821 s~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP-~~Mmkav~~~l~~~ 869 (944)
T PRK12779 821 SFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGP-PLMMRAVSDLTKPY 869 (944)
T ss_pred CCCCccccChHHHHHHHhcccccccCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 10010 1222333211 357999999 79999999988664
No 78
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.66 E-value=2.3e-16 Score=181.78 Aligned_cols=166 Identities=15% Similarity=0.217 Sum_probs=121.8
Q ss_pred cChHHHHHHhC-CCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHh-hcCCCCCeE-EEEeeCCCccCC
Q psy12838 240 VPVEYLFELFS-PIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYL-AALNPGDSV-AISIKRGSFVFP 316 (494)
Q Consensus 240 ~~l~~ll~~lp-~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L-~~l~~Gd~v-~i~~p~G~F~lp 316 (494)
.|+|+++..++ ...+|||||++.+... +.|+|.|+.+ |..|.|| .++++||.| .+.||.|.+...
T Consensus 29 ~PGQFV~l~~~~~~errplSIa~~~~~~-g~i~l~vk~v-----------G~~T~~L~~~lk~Gd~l~~v~GPlG~~~~~ 96 (1006)
T PRK12775 29 EPGHFVMLRLYEGAERIPLTVADFDRKK-GTITMVVQAL-----------GKTTREMMTKFKAGDTFEDFVGPLGLPQHI 96 (1006)
T ss_pred CCCeeEEEEeCCCCeeEEEEecCcCCCC-CEEEEEEEec-----------CcHHHHHHhcCCCCCEEeeeecCCCCCCCC
Confidence 47777665554 3457999999987543 7899999864 8999998 689999999 799999976543
Q ss_pred CCCCCCEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCeEEEecccccCh---
Q psy12838 317 KNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTFYVQHVMSRHL--- 393 (494)
Q Consensus 317 ~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~~yVqd~l~~~~--- 393 (494)
. ..+++||||||+||||++++++++...+. .++++||+|++ .+++|.++|+++... +.+...|-.....
T Consensus 97 ~-~~~~vllVaGGiGIAPl~s~~r~l~~~g~----~v~li~g~R~~-~~l~~~del~~~~~~--~~v~tddgs~G~~G~v 168 (1006)
T PRK12775 97 D-KAGHVVLVGGGLGVAPVYPQLRAFKEAGA----RTTGIIGFRNK-DLVFWEDKFGKYCDD--LIVCTDDGSYGKPGFV 168 (1006)
T ss_pred C-CCCeEEEEEEhHHHHHHHHHHHHHHhCCC----cEEEEEeCCCh-HHcccHHHHHhhcCc--EEEEECCCCCCCCCCh
Confidence 3 25789999999999999999998877654 26799999998 588999999876532 2122222111111
Q ss_pred -hHHHHhhcc-CCCEEEEeCCCCchHHHHHHHHHH
Q psy12838 394 -PLLQDLICS-HQATVLIAGNANDMPTAVREVLVE 426 (494)
Q Consensus 394 -~~l~~~l~~-~~~~vYvCGp~~~M~~~V~~~L~~ 426 (494)
+.+.+++.+ ....||+||| +.|++.|.+.+.+
T Consensus 169 t~~l~~~l~~~~~d~vy~CGP-~~Mm~av~~~~~~ 202 (1006)
T PRK12775 169 TAALKEVCEKDKPDLVVAIGP-LPMMNACVETTRP 202 (1006)
T ss_pred HHHHHHHhccCCCCEEEEECC-HHHHHHHHHHHHH
Confidence 233344432 2357999999 6899999998865
No 79
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.58 E-value=1.2e-15 Score=130.12 Aligned_cols=94 Identities=31% Similarity=0.510 Sum_probs=66.9
Q ss_pred EEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCC--e-EEEeccccc------C-hh
Q psy12838 325 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQL--T-FYVQHVMSR------H-LP 394 (494)
Q Consensus 325 mIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l--~-~yVqd~l~~------~-~~ 394 (494)
|||+|||||||+|+++++...+. ...++||||+|+. +|++|.++|+++.....- . .++...-.. . .+
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~~--~~~v~l~~~~r~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~ 77 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERND--NRKVTLFYGARTP-EDLLFRDELEALAQEYPNRFHVVYVSSPDDGWDGFKGRVTD 77 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHTC--TSEEEEEEEESSG-GGSTTHHHHHHHHHHSTTCEEEEEETTTTSSTTSEESSHHH
T ss_pred CeecceeHHHHHHHHHHHHHhCC--CCCEEEEEEEccc-ccccchhHHHHHHhhcccccccccccccccccCCceeehhH
Confidence 79999999999999999998633 3346899999999 699999999999876542 2 222111110 0 01
Q ss_pred HH-HHhh----ccCCCEEEEeCCCCchHHHHHH
Q psy12838 395 LL-QDLI----CSHQATVLIAGNANDMPTAVRE 422 (494)
Q Consensus 395 ~l-~~~l----~~~~~~vYvCGp~~~M~~~V~~ 422 (494)
.+ .+++ ...+..||+||| ++|+++|++
T Consensus 78 ~~~~~~~~~~~~~~~~~v~iCGp-~~m~~~v~~ 109 (109)
T PF00175_consen 78 LLLEDLLPEKIDPDDTHVYICGP-PPMMKAVRK 109 (109)
T ss_dssp HHHHHHHHHHHCTTTEEEEEEEE-HHHHHHHHH
T ss_pred HHHHhhcccccCCCCCEEEEECC-HHHHHHhcC
Confidence 11 1222 246889999999 799998864
No 80
>PLN02292 ferric-chelate reductase
Probab=99.48 E-value=2.7e-13 Score=149.37 Aligned_cols=164 Identities=21% Similarity=0.291 Sum_probs=112.8
Q ss_pred ccChHHHHHHhCC---CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhh-cCCCCCe-----EEEEee
Q psy12838 239 AVPVEYLFELFSP---IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLA-ALNPGDS-----VAISIK 309 (494)
Q Consensus 239 ~~~l~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~Gd~-----v~i~~p 309 (494)
..|+|+....+|. .+.|||||+|+|..+++.++++||. .|..|++|. .+++||. |.++||
T Consensus 352 ~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~-----------~G~~T~~L~~~l~~gd~i~~~~V~VeGP 420 (702)
T PLN02292 352 YSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKS-----------QGKWSTKLYHMLSSSDQIDRLAVSVEGP 420 (702)
T ss_pred cCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEc-----------CCchhHHHHHhCCCCCccccceEEEECC
Confidence 3577765555554 4789999999985445889999985 377788885 5688884 679999
Q ss_pred CCCccCCCCCCCCEEEEecCCcchhhHHHHHHHHHcCCC---CCCceEEEEeeecCCcccccHHHHH-------HHHHcC
Q psy12838 310 RGSFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTA---SAQRLHLFFGCRNQGADFYFNQEWQ-------NAIQAN 379 (494)
Q Consensus 310 ~G~F~lp~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~---~~~~i~Lf~G~R~~~~d~ly~~el~-------~~~~~~ 379 (494)
+|.+..+....++++|||||+||||++++++++.+++.. ....+.|+|++|+. +|..+.+++. ++++..
T Consensus 421 YG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~-~Dl~~ld~l~~e~~~~~~l~~~~ 499 (702)
T PLN02292 421 YGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNS-SDLSMLDLILPTSGLETELSSFI 499 (702)
T ss_pred ccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCH-HHhhHHHHHHHhhhhHHHHhhcC
Confidence 998764444457999999999999999999999875421 11347899999999 6887776543 222333
Q ss_pred CCe--EEEeccccc-------ChhHHHHhhc----cCCCEEEEeCCCC
Q psy12838 380 QLT--FYVQHVMSR-------HLPLLQDLIC----SHQATVLIAGNAN 414 (494)
Q Consensus 380 ~l~--~yVqd~l~~-------~~~~l~~~l~----~~~~~vYvCGp~~ 414 (494)
.++ +||+..-.. +.+.+.+.+. .+...+.+|||..
T Consensus 500 ~~~i~iyvTr~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~Gp~~ 547 (702)
T PLN02292 500 DIQIKAFVTREKEAGVKESTGNMNIIKTLWFKPNLSDQPISPILGPNS 547 (702)
T ss_pred CceEEEEEeCCCCCCCcccccchhhhhhhcCCCCCCCCceEEEeCCCc
Confidence 333 777642111 1233333322 1357899999953
No 81
>PLN02631 ferric-chelate reductase
Probab=99.46 E-value=2e-13 Score=150.10 Aligned_cols=137 Identities=23% Similarity=0.297 Sum_probs=102.9
Q ss_pred ccChHHHHHHhCC---CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhc-CCC-CC--eEEEEeeCC
Q psy12838 239 AVPVEYLFELFSP---IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAA-LNP-GD--SVAISIKRG 311 (494)
Q Consensus 239 ~~~l~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~-Gd--~v~i~~p~G 311 (494)
..|+|++...+|. .+.|||||+|+|..+++.++|+|+. .|..|++|.+ ++. |+ +|.++||+|
T Consensus 335 ~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~-----------~Gg~T~~L~~~l~~~g~~i~V~VeGPYG 403 (699)
T PLN02631 335 YTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRR-----------QGSWTQKLYTHLSSSIDSLEVSTEGPYG 403 (699)
T ss_pred CCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEc-----------CChHHHHHHHhhhcCCCeeEEEEECCCC
Confidence 3567766555554 5789999999986545889999985 4888998854 543 45 688889999
Q ss_pred CccCCCCCCCCEEEEecCCcchhhHHHHHHHHHcCCC---CCCceEEEEeeecCCcccccHHHHHHH------HHcCCCe
Q psy12838 312 SFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTA---SAQRLHLFFGCRNQGADFYFNQEWQNA------IQANQLT 382 (494)
Q Consensus 312 ~F~lp~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~---~~~~i~Lf~G~R~~~~d~ly~~el~~~------~~~~~l~ 382 (494)
.+..+.....++||||||+||||++|+++++..+... ....++|+|++|+. +|.+|.||+..+ .++.+++
T Consensus 404 ~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~-~dL~f~deL~~l~~~~~~l~~~ni~ 482 (699)
T PLN02631 404 PNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHY-HDLAFLDLIFPLDISVSDISRLNLR 482 (699)
T ss_pred CCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCH-HHhhhHHHHhhhccchhhhhcCceE
Confidence 8776655567899999999999999999999865321 11247899999998 689999999863 2223443
Q ss_pred --EEEec
Q psy12838 383 --FYVQH 387 (494)
Q Consensus 383 --~yVqd 387 (494)
.||+.
T Consensus 483 i~iyVTR 489 (699)
T PLN02631 483 IEAYITR 489 (699)
T ss_pred EEEEEcC
Confidence 77764
No 82
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.45 E-value=4.9e-13 Score=147.75 Aligned_cols=163 Identities=20% Similarity=0.276 Sum_probs=109.8
Q ss_pred cChHHHHHHhCC---CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHh-hc----CCCC------CeEE
Q psy12838 240 VPVEYLFELFSP---IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYL-AA----LNPG------DSVA 305 (494)
Q Consensus 240 ~~l~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L-~~----l~~G------d~v~ 305 (494)
.|+|++...+|. .+.|||||+|+|..+++.++++|+.. |..|+.| .. +.+| .++.
T Consensus 340 ~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~-----------gG~T~~L~~~i~~~l~~g~~~~~~~~v~ 408 (722)
T PLN02844 340 APTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCE-----------GGWTNSLYNKIQAELDSETNQMNCIPVA 408 (722)
T ss_pred CCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeC-----------CCchHHHHHHHHhhccCCCCcccceEEE
Confidence 467766555554 46899999998864457899999863 3444444 22 3344 2789
Q ss_pred EEeeCCCccCCCCCCCCEEEEecCCcchhhHHHHHHHHHcCCC---CCCceEEEEeeecCCcccccHHHHHHH-----HH
Q psy12838 306 ISIKRGSFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTA---SAQRLHLFFGCRNQGADFYFNQEWQNA-----IQ 377 (494)
Q Consensus 306 i~~p~G~F~lp~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~---~~~~i~Lf~G~R~~~~d~ly~~el~~~-----~~ 377 (494)
+.||+|.+..+....++++||||||||||+++++++...++.. ....+.|+|++|+. +|+.|.+++... .+
T Consensus 409 VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~-~dL~~~del~~~l~~~~~~ 487 (722)
T PLN02844 409 IEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKS-QDICLLNPISSLLLNQSSN 487 (722)
T ss_pred EECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCH-HHhhhHHHHHHHhHHhHHH
Confidence 9999998876654468999999999999999999999875431 12346899999999 688888887532 22
Q ss_pred cC--CCeEEEecccccChhHHHHhhcc-----------CCCEEEEeCCCCc
Q psy12838 378 AN--QLTFYVQHVMSRHLPLLQDLICS-----------HQATVLIAGNAND 415 (494)
Q Consensus 378 ~~--~l~~yVqd~l~~~~~~l~~~l~~-----------~~~~vYvCGp~~~ 415 (494)
.. .+..||+..-... ..+.+++.+ +...+.+||+...
T Consensus 488 ~~~lkl~iyVTRE~~~~-~rl~~~i~~~~~~~~~~~~~~~~~~~i~G~~~~ 537 (722)
T PLN02844 488 QLNLKLKVFVTQEEKPN-ATLRELLNQFSQVQTVNFSTKCSRYAIHGLESF 537 (722)
T ss_pred hcCceEEEEECCCCCCC-CchhhHhhccchhhhcCCCCCCCceEEeCCCch
Confidence 22 2337776422211 133333322 3467999999533
No 83
>KOG3378|consensus
Probab=99.24 E-value=5.1e-12 Score=121.01 Aligned_cols=159 Identities=24% Similarity=0.331 Sum_probs=100.1
Q ss_pred CcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhh-cCCCCCeEEEEeeCCCccCCC---CCCCCEEEEecC
Q psy12838 254 PRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLA-ALNPGDSVAISIKRGSFVFPK---NEERPLIMVGPG 329 (494)
Q Consensus 254 pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~i~~p~G~F~lp~---~~~~piImIa~G 329 (494)
-|.||.++......|.+.|.|+.+- .|+.|+|++ ++++||.|.+..|.|+|.+.. +.++|++++|+|
T Consensus 201 ~~~~~~S~~~~t~rN~~R~sVr~~A---------~G~VS~~~H~~~KVGD~v~~S~PAG~F~~~r~~~~~N~PL~~~a~G 271 (385)
T KOG3378|consen 201 LREYSLSNRVDTCRNQFRISVRRVA---------GGVVSNFVHDNLKVGDIVGVSPPAGNFVYKRSEENVNRPLLCFAGG 271 (385)
T ss_pred HHHHHHhhhhhhhccceeEEEeehh---------chhhHHHhhccccccceeeccCCCccceeehhhhccCCceEEecCC
Confidence 3455555554443488999999873 799999997 799999999999999998764 457999999999
Q ss_pred CcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHH---HHHHcCC-Ce-EEEeccccc--ChhHHHHhhcc
Q psy12838 330 TGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQ---NAIQANQ-LT-FYVQHVMSR--HLPLLQDLICS 402 (494)
Q Consensus 330 tGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~---~~~~~~~-l~-~yVqd~l~~--~~~~l~~~l~~ 402 (494)
+||||+++++++...=.. +++. .+--.. -+.-|++-+. .+..... .+ .-|...+.. +.+.+.++- -
T Consensus 272 iGiTPLi~iiE~~~~C~~-~RP~---~~~~~~--~~~K~k~~~K~~e~~~~E~s~~~~~IV~~~~~~iI~~~~L~~~~-~ 344 (385)
T KOG3378|consen 272 IGITPLIPIIETALLCYS-SRPF---KQWLEQ--LKLKYKENLKLKEFFSEESSVTKEQIVDEVMTRIINEEDLEKLD-L 344 (385)
T ss_pred cCccccHHHHHHHHhcCC-CCcH---HHHHHH--HHHHHHHHHHHHHHHHHhhccchhhhhhhhhhhhcCHHHhhhcC-h
Confidence 999999999998765222 2221 110000 1122222111 1111111 11 112211111 223333332 2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHHHh
Q psy12838 403 HQATVLIAGNANDMPTAVREVLVETIT 429 (494)
Q Consensus 403 ~~~~vYvCGp~~~M~~~V~~~L~~i~~ 429 (494)
..++||.||| ...++.|...|.++..
T Consensus 345 s~~DiY~~G~-~~~M~~~~~~L~~L~~ 370 (385)
T KOG3378|consen 345 SECDIYMLGP-NNYMRFVKQELVKLGV 370 (385)
T ss_pred hhCceeeeCc-HHHHHHHHHHHHHhcC
Confidence 4799999999 5777899999988754
No 84
>KOG0039|consensus
Probab=99.00 E-value=3.1e-09 Score=117.57 Aligned_cols=138 Identities=21% Similarity=0.330 Sum_probs=92.8
Q ss_pred EEeeeccCCCCccccChHHHHHHhC---CCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhh-cCC--
Q psy12838 226 VLEMLTDFPHATRAVPVEYLFELFS---PIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLA-ALN-- 299 (494)
Q Consensus 226 ~~dvl~~fp~~~~~~~l~~ll~~lp---~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~-- 299 (494)
++++...-|....--|+|++...+| .++.+||||+|+|. ++.+.++||.+ |..|.-|. .+.
T Consensus 369 vi~L~~~Kp~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp~--dd~lsvhIk~~-----------g~wT~~L~~~~~~~ 435 (646)
T KOG0039|consen 369 VLELIMSKPPGFKYKPGQYIFVNCPSLSKLEWHPFTITSAPE--DDFLSVHIKAL-----------GDWTEKLRNAFSEV 435 (646)
T ss_pred eEEEEEeCCCCCCCCCCCEEEEECccccccccCCceeecCCC--CCEEEEEEEec-----------CcHHHHHHHHHhhh
Confidence 4444443332222346787666667 46999999999994 38999999985 55555553 222
Q ss_pred ----------CCCeEEEEeeCCCccCCCCCCCCEEEEecCCcchhhHHHHHHHHHcCCC--------------CCCceEE
Q psy12838 300 ----------PGDSVAISIKRGSFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTA--------------SAQRLHL 355 (494)
Q Consensus 300 ----------~Gd~v~i~~p~G~F~lp~~~~~piImIa~GtGIAPf~s~l~~~~~~~~~--------------~~~~i~L 355 (494)
..-+|.|.||+|.-..+-.....++|||+|+|++||.|+++++..+... ....++.
T Consensus 436 ~~~~~~~~~~~~~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F 515 (646)
T KOG0039|consen 436 SQPPESDKSYPFPKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYF 515 (646)
T ss_pred cccccccccccCceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeE
Confidence 1346999999985443333456789999999999999999999863221 1123467
Q ss_pred EEeeecCCcccccHHHHHHHH
Q psy12838 356 FFGCRNQGADFYFNQEWQNAI 376 (494)
Q Consensus 356 f~G~R~~~~d~ly~~el~~~~ 376 (494)
+|-+|....-.++.+.+....
T Consensus 516 ~Wv~~~~~sf~wf~~~l~~v~ 536 (646)
T KOG0039|consen 516 YWVTREQRSFEWFKGLLTEVE 536 (646)
T ss_pred EEEeccccchHHHHHHHHHHH
Confidence 777888755556677666555
No 85
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.74 E-value=4.6e-08 Score=110.72 Aligned_cols=107 Identities=16% Similarity=0.225 Sum_probs=80.2
Q ss_pred CCEEeeeccCCCCcc-ccChHHHHHHhC-----CC-CCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhh
Q psy12838 224 RTVLEMLTDFPHATR-AVPVEYLFELFS-----PI-RPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLA 296 (494)
Q Consensus 224 ~t~~dvl~~fp~~~~-~~~l~~ll~~lp-----~~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~ 296 (494)
.+++.+....|.... ..|+|+++...+ .+ .|||+||++...+. +.++|+|++| |..|..|+
T Consensus 803 p~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e~-g~It~i~rvV-----------GkgT~~Ls 870 (1028)
T PRK06567 803 DKTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVEK-GLISFIVFEV-----------GKSTSLCK 870 (1028)
T ss_pred CCEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCCC-CEEEEEEEEE-----------ChHHHHHh
Confidence 346666666665322 247776655443 12 67799999987653 8899999987 99999999
Q ss_pred cCCCCCeEEEEeeCC-CccCCCCCCCCEEEEecCCcchhhHHHHHHHHHcCC
Q psy12838 297 ALNPGDSVAISIKRG-SFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQT 347 (494)
Q Consensus 297 ~l~~Gd~v~i~~p~G-~F~lp~~~~~piImIa~GtGIAPf~s~l~~~~~~~~ 347 (494)
++++||.|.+.||.| .|.++. .+.+++||||+|+|| +++++.+.+.
T Consensus 871 ~l~~Gd~v~v~GPLG~pF~i~~--~k~vLLVgGGVGiAp---Lak~Lk~~G~ 917 (1028)
T PRK06567 871 TLSENEKVVLMGPTGSPLEIPQ--NKKIVIVDFEVGNIG---LLKVLKENNN 917 (1028)
T ss_pred cCCCCCEEEEEcccCCCCCCCC--CCeEEEEEccccHHH---HHHHHHHCCC
Confidence 999999999999999 577663 467999999999997 4455555443
No 86
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=98.59 E-value=1.2e-07 Score=86.18 Aligned_cols=55 Identities=20% Similarity=0.453 Sum_probs=40.5
Q ss_pred CEEEEecCCcchhhHHHHHHHHHcCC---CCCCceEEEEeeecCCcccccHHHHHHHH
Q psy12838 322 PLIMVGPGTGIAPFRSYIHTRISNQT---ASAQRLHLFFGCRNQGADFYFNQEWQNAI 376 (494)
Q Consensus 322 piImIa~GtGIAPf~s~l~~~~~~~~---~~~~~i~Lf~G~R~~~~d~ly~~el~~~~ 376 (494)
.++|||||+||||++++++++..... .....++|+|.+|+.+.-.+|.++|.++.
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~ 60 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELL 60 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHH
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHH
Confidence 58999999999999999999876322 13345789999999965567886666554
No 87
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=98.46 E-value=1.8e-07 Score=78.41 Aligned_cols=66 Identities=32% Similarity=0.464 Sum_probs=53.7
Q ss_pred cChHHHHHHhCC---CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCCccC
Q psy12838 240 VPVEYLFELFSP---IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFVF 315 (494)
Q Consensus 240 ~~l~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~F~l 315 (494)
.|+|++...++. ...|+|||+|.+.+. +.++|+|+..+ .|.+|+||+++++||.|.+.+|.|.|.+
T Consensus 31 ~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~~-~~~~~~ik~~~---------~G~~S~~L~~l~~Gd~v~i~gP~G~f~y 99 (99)
T PF00970_consen 31 KPGQFVSVRVPINGKQVSRPYSPASSPDDK-GYLEFAIKRYP---------NGRVSRYLHQLKPGDEVEIRGPYGNFTY 99 (99)
T ss_dssp TTT-EEEEEEEETTEEEEEEEEBCSSTTSS-SEEEEEEEECT---------TSHHHHHHHTSCTTSEEEEEEEESSEEE
T ss_pred CcceEEEEEEccCCcceecceeEeeecCCC-CcEEEEEEecc---------CCHHHHHHHhCCCCCEEEEEEcccccCC
Confidence 456665555552 356999999999753 89999999873 7999999999999999999999999863
No 88
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.0042 Score=61.12 Aligned_cols=150 Identities=21% Similarity=0.322 Sum_probs=94.3
Q ss_pred CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCCccCCCCCCCCEEEEecCCc
Q psy12838 252 IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFVFPKNEERPLIMVGPGTG 331 (494)
Q Consensus 252 ~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~F~lp~~~~~piImIa~GtG 331 (494)
...|.|||.+-.... +++.|-+-... ..|..|.|..+.++||+|.|.||.|.+..+.. ..-++|||==|+
T Consensus 85 ~~~R~YTiR~~d~~~-~e~~vDfVlH~--------~~gpas~WA~~a~~GD~l~i~GP~g~~~p~~~-~~~~lLigDetA 154 (265)
T COG2375 85 PPQRTYTIRAVDAAA-GELDVDFVLHG--------EGGPASRWARTAQPGDTLTIMGPRGSLVPPEA-ADWYLLIGDETA 154 (265)
T ss_pred CCcccceeeeecccc-cEEEEEEEEcC--------CCCcchhhHhhCCCCCEEEEeCCCCCCCCCCC-cceEEEeccccc
Confidence 468999998654432 44444443331 37999999999999999999999999776543 678999999999
Q ss_pred chhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCeEEEecccccC---hhHHHHhhc-----cC
Q psy12838 332 IAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTFYVQHVMSRH---LPLLQDLIC-----SH 403 (494)
Q Consensus 332 IAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~~yVqd~l~~~---~~~l~~~l~-----~~ 403 (494)
+--+.++|+++-..-. ...|.-..+. .|. ..+.....++ ++-..+.. ...+...+. ..
T Consensus 155 lPAIa~iLE~lp~~~~-----~~a~lev~d~-ad~------~~l~~~~~l~--~~Wl~r~~~~~~~ll~~a~~~~~~P~~ 220 (265)
T COG2375 155 LPAIARILETLPADTP-----AEAFLEVDDA-ADR------DELPSPDDLE--LEWLARDDAPTEQLLAAALAQAALPAG 220 (265)
T ss_pred hHHHHHHHHhCCCCCc-----eEEEEEeCCh-HHh------hccCCCCcee--EEEecCCCccchHHHHHHHhcccCCCC
Confidence 9999999987654332 2466666665 333 1122222222 22222211 222222221 22
Q ss_pred CCEEEEeCCCCchHHHHHHHHHH
Q psy12838 404 QATVLIAGNANDMPTAVREVLVE 426 (494)
Q Consensus 404 ~~~vYvCGp~~~M~~~V~~~L~~ 426 (494)
+.++||-|- ..|++.++..|++
T Consensus 221 ~~~vwiagE-~~~v~~~Rk~L~~ 242 (265)
T COG2375 221 DYYVWIAGE-ASAVKAIRKFLRN 242 (265)
T ss_pred ceEEEEecc-HHHHHHHHHHHhh
Confidence 378999998 4666655555544
No 89
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=94.94 E-value=0.0039 Score=53.01 Aligned_cols=60 Identities=28% Similarity=0.365 Sum_probs=5.3
Q ss_pred cChHHHHHHhCC---C--CCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhc-C-------CCCCeEEE
Q psy12838 240 VPVEYLFELFSP---I--RPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAA-L-------NPGDSVAI 306 (494)
Q Consensus 240 ~~l~~ll~~lp~---~--~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l-------~~Gd~v~i 306 (494)
-|+|++...+|. . +.+||||+|+|.. +.+.|+|+.. |..|+.|.+ + ..+-++.|
T Consensus 31 ~pGq~v~l~~p~~s~~~~q~HPFTIas~~~~--~~i~l~ik~~-----------g~~T~~L~~~~~~~~~~~~~~~~v~i 97 (105)
T PF08022_consen 31 KPGQYVFLSFPSISKWFWQWHPFTIASSPED--NSITLIIKAR-----------GGWTKRLYEHLSESPSKQGNRLRVFI 97 (105)
T ss_dssp -------------------------------------------------------------------------------T
T ss_pred CCceEEEEEEcCcCcCcccccccEeeccCCC--CEEEEEEEeC-----------CCchHHHHHHHhhhcccCCCceEEEE
Confidence 478887776664 2 7899999999984 8999999864 566666643 2 23345777
Q ss_pred EeeCCC
Q psy12838 307 SIKRGS 312 (494)
Q Consensus 307 ~~p~G~ 312 (494)
+||+|.
T Consensus 98 dGPYG~ 103 (105)
T PF08022_consen 98 DGPYGA 103 (105)
T ss_dssp TSTTSH
T ss_pred ECCCCC
Confidence 888873
No 90
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=93.94 E-value=0.041 Score=47.76 Aligned_cols=53 Identities=26% Similarity=0.412 Sum_probs=30.6
Q ss_pred CCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCCc
Q psy12838 252 IRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSF 313 (494)
Q Consensus 252 ~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~F 313 (494)
...|.|||.+..... +++.|-|.... ..|..|.|..+.++||.|.|.+|.|.|
T Consensus 65 p~~R~YTvR~~d~~~-~~l~iDfv~Hg--------~~Gpas~WA~~A~pGd~v~v~gP~g~~ 117 (117)
T PF08021_consen 65 PVMRTYTVRRFDPET-GELDIDFVLHG--------DEGPASRWARSARPGDRVGVTGPRGSF 117 (117)
T ss_dssp -EEEEEE--EEETT---EEEEEEE--S--------S--HHHHHHHH--TT-EEEEEEEE---
T ss_pred CCCCCcCEeeEcCCC-CEEEEEEEECC--------CCCchHHHHhhCCCCCEEEEeCCCCCC
Confidence 357999999875543 56666555431 238999999999999999999999887
No 91
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=79.71 E-value=3.2 Score=43.35 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=41.6
Q ss_pred cceEEEEeeeeeeccCCCCCeEEEEEEeCCCCccccCCCeeEEccC
Q psy12838 76 FGYVKEQREEMTVLCEPALADVRHIKLKLPATLQYSPGDVLLVHPH 121 (494)
Q Consensus 76 fg~~~~v~~n~~lt~~~~~~~~~~l~l~~~~~~~y~~Gd~l~v~P~ 121 (494)
-+|.++++.|.+++.++...+++|++|+.+..+.|.||..+.|.|+
T Consensus 89 ~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~~~~f~~GQfv~I~~~ 134 (367)
T PLN03115 89 EPYTGRCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQSIGVIPD 134 (367)
T ss_pred CCeEEEEEeecccccCCCCCceEEEEEcCCCCCCcCCCCEEEEEcC
Confidence 3589999999999998888899999999877899999999999875
No 92
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=75.03 E-value=3.8 Score=40.71 Aligned_cols=41 Identities=29% Similarity=0.443 Sum_probs=36.4
Q ss_pred EeeeeeeccCCCCCeEEEEEEeCC--CCccccCCCeeEEccCC
Q psy12838 82 QREEMTVLCEPALADVRHIKLKLP--ATLQYSPGDVLLVHPHN 122 (494)
Q Consensus 82 v~~n~~lt~~~~~~~~~~l~l~~~--~~~~y~~Gd~l~v~P~N 122 (494)
++.++++|.+++.+++.+++|+++ ..+.|.||..+.|.+.+
T Consensus 2 ~~~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 44 (267)
T cd06182 2 ITVNRKLTPPDSPRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN 44 (267)
T ss_pred ccccccccCCCCCCceEEEEEecCCCCcCccCCCCEEEEecCC
Confidence 467889999999999999999998 47899999999998754
No 93
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=53.46 E-value=26 Score=37.10 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=40.6
Q ss_pred ceEEEEeeeeeeccCCCCCeEEEEEEeCCC-CccccCCCeeEEccCC
Q psy12838 77 GYVKEQREEMTVLCEPALADVRHIKLKLPA-TLQYSPGDVLLVHPHN 122 (494)
Q Consensus 77 g~~~~v~~n~~lt~~~~~~~~~~l~l~~~~-~~~y~~Gd~l~v~P~N 122 (494)
.+.++|+++.+++......+++++.|+.++ .+.|.||..+.|.++.
T Consensus 142 ~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg 188 (411)
T TIGR03224 142 PITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPG 188 (411)
T ss_pred CeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCC
Confidence 467899999999988888899999999987 6899999999998753
No 94
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=43.51 E-value=31 Score=35.49 Aligned_cols=64 Identities=27% Similarity=0.431 Sum_probs=44.4
Q ss_pred hCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCCccCCC-----CCCCCE
Q psy12838 249 FSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFVFPK-----NEERPL 323 (494)
Q Consensus 249 lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~F~lp~-----~~~~pi 323 (494)
.|...+|||-+-- |-++=.|.. .|--|.||+.|+.|+.|.+-...|.-+--. -..+|+
T Consensus 217 ~pYva~RPFRVNA------GaVhaYv~~-----------pgg~T~YLsEL~sG~eVlvVd~~G~tR~~~VGRvKIE~RPL 279 (344)
T PRK02290 217 NPYVASRPFRVNA------GAVHAYVRV-----------PGDKTRYLSELRSGDEVLVVDADGNTREAIVGRVKIEKRPL 279 (344)
T ss_pred CCCccCCCeeEec------CcceeEEEc-----------CCCcchhhHhhcCCCEEEEEeCCCCEEEEEeeEEEEeeccE
Confidence 3556777777654 344544442 488899999999999999998888644211 135899
Q ss_pred EEEecC
Q psy12838 324 IMVGPG 329 (494)
Q Consensus 324 ImIa~G 329 (494)
++|-+=
T Consensus 280 ~lIeAe 285 (344)
T PRK02290 280 LLIEAE 285 (344)
T ss_pred EEEEEE
Confidence 998763
No 95
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=38.99 E-value=40 Score=33.87 Aligned_cols=52 Identities=33% Similarity=0.460 Sum_probs=36.0
Q ss_pred CeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCCccCC-----CCCCCCEEEEecCC
Q psy12838 268 GELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFVFP-----KNEERPLIMVGPGT 330 (494)
Q Consensus 268 ~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~F~lp-----~~~~~piImIa~Gt 330 (494)
+.++-.|++ .|--|+||+.|+.||.|.|--..|.-+-. .-..+|+++|-+-.
T Consensus 262 G~VhaYi~v-----------Pg~kTkYLaEL~aGDeV~iVD~dGr~R~aiVGRvKIErRPl~lIeAey 318 (376)
T COG1465 262 GAVHAYIRV-----------PGGKTKYLAELKAGDEVLIVDFDGRTRSAIVGRVKIERRPLMLIEAEY 318 (376)
T ss_pred cceeEEEEc-----------CCCceEEhhhhcCCCeEEEEecCCceeEEEEEEEEeecCceEEEEEEe
Confidence 556666654 37889999999999999998776642211 01367888886543
No 96
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=38.95 E-value=65 Score=32.08 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=37.1
Q ss_pred ceEEEEeeeeeeccCCCCCeEEEEEEeCCCCccccCCCeeEEccC
Q psy12838 77 GYVKEQREEMTVLCEPALADVRHIKLKLPATLQYSPGDVLLVHPH 121 (494)
Q Consensus 77 g~~~~v~~n~~lt~~~~~~~~~~l~l~~~~~~~y~~Gd~l~v~P~ 121 (494)
.+.++|++...++......++.+++|+.+..+.|+||..+.|.++
T Consensus 8 ~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~ 52 (286)
T cd06208 8 PLIGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPP 52 (286)
T ss_pred CeEEEEEeceeccCCCCCcceEEEEEeCCCcccccCCceEEEECC
Confidence 356788888898876556789999999866889999999999765
No 97
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=38.63 E-value=62 Score=32.71 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=37.2
Q ss_pred ceEEEEeeeeeeccCCCCCeEEEEEEeCCCCccccCCCeeEEccCC
Q psy12838 77 GYVKEQREEMTVLCEPALADVRHIKLKLPATLQYSPGDVLLVHPHN 122 (494)
Q Consensus 77 g~~~~v~~n~~lt~~~~~~~~~~l~l~~~~~~~y~~Gd~l~v~P~N 122 (494)
.+.++|++...++.+....++.+++|+.+..+.|.||..+.|.++.
T Consensus 24 ~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~~~f~aGQy~~l~~~~ 69 (307)
T PLN03116 24 PYTATIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPG 69 (307)
T ss_pred CEEEEEEeeEEcccCCCCCceEEEEEecCCCCceecCceEeeeCCC
Confidence 3567888888887555557899999998888999999999997653
No 98
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=38.53 E-value=35 Score=35.27 Aligned_cols=65 Identities=26% Similarity=0.420 Sum_probs=44.0
Q ss_pred hCCCCCcccccccCCCCCCCeEEEEEEEEEeecCCCCCccCchhhHhhcCCCCCeEEEEeeCCCccCCC-----CCCCCE
Q psy12838 249 FSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFVFPK-----NEERPL 323 (494)
Q Consensus 249 lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~~p~G~F~lp~-----~~~~pi 323 (494)
.|...+|||-+-- +-++=.|.. .|--|+||+.|+.|++|.+-...|.-+.-. -..+|+
T Consensus 227 ~pYva~RPFRVNA------GaVHaYv~~-----------pg~kT~YLSEL~sG~~VlvVd~~G~tR~~~VGRvKIE~RPL 289 (354)
T PF01959_consen 227 SPYVASRPFRVNA------GAVHAYVLM-----------PGGKTRYLSELRSGDEVLVVDADGRTRTAIVGRVKIERRPL 289 (354)
T ss_pred CCCCCCCCceEec------CcceeEEEc-----------CCCceeehhhhcCCCEEEEEeCCCCEEEEEeeEEEEeecce
Confidence 3456778877754 334444432 478899999999999999988877533210 136899
Q ss_pred EEEecCC
Q psy12838 324 IMVGPGT 330 (494)
Q Consensus 324 ImIa~Gt 330 (494)
++|=+=+
T Consensus 290 llIeA~~ 296 (354)
T PF01959_consen 290 LLIEAEA 296 (354)
T ss_pred EEEEEEe
Confidence 9986544
No 99
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=31.28 E-value=1.3e+02 Score=27.99 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=13.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHHHh
Q psy12838 403 HQATVLIAGNANDMPTAVREVLVETIT 429 (494)
Q Consensus 403 ~~~~vYvCGp~~~M~~~V~~~L~~i~~ 429 (494)
.+..||+.|..+ +|.+.+.+.+.
T Consensus 47 ~~~~vfllG~~~----~v~~~~~~~l~ 69 (177)
T TIGR00696 47 EKLPIFLYGGKP----DVLQQLKVKLI 69 (177)
T ss_pred cCCeEEEECCCH----HHHHHHHHHHH
Confidence 456788888853 44444444443
No 100
>cd00150 PlantTI Plant trypsin inhibitors such as squash trypsin inhibitor. Plant proteinase inhibitors play important roles in natural plant defense. Proteinase inhibitors from squash seeds form an uniform family of small proteins cross-linked with three disulfide bridges.
Probab=28.17 E-value=27 Score=21.92 Aligned_cols=14 Identities=43% Similarity=0.904 Sum_probs=12.5
Q ss_pred hhhhhhcCCCCCCC
Q psy12838 11 PQTLDQCKDSSKCP 24 (494)
Q Consensus 11 ~~~~~~~~~~~~c~ 24 (494)
|.+..+|+.|+-|.
T Consensus 2 PrIlm~Ck~DsDCl 15 (27)
T cd00150 2 PRILMECKRDSDCL 15 (27)
T ss_pred cchheecccccccc
Confidence 78889999999995
No 101
>smart00286 PTI Plant trypsin inhibitors.
Probab=27.05 E-value=32 Score=21.91 Aligned_cols=15 Identities=40% Similarity=0.824 Sum_probs=13.1
Q ss_pred ChhhhhhcCCCCCCC
Q psy12838 10 FPQTLDQCKDSSKCP 24 (494)
Q Consensus 10 ~~~~~~~~~~~~~c~ 24 (494)
-|.+..+|+.|+-|.
T Consensus 3 CPrIlm~Ck~DsDCl 17 (29)
T smart00286 3 CPRILMECKRDSDCM 17 (29)
T ss_pred CchhhhccccccCcc
Confidence 378899999999995
No 102
>KOG3846|consensus
Probab=26.70 E-value=85 Score=31.98 Aligned_cols=40 Identities=20% Similarity=0.516 Sum_probs=28.2
Q ss_pred hhccCCCEEEEeCCC-CchHHHHHHHHHHHHhhhhhchHHHHHHHHHHhhc
Q psy12838 399 LICSHQATVLIAGNA-NDMPTAVREVLVETITLELQDEEEAKQYATVLIAG 448 (494)
Q Consensus 399 ~l~~~~~~vYvCGp~-~~M~~~V~~~L~~i~~~~~~~~~~~~~~~~~~~~~ 448 (494)
++......+|+||.+ .-|++.+++.+.+-+. +|+++.+-|
T Consensus 61 Lv~~d~~~iYlcGNSLGLmPK~t~~~~~~eLD----------kWak~av~g 101 (465)
T KOG3846|consen 61 LVSDDKPVIYLCGNSLGLMPKSTRNSINAELD----------KWAKCAVEG 101 (465)
T ss_pred ccCCCCCeEEEeccccccCchhhHhHHHHHHH----------HHHhhhhhc
Confidence 334456789999985 3577888888876654 677776644
No 103
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=26.39 E-value=2.4e+02 Score=24.01 Aligned_cols=93 Identities=17% Similarity=0.205 Sum_probs=52.8
Q ss_pred CEEEEecCCcchhhHHHHHHHHHcCCCCCCceEEEEeeecCCcccccHHHHHHHHHcCCCeE-EEeccc-ccChhHHHHh
Q psy12838 322 PLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTF-YVQHVM-SRHLPLLQDL 399 (494)
Q Consensus 322 piImIa~GtGIAPf~s~l~~~~~~~~~~~~~i~Lf~G~R~~~~d~ly~~el~~~~~~~~l~~-yVqd~l-~~~~~~l~~~ 399 (494)
.++|+|=-|++--+.++|+++-... ..+.|+-+.+. .|... |.. ...+++ .|...- ......+.+.
T Consensus 3 ~~ll~gDeTalPAi~~iLe~lp~~~-----~~~v~iev~~~-~d~~~---l~~---~~~~~v~wv~r~~~~~~~~~l~~a 70 (119)
T PF04954_consen 3 RYLLVGDETALPAIARILEALPADA-----PGTVFIEVPDE-ADRQP---LPA---PAGVEVTWVPRDGPAAQGSALADA 70 (119)
T ss_dssp EEEEEEEGGGHHHHHHHHHHS-TT------EEEEEEEESSG-GG-------------TEEEEEEEE-SS--TT-HHHHHH
T ss_pred eEEEEeccccHHHHHHHHHhCCCCC-----eEEEEEEECCh-Hhccc---CCC---CCCCEEEEEeCCCCCchHHHHHHH
Confidence 5799999999999999999873221 24577777766 34321 222 222221 111111 1233445544
Q ss_pred hc-----cCCCEEEEeCCCCchHHHHHHHHHHH
Q psy12838 400 IC-----SHQATVLIAGNANDMPTAVREVLVET 427 (494)
Q Consensus 400 l~-----~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (494)
+. ..+..+|+.|- ..+.+.++..|++-
T Consensus 71 l~~~~~~~~~~~vW~AgE-~~~~r~lR~~l~~~ 102 (119)
T PF04954_consen 71 LRDLPLPAGDGYVWVAGE-ASAVRALRRHLREE 102 (119)
T ss_dssp HTTS---SS-EEEEEEEE-HHHHHHHHHHHHHH
T ss_pred HHHhhccCCCeEEEEEec-HHHHHHHHHHHHHh
Confidence 43 24688999998 58888998888754
No 104
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=25.86 E-value=87 Score=32.29 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=21.9
Q ss_pred CEEEEecCCc--chhhHHHHHHHHHcC
Q psy12838 322 PLIMVGPGTG--IAPFRSYIHTRISNQ 346 (494)
Q Consensus 322 piImIa~GtG--IAPf~s~l~~~~~~~ 346 (494)
.+++.||||| |-|-+++.+++.+++
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g 29 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDN 29 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCC
Confidence 5899999998 999999999988643
No 105
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=23.78 E-value=49 Score=26.03 Aligned_cols=16 Identities=38% Similarity=0.657 Sum_probs=14.6
Q ss_pred cccCCCeeEEccCCCH
Q psy12838 109 QYSPGDVLLVHPHNRH 124 (494)
Q Consensus 109 ~y~~Gd~l~v~P~N~~ 124 (494)
.|.+||.++|..+|+.
T Consensus 5 ~~~~GD~VyViYrNPH 20 (75)
T PF11132_consen 5 PYHAGDIVYVIYRNPH 20 (75)
T ss_pred ccCCCCEEEEEEcCCC
Confidence 5999999999999984
No 106
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=23.56 E-value=1.5e+02 Score=29.60 Aligned_cols=41 Identities=20% Similarity=0.200 Sum_probs=30.1
Q ss_pred EEeeeeeeccCCCCCeEEEEEEeCCC-------CccccCCCeeEEccCC
Q psy12838 81 EQREEMTVLCEPALADVRHIKLKLPA-------TLQYSPGDVLLVHPHN 122 (494)
Q Consensus 81 ~v~~n~~lt~~~~~~~~~~l~l~~~~-------~~~y~~Gd~l~v~P~N 122 (494)
++++...++... ..++..++|..++ ...|+||+++.|.|.+
T Consensus 49 ~l~~~~~~~~~~-~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g 96 (289)
T cd06201 49 ELVERKDYGAAV-QAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPG 96 (289)
T ss_pred EEEeeeecCCCC-CCccEEEEEeCCCcccccCCCCCcCccCEEEEecCC
Confidence 455555555433 4588889999876 4789999999998754
No 107
>PF00299 Squash: Squash family serine protease inhibitor; InterPro: IPR000737 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The squash inhibitors form one of a number of serine proteinase inhibitor families. They belong to MEROPS inhibitor family I7, clan IE. They are generally annotated as either trypsin or elastase inhibitors (MEROPS peptidase family S1, IPR001254 from INTERPRO). The proteins, found exclusively in the seeds of the cucurbitaceae, e.g. Citrullus lanatus (watermelon), Cucumis sativus (cucumber), Momordica charantia (balsam pear), are approximately 30 residues in length and contain 6 Cys residues, which form 3 disulphide bonds []. The inhibitors function by being taken up by a serine protease (such as trypsin), which cleaves the peptide bond between Arg/Lys and Ile residues in the N-terminal portion of the protein [, ]. Structural studies have shown that the inhibitor has an ellipsoidal shape, and is largely composed of beta-turns []. The fold and Cys connectivity of the proteins resembles that of potato carboxypeptidase A inhibitor [].; GO: 0004867 serine-type endopeptidase inhibitor activity; PDB: 1MCT_I 2IT8_A 1HA9_A 1IB9_A 2C4B_B 2PO8_A 1F2S_I 1W7Z_H 2LET_A 2ETI_A ....
Probab=21.94 E-value=22 Score=22.68 Aligned_cols=14 Identities=43% Similarity=0.904 Sum_probs=11.4
Q ss_pred hhhhhhcCCCCCCC
Q psy12838 11 PQTLDQCKDSSKCP 24 (494)
Q Consensus 11 ~~~~~~~~~~~~c~ 24 (494)
|++..+|+.|+-|.
T Consensus 4 PrIlm~Ck~DsDCl 17 (29)
T PF00299_consen 4 PRILMECKRDSDCL 17 (29)
T ss_dssp ESBSCB-SSGGGSS
T ss_pred chhhhhcccccCcc
Confidence 77889999999995
No 108
>PF14207 DpnD-PcfM: DpnD/PcfM-like protein
Probab=21.79 E-value=38 Score=24.54 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=27.9
Q ss_pred hhHHhhhhhccccCHHHHHHHHHHHHHcCCeeEe
Q psy12838 458 REVLVKVITLELQDEEKAKQYVEQMEREGRLQTE 491 (494)
Q Consensus 458 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~~~d 491 (494)
.|.|.++.+.+-.+.++|.+.++++-..+.|++|
T Consensus 7 ~EtL~r~V~VeA~s~eeA~~~v~~~y~~~eivLd 40 (48)
T PF14207_consen 7 TETLSRVVTVEAESEEEAIEKVRDAYRNEEIVLD 40 (48)
T ss_pred EEEEEEEEEEEeCCHHHHHHHHHHHHhCCCEEcc
Confidence 3556666777778999999999999999998876
No 109
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=21.69 E-value=2.2e+02 Score=26.09 Aligned_cols=12 Identities=8% Similarity=0.390 Sum_probs=8.1
Q ss_pred cCCCEEEEeCCC
Q psy12838 402 SHQATVLIAGNA 413 (494)
Q Consensus 402 ~~~~~vYvCGp~ 413 (494)
..+..||+.|..
T Consensus 46 ~~~~~ifllG~~ 57 (172)
T PF03808_consen 46 QRGKRIFLLGGS 57 (172)
T ss_pred HcCCeEEEEeCC
Confidence 345677888875
No 110
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=21.08 E-value=2e+02 Score=23.10 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=25.0
Q ss_pred EEeeeeeeccCCCCCeEEEEEEeCCC---CccccCCCeeEEccC
Q psy12838 81 EQREEMTVLCEPALADVRHIKLKLPA---TLQYSPGDVLLVHPH 121 (494)
Q Consensus 81 ~v~~n~~lt~~~~~~~~~~l~l~~~~---~~~y~~Gd~l~v~P~ 121 (494)
+|++...++. ++..++|.+++ .+.|.||.++.|.-.
T Consensus 3 ~v~~~~~~s~-----~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~ 41 (99)
T PF00970_consen 3 KVVEIEELSP-----DVKIFRFKLPDPDQKLDFKPGQFVSVRVP 41 (99)
T ss_dssp EEEEEEEESS-----SEEEEEEEESSTTTT-SSTTT-EEEEEEE
T ss_pred EEEEEEEeCC-----CeEEEEEEECCCCcccccCcceEEEEEEc
Confidence 5666666653 67778888874 477999999998655
Done!