RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12838
(494 letters)
>d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 279
Score = 166 bits (422), Expect = 1e-48
Identities = 54/244 (22%), Positives = 106/244 (43%), Gaps = 20/244 (8%)
Query: 79 VKEQREEMTVLCEPALADVRHIKLKLPAT-LQYSPGDVLLVHPHNRHSSVRKCLELLQDR 137
V R+ L + + H++L + + ++Y GD + V+P N + V + E+L
Sbjct: 47 VTANRK----LNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILG-- 100
Query: 138 DKPLTPSSRLRVVQKNQYMPVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSE 197
+ + ++ + P + T+Y D+ P+ LA +
Sbjct: 101 ---ADLDVIMSLNNLDEESNKKHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEP 157
Query: 198 LEQEKLTEFTSAEGQT--DLLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPR 255
EQE L + S+ G+ L++ +R +L +L D+P P+++L EL ++ R
Sbjct: 158 SEQEHLHKMASSSGEGKELYLSWVVEARRHILAILQDYPSLR--PPIDHLCELLPRLQAR 215
Query: 256 AFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDS------VAISIK 309
++IASS K H +H+ V+Y+ K G+ +++L A P V + ++
Sbjct: 216 YYAIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRALVPMFVR 275
Query: 310 RGSF 313
+ F
Sbjct: 276 KSQF 279
>d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase
FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 270
Score = 156 bits (394), Expect = 9e-45
Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 13/224 (5%)
Query: 96 DVRHIKLKLPAT--LQYSPGDVLLVHPHNRHSSVRKCLELLQDRDKPLTPSSRLRVVQKN 153
++L LQY PGD L V P N V +E L+D + ++N
Sbjct: 49 STIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEERN 108
Query: 154 QYMPVPYALRK-----PLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTS 208
+ V + P ++ Q +Y D+ P + A +E E+++L
Sbjct: 109 TALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVL-- 166
Query: 209 AEGQTDLLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSG 268
++G + + T++E+L +FP +P L S ++PR +SI+SSP +
Sbjct: 167 SKGLQEYEEWKWGKNPTMVEVLEEFPSIQ--MPATLLLTQLSLLQPRYYSISSSPDMYPD 224
Query: 269 ELHLLVAIVKYKTKMLA--PRYGLCSNYLAALNPGDSVAISIKR 310
E+HL VAIV Y T+ +G+CS++L + D V ++
Sbjct: 225 EVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRG 268
>d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein
{Escherichia coli [TaxId: 562]}
Length = 221
Score = 120 bits (303), Expect = 2e-32
Identities = 55/218 (25%), Positives = 86/218 (39%), Gaps = 34/218 (15%)
Query: 96 DVRHIKLKLPAT-LQYSPGDVLLVHPHNRHSSVRKCLELLQ-DRDKPLTPSSRLRVVQKN 153
DVRHI++ L + L+Y PGD L V N + V++ +ELL D+P+T
Sbjct: 30 DVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEG-------- 81
Query: 154 QYMPVPYALRKPLSVEQLATFYWDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQT 213
K L + + ++++L E A T SE L
Sbjct: 82 ----------KTLPLNEALQWHFELTVNT-ANIVENYATLTRSE---TLLPLVGDKAKLQ 127
Query: 214 DLLNYAHRPKRTVLEMLTDFPHATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLL 273
T + + F + E L L P+ PR +SIASS E+H+
Sbjct: 128 HYA------ATTPIVDMVRFSP--AQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVT 179
Query: 274 VAIVKYKTKMLAPRYGLCSNYLA-ALNPGDSVAISIKR 310
V +V+Y + R G S++LA + V + I+
Sbjct: 180 VGVVRYDVE-GRARAGGASSFLADRVEEEGEVRVFIEH 216
>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 160
Score = 112 bits (281), Expect = 7e-30
Identities = 45/195 (23%), Positives = 70/195 (35%), Gaps = 51/195 (26%)
Query: 315 FPKNEERPLIMVGPGTGIAPFRSYIHTR--ISNQTASAQRLHLFFGCRNQGADFYFNQEW 372
P P+IMVGPGTGIAPF +I R + Q L++GCR D+ + +E
Sbjct: 2 LPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREEL 61
Query: 373 QNAIQANQLTF-------------YVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTA 419
+ LT YVQH++ R L LI A + +AG+A +M
Sbjct: 62 ARFHKDGALTQLNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVAGDARNMAKD 121
Query: 420 VREVLVETITLELQDEEEAKQYATVLIAGNANDMPTAVREVLVKVITLELQDEEKAKQYV 479
V+ + + + +A YV
Sbjct: 122 VQNTFYDIVAEFGPM------------------------------------EHTQAVDYV 145
Query: 480 EQMEREGRLQTETWA 494
+++ +GR W+
Sbjct: 146 KKLMTKGRYSLNVWS 160
>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase
FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 165
Score = 108 bits (271), Expect = 2e-28
Identities = 42/186 (22%), Positives = 78/186 (41%), Gaps = 27/186 (14%)
Query: 312 SFVFPKNEERPLIMVGPGTGIAPFRSYIHTR---ISNQTASAQRLHLFFGCRNQGADFYF 368
SF P+N + P I+VGPGTGIAPFRS+ R I ++ + + L FGCR D +
Sbjct: 1 SFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIY 60
Query: 369 NQEWQNAIQANQLTFYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETI 428
+E A + SR + + +E L E++
Sbjct: 61 REETLQAKNKGV-FRELYTAYSREPDRPKKYVQDVL----------------QEQLAESV 103
Query: 429 TLELQDEEEAKQYATVLIAGNANDMPTAVREVLVKVITLELQ-DEEKAKQYVEQMEREGR 487
L+++ + + G+ M V + + +++T + + EE A ++ ++ + R
Sbjct: 104 YRALKEQG-----GHIYVCGDVT-MAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNR 157
Query: 488 LQTETW 493
+ +
Sbjct: 158 YHEDIF 163
>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein
{Escherichia coli [TaxId: 562]}
Length = 153
Score = 93.3 bits (231), Expect = 3e-23
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 28/179 (15%)
Query: 316 PKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNA 375
P N E P+IM+GPGTGIAPFR+++ R +++ + + LFFG + DF + EWQ
Sbjct: 2 PANPETPVIMIGPGTGIAPFRAFMQQRAADE--APGKNWLFFGNPHFTEDFLYQVEWQRY 59
Query: 376 IQANQLTFYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQDE 435
++ LT L +D + ++ + +
Sbjct: 60 VKEGVLTRI-------DLAWSRDQKEKVYVQDKLREQGAELWRWIND------------- 99
Query: 436 EEAKQYATVLIAGNANDMPTAVREVLVKVITLELQ-DEEKAKQYVEQMEREGRLQTETW 493
A + + G+AN M V + L++VI D E A +++ ++ E R Q + +
Sbjct: 100 -----GAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 153
>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin
reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 160
Score = 92.3 bits (228), Expect = 1e-22
Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 25/182 (13%)
Query: 314 VFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTAS--AQRLHLFFGCRNQGADFYFNQE 371
+ PK+ +IM+G GTGIAPFRS++ + L F + + +E
Sbjct: 2 LMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEE 61
Query: 372 WQNAIQANQLTFYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLE 431
++ + F + +SR G + T + + VE +
Sbjct: 62 FEKMKEKAPDNFRLDFAVSR-------------EQTNEKGEKMYIQTRMAQYAVELWEML 108
Query: 432 LQDEEEAKQYATVLIAGNANDMPTAVREVLVKVITLELQDEEKAKQYVEQMEREGRLQTE 491
+D V + G M + +++V + + +Y Q+++ + E
Sbjct: 109 KKD------NTYVYMCG-LKGMEKGIDDIMVSLA---AAEGIDWIEYKRQLKKAEQWNVE 158
Query: 492 TW 493
+
Sbjct: 159 VY 160
>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin
reductase) {Maize (Zea mays), root isoform [TaxId:
4577]}
Length = 154
Score = 84.5 bits (208), Expect = 5e-20
Identities = 26/178 (14%), Positives = 55/178 (30%), Gaps = 26/178 (14%)
Query: 318 NEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLH--LFFGCRNQGADFYFNQEWQNA 375
+ IM+ GTG+APFR Y+ + + F +++E+ +
Sbjct: 1 DPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSY 60
Query: 376 IQANQLTFYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQDE 435
++ F +SR + V + +
Sbjct: 61 LKQYPDNFRYDKALSRE--------------------QKNRSGGKMYVQDKIEEYSDEIF 100
Query: 436 EEAKQYATVLIAGNANDMPTAVREVLVKVITLELQDEEKAKQYVEQMEREGRLQTETW 493
+ A + G M +++ L KV + E Q + Q+++ + E +
Sbjct: 101 KLLDGGAHIYFCGLKG-MMPGIQDTLKKVAE---RRGESWDQKLAQLKKNKQWHVEVY 154
>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin
reductase) {Cyanobacterium (Anabaena sp.), pcc 7119
[TaxId: 1167]}
Length = 162
Score = 83.9 bits (206), Expect = 9e-20
Identities = 33/185 (17%), Positives = 57/185 (30%), Gaps = 31/185 (16%)
Query: 316 PKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQ-------RLHLFFGCRNQGADFYF 368
P + E +IM+ GTGI P R+Y+ + +A L FG + +
Sbjct: 2 PDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTT-PNILY 60
Query: 369 NQEWQNAIQANQLTFYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETI 428
+E + Q F + + +SR Q Q V
Sbjct: 61 KEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEH------------------ 102
Query: 429 TLELQDEEEAKQYATVLIAGNANDMPTAVREVLVKVITLELQDEEKAKQYVEQMEREGRL 488
+ + Q I G M + L ++ Y + +++ GR
Sbjct: 103 -ADQLWQLIKNQKTHTYICGPP-PMEEGIDAALSAAA---AKEGVTWSDYQKDLKKAGRW 157
Query: 489 QTETW 493
ET+
Sbjct: 158 HVETY 162
>d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin
reductase) N-terminal domain {Maize (Zea mays), root
isoform [TaxId: 4577]}
Length = 157
Score = 66.6 bits (162), Expect = 9e-14
Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 23/152 (15%)
Query: 180 ATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDLLNYAHRPKRTVLEMLTDFP----- 234
P ++ FT + + E L A G+T V++ + P
Sbjct: 16 KEPPLNTYKPKEPFTATIVSVESLVG-PKAPGET---------CHIVIDHGGNVPYWEGQ 65
Query: 235 HATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAP-------R 287
P E + +P R +SIAS+ + + V+ +
Sbjct: 66 SYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSK 125
Query: 288 YGLCSNYLAALNPGDSVAISIKRG-SFVFPKN 318
G+CSN+L PGD + ++ G + P+
Sbjct: 126 NGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEE 157
Score = 27.6 bits (61), Expect = 2.5
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 88 VLCEPALADVRHIKLKLPATLQYSPGDVLLVHPHN 122
++ A + HI + + Y G V P
Sbjct: 39 LVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPG 73
>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 143
Score = 60.7 bits (146), Expect = 9e-12
Identities = 13/123 (10%), Positives = 32/123 (26%), Gaps = 18/123 (14%)
Query: 319 EERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA 378
++ P+ ++ G G P + + T +++ F N + ++ +
Sbjct: 5 DDTPVTLISAGVGQTPMLAMLDTLAKAG--HTAQVNWFHAAENGDVHAFADEVKELGQSL 62
Query: 379 NQLTF---------------YVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREV 423
+ T L L+ + G +
Sbjct: 63 PRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFSDPTMQFYLCG-PVGFMQFTAKQ 121
Query: 424 LVE 426
LV+
Sbjct: 122 LVD 124
>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin
reductase) N-terminal domain {Spinach (Spinacia
oleracea) [TaxId: 3562]}
Length = 136
Score = 58.2 bits (140), Expect = 5e-11
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 251 PIRPRAFSIASSPKTHSGE---LHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAIS 307
P + R +SIASS G+ + L V + Y G+CSN+L L PG V ++
Sbjct: 71 PHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLT 130
Score = 28.1 bits (62), Expect = 1.4
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 91 EPALADVRHIKLKLPATLQYSPGDVLLVHPHNRHSSVR 128
+ A + H+ + Y G + V P + +
Sbjct: 33 DDAPGETWHMVFSHEGEIPYREGQSVGVIPDGEDKNGK 70
>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain
{Alcaligenes eutrophus [TaxId: 106590]}
Length = 142
Score = 57.6 bits (138), Expect = 9e-11
Identities = 16/124 (12%), Positives = 37/124 (29%), Gaps = 19/124 (15%)
Query: 318 NEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQ 377
+ + P++++ G G+ P S + + +++ G RN ++ + A
Sbjct: 3 DAKTPIVLISGGVGLTPMVSMLKVALQAPP---RQVVFVHGARNSAVHAMRDRLREAAKT 59
Query: 378 ANQLTFY---------------VQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVRE 422
L + + + ++ I A I G M +
Sbjct: 60 YENLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSILLPDADYYICGPIPFMR-MQHD 118
Query: 423 VLVE 426
L
Sbjct: 119 ALKN 122
>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays)
[TaxId: 4577]}
Length = 146
Score = 57.7 bits (138), Expect = 1e-10
Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 18/134 (13%)
Query: 311 GSFVFPKNEE--RPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYF 368
GSFV + R L M+ G+GI P I + +Q +HL + R +
Sbjct: 1 GSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDILLR 60
Query: 369 NQEWQNAIQ-ANQLTFYVQHVMSRHLPLLQDLICSH---------------QATVLIAGN 412
++ + A + ++L + + L G
Sbjct: 61 DELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGP 120
Query: 413 ANDMPTAVREVLVE 426
+ A+ L +
Sbjct: 121 PPMIQFAISPNLEK 134
>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin
reductase) N-terminal domain {Cyanobacterium (Anabaena
sp.), pcc 7119 [TaxId: 1167]}
Length = 133
Score = 53.6 bits (128), Expect = 2e-09
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 249 FSPIRPRAFSIASSPKTHSGELHLLVAIVKY----KTKMLAPRYGLCSNYLAALNPGDSV 304
P + R +SIAS+ + + V+ + YG+CS YL + PG V
Sbjct: 63 GKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 122
Query: 305 AISIKRGSFV 314
I+ G +
Sbjct: 123 KITGPVGKEM 132
>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase
{Escherichia coli [TaxId: 562]}
Length = 135
Score = 53.4 bits (127), Expect = 2e-09
Identities = 22/119 (18%), Positives = 47/119 (39%), Gaps = 13/119 (10%)
Query: 318 NEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQ 377
+EERP+I++ GTG + RS + T ++ + + +++G R + + + +++
Sbjct: 3 DEERPMILIAGGTGFSYARSILLTALARN--PNRDITIYWGGREEQHLYDLCELEALSLK 60
Query: 378 ANQLTFYVQHVMS----------RHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVE 426
L +LQD + + IAG +M R++
Sbjct: 61 HPGLQVVPVVEQPEAGWRGRTGTVLTAVLQDHGTLAEHDIYIAGRF-EMAKIARDLFCS 118
>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin
reductase) {Azotobacter vinelandii [TaxId: 354]}
Length = 158
Score = 52.7 bits (125), Expect = 8e-09
Identities = 25/145 (17%), Positives = 40/145 (27%), Gaps = 27/145 (18%)
Query: 321 RPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQ 380
+ L M+ GTG+APF S I + +++ L G R Y ++ Q+
Sbjct: 8 KHLYMLSTGTGLAPFMSLIQDPEVYE--RFEKVVLIHGVRQVNELAYQQFITEHLPQSEY 65
Query: 381 ------LTFYVQHVMSRHLP------------------LLQDLICSHQATVLIAGNANDM 416
++R + I +I G + M
Sbjct: 66 FGEAVKEKLIYYPTVTRESFHNQGRLTDLMRSGKLFEDIGLPPINPQDDRAMICG-SPSM 124
Query: 417 PTAVREVLVETITLELQDEEEAKQY 441
EVL E Y
Sbjct: 125 LDESCEVLDGFGLKISPRMGEPGDY 149
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase
{Acinetobacter sp. [TaxId: 472]}
Length = 133
Score = 50.7 bits (120), Expect = 2e-08
Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 16/121 (13%)
Query: 317 KNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAI 376
++ +RP++M+ GTGIAPF S + S + L FG E +A+
Sbjct: 2 RDVKRPVLMLAGGTGIAPFLSMLQVLEQKG--SEHPVRLVFGVTQDCDLVA--LEQLDAL 57
Query: 377 QANQLTFYVQHVMSRHLP-----------LLQDLICSHQATVLIAGNANDMPTAVREVLV 425
Q F + V++ + D + + V + G M AVR L
Sbjct: 58 QQKLPWFEYRTVVAHAESQHERKGYVTGHIEYDWLNGGEVDVYLCGPV-PMVEAVRSWLD 116
Query: 426 E 426
Sbjct: 117 T 117
>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C,
MmoC {Methylococcus capsulatus [TaxId: 414]}
Length = 141
Score = 50.4 bits (119), Expect = 3e-08
Identities = 18/126 (14%), Positives = 33/126 (26%), Gaps = 16/126 (12%)
Query: 313 FVFPKNEERPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEW 372
F + P V GTG+AP S + + F +
Sbjct: 1 FGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWTAPN----ETRIYFGVNTEPELFYIDE 56
Query: 373 QNAIQANQLTFYVQHVMSRHLP------------LLQDLICSHQATVLIAGNANDMPTAV 420
+++ + V+ + L +DL S + M A
Sbjct: 57 LKSLERSMRNLTVKACVWHPSGDWEGEQGSPIDALREDLESSDANPDIYLCGPPGMIDAA 116
Query: 421 REVLVE 426
E++
Sbjct: 117 CELVRS 122
>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 147
Score = 48.4 bits (114), Expect = 2e-07
Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 24/138 (17%)
Query: 311 GSFVFPKNEE--------RPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQ 362
G F +++ + + M+ GTGI P I + + HL F + +
Sbjct: 1 GKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDP-DDHTVCHLLFANQTE 59
Query: 363 GADFYFNQEWQNAIQANQLTFYVQHVMSR------------HLPLLQDLI--CSHQATVL 408
D E + + F + + + R + +++D + + VL
Sbjct: 60 K-DILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVL 118
Query: 409 IAGNANDMPTAVREVLVE 426
+ G + A L
Sbjct: 119 MCGPPPMIQYACLPNLDH 136
>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin
reductase) {Escherichia coli [TaxId: 562]}
Length = 148
Score = 47.7 bits (112), Expect = 3e-07
Identities = 19/125 (15%), Positives = 34/125 (27%), Gaps = 23/125 (18%)
Query: 321 RPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQ 380
L M+ GT I P+ S + L L R AD + Q + +
Sbjct: 7 ETLWMLATGTAIGPYLSILRLGKDLDRFK--NLVLVHAARYA-ADLSYLPLMQELEKRYE 63
Query: 381 LTFYV-------------------QHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVR 421
+ + + + V++ GN M +
Sbjct: 64 GKLRIQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNP-QMVRDTQ 122
Query: 422 EVLVE 426
++L E
Sbjct: 123 QLLKE 127
>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase
{Pseudomonas cepacia, db01 [TaxId: 292]}
Length = 120
Score = 43.0 bits (100), Expect = 8e-06
Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 8/113 (7%)
Query: 315 FPKNEE-RPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQ 373
FP ++ + I+V G GI P S + + L++ R+ F E
Sbjct: 2 FPLDKRAKSFILVAGGIGITPMLSMARQLRAEGL---RSFRLYYLTRDPE-GTAFFDELT 57
Query: 374 NAIQANQLTFYVQHVMSRHLPLLQDLICSHQ--ATVLIAGNANDMPTAVREVL 424
+ + + + H + + V G + VR++
Sbjct: 58 SDEWRSDVKIHHDHGDPTKAFDFWSVFEKSKPAQHVYCCGPQ-ALMDTVRDMT 109
>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK
subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}
Length = 160
Score = 39.4 bits (91), Expect = 2e-04
Identities = 15/122 (12%), Positives = 32/122 (26%), Gaps = 10/122 (8%)
Query: 321 RPLIMVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQ 380
++++G G G+ P ++ + G ++ E+ N
Sbjct: 9 DKILIIGGGIGVPPLYELAKQLEKTG----CQMTILLGFASE-NVKILENEFSNLKNVTL 63
Query: 381 LTFYV---QHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVREVLVETITLELQDEEE 437
L+ ++ A A M AV + + L + E
Sbjct: 64 KIATDDGSYGTKGHVGMLMNEIDFEVDALYTCG--APAMLKAVAKKYDQLERLYISMESR 121
Query: 438 AK 439
Sbjct: 122 MA 123
>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn
(Zea mays) [TaxId: 4577]}
Length = 114
Score = 38.6 bits (89), Expect = 3e-04
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 253 RPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGS 312
RA++ S G LLV + P GL + YL +L G + + G
Sbjct: 50 CMRAYTPTSMV-DEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGH 108
Query: 313 FVF 315
+
Sbjct: 109 VEY 111
>d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain
{Alcaligenes eutrophus [TaxId: 106590]}
Length = 111
Score = 36.3 bits (83), Expect = 0.001
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 251 PIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYL-AALNPGDSVAISIK 309
+ R +S++ P + + + G SN L +N GD V ++
Sbjct: 52 LQQIRQYSLSDMPNGRTYRISVKREGGG------PQPPGYVSNLLHDHVNVGDQVKLAAP 105
Query: 310 RGSFV 314
GSF
Sbjct: 106 YGSFH 110
>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 124
Score = 32.5 bits (73), Expect = 0.038
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 262 SPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPGDSVAISIKRGSFVF 315
S G + L++ + T P G S YL ++ GD++ G V+
Sbjct: 68 SSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVY 121
>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 103
Score = 31.9 bits (72), Expect = 0.041
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 293 NYLAALNPGDSVAISIKRGSF-----VFPKNEERPLIMVGPGT 330
L ++ G+ + I+ +G+F P N R + +
Sbjct: 42 AALKTISVGEVINITTDQGTFHLKTGRNPNNSSRAYMGIRTSN 84
>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin
reductase) N-terminal domain {Azotobacter vinelandii
[TaxId: 354]}
Length = 99
Score = 31.5 bits (71), Expect = 0.052
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 12/74 (16%)
Query: 242 VEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLCSNYLAALNPG 301
V E+ RA+SIAS E HL +K + G ++ L L G
Sbjct: 37 VMIGLEVDGRPLMRAYSIASPN----YEEHLEFFSIKVQN-------GPLTSRLQHLKEG 85
Query: 302 DSVAISIK-RGSFV 314
D + +S K G+ V
Sbjct: 86 DELMVSRKPTGTLV 99
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 29.2 bits (64), Expect = 0.84
Identities = 19/136 (13%), Positives = 40/136 (29%), Gaps = 8/136 (5%)
Query: 363 GADFYFNQEWQNAIQANQLTFYVQHVMSRHLPLLQDLICSHQATVLIAGNANDMPTAVRE 422
+ N + L H R L + + ++ ++ V++
Sbjct: 33 TDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV--DSAAFQREVKD 90
Query: 423 VLVETITLELQDEEEAKQYATVLIAGNANDMPTA-----VREVLVKVITLELQDEEKAKQ 477
V + L D K ++LIA N D+ A +++ L K + A
Sbjct: 91 VAEFLYQV-LIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPS 149
Query: 478 YVEQMEREGRLQTETW 493
++ +
Sbjct: 150 TLDSSSTAPAQLGKKG 165
>d1gtda_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 82
Score = 26.9 bits (60), Expect = 1.7
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 446 IAGNANDMPTAVREVLV-KVITLELQ--DEEKAKQYVEQM 482
I + V + VIT + E ++ VE M
Sbjct: 22 IERALALLGYEVEDTDTTDVITFTMDEDSLEAVEREVEDM 61
>d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase
{Staphylococcus aureus [TaxId: 1280]}
Length = 236
Score = 28.0 bits (62), Expect = 2.2
Identities = 15/116 (12%), Positives = 36/116 (31%)
Query: 176 WDLNATPKRYAFEVLAHFTPSELEQEKLTEFTSAEGQTDLLNYAHRPKRTVLEMLTDFPH 235
LA+ ++ + E ++ + + + V+ +F
Sbjct: 76 GQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFES 135
Query: 236 ATRAVPVEYLFELFSPIRPRAFSIASSPKTHSGELHLLVAIVKYKTKMLAPRYGLC 291
++++F P +A P + L+LL A+ + M G+
Sbjct: 136 TPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGIS 191
>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus
thermophilus [TaxId: 274]}
Length = 248
Score = 27.5 bits (61), Expect = 3.5
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 438 AKQYATVLIAGNANDMPTAVREVLVKVITLELQDEEKAKQYVEQ-MEREGRL 488
A++ A V + + + ++L+DE + ++VE+ GR+
Sbjct: 26 AREGALVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRV 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.404
Gapped
Lambda K H
0.267 0.0459 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,791,076
Number of extensions: 82582
Number of successful extensions: 336
Number of sequences better than 10.0: 1
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 35
Length of query: 494
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 405
Effective length of database: 1,185,626
Effective search space: 480178530
Effective search space used: 480178530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.6 bits)