RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12838
(494 letters)
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler
syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET:
FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A*
1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A*
3fjo_A* 1b1c_A*
Length = 618
Score = 352 bits (904), Expect = e-115
Identities = 98/424 (23%), Positives = 174/424 (41%), Gaps = 70/424 (16%)
Query: 96 DVRHIKLKLPAT-LQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLTPSSRLRVVQKNQ 154
+ H++L + + ++Y GD + V+P N + V + ++L + + ++
Sbjct: 240 HLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILG-----ADLDVVMSLNNLDE 294
Query: 155 YMPVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTS--AEGQ 212
+ P S T+Y D+ P+ LA + EQE L + S EG+
Sbjct: 295 ESNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGK 354
Query: 213 TDLLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHL 272
L++ +R +L +L D P P+++L EL ++ R +SIASS K H +H+
Sbjct: 355 ELYLSWVVEARRHILAILQDCPSLR--PPIDHLCELLPRLQARYYSIASSSKVHPNSVHI 412
Query: 273 LVAIVKYKTKMLAPRYGLCSNYLAALNPGDS------VAISIKRGSFVFPKNEERPLIMV 326
+V+Y+TK G+ +N+L A P V + +++ F P P+IMV
Sbjct: 413 CAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMV 472
Query: 327 GPGTGIAPFRSYIHTRISNQTASAQ--RLHLFFGCRNQGADFYFNQEWQNAIQANQLT-- 382
GPGTG+APF +I R + + L++GCR D+ + +E + LT
Sbjct: 473 GPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQL 532
Query: 383 ---F--------YVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLE 431
F YVQH++ + L LI
Sbjct: 533 NVAFSREQSHKVYVQHLLKQDREHLWKLI------------------------------- 561
Query: 432 LQDEEEAKQYATVLIAGNANDMPTAVREVLVKVITLELQ-DEEKAKQYVEQMEREGRLQT 490
E A Y + G+A +M V+ ++ + +A Y++++ +GR
Sbjct: 562 ---EGGAHIY----VCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSL 614
Query: 491 ETWA 494
+ W+
Sbjct: 615 DVWS 618
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+,
oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus
norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Length = 688
Score = 325 bits (834), Expect = e-104
Identities = 95/428 (22%), Positives = 164/428 (38%), Gaps = 71/428 (16%)
Query: 96 DVRHIKLKLPAT--LQYSPGDVLLVHPHNRHSSVRKCLELLQ---DRDKPLT--PSSRLR 148
++L LQY PGD L V P N V +E L+ + +
Sbjct: 270 STIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEERN 329
Query: 149 VVQKNQYMPVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTS 208
+ P ++ Q +Y D+ P + A +E E+++L
Sbjct: 330 TALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVL-- 387
Query: 209 AEGQTDLLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSG 268
++G + + T++E+L +FP +P L S ++PR +SI+SSP +
Sbjct: 388 SKGLQEYEEWKWGKNPTMVEVLEEFPSIQ--MPATLLLTQLSLLQPRYYSISSSPDMYPD 445
Query: 269 ELHLLVAIVKYKTKMLA--PRYGLCSNYLAALNPGDSVAISIKRG-SFVFPKNEERPLIM 325
E+HL VAIV Y T+ +G+CS++L + D V ++ SF P+N + P I+
Sbjct: 446 EVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFHLPRNPQVPCIL 505
Query: 326 VGPGTGIAPFRSYIHTR---ISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT 382
VGPGTGIAPFRS+ R I ++ + + L FGCR D + +E A
Sbjct: 506 VGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFR 565
Query: 383 --------------FYVQHVMSRHL-PLLQDLICSHQATVLIAGNANDMPTAVREVLVET 427
YVQ V+ L + + + + G+
Sbjct: 566 ELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVT------------- 612
Query: 428 ITLELQDEEEAKQYATVLIAGNANDMPTAVREVLVKVITLELQ-DEEKAKQYVEQMEREG 486
M V + + +++T + + EE A ++ ++ +
Sbjct: 613 -------------------------MAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDN 647
Query: 487 RLQTETWA 494
R + +
Sbjct: 648 RYHEDIFG 655
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD,
oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB:
3qft_A*
Length = 458
Score = 316 bits (811), Expect = e-103
Identities = 98/424 (23%), Positives = 174/424 (41%), Gaps = 70/424 (16%)
Query: 96 DVRHIKLKLPAT-LQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLTPSSRLRVVQKNQ 154
+ H++L + + ++Y GD + V+P N + V + ++L + + ++
Sbjct: 80 HLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILG-----ADLDVVMSLNNLDE 134
Query: 155 YMPVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTS--AEGQ 212
+ P S T+Y D+ P+ LA + EQE L + S EG+
Sbjct: 135 ESNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGK 194
Query: 213 TDLLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHL 272
L++ +R +L +L D P P+++L EL ++ R +SIASS K H +H+
Sbjct: 195 ELYLSWVVEARRHILAILQDCPSLR--PPIDHLCELLPRLQARYYSIASSSKVHPNSVHI 252
Query: 273 LVAIVKYKTKMLAPRYGLCSNYLAALNPGDS------VAISIKRGSFVFPKNEERPLIMV 326
+V+Y+TK G+ +N+L A P V + +++ F P P+IMV
Sbjct: 253 CAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMV 312
Query: 327 GPGTGIAPFRSYIHTRISNQTASAQ--RLHLFFGCRNQGADFYFNQEWQNAIQANQLT-- 382
GPGTG+APF +I R + + L++GCR D+ + +E + LT
Sbjct: 313 GPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQL 372
Query: 383 ---F--------YVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLE 431
F YVQH++ + L LI
Sbjct: 373 NVAFSREQSHKVYVQHLLKQDREHLWKLI------------------------------- 401
Query: 432 LQDEEEAKQYATVLIAGNANDMPTAVREVLVKVITLELQ-DEEKAKQYVEQMEREGRLQT 490
E A Y + G+A +M V+ ++ + +A Y++++ +GR
Sbjct: 402 ---EGGAHIY----VCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSL 454
Query: 491 ETWA 494
+ W+
Sbjct: 455 DVWS 458
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural
motif, flattened antiparallel BE barrel, flexible hinge
region, connecting domain; HET: FAD; 1.90A {Homo
sapiens} PDB: 2qtz_A*
Length = 539
Score = 313 bits (804), Expect = e-101
Identities = 101/445 (22%), Positives = 177/445 (39%), Gaps = 84/445 (18%)
Query: 96 DVRHIKLKLPAT-LQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLTPSS-RLRVVQKN 153
++L + T Y PGD V N S V+ L+ LQ DK +++ K
Sbjct: 133 TTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQLEDKREHCVLLKIKADTKK 192
Query: 154 QYMPVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQT 213
+ +P + S++ + T+ ++ A PK+ L +T E+ +L E S +G
Sbjct: 193 KGATLPQHIPAGCSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAA 252
Query: 214 DLLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLL 273
D + +L++L FP P+ L E ++PR +S ASS H G+LH +
Sbjct: 253 DYSRFVRDACACLLDLLLAFPSCQ--PPLSLLLEHLPKLQPRPYSCASSSLFHPGKLHFV 310
Query: 274 VAIVKYKTKMLA--PRYGLCSNYLAALNP------------------GDSVAISIKR-GS 312
IV++ + R G+C+ +LA L ++I + S
Sbjct: 311 FNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASHEDSGKALAPKISIFPRTTNS 370
Query: 313 FVFPKNEERPLIMVGPGTGIAPFRSYIHTR----ISNQTASAQRLHLFFGCRNQGADFYF 368
F P + P+IMVGPGTGIAPF ++ R + + + LFFGCR++ D+ F
Sbjct: 371 FHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLF 430
Query: 369 NQEWQNAIQANQLT-----F--------------YVQHVMSRHLPLLQDLICSHQATVLI 409
+E ++ ++ LT F YVQ + H + ++ + +
Sbjct: 431 RKELRHFLKHGILTHLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYV 490
Query: 410 AGNANDMPTAVREVLVETITLELQDEEEAKQYATVLIAGNANDMPTAVREVLVKVITLEL 469
G+A +M V + LV+ I +E
Sbjct: 491 CGDAKNMAKDVHDALVQII------SKEVG------------------------------ 514
Query: 470 QDEEKAKQYVEQMEREGRLQTETWA 494
++ +A + + ++ E R + W+
Sbjct: 515 VEKLEAMKTLATLKEEKRYLQDIWS 539
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain,
FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus
norvegicus} SCOP: b.43.4.1 c.25.1.4
Length = 435
Score = 305 bits (782), Expect = 2e-99
Identities = 95/428 (22%), Positives = 166/428 (38%), Gaps = 71/428 (16%)
Query: 96 DVRHIKLKLPAT--LQYSPGDVLLVHPHNRHSSVRKCLELLQ---DRDKPLTPSSRLRVV 150
++L LQY PGD L V P N V +E L+ + +
Sbjct: 49 STIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEERN 108
Query: 151 QKNQYMP--VPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTS 208
+ + P ++ Q +Y D+ P + A +E E+++L
Sbjct: 109 TALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVL-- 166
Query: 209 AEGQTDLLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSG 268
++G + + T++E+L +FP +P L S ++PR +SI+SSP +
Sbjct: 167 SKGLQEYEEWKWGKNPTMVEVLEEFPSIQ--MPATLLLTQLSLLQPRYYSISSSPDMYPD 224
Query: 269 ELHLLVAIVKYKTKMLA--PRYGLCSNYLAALNPGDSVAISIKRG-SFVFPKNEERPLIM 325
E+HL VAIV Y T+ +G+CS++L + D V ++ SF P+N + P I+
Sbjct: 225 EVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFHLPRNPQVPCIL 284
Query: 326 VGPGTGIAPFRSYIHTR---ISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT 382
VGPGTGIAPFRS+ R I ++ + + L FGCR D + +E A
Sbjct: 285 VGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFR 344
Query: 383 -----F---------YVQHVMSRHLP-LLQDLICSHQATVLIAGNANDMPTAVREVLVET 427
+ YVQ V+ L + + + + G+
Sbjct: 345 ELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVT------------- 391
Query: 428 ITLELQDEEEAKQYATVLIAGNANDMPTAVREVLVKVITLELQ-DEEKAKQYVEQMEREG 486
M V + + +++T + + EE A ++ ++ +
Sbjct: 392 -------------------------MAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDN 426
Query: 487 RLQTETWA 494
R + +
Sbjct: 427 RYHEDIFG 434
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450
reductase, diflavin reductase, FAD, FMN-binding,
electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces
cerevisiae} PDB: 2bn4_A* 2bf4_A*
Length = 682
Score = 310 bits (797), Expect = 8e-99
Identities = 89/454 (19%), Positives = 161/454 (35%), Gaps = 104/454 (22%)
Query: 96 DVRHIKLKLPAT-LQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLTPSSRLRVVQKNQ 154
+ H + L + ++YS GD L V P N V + L + L P + + +
Sbjct: 277 NCIHSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFN-----LDPETIFDLKPLDP 331
Query: 155 YMPVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTD 214
+ VP P ++ Y ++ R F L F P+ +EKLT ++ +
Sbjct: 332 TVKVP--FPTPTTIGAAIKHYLEITGPVSRQLFSSLIQFAPNADVKEKLTLL--SKDKDQ 387
Query: 215 LLNYAHRPKRTVLEMLTDFPHA--TRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHL 272
+ + L VP+++L E + PR +SI+SS + +H+
Sbjct: 388 FAVEITSKYFNIADALKYLSDGAKWDTVPMQFLVESVPQMTPRYYSISSSSLSEKQTVHV 447
Query: 273 LVAIVKYKTKMLA---PRYGLCSNYLAALNPG--------------------------DS 303
+ + L P G+ +N L +
Sbjct: 448 TSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHYDLNGPRKLFANYK 507
Query: 304 VAISIKRGSFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQ--------RLHL 355
+ + ++R +F P N P+IM+GPGTG+APFR +I R++ + + + L
Sbjct: 508 LPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHIL 567
Query: 356 FFGCRNQGADFYFNQEWQNAIQANQLTF---------------YVQHVMSRHLPLLQDLI 400
F+G RN DF + EW + +F YVQ + + + ++I
Sbjct: 568 FYGSRNT-DDFLYQDEWPEYAKKLDGSFEMVVAHSRLPNTKKVYVQDKLKDYEDQVFEMI 626
Query: 401 CSHQATVLIAGNANDMPTAVREVLVETITLELQDEEEAKQYATVLIAGNANDMPTAVREV 460
A Y + G+A M V
Sbjct: 627 ----------------------------------NNGAFIY----VCGDAKGMAKGVSTA 648
Query: 461 LVKVITLELQ-DEEKAKQYVEQMEREGRLQTETW 493
LV +++ ++A + ++ ++ GR Q + W
Sbjct: 649 LVGILSRGKSITTDEATELIKMLKTSGRYQEDVW 682
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD
and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4;
2.15A {Bacillus megaterium} PDB: 4dqk_A*
Length = 393
Score = 294 bits (755), Expect = 7e-96
Identities = 109/420 (25%), Positives = 171/420 (40%), Gaps = 73/420 (17%)
Query: 96 DVRHIKLKLPATLQYSPGDVLLVHPHNRHSSVRKCLELLQ-DRDKPLTPSSRLRVVQKNQ 154
RH++++LP Y GD L V P N V + D + + ++ +
Sbjct: 25 STRHLEIELPKEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIR-------LEAEE 77
Query: 155 YMPVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTD 214
L K +SVE+L + +L R +A T + +L + +
Sbjct: 78 EKLAHLPLAKTVSVEELLQYV-ELQDPVTRTQLRAMAAKTVCPPHKVELEALLEKQAYKE 136
Query: 215 LLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLV 274
+ T+LE+L +P + L IRPR +SI+SSP+ + + V
Sbjct: 137 ---QVLAKRLTMLELLEKYPACE--MKFSEFIALLPSIRPRYYSISSSPRVDEKQASITV 191
Query: 275 AIVKYKTKM-LAPRYGLCSNYLAALNPGDSVAISIK--RGSFVFPKNEERPLIMVGPGTG 331
++V + G+ SNYLA L GD++ I + F PK+ E PLIMVGPGTG
Sbjct: 192 SVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQSEFTLPKDPETPLIMVGPGTG 251
Query: 332 IAPFRSYIHTRISNQTASAQRL---HLFFGCRNQGADFYFNQEWQNAIQANQLTF----- 383
+APFR ++ R Q L HL+FGCR+ D+ + +E +NA +T
Sbjct: 252 VAPFRGFVQAR-KQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGIITLHTAFS 310
Query: 384 --------YVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQDE 435
YVQHVM + L +L+ +
Sbjct: 311 RMPNQPKTYVQHVMEQDGKKLIELL----------------------------------D 336
Query: 436 EEAKQYATVLIAGNANDMPTAVREVLVKVITLELQ-DEEKAKQYVEQMEREGRLQTETWA 494
+ A Y I G+ + M AV L+K Q E A+ +++Q+E +GR + WA
Sbjct: 337 QGAHFY----ICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAKDVWA 392
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome
P450 reductase, FNR, modular protein, oxidoreductase;
HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1
c.25.1.4 PDB: 1ddi_A*
Length = 374
Score = 259 bits (664), Expect = 2e-82
Identities = 109/416 (26%), Positives = 172/416 (41%), Gaps = 89/416 (21%)
Query: 96 DVRHIKLKLPAT-LQYSPGDVLLVHPHNRHSSVRKCLELLQ-DRDKPLTPSSRLRVVQKN 153
DVRHI++ L + L+Y PGD L V N + V++ +ELL D+P+T
Sbjct: 30 DVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEG-------- 81
Query: 154 QYMPVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQT 213
K L + + ++++L E A T SE L + +
Sbjct: 82 ----------KTLPLNEALQWHFEL-TVNTANIVENYATLTRSE----TLLPLVGDKAK- 125
Query: 214 DLLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLL 273
L +YA +++M+ P + E L L P+ PR +SIASS E+H+
Sbjct: 126 -LQHYAAT--TPIVDMVRFSPAQ---LDAEALINLLRPLTPRLYSIASSQAEVENEVHVT 179
Query: 274 VAIVKYKTKMLAPRYGLCSNYLA-ALNPGDSVAISIKR-GSFVFPKNEERPLIMVGPGTG 331
V +V+Y + R G S++LA + V + I+ +F P N E P+IM+GPGTG
Sbjct: 180 VGVVRYDVE-GRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTG 238
Query: 332 IAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT-----F--- 383
IAPFR+++ R + A + LFFG + DF + EWQ ++ LT +
Sbjct: 239 IAPFRAFMQQR-AADEAPG-KNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRD 296
Query: 384 -----YVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQDEEEA 438
YVQ + L I + A
Sbjct: 297 QKEKVYVQDKLREQGAELWRWI----------------------------------NDGA 322
Query: 439 KQYATVLIAGNANDMPTAVREVLVKVITLELQ-DEEKAKQYVEQMEREGRLQTETW 493
Y + G+AN M V + L++VI D E A +++ ++ E R Q + +
Sbjct: 323 HIY----VCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 374
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase
(NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia
oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A*
1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A*
1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Length = 314
Score = 183 bits (466), Expect = 4e-54
Identities = 59/326 (18%), Positives = 111/326 (34%), Gaps = 74/326 (22%)
Query: 193 FTPSELEQEKLTEFTSAEGQTDLLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPI 252
+ L K+T A G+T + ++H + + V + + P
Sbjct: 38 YVGRCLLNTKITG-DDAPGETWHMVFSH------EGEIPYREGQSVGVIPDGEDKNGKPH 90
Query: 253 RPRAFSIASSPKTHSG---ELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIK 309
+ R +SIASS G + L V + Y G+CSN+L L PG V ++
Sbjct: 91 KLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGP 150
Query: 310 RGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQ---RLHLFFGCRNQGAD 365
G + PK+ +IM+G GTGIAPFRS++ + + LF G +
Sbjct: 151 VGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTS-SS 209
Query: 366 FYFNQEWQNAIQANQLTF------------------YVQHVMSRHLPLLQDLICSHQATV 407
+ +E++ + F Y+Q M+++ L +++ V
Sbjct: 210 LLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYV 269
Query: 408 LIAGNANDMPTAVREVLVETITLELQDEEEAKQYATVLIAGNANDMPTAVREVLVKVITL 467
+ G M + +++V +
Sbjct: 270 YMCG--------------------------------------LKGMEKGIDDIMVSLAA- 290
Query: 468 ELQDEEKAKQYVEQMEREGRLQTETW 493
+ +Y Q+++ + E +
Sbjct: 291 --AEGIDWIEYKRQLKKAEQWNVEVY 314
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A
{Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A*
3jqp_A*
Length = 316
Score = 180 bits (459), Expect = 4e-53
Identities = 38/254 (14%), Positives = 84/254 (33%), Gaps = 36/254 (14%)
Query: 217 NYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAI 276
N + ++ H L + R +SI+SS + + + +
Sbjct: 65 NNPNNQINKDHNIINTTNHTN--HNNIALSHIKKQRCARLYSISSSNNMENLSVAIKIHK 122
Query: 277 VKYKTKMLAP-RYGLCSNYLAALNPGDSVAISIKRGSFVFPKN---EERPLIMVGPGTGI 332
+ YG CS ++ L D + ++ G F P + + I + GTGI
Sbjct: 123 YEQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHGYFNLPNDAIQKNTNFIFIATGTGI 182
Query: 333 APFRSYIHTRISNQTASAQ--------RLHLFFGCRNQGADFYFNQEWQNAIQANQLTF- 383
+P+ S++ + + + +++G N+ + E + +
Sbjct: 183 SPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNE-DSILYLNELEYFQKMYPNNIN 241
Query: 384 ----------------YVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVET 427
YVQ + + +L +++ + I G + V ++L
Sbjct: 242 IHYVFSYKQNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGKK-SIRYKVMDILKSH 300
Query: 428 ITLELQDEEEAKQY 441
DE++ K+
Sbjct: 301 DQF---DEKKKKRV 311
Score = 27.8 bits (62), Expect = 7.5
Identities = 7/58 (12%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 96 DVRHIKLKLPATLQYSPGDVLLVHPHNR------HSSVRKCLELLQDRDKPLTPSSRL 147
+V H+++ +Y G + P+ ++ + K ++ + + L
Sbjct: 34 EVYHLEINHNGLFKYLEGHTCGIIPYYNELDNNPNNQINKDHNIINTTNHTNHNNIAL 91
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR,
reductase reductase, phycobilisome, thylakoid; HET: FAD;
1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A*
2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A*
1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A*
1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Length = 304
Score = 179 bits (456), Expect = 9e-53
Identities = 58/331 (17%), Positives = 99/331 (29%), Gaps = 78/331 (23%)
Query: 193 FTPSELEQEKLTEFTSAEGQTDLLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPI 252
F + E L + + +E + + + P
Sbjct: 22 FIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIE----GQSIG--IIPPGVDKNGKPE 75
Query: 253 RPRAFSIASSPK---THSGELHLLVAIVKYKTKMLA-PRYGLCSNYLAALNPGDSVAISI 308
+ R +SIAS+ + L V ++YK YG+CS YL + PG V I+
Sbjct: 76 KLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITG 135
Query: 309 KRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQ-------RLHLFFGCR 360
G + P + E +IM+ GTGI P R+Y+ + +A L FG
Sbjct: 136 PVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVP 195
Query: 361 NQGADFYFNQEWQNAIQANQLTF------------------YVQHVMSRHLPLLQDLICS 402
+ + +E + Q F Y+Q ++ H L LI +
Sbjct: 196 TT-PNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKN 254
Query: 403 HQATVLIAGNANDMPTAVREVLVETITLELQDEEEAKQYATVLIAGNANDMPTAVREVLV 462
+ I G M + L
Sbjct: 255 QKTHTYICGPPP--------------------------------------MEEGIDAALS 276
Query: 463 KVITLELQDEEKAKQYVEQMEREGRLQTETW 493
++ Y + +++ GR ET+
Sbjct: 277 AAAA---KEGVTWSDYQKDLKKAGRWHVETY 304
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase,
FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB:
3lvb_A* 1jb9_A*
Length = 311
Score = 173 bits (439), Expect = 3e-50
Identities = 51/303 (16%), Positives = 98/303 (32%), Gaps = 78/303 (25%)
Query: 226 VLEMLTDFPHATRA-----VPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYK 280
V++ + P+ P E + +P R +SIAS+ + + V+
Sbjct: 52 VIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRA 111
Query: 281 TKMLAP-------RYGLCSNYLAALNPGDSVAISIKRGSFVF--PKNEERPLIMVGPGTG 331
+ G+CSN+L PGD + ++ G + ++ IM+ GTG
Sbjct: 112 VYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEEDPNATHIMIATGTG 171
Query: 332 IAPFRSYIHTRISNQTASAQ---RLHLFFGCRNQGADFYFNQEWQNAIQANQLTF----- 383
+APFR Y+ + + LF G N +++E+ + ++ F
Sbjct: 172 VAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANS-DSLLYDEEFTSYLKQYPDNFRYDKA 230
Query: 384 -------------YVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITL 430
YVQ + + + L+
Sbjct: 231 LSREQKNRSGGKMYVQDKIEEYSDEIFKLL------------------------------ 260
Query: 431 ELQDEEEAKQYATVLIAGNANDMPTAVREVLVKVITLELQDEEKAKQYVEQMEREGRLQT 490
+ A Y G M +++ L KV + E Q + Q+++ +
Sbjct: 261 ----DGGAHIY----FCGLKG-MMPGIQDTLKKVAE---RRGESWDQKLAQLKKNKQWHV 308
Query: 491 ETW 493
E +
Sbjct: 309 EVY 311
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A
{Leptospira interrogans} PDB: 2rc6_A*
Length = 314
Score = 166 bits (421), Expect = 2e-47
Identities = 46/325 (14%), Positives = 90/325 (27%), Gaps = 68/325 (20%)
Query: 194 TPSELEQEKLTEFTSAEGQTDLLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIR 253
TP ++ + A +L H V+ +
Sbjct: 33 TPETGTGKRPKKEGEALVHRIVLAIDHSAYPYVIGQSGGVIPPGEDPEKKAKGLADVGYT 92
Query: 254 PRAFSIASSPK---THSGELHLLVAIVKYKTKML-APRYGLCSNYLAALNPGDSVAISIK 309
R +SIAS + ++ + G+CSNY+ L PGD V ++
Sbjct: 93 VRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKPGDEVTMTGP 152
Query: 310 RGS-FVFPKN-EERPLIMVGPGTGIAPFRSYIHTRISNQTASAQ-RLHLFFGCRNQGADF 366
G F+ P ++ + GTGIAPF + ++ + L +G +
Sbjct: 153 SGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHKLIKFTGNITLVYGAPYS-DEL 211
Query: 367 YFNQEWQNAIQANQLT------------------FYVQHVMSRHLPLLQDLICSHQATVL 408
+ ++ Y+ H + ++ ++
Sbjct: 212 VMMDYLKGLESKHKNFKLITAISREEKNSFDGGRMYISHRVREQAEAVKKIL-------- 263
Query: 409 IAGNANDMPTAVREVLVETITLELQDEEEAKQYATVLIAGNANDMPTAVREVLVKVITLE 468
+ Y I G M V E + K+
Sbjct: 264 --------------------------NGGGRFY----ICGGPKGMEKGVIEEIQKIS--- 290
Query: 469 LQDEEKAKQYVEQMEREGRLQTETW 493
+ +++ +E +L ET+
Sbjct: 291 -GNTGTYEEFKHHLEGAHQLFVETY 314
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase;
HET: FAD; 2.50A {Synechococcus SP}
Length = 402
Score = 167 bits (425), Expect = 3e-47
Identities = 68/409 (16%), Positives = 126/409 (30%), Gaps = 77/409 (18%)
Query: 113 GDVLLVHPHNRHSSVRKCLELLQDRDKPLTP-SSRLRVVQKNQYMPVPYALRKPLSVEQL 171
G + P+ R + + + L + + P ++V + Q A S ++
Sbjct: 43 GTTFITVPYARMNQEMQRITKLGGKIVSIRPAEDAAQIVSEGQSSAQASAQSPMASSTKI 102
Query: 172 ATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDLLNYAHRPKRTVLEMLT 231
+ P + F +E +L + + + LE
Sbjct: 103 VHPKTTDTSVPVN-IYRPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLE--- 158
Query: 232 DFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSG---ELHLLVAIVKYKTKMLA-PR 287
+ + P + R +SIAS+ + L V ++Y+
Sbjct: 159 -GQSIG--IIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESGETV 215
Query: 288 YGLCSNYLAALNPG-DSVAISIKRGS-FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISN 345
YG+CS YL L G D V I+ G + P +E+ ++M+ GTGIAPFR+++
Sbjct: 216 YGVCSTYLCNLPVGTDDVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKE 275
Query: 346 QTASAQ---RLHLFFGCRNQGADFYFNQEWQNAIQANQLTF------------------Y 384
Q + + L FG A+ + +++ N F Y
Sbjct: 276 QHEDYKFKGKAWLIFGVPYT-ANILYKDDFEKMAAENPDNFRLTYAISREQKTADGGKVY 334
Query: 385 VQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQDEEEAKQYATV 444
VQ +S + L ++I V + G
Sbjct: 335 VQSRVSEYADELFEMIQKPNTHVYMCG--------------------------------- 361
Query: 445 LIAGNANDMPTAVREVLVKVITLELQDEEKAKQYVEQMEREGRLQTETW 493
M + E + ++ M++E R E +
Sbjct: 362 -----LKGMQPPIDETFTAEAE---KRGLNWEEMRRSMKKEHRWHVEVY 402
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase
superfami oxidoreductase; 2.20A {Escherichia coli} SCOP:
b.43.4.2 c.25.1.1
Length = 232
Score = 89.5 bits (223), Expect = 1e-20
Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 38/190 (20%)
Query: 255 RAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYL-AALNPGDSVAISIKRGSF 313
R FS+AS+P G + L + L + + + + + I G
Sbjct: 46 RPFSMASTP-DEKGFIELHIGAS--------EI-NLYAKAVMDRILKDHQIVVDIPHGEA 95
Query: 314 VFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQ 373
+EERP+I++ GTG + RS + T ++ + + +++G R + Y E +
Sbjct: 96 WLRDDEERPMILIAGGTGFSYARSILLTALARN--PNRDITIYWGGREE-QHLYDLCELE 152
Query: 374 N-AIQANQLTF----------------YVQHVMSRHLPLLQDLICSHQATVLIAGNANDM 416
+++ L V + + L + H + IAG +M
Sbjct: 153 ALSLKHPGLQVVPVVEQPEAGWRGRTGTVLTAVLQDHGTLAE----HD--IYIAGRF-EM 205
Query: 417 PTAVREVLVE 426
R++
Sbjct: 206 AKIARDLFCS 215
>1tvc_A Methane monooxygenase component C, methane monooxygenase;
FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR
{Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Length = 250
Score = 89.6 bits (223), Expect = 2e-20
Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 15/139 (10%)
Query: 254 PRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLA-ALNPGDSVAISIKRGS 312
R++S A+ P G L L+ ++L G S+YL G +++ G
Sbjct: 60 SRSYSPANLP-NPEGRLEFLI-------RVLPE--GRFSDYLRNDARVGQVLSVKGPLGV 109
Query: 313 FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEW 372
F + P V GTG+AP S + + + ++FG + + ++ E
Sbjct: 110 FGLKERGMAPRYFVAGGTGLAPVVSMVRQMQ--EWTAPNETRIYFGVNTE-PELFYIDEL 166
Query: 373 QNAIQANQLTFYVQHVMSR 391
+ +++ + V+ +
Sbjct: 167 K-SLERSMRNLTVKACVWH 184
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding,
ferredoxin, NADH-binding, oxidoreductase; HET: FAD;
1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2
d.15.4.2
Length = 338
Score = 85.9 bits (213), Expect = 1e-18
Identities = 43/186 (23%), Positives = 70/186 (37%), Gaps = 29/186 (15%)
Query: 253 RPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYL-AALNPGDSVAISIKRG 311
R++S +S P + +V V G S YL GD ++ + G
Sbjct: 154 ETRSYSFSSQP--GNRLTGFVVRNV---------PQGKMSEYLSVQAKAGDKMSFTGPFG 202
Query: 312 SFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQE 371
SF + ++ +RP++M+ GTGIAPF S + S + L FG D ++
Sbjct: 203 SF-YLRDVKRPVLMLAGGTGIAPFLSMLQVLEQKG--SEHPVRLVFGVTQD-CDLVALEQ 258
Query: 372 WQNAIQANQLTFYVQHVMSR-----------HLPLLQDLICSHQATVLIAGNANDMPTAV 420
A+Q F + V++ + D + + V + G M AV
Sbjct: 259 LD-ALQQKLPWFEYRTVVAHAESQHERKGYVTGHIEYDWLNGGEVDVYLCGPV-PMVEAV 316
Query: 421 REVLVE 426
R L
Sbjct: 317 RSWLDT 322
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase,
flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP:
b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Length = 248
Score = 74.6 bits (184), Expect = 3e-15
Identities = 35/143 (24%), Positives = 52/143 (36%), Gaps = 17/143 (11%)
Query: 251 PIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKR 310
++ RA+S +SP + +L + V G S LAAL PGD V + +
Sbjct: 47 RVQ-RAYSYVNSP--DNPDLEFYLVTVPD---------GKLSPRLAALKPGDEVQVVSEA 94
Query: 311 GSFVFPKN--EERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYF 368
F L M+ GT I P+ S + L L R AD +
Sbjct: 95 AGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLDRFK--NLVLVHAARYA-ADLSY 151
Query: 369 NQEWQNAIQANQLTFYVQHVMSR 391
Q + + +Q V+SR
Sbjct: 152 LPLMQELEKRYEGKLRIQTVVSR 174
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme,
oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A
{Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Length = 270
Score = 72.9 bits (179), Expect = 1e-14
Identities = 31/147 (21%), Positives = 50/147 (34%), Gaps = 12/147 (8%)
Query: 255 RAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFV 314
RA++ S G LLV + P GL + YL +L G + + G
Sbjct: 62 RAYTPTSMVDEI-GHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVE 120
Query: 315 FP----------KNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGA 364
+ + R L M+ G+GI P I + +Q +HL + R +
Sbjct: 121 YTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTE-D 179
Query: 365 DFYFNQEWQNAIQANQLTFYVQHVMSR 391
D E V +V+ +
Sbjct: 180 DILLRDELDRWAAEYPDRLKVWYVIDQ 206
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas
aeruginosa} PDB: 3crz_A* 1a8p_A*
Length = 257
Score = 72.5 bits (178), Expect = 2e-14
Identities = 38/202 (18%), Positives = 67/202 (33%), Gaps = 41/202 (20%)
Query: 251 PIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKR 310
P+ RA+SIAS E HL +K G ++ L L GD + +S K
Sbjct: 47 PLM-RAYSIASPN----YEEHLEFFSIKVPD-------GPLTSRLQHLKEGDELMVSRKP 94
Query: 311 GSFVFPKNEE--RPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYF 368
+ + + L ++ GTG+APF S I +++ L G R ++ +
Sbjct: 95 TGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDP--ETYERYEKVILVHGVRWV-SELAY 151
Query: 369 NQEWQNAIQANQL-------TFYVQHVMSR----HLPLLQDLICSHQATVLIAGNAND-- 415
+ ++ +++R + DL+ S + I +
Sbjct: 152 ADFITKVLPEHEYFGDQVKEKLIYYPLVTREPFRNQGRQTDLMRSGKLFEDIGLPPMNPQ 211
Query: 416 -----------MPTAVREVLVE 426
M VL
Sbjct: 212 DDRAMICGSPSMLEETSAVLDS 233
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H)
reductase, flavoproteins, electron transfer,
oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter
capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Length = 272
Score = 69.9 bits (171), Expect = 2e-13
Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 16/142 (11%)
Query: 255 RAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFV 314
RA+SIAS + L +K G ++ L + G+ + + K +
Sbjct: 64 RAYSIASPA----WDEELEFYSIKVPD-------GPLTSRLQHIKVGEQIILRPKPVGTL 112
Query: 315 FPKNEE--RPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEW 372
+ L + GTGIAPF S + + + + + CR A+ + ++
Sbjct: 113 VIDALLPGKRLWFLATGTGIAPFASLMREPEAYE--KFDEVIMMHACRTV-AELEYGRQL 169
Query: 373 QNAIQANQLTFYVQHVMSRHLP 394
A+Q + L + ++ P
Sbjct: 170 VEALQEDPLIGELVEGKLKYYP 191
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta
sheet, helix-FLA five-stranded parallel beta sheet,
lipid binding protein; HET: HEM FAD DGG; 1.75A
{Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Length = 403
Score = 69.4 bits (170), Expect = 6e-13
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 11/119 (9%)
Query: 254 PRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYL-AALNPGDSVAISIKRGS 312
R +S++ P + + VK + P G SN L +N GD V ++ GS
Sbjct: 205 IRQYSLSDMPNGRTYRIS-----VKREGGGPQPP-GYVSNLLHDHVNVGDQVKLAAPYGS 258
Query: 313 FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQE 371
F + + P++++ G G+ P S + + A +++ G RN A
Sbjct: 259 FHIDVDAKTPIVLISGGVGLTPMVSMLKVAL---QAPPRQVVFVHGARN-SAVHAMRDR 313
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural
genomics, national institute allergy and infectious
diseases; HET: FAD; 2.10A {Burkholderia thailandensis}
PDB: 4f7d_A*
Length = 271
Score = 67.5 bits (165), Expect = 9e-13
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 17/133 (12%)
Query: 251 PIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKR 310
P+ RA+SI S E HL +K + G ++ L L GD V I K
Sbjct: 63 PLT-RAYSIVSPN----YEEHLEFFSIKVQN-------GPLTSRLQHLKVGDPVLIGKKP 110
Query: 311 GSFVFPKNEE--RPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYF 368
+ N + L M+ GTG+APF S I + ++ L CR + + +
Sbjct: 111 TGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYERFD--KVVLTHTCRLK-GELAY 167
Query: 369 NQEWQNAIQANQL 381
++ + ++
Sbjct: 168 MDYIKHDLPGHEY 180
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit;
alpha-beta-alpha sandwich, structural genomics, PSI-2;
HET: FAD; 2.95A {Porphyromonas gingivalis}
Length = 290
Score = 67.6 bits (165), Expect = 1e-12
Identities = 32/151 (21%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 253 RPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRY---------GLCSNYLAALNPGDS 303
RA+S+A+ P E +++ V+ T G+ S+Y+ +L PGD
Sbjct: 85 TVRAYSMANYP----AEGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGDK 140
Query: 304 VAISIKRGSFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQG 363
V +S G F + ++ +G G G+AP R+ I + +++ ++G R++
Sbjct: 141 VMMSGPYGDFHIQDT-DAEMLYIGGGAGMAPLRAQILHLFRTL-KTGRKVSYWYGARSK- 197
Query: 364 ADFYFNQEWQNAIQANQLTFYVQHVMSRHLP 394
+ ++ ++++ I+ F +S P
Sbjct: 198 NEIFYEEDFR-EIEREFPNFKFHIALSDPQP 227
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain,
NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum
polycephalum}
Length = 243
Score = 66.5 bits (163), Expect = 1e-12
Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 19/140 (13%)
Query: 255 RAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFV 314
R ++ SS G L++ + Y+ G S Y+ LNPGD + + +G F
Sbjct: 61 RPYTPVSSD-DEKGYFDLIIKV--YEK-------GQMSQYIDHLNPGDFLQVRGPKGQFD 110
Query: 315 FPKNEERPLIMVGPGTGIAPFRS---YIHTRISNQTASAQRLHLFFGCRNQGADFYFNQE 371
+ N + + M+ GTGI P I +T ++L F N+ D E
Sbjct: 111 YKPNMVKEMGMIAGGTGITPMLQVARAIIKNPKEKT----IINLIFANVNE-DDILLRTE 165
Query: 372 WQNAIQANQLTFYVQHVMSR 391
+ + F V +V++
Sbjct: 166 L-DDMAKKYSNFKVYYVLNN 184
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel,
FAD-binding domain, NADH-binding domain, oxidoreductase;
HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1
PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Length = 275
Score = 64.0 bits (156), Expect = 1e-11
Identities = 29/153 (18%), Positives = 53/153 (34%), Gaps = 19/153 (12%)
Query: 255 RAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFV 314
R ++ SS G + L++ + T P G S YL ++ GD++ G V
Sbjct: 66 RPYTPISSDDD-KGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLV 124
Query: 315 FPKNEE----------------RPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFG 358
+ + + + M+ GTGI P I + + HL F
Sbjct: 125 YQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKD-PDDHTVCHLLFA 183
Query: 359 CRNQGADFYFNQEWQNAIQANQLTFYVQHVMSR 391
+ + D E + + F + + + R
Sbjct: 184 NQTE-KDILLRPELEELRNKHSARFKLWYTLDR 215
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD,
iron transpor; HET: FAD HEM; 2.19A {Escherichia coli}
SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Length = 396
Score = 64.7 bits (158), Expect = 2e-11
Identities = 32/191 (16%), Positives = 55/191 (28%), Gaps = 34/191 (17%)
Query: 254 PRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYL-AALNPGDSVAISIKRGS 312
R +S+ P + VK G SN+L N GD V + G
Sbjct: 203 IRQYSLTRKPDGKGYRIA-----VK------REEGGQVSNWLHNHANVGDVVKLVAPAGD 251
Query: 313 FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEW 372
F ++ P+ ++ G G P + + T + +++ F N G F E
Sbjct: 252 FFMAVADDTPVTLISAGVGQTPMLAMLDTLA--KAGHTAQVNWFHAAEN-GDVHAFADE- 307
Query: 373 QNAIQANQLTFYVQHVMSRH-----------------LPLLQDLICSHQATVLIAGNAND 415
+ + F + L L+ + G
Sbjct: 308 VKELGQSLPRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFSDPTMQFYLCGPVGF 367
Query: 416 MPTAVREVLVE 426
M + LV+
Sbjct: 368 M-QFTAKQLVD 377
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 2e-08
Identities = 58/288 (20%), Positives = 82/288 (28%), Gaps = 116/288 (40%)
Query: 139 KPLTPSS-RLRVVQKNQYMPVPYALRKPLSVEQL-ATFYWDLNATPKRYA--------FE 188
+PLT S L V + VP A QL F L + +A E
Sbjct: 7 RPLTLSHGSLEHV-----LLVPTASF--FIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
Query: 189 VLAHF---TPSELEQEKLTEFTSAEGQTDLLNYAHRPKRTVLE-MLTDFPHATRAVPVEY 244
++ F S +E K+ +F VL LT+F + Y
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQ-----------------VLNLCLTEFENC-------Y 95
Query: 245 LFELFSPIRPRAFSIASSPKTHSGELHLLVA-IVKYKTKMLAPRYGLCSNYLAALNPGDS 303
L ++H L A +++ L L NY+ A
Sbjct: 96 L--------------------EGNDIHALAAKLLQENDTTLVKTKELIKNYITAR----- 130
Query: 304 VAISIKRGSFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLF--FGCRN 361
I KR F K L FR+ L FG
Sbjct: 131 --IMAKRP---FDKKSNSAL-----------FRA----------VGEGNAQLVAIFG--G 162
Query: 362 QG-ADFYFNQEWQNAIQANQLTFYVQHVMSRHLPLLQDLICSHQATVL 408
QG D YF +E ++ Y + L+ DLI T+
Sbjct: 163 QGNTDDYF-EELRD--------LY-----QTYHVLVGDLIKFSAETLS 196
Score = 50.8 bits (121), Expect = 9e-07
Identities = 88/524 (16%), Positives = 141/524 (26%), Gaps = 185/524 (35%)
Query: 11 PQTLDQCKDSSKCPYQGVVKTDRCWGYEPHCNQHTAYSYPLCPGEHKGWVKSKAAQFDTF 70
TL + K+ K + R P + ++
Sbjct: 113 DTTLVKTKELIKNYITARIMAKR----------------PFDKKSNSALFRAVGEGNAQL 156
Query: 71 YRQADFG-------YVKEQREEMTVLCE---PALADVRHIKLKLPATLQYSPGDVLLVHP 120
A FG Y +E R+ L + + D+ + + L + D V
Sbjct: 157 V--AIFGGQGNTDDYFEELRD----LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 121 HNRHSSVRKCLELLQDRDKPLTPSSRLRVVQKNQYMP-VPYALRKPLS-VEQLATFYWDL 178
+ LE L++ TP Y+ +P + PL V QLA +
Sbjct: 211 QGLNI-----LEWLENPSN--TPD--------KDYLLSIPISC--PLIGVIQLAHYV--- 250
Query: 179 NATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDLLNYAHRPKRTVLEMLTDFPHATR 238
T K L FTP EL + A G + L A + +
Sbjct: 251 -VTAK------LLGFTPGEL----RSYLKGATGHSQGLVTA-----VAIAETDSWESFFV 294
Query: 239 AVP--VEYLF-------ELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYG 289
+V + LF E + + S + + E + ML+
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE--NNE--------GVPSPMLSIS-N 343
Query: 290 LCS----NYLAALN---PGDS-VAISIKRG--SFV---FPKN------------------ 318
L +Y+ N P V IS+ G + V P++
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 319 ------EERPLIMVG---PGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFN 369
ER L P +PF H+ + + L + FN
Sbjct: 404 QSRIPFSERKLKFSNRFLPVA--SPF----HSHLLVPASDLINKDL------VKNNVSFN 451
Query: 370 QEWQNAIQANQLTFYVQHVMS----RHL-----PLLQDLICSH----------QAT---- 406
A + V R L + D I +AT
Sbjct: 452 --------AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503
Query: 407 ----------VLIAGNANDMPTAVREVLVETITLELQDEEEAKQ 440
VL N + T VR ++ T+ + D+ KQ
Sbjct: 504 FGPGGASGLGVLTHRNKDG--TGVRVIVAGTLDINPDDDYGFKQ 545
Score = 44.3 bits (104), Expect = 1e-04
Identities = 41/239 (17%), Positives = 75/239 (31%), Gaps = 85/239 (35%)
Query: 131 LELLQDRDKPLT---PSSRLRVVQKNQYMPVPYALRKPLSVEQLATFYWDLNATPKRYAF 187
L+++ + LT + + +++N Y + + ++ F ++N Y F
Sbjct: 1662 LDIVINNPVNLTIHFGGEKGKRIREN-YSAMIFETIVDGKLKTEKIFK-EINEHSTSYTF 1719
Query: 188 EVLAHFTPSE-LEQEKLTEFTSAEGQTDLLNYAHRPKRTVLEMLTDFPHATRAVPVEY-L 245
+ L T+FT Q P + +E
Sbjct: 1720 R-----SEKGLL---SATQFT----Q---------PA-----LTL----------MEKAA 1743
Query: 246 FELFSPIRPRAFSIASSPKT---HS-GELHLLVAIVKYKTKMLAPRYG-LCSNYLA-ALN 299
FE ++ + + T HS GE Y L S LA ++
Sbjct: 1744 FEDL-----KSKGLIPADATFAGHSLGE------------------YAALAS--LADVMS 1778
Query: 300 PGDSVAISIKRGSFV---FPKNEERP----LIMVGPGTGIAPFR----SYIHTRISNQT 347
V + RG + P++E +I + PG A F Y+ R+ +T
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of
allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio
cholerae o1 biovar el tor}
Length = 243
Score = 48.4 bits (116), Expect = 2e-06
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 254 PRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYL-AALNPGDSVAISIKRGS 312
R +S++ + ++ VK + GL S+YL + GDSV + G
Sbjct: 54 IRQYSLSHAS----NGREYRIS-VKREGVGSDNP-GLVSHYLHNNVKVGDSVKLYAPAGD 107
Query: 313 FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQE 371
F F ERP++++ G G P ++ +HT + + + C + + F QE
Sbjct: 108 F-FYVERERPVVLISAGVGATPMQAILHTLAKQ---NKSGVTYLYACNS-AKEHTFAQE 161
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 1e-05
Identities = 61/426 (14%), Positives = 120/426 (28%), Gaps = 123/426 (28%)
Query: 94 LADVRHIK-LK--------LPATLQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLTPS 144
L +V++ K L T D L S+ L LTP
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL--------SAATTTHISLDHHSMTLTPD 301
Query: 145 SRLRVVQKNQYMPV---PYALRK--PLSVEQLATFYWDLNATPKRY----------AFEV 189
++ K P + P + +A D AT + E
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 190 -LAHFTPSELEQ--EKLTEFTSAEGQTDLLNYAHRPKRTVLEMLTDFPHATRAVPVEYLF 246
L P+E + ++L+ F AH P +L ++ + ++ + +
Sbjct: 362 SLNVLEPAEYRKMFDRLSVF-----PPS----AHIPTI-LLSLI--WFDVIKSDVMVVVN 409
Query: 247 ELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAI 306
+L + + PK + + + ++ K K+ Y L + + N
Sbjct: 410 KLH-----KYSLVEKQPKESTISIPSI--YLELKVKLEN-EYALHRSIVDHYN------- 454
Query: 307 SIKRGSFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADF 366
I + F ++ P Y ++ I + + + R
Sbjct: 455 -IPKT---FDSDDLIPP----------YLDQYFYSHIGHHLKNIEHPERMTLFRM----V 496
Query: 367 YFNQEW-QNAIQANQLTFYVQHVMSRHLPLLQDL------ICSHQATVLIAGNANDMPTA 419
+ + + + I+ + L LQ L IC +
Sbjct: 497 FLDFRFLEQKIRH---DSTAWNASGSILNTLQQLKFYKPYICDNDPK------------- 540
Query: 420 VREVLVETITLELQDEEEAKQYATVLIAGNANDMPTAVREVLVKVITLELQDEEKAKQYV 479
E LV I + + LI D ++ + L E++A
Sbjct: 541 -YERLVNAI------LDFLPKIEENLICSKYTD-----------LLRIALMAEDEA--IF 580
Query: 480 EQMERE 485
E+ ++
Sbjct: 581 EEAHKQ 586
Score = 31.4 bits (70), Expect = 0.90
Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 37/123 (30%)
Query: 377 QANQLTFYVQHVMSRHLP-LLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQDE 435
+ + + + ++S + + C D+ + +L +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDC------------KDVQDMPKSIL---------SK 48
Query: 436 EEAKQYATVLIAGNANDMPTAVREVLVKVITLELQDEEKAKQYVEQMERE------GRLQ 489
EE +++ AV L TL + EE +++VE++ R ++
Sbjct: 49 EEIDH---IIM------SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 490 TET 492
TE
Sbjct: 100 TEQ 102
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer,
alpha-beta barrel, beta sandwich, FAD domain alpha/beta
NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Length = 262
Score = 45.3 bits (108), Expect = 2e-05
Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 22/123 (17%)
Query: 250 SPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIK 309
+ + R SI+S K +L I + L+ L G V +
Sbjct: 48 AMLLRRPISISSWDKRA-KTCTILYRIGDE---------TTGTYKLSKLESGAKVDV--- 94
Query: 310 RG----SFVFPKNEE-RPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGA 364
G F + ++++G G G+ P + ++ ++ + G ++
Sbjct: 95 MGPLGNGFPVAEVTSTDKILIIGGGIGVPPLY-ELAKQLEKT---GCQMTILLGFASENV 150
Query: 365 DFY 367
Sbjct: 151 KIL 153
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 34.1 bits (78), Expect = 0.030
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 293 NYLAALNPGDSVAISIKRGSF-----VFPKNEERPLIMVGPGTGI 332
L ++ G+ + I+ +G+F P N R + + +
Sbjct: 64 AALKTISVGEVINITTDQGTFHLKTGRNPNNSSRAYMGIRTSNHL 108
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia
cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Length = 321
Score = 33.7 bits (78), Expect = 0.13
Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 6/110 (5%)
Query: 292 SNYL-AALNPGDSVAISIKRGSFVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASA 350
S + GD+V +S+ R F + I+V G GI P S +
Sbjct: 83 SISFIDDTSEGDAVEVSLPRNEFP-LDKRAKSFILVAGGIGITPMLSMARQL---RAEGL 138
Query: 351 QRLHLFFGCRNQGADFYFNQEWQNAIQANQLTFYVQHVMSRHLPLLQDLI 400
+ L++ R+ F E + + + + H +
Sbjct: 139 RSFRLYYLTRDP-EGTAFFDELTSDEWRSDVKIHHDHGDPTKAFDFWSVF 187
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 31.6 bits (72), Expect = 0.38
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 413 ANDMPTAVREVLVETITLELQDEEEAKQYATVLIAGNANDMPTAVREVLVKVITLELQ 470
+ V++V E + L D K ++LIA N D+ A L++ LE +
Sbjct: 88 SAAFQREVKDV-AEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQ-LEKE 143
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Length = 84
Score = 29.1 bits (66), Expect = 0.66
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 446 IAGNANDMPTAVREVLV-KVITLELQ--DEEKAKQYVEQMER 484
+ G D+ V EV V KV+ + + +A++ + M
Sbjct: 24 VEGVLKDLGHPVEEVRVGKVLEIVFPAENLLEAEEKAKAMGA 65
>2gpj_A Siderophore-interacting protein; structural genomics, joint for
structural genomics, JCSG; HET: FAD; 2.20A {Shewanella
putrefaciens}
Length = 252
Score = 30.0 bits (67), Expect = 1.7
Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 289 GLCSNYLAALNPGDSVAISIKRGSFVFPKNEERPLIMVGPGTGIAPFRSYIHT 341
G S++ G+ + I + + ++ G T + +
Sbjct: 82 GPASSWAKTAQVGELIQIGGPGLKKLINFEADW-FLLAGDMTALPAISVNLAK 133
>2zw2_A Putative uncharacterized protein STS178; purine metabolism, ligase;
1.55A {Sulfolobus tokodaii}
Length = 92
Score = 28.0 bits (63), Expect = 2.1
Identities = 4/29 (13%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 457 VREVLV-KVITLELQ--DEEKAKQYVEQM 482
+ E K + + +++A + V+++
Sbjct: 38 IIETRAGKYLVFRVNSSSQQEATELVKKL 66
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane,
transmembra membrane protein, signaling protein; 1.99A
{Mus musculus} PDB: 3ryt_A*
Length = 627
Score = 29.7 bits (66), Expect = 2.5
Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
Query: 158 VPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDLLN 217
+ YA P + +Y D+ ++ A+ E + +F ++L
Sbjct: 531 LLYAKDIPNYKSWVERYYRDIAKMASISDQDMDAYL--VEQSRLHANDFNVLSALSELYF 588
Query: 218 YAHRPKRTVLEMLTDFPHATR 238
Y + ++ +L L +
Sbjct: 589 YVTKYRQEILTSLDRDASCRK 609
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 2.6
Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 19/55 (34%)
Query: 430 LELQDEEEAKQYATVLIAGNANDMPTAVREVLVKVITLELQDEEKAKQYVEQMER 484
L+ D + + +L EE ++ EQ+E+
Sbjct: 98 LQELDAASKVM-----------------EQEWREKAKKDL--EEWNQRQSEQVEK 133
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane,
transmembrane receptor, cell membrane, glycoprotein,
phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D*
3su8_X*
Length = 644
Score = 29.7 bits (66), Expect = 2.7
Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 158 VPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDLLN 217
+ YA P + +Y D+ T E+ + +EL + + +L
Sbjct: 545 LLYARDIPRYKRMVERYYADIRQTVPASDQEMNSVL--AELSWNYSGDLGARVALHELYK 602
Query: 218 YAHRPKRTVLEMLTDFPHATRA 239
Y ++ ++ L + A +
Sbjct: 603 YINKYYDQIITALEEDGTAQKM 624
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 28.6 bits (64), Expect = 3.7
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Query: 418 TAVREVLVETITLELQDEEEAKQYATVLIAGNANDMPTA-----VREVLVKVIT 466
T E LV+ + E + +LIA N +++ TA +++ L I
Sbjct: 100 TTTAEFLVD---ILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQ 150
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 28.5 bits (64), Expect = 3.8
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 418 TAVREVLVETITLELQDEEEAKQYATVLIAGNANDMPTA-----VREVLVKVIT 466
T E LV+ ++ E + +LIA N +++ TA +++ L I
Sbjct: 136 TTTAEFLVDILS---ITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQ 186
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain,
oxidoreductase; 2.00A {Homo sapiens}
Length = 186
Score = 28.6 bits (63), Expect = 4.0
Identities = 15/104 (14%), Positives = 40/104 (38%), Gaps = 6/104 (5%)
Query: 323 LIMVGPGTGIAPFRSYI-----HTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQ 377
+++VG G G+ PF S + + ++++ ++ CR+ A +F + ++
Sbjct: 20 VMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWF-ADLLQLLE 78
Query: 378 ANQLTFYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVR 421
+ +S ++ L + D+ T ++
Sbjct: 79 SQMQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLK 122
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI,
protein structure initiative, NESG; 2.56A
{Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Length = 85
Score = 26.8 bits (60), Expect = 4.0
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 446 IAGNANDMPTAVREVLV-KVITLELQ--DEEKAKQYVEQM 482
I + V + VIT + E ++ VE M
Sbjct: 23 IERALALLGYEVEDTDTTDVITFTMDEDSLEAVEREVEDM 62
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national
project on protei structural and functional analyses;
2.30A {Methanocaldococcus jannaschii}
Length = 83
Score = 26.4 bits (59), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 463 KVITLELQ--DEEKAKQYVEQM 482
K+I + ++ +EEK K+ VE+M
Sbjct: 41 KMIDIIMEGENEEKVKEEVEEM 62
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB
6.3.5.3), structural genomics, joint center for
structural JCSG; 1.90A {Thermotoga maritima} SCOP:
d.284.1.1 PDB: 3d54_B*
Length = 94
Score = 26.4 bits (59), Expect = 7.9
Identities = 8/22 (36%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 463 KVITLELQ--DEEKAKQYVEQM 482
K I LE++ ++EKA + V++
Sbjct: 55 KSIHLEVEAENKEKAYEIVKKA 76
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.404
Gapped
Lambda K H
0.267 0.0645 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,392,932
Number of extensions: 438075
Number of successful extensions: 1209
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1076
Number of HSP's successfully gapped: 74
Length of query: 494
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 397
Effective length of database: 3,993,456
Effective search space: 1585402032
Effective search space used: 1585402032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.7 bits)