Query psy12840
Match_columns 469
No_of_seqs 261 out of 730
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 21:09:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4698|consensus 100.0 3.1E-37 6.7E-42 320.1 16.2 272 170-452 168-469 (475)
2 PF04577 DUF563: Protein of un 100.0 1.3E-30 2.7E-35 246.0 23.5 202 183-410 1-205 (206)
3 COG4421 Capsular polysaccharid 99.8 8.3E-18 1.8E-22 167.8 18.9 234 167-448 116-355 (368)
4 cd05212 NAD_bind_m-THF_DH_Cycl 91.1 1.3 2.8E-05 40.3 8.6 84 289-387 17-101 (140)
5 PRK14178 bifunctional 5,10-met 88.8 1.6 3.4E-05 44.4 7.9 83 289-387 141-225 (279)
6 PF02882 THF_DHG_CYH_C: Tetrah 88.8 1.6 3.5E-05 40.7 7.3 82 290-386 26-108 (160)
7 PRK14188 bifunctional 5,10-met 77.4 11 0.00023 38.7 8.4 82 290-386 148-230 (296)
8 PRK14189 bifunctional 5,10-met 77.2 8.5 0.00018 39.3 7.5 82 289-386 147-230 (285)
9 PRK14190 bifunctional 5,10-met 77.1 9.2 0.0002 39.0 7.7 82 289-386 147-230 (284)
10 PRK14177 bifunctional 5,10-met 76.3 12 0.00026 38.2 8.2 81 290-386 149-231 (284)
11 PRK14194 bifunctional 5,10-met 76.1 11 0.00024 38.7 8.1 81 290-386 149-231 (301)
12 PRK14179 bifunctional 5,10-met 74.3 14 0.0003 37.8 8.1 81 290-386 148-230 (284)
13 PRK14191 bifunctional 5,10-met 74.2 9.7 0.00021 38.9 7.0 82 289-386 146-229 (285)
14 PLN02897 tetrahydrofolate dehy 74.2 12 0.00026 39.3 7.7 81 290-386 204-286 (345)
15 PRK14174 bifunctional 5,10-met 71.7 11 0.00024 38.6 6.8 86 289-386 148-235 (295)
16 PRK14182 bifunctional 5,10-met 71.4 15 0.00033 37.5 7.6 81 290-386 147-229 (282)
17 PRK14183 bifunctional 5,10-met 70.6 16 0.00036 37.2 7.7 82 289-386 146-229 (281)
18 COG0190 FolD 5,10-methylene-te 70.6 14 0.0003 37.7 7.1 82 289-386 145-228 (283)
19 PRK14170 bifunctional 5,10-met 70.5 13 0.00028 38.0 6.9 81 290-386 147-229 (284)
20 PRK14180 bifunctional 5,10-met 70.2 13 0.00028 37.9 6.8 81 290-386 148-230 (282)
21 PRK14169 bifunctional 5,10-met 69.1 18 0.00038 36.9 7.5 81 290-386 146-228 (282)
22 PRK14166 bifunctional 5,10-met 69.0 17 0.00038 37.0 7.5 81 290-386 147-229 (282)
23 PRK14175 bifunctional 5,10-met 68.9 21 0.00045 36.5 8.0 83 290-387 148-231 (286)
24 PRK14172 bifunctional 5,10-met 68.6 18 0.0004 36.8 7.5 82 289-386 147-230 (278)
25 PRK14171 bifunctional 5,10-met 68.4 18 0.00039 37.0 7.5 81 290-386 149-231 (288)
26 PRK14186 bifunctional 5,10-met 68.1 18 0.00039 37.2 7.4 82 289-386 147-230 (297)
27 PRK14173 bifunctional 5,10-met 68.1 18 0.0004 36.9 7.5 81 290-386 145-227 (287)
28 PLN02616 tetrahydrofolate dehy 67.6 18 0.0004 38.1 7.4 82 289-386 220-303 (364)
29 PRK14176 bifunctional 5,10-met 67.1 22 0.00048 36.4 7.8 82 290-387 154-237 (287)
30 PLN02516 methylenetetrahydrofo 65.7 23 0.00049 36.5 7.6 81 290-386 157-239 (299)
31 PRK14187 bifunctional 5,10-met 64.8 23 0.00049 36.4 7.4 82 289-386 149-232 (294)
32 PRK14184 bifunctional 5,10-met 64.7 27 0.00059 35.7 7.9 82 289-386 146-233 (286)
33 cd01079 NAD_bind_m-THF_DH NAD 64.2 20 0.00043 34.7 6.5 91 290-387 43-157 (197)
34 PRK14193 bifunctional 5,10-met 63.5 24 0.00053 36.0 7.3 82 290-386 148-232 (284)
35 cd00316 Oxidoreductase_nitroge 63.5 51 0.0011 34.2 10.0 95 304-403 151-251 (399)
36 PRK10792 bifunctional 5,10-met 61.5 20 0.00043 36.7 6.2 81 290-386 149-231 (285)
37 cd01971 Nitrogenase_VnfN_like 56.0 27 0.00058 37.3 6.5 97 305-404 155-261 (427)
38 cd01080 NAD_bind_m-THF_DH_Cycl 55.9 21 0.00047 33.4 5.1 75 304-388 43-118 (168)
39 PRK14181 bifunctional 5,10-met 54.8 38 0.00082 34.7 7.0 82 290-386 143-229 (287)
40 PRK14168 bifunctional 5,10-met 53.9 50 0.0011 33.9 7.7 82 290-386 151-237 (297)
41 PF05222 AlaDh_PNT_N: Alanine 53.4 46 0.00099 30.0 6.6 89 318-409 11-115 (136)
42 PRK14167 bifunctional 5,10-met 53.2 47 0.001 34.1 7.4 83 289-386 146-233 (297)
43 cd01967 Nitrogenase_MoFe_alpha 51.1 1.7E+02 0.0037 30.6 11.5 94 304-403 159-258 (406)
44 TIGR02853 spore_dpaA dipicolin 47.6 88 0.0019 31.7 8.4 59 349-408 200-261 (287)
45 PRK14185 bifunctional 5,10-met 47.6 78 0.0017 32.5 7.9 83 289-386 146-233 (293)
46 PF01520 Amidase_3: N-acetylmu 46.2 28 0.0006 31.8 4.1 44 326-370 33-79 (175)
47 PRK14192 bifunctional 5,10-met 46.1 61 0.0013 33.0 6.9 86 284-386 144-231 (283)
48 cd02696 MurNAc-LAA N-acetylmur 45.5 52 0.0011 30.0 5.9 46 326-372 34-82 (172)
49 PRK08306 dipicolinate synthase 44.9 82 0.0018 32.0 7.7 59 351-410 203-264 (296)
50 cd01980 Chlide_reductase_Y Chl 42.7 1.6E+02 0.0034 31.5 9.7 90 305-403 159-253 (416)
51 PRK08306 dipicolinate synthase 42.6 1.2E+02 0.0025 30.9 8.4 82 324-409 15-121 (296)
52 PRK10319 N-acetylmuramoyl-l-al 42.0 50 0.0011 33.7 5.5 55 326-386 91-148 (287)
53 cd03789 GT1_LPS_heptosyltransf 40.3 54 0.0012 32.3 5.4 44 345-390 185-228 (279)
54 PRK05568 flavodoxin; Provision 37.7 64 0.0014 28.3 5.0 51 305-363 3-53 (142)
55 cd01977 Nitrogenase_VFe_alpha 37.5 3.8E+02 0.0081 28.5 11.6 93 306-404 163-261 (415)
56 PRK12548 shikimate 5-dehydroge 37.0 2E+02 0.0043 29.1 9.0 94 307-405 152-255 (289)
57 PRK02910 light-independent pro 36.7 2.2E+02 0.0047 31.4 9.9 98 304-404 157-261 (519)
58 PF00389 2-Hacid_dh: D-isomer 36.5 82 0.0018 27.5 5.5 80 324-408 9-89 (133)
59 PF13528 Glyco_trans_1_3: Glyc 33.5 1.7E+02 0.0037 29.0 7.8 61 325-385 206-278 (318)
60 cd01078 NAD_bind_H4MPT_DH NADP 33.3 1.6E+02 0.0034 27.5 7.2 72 307-386 54-129 (194)
61 PRK10431 N-acetylmuramoyl-l-al 33.1 86 0.0019 34.1 5.9 69 304-372 189-275 (445)
62 PF01075 Glyco_transf_9: Glyco 32.6 1.1E+02 0.0023 29.4 6.0 80 306-394 138-217 (247)
63 PRK12749 quinate/shikimate deh 30.9 2.4E+02 0.0052 28.6 8.4 94 307-405 150-252 (288)
64 TIGR02883 spore_cwlD N-acetylm 29.1 1.4E+02 0.0031 28.1 6.0 25 347-371 70-96 (189)
65 PF00148 Oxidored_nitro: Nitro 28.3 2.2E+02 0.0047 29.7 7.9 94 304-402 143-243 (398)
66 cd01972 Nitrogenase_VnfE_like 27.5 1.7E+02 0.0038 31.1 7.1 96 305-403 161-265 (426)
67 cd01981 Pchlide_reductase_B Pc 27.4 4.7E+02 0.01 27.8 10.4 97 305-404 162-265 (430)
68 cd01968 Nitrogenase_NifE_I Nit 25.9 4.6E+02 0.01 27.7 9.9 94 305-404 158-257 (410)
69 MTH00158 ATP8 ATP synthase F0 25.7 43 0.00094 22.8 1.4 13 8-20 2-14 (32)
70 TIGR01862 N2-ase-Ialpha nitrog 25.7 6.4E+02 0.014 27.1 11.0 93 305-403 191-289 (443)
71 PF06858 NOG1: Nucleolar GTP-b 25.2 1.2E+02 0.0025 23.8 3.8 34 325-358 5-40 (58)
72 TIGR02201 heptsyl_trn_III lipo 25.1 1.3E+02 0.0028 30.6 5.4 65 323-390 226-290 (344)
73 TIGR01753 flav_short flavodoxi 23.8 1.3E+02 0.0027 26.0 4.4 49 307-363 2-50 (140)
74 PRK05569 flavodoxin; Provision 23.6 1.5E+02 0.0032 26.0 4.8 51 305-363 3-53 (141)
75 cd06406 PB1_P67 A PB1 domain i 23.1 2.6E+02 0.0056 23.3 5.7 51 283-338 23-73 (80)
76 TIGR01755 flav_wrbA NAD(P)H:qu 23.0 1.3E+02 0.0029 28.5 4.7 38 305-344 2-39 (197)
77 PRK00258 aroE shikimate 5-dehy 22.7 2.2E+02 0.0048 28.4 6.4 53 354-406 181-241 (278)
78 PF03358 FMN_red: NADPH-depend 22.2 1.6E+02 0.0034 26.0 4.8 53 307-363 2-75 (152)
79 PF02173 pKID: pKID domain; I 21.9 5 0.00011 29.1 -3.9 15 310-324 15-29 (41)
80 PRK11921 metallo-beta-lactamas 21.9 1.6E+02 0.0035 31.0 5.4 71 282-363 234-305 (394)
81 COG3959 Transketolase, N-termi 21.4 1.5E+02 0.0032 29.6 4.6 49 307-359 173-226 (243)
82 PRK03767 NAD(P)H:quinone oxido 21.1 1.7E+02 0.0038 27.6 5.1 56 305-363 3-74 (200)
83 TIGR02195 heptsyl_trn_II lipop 20.8 2.1E+02 0.0046 28.8 6.0 48 342-391 235-282 (334)
84 COG1920 Predicted nucleotidylt 20.6 1.1E+02 0.0024 29.8 3.5 79 326-409 76-163 (210)
85 TIGR01860 VNFD nitrogenase van 20.5 9.5E+02 0.021 26.0 11.2 93 306-404 202-300 (461)
86 TIGR01284 alt_nitrog_alph nitr 20.3 1E+03 0.022 25.7 11.3 93 306-404 200-298 (457)
87 PRK09479 glpX fructose 1,6-bis 20.3 3.2E+02 0.0069 28.5 6.9 55 303-368 156-213 (319)
88 cd03814 GT1_like_2 This family 20.2 3.2E+02 0.0068 26.5 6.9 61 304-367 196-275 (364)
89 PRK07308 flavodoxin; Validated 20.2 1.7E+02 0.0036 26.0 4.5 40 305-348 3-42 (146)
No 1
>KOG4698|consensus
Probab=100.00 E-value=3.1e-37 Score=320.14 Aligned_cols=272 Identities=31% Similarity=0.434 Sum_probs=226.4
Q ss_pred ccceEEeccccCCCCchhhHhh-HHHHHHHHHhhcCCCCCCCCceEEEEEcC-cchhhHHHHHHHhhcCCCceeccCCCC
Q psy12840 170 YKMDVLKHGQIGAVNMYHHFCD-FFNLYASQHVNASHPDVFSTDVHIMIWES-YTYASAFADTFRAFTRHPVWDLKTFTG 247 (469)
Q Consensus 170 ~~~~vf~~g~~g~~N~yH~f~D-~lPly~tl~~~~s~P~~f~~dv~Ivi~d~-~~~~~~f~el~~~fs~~pii~l~~~~~ 247 (469)
.|+.||+.||+ ++|+||+|+| ++|||++.+- - .|++++++++++. .||..+|.|+++.||++|++...+ ++
T Consensus 168 ~pa~vfs~Gg~-tgn~yhdf~d~~ipL~it~~~-~----~~n~ev~~li~~~~~ww~~kf~Dvv~~lSn~~~v~~~~-~~ 240 (475)
T KOG4698|consen 168 VPAIVFSTGGY-TGNEYHDFNDGIIPLFITEAE-L----RFNKEVQFLITETHSWWDMKFGDVVRQLSNYPVVDFDA-EL 240 (475)
T ss_pred cchheeecCCc-chhhHHHHHhhhhhhhcccch-h----cccccEEEEEEEcchhhhhhHHHHHHhcCCCceEEecC-Cc
Confidence 47778999999 9999999999 7999999762 1 2889999999999 567779999999999999888876 78
Q ss_pred ceeeeceEEEcCCccccccccccCccccCCCcchHHHHHHHHHHHh----cCCCccccCCCceEEEEEEeCCCCCcccCH
Q psy12840 248 LTVCFKNLVLPLLPRMIYGLYYNTPLIWGCEKSGLMEAFSKHILHR----LKVRRLRRKNSKVRITLLSRDTQYRNILNE 323 (469)
Q Consensus 248 ~~vCF~~aIv~l~pr~~~gl~y~~pl~~gc~~s~l~~~Fr~~il~~----l~i~~~~p~~~~~rvv~isR~~~~R~I~Ne 323 (469)
+.+||+++++|+..++.....++.|...+|.+...+++|.+..++. .+++... ..++||+++++|.++ |.|+||
T Consensus 241 ~ThcF~~~~vgL~~h~~y~v~~t~~~~~~~~s~~~fr~~l~~a~~~~i~~~~~t~~~-~~kkpri~~lsR~~~-r~Ilne 318 (475)
T KOG4698|consen 241 RTHCFKEAIVGLVSHFPYAVNPTQPPPNGTLSMLDFRNLLDKALSPRIPEANVTAPE-PWKKPRITILSRAGS-RAILNE 318 (475)
T ss_pred eEEEeeeeeeeeeecccccccCCcCCCccccccccHHHHHHHHhcccccccccCCcC-hhhCCceEEEecccc-hhhhcc
Confidence 9999999999998766666667777778888888999999998876 4555443 346799999999998 999999
Q ss_pred HHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechhHHhhhhcCCCCcEEEEEecCCCchhHHHHHHHCCC
Q psy12840 324 QELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGAGLTHLMFLPDWAVVFELYNCEDEHCYKDLARLRGI 403 (469)
Q Consensus 324 ~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGAgLtn~lFmppga~ViEl~P~~~~~~y~~lA~~~Gl 403 (469)
+||.+.+++. ||+|.+++++ ..++.+|+.+.+++||+||+|||||||++|+||++++|+|+|+|+..|+..+|.+.+.
T Consensus 319 ~el~~~~~~~-gf~v~~~~~~-~t~v~~~~~i~~s~~vmiGvHGa~lth~lfl~~~~~~iqi~pcg~~~w~a~~a~~~p~ 396 (475)
T KOG4698|consen 319 DELPRMLEDI-GFEVSVLRPD-RTEVAKQLRITNSSDVMIGVHGAGLTHLLFLPPWAGVIQIYPCGDPGWAAKLARLRPA 396 (475)
T ss_pred hhhhHHHHhC-CCceEEeccc-ccchhhhhheeeccceeeeccCccceeEEecCCcceEEEEEECCCccchhhhhhcccc
Confidence 9999999999 9999999885 6999999999999999999999999999999999999999999988888888888887
Q ss_pred eEEEEec--------CCCCCCCCCCCCCCCCC----------------CCCccceeecHHHHHHHHHHHHHHH
Q psy12840 404 KYITWED--------KSKLEPQDEGHHPNGGA----------------HAKFTNYKFDVAEFVRLVRRGVKHV 452 (469)
Q Consensus 404 ~Y~~~~~--------~~~l~p~d~~~hp~~g~----------------~~k~~n~~vD~~ef~~~L~~Al~~v 452 (469)
+|..|+- ++.+.-++.++++...+ ....|++++|+.+|+..+.+|....
T Consensus 397 k~~~l~y~~ykI~~~es~l~~~y~~d~~~v~dp~s~~~~~f~~~k~~~yl~~q~v~ld~nRf~~~~~~a~~~~ 469 (475)
T KOG4698|consen 397 KYMTLEYAEYKIRAEESELYHKYGGDNTIVFDPISFQKKGFEETKKKVYLELQAVRLDINRFRKTLVKAYLKE 469 (475)
T ss_pred ceeccccceeEEeecccceeeeccCCCceecccceeccccceeeeeeeeEeEeeeehhhhhcccchhHHHHHH
Confidence 7777762 12233333333332211 1126899999999999998887654
No 2
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=99.97 E-value=1.3e-30 Score=245.99 Aligned_cols=202 Identities=24% Similarity=0.385 Sum_probs=155.3
Q ss_pred CCchhhHhhHHHHHHHHHhhcCCCCCCCCceEEEEEcCcchhhHHHHHHHhhcC-CCceeccCCCCceeeeceEEEcCCc
Q psy12840 183 VNMYHHFCDFFNLYASQHVNASHPDVFSTDVHIMIWESYTYASAFADTFRAFTR-HPVWDLKTFTGLTVCFKNLVLPLLP 261 (469)
Q Consensus 183 ~N~yH~f~D~lPly~tl~~~~s~P~~f~~dv~Ivi~d~~~~~~~f~el~~~fs~-~pii~l~~~~~~~vCF~~aIv~l~p 261 (469)
.|+||++.|++|.++++..... ..+..+++.+...-...+.++|++|+. ...+.+. .++.+||++++++..+
T Consensus 1 ~~~gH~l~d~l~~l~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~l~~lg~~~~~i~~~--~~~~~~~~~l~~~~~~ 73 (206)
T PF04577_consen 1 NNFGHFLIDFLPRLWYLPQYIP-----DSDIIILVPDDFDNPPFIREILELLGIPENRIKID--SDEPVCFERLIVPSPP 73 (206)
T ss_pred CCCcEEHHHHHHHHHHHHHHCC-----CCCeEEEEcCCccccHHHHHHHHHcCCCccEEEEc--CCCeEEECEEEEeCCC
Confidence 4788999999998888876543 234455555521112234488988875 2223222 3588999999998754
Q ss_pred cccccccccCccccCCCcchHHHHHHHHHHHhcCCCccccCCCceEEEEEEeC-CCCCcccCHHHHHHHHhcCCCcEEEE
Q psy12840 262 RMIYGLYYNTPLIWGCEKSGLMEAFSKHILHRLKVRRLRRKNSKVRITLLSRD-TQYRNILNEQELIEALSQEPSVKVKR 340 (469)
Q Consensus 262 r~~~gl~y~~pl~~gc~~s~l~~~Fr~~il~~l~i~~~~p~~~~~rvv~isR~-~~~R~I~Ne~el~~~Lk~~~g~~v~v 340 (469)
. ..++........+++.+++.++++.. .+||++|++|+ ++.|+|.||+||++.|++. |++ +
T Consensus 74 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~p~i~~i~R~~~~~R~i~Ne~el~~~l~~~-~~~--~ 135 (206)
T PF04577_consen 74 Y-----------SPSDFNPSFFPALRDRIRRKLNLPPP----KRPRILYISRRKSGSRRILNEDELLEILKKY-GFE--V 135 (206)
T ss_pred c-----------cccCcCchHHHHHHHHHHHHhCCccc----CCCeEEEEecCCCCCCcCcCHHHHHHHHhhC-CeE--E
Confidence 2 11223344556999999999998753 34599999993 3479999999999999977 755 5
Q ss_pred EEcCCCCCHHHHHHHHccCCEEEEechhHHhhhhcCCCCcEEEEEecCC-CchhHHHHHHHCCCeEEEEec
Q psy12840 341 VVYNRQMNFTKQLEKTYNSDILIGMHGAGLTHLMFLPDWAVVFELYNCE-DEHCYKDLARLRGIKYITWED 410 (469)
Q Consensus 341 v~~~e~lsf~eQi~l~~~adVlIG~HGAgLtn~lFmppga~ViEl~P~~-~~~~y~~lA~~~Gl~Y~~~~~ 410 (469)
+++ +++|+.||++++++||||||+|||||+|++||+||++||||+|+. ....|+.+|+.+|++|.++.+
T Consensus 136 v~~-~~~s~~eqv~~~~~a~viig~hGs~l~n~~F~~~~s~viei~~~~~~~~~~~~~a~~~~~~y~~v~~ 205 (206)
T PF04577_consen 136 VDP-EDLSFEEQVKLFASAKVIIGPHGSALTNLLFMPPGSTVIEIFPPNYYNRHYRNLAQALGIHYYAVYG 205 (206)
T ss_pred EeC-CCCCHHHHHHHhcCCCEEEecCchHhheeeecCCCCEEEEEeCCCCCCHHHHHHHHHcCCeEEEEeC
Confidence 777 599999999999999999999999999999999999999998775 466799999999999999864
No 3
>COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism]
Probab=99.78 E-value=8.3e-18 Score=167.81 Aligned_cols=234 Identities=17% Similarity=0.186 Sum_probs=154.3
Q ss_pred Cccc-cceEEeccccCCCCchhhHhhHHHHHHHHHhhcCCCCCCCCceEEEEEcCcchhhHHHHHHHhhc-CCCceeccC
Q psy12840 167 PIRY-KMDVLKHGQIGAVNMYHHFCDFFNLYASQHVNASHPDVFSTDVHIMIWESYTYASAFADTFRAFT-RHPVWDLKT 244 (469)
Q Consensus 167 ~~r~-~~~vf~~g~~g~~N~yH~f~D~lPly~tl~~~~s~P~~f~~dv~Ivi~d~~~~~~~f~el~~~fs-~~pii~l~~ 244 (469)
.+|- +..||..++. +.||-|++.|.+|..+-++..+. . .+..++......|. .|++..++ +.+++.-
T Consensus 116 Ap~L~r~~v~~~~~~-~~~Yghflle~Lp~l~~i~~l~i----~-~~~pLl~P~~~~wq---adll~m~~~~~~ii~~-- 184 (368)
T COG4421 116 APRLPRGAVFKEWGF-SFEYGHFLLENLPYLWQIKSLGI----L-SDPPLLYPRLTEWQ---ADLLFMAGPDCPIIAT-- 184 (368)
T ss_pred CCcCCCcceeccccc-ccccchhHHhhhHHHHHHhhhcc----c-ccCcccCCcchHHH---HhHHhhcCCCCceeec--
Confidence 3455 3446777775 78999999999998888774332 1 12223322222232 36677665 4555543
Q ss_pred CCCceeeeceEEEcCCccccccccccCccccCCCcchHHHHHHHHHHHhcCCCccccCCCceEEEEEEeCC-CCCcccCH
Q psy12840 245 FTGLTVCFKNLVLPLLPRMIYGLYYNTPLIWGCEKSGLMEAFSKHILHRLKVRRLRRKNSKVRITLLSRDT-QYRNILNE 323 (469)
Q Consensus 245 ~~~~~vCF~~aIv~l~pr~~~gl~y~~pl~~gc~~s~l~~~Fr~~il~~l~i~~~~p~~~~~rvv~isR~~-~~R~I~Ne 323 (469)
...||-..++++..+ .. + ...++..+...+--.. ..+....+.+|+||+. +.|+++||
T Consensus 185 --~p~V~~~~avl~~~~---s~-~-------------~~ha~l~~~~eR~~~~--~~~~~~adkiYVSR~~qS~R~lvnE 243 (368)
T COG4421 185 --APAVPLGPAVLPVSG---SP-R-------------YTHALLAWKDERVIAI--KGKGKVADKIYVSRKAQSMRVLVNE 243 (368)
T ss_pred --ccceeecccccCCCC---Cc-h-------------hhhHHHHHHhhhhhcc--cCCCCCcceEEEechhhHHHHhhCH
Confidence 467898888877532 11 1 1123322222221111 1234455678999964 57999999
Q ss_pred HHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechhHHhhhhcCCCCcEEEEEecC--CCchhH-HHHHHH
Q psy12840 324 QELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGAGLTHLMFLPDWAVVFELYNC--EDEHCY-KDLARL 400 (469)
Q Consensus 324 ~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGAgLtn~lFmppga~ViEl~P~--~~~~~y-~~lA~~ 400 (469)
+|+...+.+. |+.+ |.+ |+++..||+++|++|.||||+|||||+|.+|+++|+.||||.|- +....+ ++++.+
T Consensus 244 ~evE~~~q~~-G~~I--VrP-Etl~~~eQ~~LFr~AkvIvG~~GS~laNavF~~~~~kvvEI~~~~~~~~s~~vr~~~~~ 319 (368)
T COG4421 244 EEVERLLQRS-GLTI--VRP-ETLGPREQARLFRKAKVIVGPHGSGLANAVFAAPGCKVVEIQPGTTNFRSFWVRMANYM 319 (368)
T ss_pred HHHHHHHHhc-CcEE--Eec-hhcCHHHHHHHhhcceEEeccccchhhhheecCCCceEEEeccCCCcchHHHHHHhhhc
Confidence 9999999988 9987 567 79999999999999999999999999999999999999999994 444444 555556
Q ss_pred CCCeEEEEecCCCCCCCCCCCCCCCCCCCCccceeecHHHHHHHHHHH
Q psy12840 401 RGIKYITWEDKSKLEPQDEGHHPNGGAHAKFTNYKFDVAEFVRLVRRG 448 (469)
Q Consensus 401 ~Gl~Y~~~~~~~~l~p~d~~~hp~~g~~~k~~n~~vD~~ef~~~L~~A 448 (469)
.|..|..+... +.... ...+++.++++++...++..
T Consensus 320 ~g~~~~~~ve~-----q~nk~-------~~~~pl~~~l~~~~af~~~~ 355 (368)
T COG4421 320 SGDYYPGYVEH-----QTNKE-------ALEDPLKINLDEAIAFLRRH 355 (368)
T ss_pred ccceeeccccc-----CCCCC-------CCCCcccccchHHHHHhhhh
Confidence 66666665421 11101 11357888888877766543
No 4
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=91.09 E-value=1.3 Score=40.34 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=58.3
Q ss_pred HHHHhcCCCccccCCCceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechh
Q psy12840 289 HILHRLKVRRLRRKNSKVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGA 368 (469)
Q Consensus 289 ~il~~l~i~~~~p~~~~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGA 368 (469)
.++++++++- ...+++++.|+.. .-+.+...|.+. |..|.+++-. +-++.| .+++|||+|..-|.
T Consensus 17 ~ll~~~~~~~-----~gk~v~VvGrs~~-----vG~pla~lL~~~-gatV~~~~~~-t~~l~~---~v~~ADIVvsAtg~ 81 (140)
T cd05212 17 ELLNKEGVRL-----DGKKVLVVGRSGI-----VGAPLQCLLQRD-GATVYSCDWK-TIQLQS---KVHDADVVVVGSPK 81 (140)
T ss_pred HHHHHcCCCC-----CCCEEEEECCCch-----HHHHHHHHHHHC-CCEEEEeCCC-CcCHHH---HHhhCCEEEEecCC
Confidence 3456788853 3348889988653 335577777766 8999888642 334443 68999999999887
Q ss_pred H-HhhhhcCCCCcEEEEEec
Q psy12840 369 G-LTHLMFLPDWAVVFELYN 387 (469)
Q Consensus 369 g-Ltn~lFmppga~ViEl~P 387 (469)
. +-..=|+.||+.|+-+-+
T Consensus 82 ~~~i~~~~ikpGa~Vidvg~ 101 (140)
T cd05212 82 PEKVPTEWIKPGATVINCSP 101 (140)
T ss_pred CCccCHHHcCCCCEEEEcCC
Confidence 5 344557899999995543
No 5
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.82 E-value=1.6 Score=44.38 Aligned_cols=83 Identities=19% Similarity=0.217 Sum_probs=58.8
Q ss_pred HHHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech
Q psy12840 289 HILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG 367 (469)
Q Consensus 289 ~il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG 367 (469)
.++++++++-. .-+++++.|+.. .|. |...|... |..|.+.... + ...-+.+++|||+|+.-|
T Consensus 141 ~ll~~~~i~l~-----Gk~V~ViGrs~~vGrp------la~lL~~~-~atVtv~hs~-t---~~L~~~~~~ADIvI~Avg 204 (279)
T PRK14178 141 TLLHEYKISIA-----GKRAVVVGRSIDVGRP------MAALLLNA-DATVTICHSK-T---ENLKAELRQADILVSAAG 204 (279)
T ss_pred HHHHHcCCCCC-----CCEEEEECCCccccHH------HHHHHHhC-CCeeEEEecC-h---hHHHHHHhhCCEEEECCC
Confidence 35677888542 348899988753 233 44555555 7888776542 3 234456789999999999
Q ss_pred -hHHhhhhcCCCCcEEEEEec
Q psy12840 368 -AGLTHLMFLPDWAVVFELYN 387 (469)
Q Consensus 368 -AgLtn~lFmppga~ViEl~P 387 (469)
+++...=+.+||++||.+--
T Consensus 205 k~~lv~~~~vk~GavVIDVgi 225 (279)
T PRK14178 205 KAGFITPDMVKPGATVIDVGI 225 (279)
T ss_pred cccccCHHHcCCCcEEEEeec
Confidence 88877778899999999963
No 6
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=88.76 E-value=1.6 Score=40.69 Aligned_cols=82 Identities=17% Similarity=0.214 Sum_probs=50.2
Q ss_pred HHHhcCCCccccCCCceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech-h
Q psy12840 290 ILHRLKVRRLRRKNSKVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG-A 368 (469)
Q Consensus 290 il~~l~i~~~~p~~~~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG-A 368 (469)
++++++++- ...++++|.|+.. =-.-|...|.+. |..|.+..-. +..+.+ ...+|||+|..-| +
T Consensus 26 lL~~~~~~l-----~Gk~v~VvGrs~~-----VG~Pla~lL~~~-~atVt~~h~~-T~~l~~---~~~~ADIVVsa~G~~ 90 (160)
T PF02882_consen 26 LLEYYGIDL-----EGKKVVVVGRSNI-----VGKPLAMLLLNK-GATVTICHSK-TKNLQE---ITRRADIVVSAVGKP 90 (160)
T ss_dssp HHHHTT-ST-----TT-EEEEE-TTTT-----THHHHHHHHHHT-T-EEEEE-TT-SSSHHH---HHTTSSEEEE-SSST
T ss_pred HHHhcCCCC-----CCCEEEEECCcCC-----CChHHHHHHHhC-CCeEEeccCC-CCcccc---eeeeccEEeeeeccc
Confidence 556688753 2348899988753 113366666666 8888877553 444444 5679999999888 6
Q ss_pred HHhhhhcCCCCcEEEEEe
Q psy12840 369 GLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 369 gLtn~lFmppga~ViEl~ 386 (469)
++-..=|.+||++||-+-
T Consensus 91 ~~i~~~~ik~gavVIDvG 108 (160)
T PF02882_consen 91 NLIKADWIKPGAVVIDVG 108 (160)
T ss_dssp T-B-GGGS-TTEEEEE--
T ss_pred cccccccccCCcEEEecC
Confidence 777788899999999764
No 7
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.38 E-value=11 Score=38.73 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=56.5
Q ss_pred HHHhcCCCccccCCCceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech-h
Q psy12840 290 ILHRLKVRRLRRKNSKVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG-A 368 (469)
Q Consensus 290 il~~l~i~~~~p~~~~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG-A 368 (469)
+++.++++- ...+|++|.|... --.-+...|.+. |+.|.+.+- .+.++ -++.++|||+|.+-| +
T Consensus 148 ll~~~~i~~-----~Gk~V~viGrs~~-----mG~PmA~~L~~~-g~tVtv~~~-rT~~l---~e~~~~ADIVIsavg~~ 212 (296)
T PRK14188 148 LLRRVHGDL-----SGLNAVVIGRSNL-----VGKPMAQLLLAA-NATVTIAHS-RTRDL---PAVCRRADILVAAVGRP 212 (296)
T ss_pred HHHHhCCCC-----CCCEEEEEcCCcc-----hHHHHHHHHHhC-CCEEEEECC-CCCCH---HHHHhcCCEEEEecCCh
Confidence 556678753 3348899988763 113356666555 899887642 23344 345679999988877 4
Q ss_pred HHhhhhcCCCCcEEEEEe
Q psy12840 369 GLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 369 gLtn~lFmppga~ViEl~ 386 (469)
.+....|++||++||.+-
T Consensus 213 ~~v~~~~lk~GavVIDvG 230 (296)
T PRK14188 213 EMVKGDWIKPGATVIDVG 230 (296)
T ss_pred hhcchheecCCCEEEEcC
Confidence 577778899999999885
No 8
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.17 E-value=8.5 Score=39.27 Aligned_cols=82 Identities=13% Similarity=0.149 Sum_probs=56.8
Q ss_pred HHHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech
Q psy12840 289 HILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG 367 (469)
Q Consensus 289 ~il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG 367 (469)
.++++++|+- ...+++++.|+.. .|- |...|.+. |..|.+..-. +-+ .-+.+++|||+|..-|
T Consensus 147 ~lL~~~~i~l-----~Gk~vvViGrs~iVGkP------la~lL~~~-~atVt~~hs~-t~~---l~~~~~~ADIVV~avG 210 (285)
T PRK14189 147 KMLESIGIPL-----RGAHAVVIGRSNIVGKP------MAMLLLQA-GATVTICHSK-TRD---LAAHTRQADIVVAAVG 210 (285)
T ss_pred HHHHHcCCCC-----CCCEEEEECCCCccHHH------HHHHHHHC-CCEEEEecCC-CCC---HHHHhhhCCEEEEcCC
Confidence 3567788864 3348899988764 333 55666655 7888766432 222 3367889999998887
Q ss_pred -hHHhhhhcCCCCcEEEEEe
Q psy12840 368 -AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 -AgLtn~lFmppga~ViEl~ 386 (469)
+++-..=|++||++||-+-
T Consensus 211 ~~~~i~~~~ik~gavVIDVG 230 (285)
T PRK14189 211 KRNVLTADMVKPGATVIDVG 230 (285)
T ss_pred CcCccCHHHcCCCCEEEEcc
Confidence 4566666789999999885
No 9
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.14 E-value=9.2 Score=39.02 Aligned_cols=82 Identities=21% Similarity=0.204 Sum_probs=56.2
Q ss_pred HHHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech
Q psy12840 289 HILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG 367 (469)
Q Consensus 289 ~il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG 367 (469)
.++++++++- ...++++|.|+.. .|- |...|.+. +..|.+..-. +. +.-+.+++|||+|+.-|
T Consensus 147 ~lL~~~~i~l-----~Gk~vvViGrS~iVG~P------la~lL~~~-~atVt~chs~-t~---~l~~~~~~ADIvI~AvG 210 (284)
T PRK14190 147 ELLKEYNIDI-----SGKHVVVVGRSNIVGKP------VGQLLLNE-NATVTYCHSK-TK---NLAELTKQADILIVAVG 210 (284)
T ss_pred HHHHHcCCCC-----CCCEEEEECCCCccHHH------HHHHHHHC-CCEEEEEeCC-ch---hHHHHHHhCCEEEEecC
Confidence 3567788864 3348899999763 233 44555554 7788776432 22 22357899999998877
Q ss_pred -hHHhhhhcCCCCcEEEEEe
Q psy12840 368 -AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 -AgLtn~lFmppga~ViEl~ 386 (469)
+++...=|.+||++||-+-
T Consensus 211 ~p~~i~~~~ik~gavVIDvG 230 (284)
T PRK14190 211 KPKLITADMVKEGAVVIDVG 230 (284)
T ss_pred CCCcCCHHHcCCCCEEEEee
Confidence 4566666778999999985
No 10
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.29 E-value=12 Score=38.23 Aligned_cols=81 Identities=14% Similarity=0.181 Sum_probs=56.4
Q ss_pred HHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech-
Q psy12840 290 ILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG- 367 (469)
Q Consensus 290 il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG- 367 (469)
++++++++-. .-++++|.|+.. +|- |...|.+. |..|.+..-. +-+ .-+..++|||+|+.-|
T Consensus 149 ll~~y~i~l~-----Gk~vvViGrS~iVGkP------la~lL~~~-~atVt~chs~-T~~---l~~~~~~ADIvIsAvGk 212 (284)
T PRK14177 149 LLKEYGIDVT-----GKNAVVVGRSPILGKP------MAMLLTEM-NATVTLCHSK-TQN---LPSIVRQADIIVGAVGK 212 (284)
T ss_pred HHHHhCCCCC-----CCEEEEECCCCcchHH------HHHHHHHC-CCEEEEeCCC-CCC---HHHHHhhCCEEEEeCCC
Confidence 5667888642 348899988763 233 55555555 7788776542 333 3457899999998877
Q ss_pred hHHhhhhcCCCCcEEEEEe
Q psy12840 368 AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 AgLtn~lFmppga~ViEl~ 386 (469)
+++...=|.+||++||-+-
T Consensus 213 ~~~i~~~~ik~gavVIDvG 231 (284)
T PRK14177 213 PEFIKADWISEGAVLLDAG 231 (284)
T ss_pred cCccCHHHcCCCCEEEEec
Confidence 5666677888999999985
No 11
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.13 E-value=11 Score=38.70 Aligned_cols=81 Identities=17% Similarity=0.141 Sum_probs=56.4
Q ss_pred HHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech-
Q psy12840 290 ILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG- 367 (469)
Q Consensus 290 il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG- 367 (469)
+++.++++- ...+|++|.|++. +| -+...|.+. |+.|.+..-. +.+. -+..++|||+|.+-|
T Consensus 149 lL~~~~i~l-----~Gk~V~vIG~s~ivG~------PmA~~L~~~-gatVtv~~~~-t~~l---~e~~~~ADIVIsavg~ 212 (301)
T PRK14194 149 LLEDTCGDL-----TGKHAVVIGRSNIVGK------PMAALLLQA-HCSVTVVHSR-STDA---KALCRQADIVVAAVGR 212 (301)
T ss_pred HHHHhCCCC-----CCCEEEEECCCCccHH------HHHHHHHHC-CCEEEEECCC-CCCH---HHHHhcCCEEEEecCC
Confidence 556778753 3348899988642 22 255566555 8899877432 3333 356789999998877
Q ss_pred hHHhhhhcCCCCcEEEEEe
Q psy12840 368 AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 AgLtn~lFmppga~ViEl~ 386 (469)
+++....|++||++||.+-
T Consensus 213 ~~~v~~~~ik~GaiVIDvg 231 (301)
T PRK14194 213 PRLIDADWLKPGAVVIDVG 231 (301)
T ss_pred hhcccHhhccCCcEEEEec
Confidence 4667778899999999985
No 12
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.32 E-value=14 Score=37.77 Aligned_cols=81 Identities=17% Similarity=0.211 Sum_probs=56.1
Q ss_pred HHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech-
Q psy12840 290 ILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG- 367 (469)
Q Consensus 290 il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG- 367 (469)
+++.++++- ...++++|.|++. .|. +...|.+. |..|.+..- ..- .--+..++|||+|.+-|
T Consensus 148 lL~~~~i~l-----~Gk~v~vIG~S~ivG~P------la~lL~~~-gatVtv~~s-~t~---~l~~~~~~ADIVI~avg~ 211 (284)
T PRK14179 148 MFREYNVEL-----EGKHAVVIGRSNIVGKP------MAQLLLDK-NATVTLTHS-RTR---NLAEVARKADILVVAIGR 211 (284)
T ss_pred HHHHhCCCC-----CCCEEEEECCCCcCcHH------HHHHHHHC-CCEEEEECC-CCC---CHHHHHhhCCEEEEecCc
Confidence 556788853 2348899988653 233 55555555 888876532 122 23456889999998887
Q ss_pred hHHhhhhcCCCCcEEEEEe
Q psy12840 368 AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 AgLtn~lFmppga~ViEl~ 386 (469)
+++....|.+||++||.+-
T Consensus 212 ~~~v~~~~ik~GavVIDvg 230 (284)
T PRK14179 212 GHFVTKEFVKEGAVVIDVG 230 (284)
T ss_pred cccCCHHHccCCcEEEEec
Confidence 5677778899999999985
No 13
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.22 E-value=9.7 Score=38.86 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=55.3
Q ss_pred HHHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech
Q psy12840 289 HILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG 367 (469)
Q Consensus 289 ~il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG 367 (469)
.++++++++- ...++++|.|+.. .|. +...|.+. |..|.+.... + .+.-+.+++|||+|+.-|
T Consensus 146 ~lL~~~~i~l-----~Gk~vvVvGrs~~VG~P------la~lL~~~-gAtVtv~hs~-t---~~l~~~~~~ADIvV~AvG 209 (285)
T PRK14191 146 RLLKHYHIEI-----KGKDVVIIGASNIVGKP------LAMLMLNA-GASVSVCHIL-T---KDLSFYTQNADIVCVGVG 209 (285)
T ss_pred HHHHHhCCCC-----CCCEEEEECCCchhHHH------HHHHHHHC-CCEEEEEeCC-c---HHHHHHHHhCCEEEEecC
Confidence 3567788853 2348899988753 233 44555555 7888776431 2 233468999999998887
Q ss_pred h-HHhhhhcCCCCcEEEEEe
Q psy12840 368 A-GLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 A-gLtn~lFmppga~ViEl~ 386 (469)
. ++...=|.+||++||.+-
T Consensus 210 ~p~~i~~~~vk~GavVIDvG 229 (285)
T PRK14191 210 KPDLIKASMVKKGAVVVDIG 229 (285)
T ss_pred CCCcCCHHHcCCCcEEEEee
Confidence 4 555555678999999986
No 14
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=74.17 E-value=12 Score=39.25 Aligned_cols=81 Identities=21% Similarity=0.178 Sum_probs=57.2
Q ss_pred HHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech-
Q psy12840 290 ILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG- 367 (469)
Q Consensus 290 il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG- 367 (469)
++++++++- ..-++++|.|+.. +|- |...|.+. +..|.+..-. +.+ .-+..++|||+|..-|
T Consensus 204 LL~~~~i~l-----~GK~vvVIGRS~iVGkP------la~LL~~~-~ATVTicHs~-T~n---l~~~~~~ADIvIsAvGk 267 (345)
T PLN02897 204 LLIRSGVEI-----AGKNAVVIGRSNIVGLP------MSLLLQRH-DATVSTVHAF-TKD---PEQITRKADIVIAAAGI 267 (345)
T ss_pred HHHHhCCCC-----CCCEEEEECCCccccHH------HHHHHHHC-CCEEEEEcCC-CCC---HHHHHhhCCEEEEccCC
Confidence 456788853 2348899999763 233 44455555 7788776542 333 4567999999998877
Q ss_pred hHHhhhhcCCCCcEEEEEe
Q psy12840 368 AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 AgLtn~lFmppga~ViEl~ 386 (469)
+++...=|..||++||-+-
T Consensus 268 p~~v~~d~vk~GavVIDVG 286 (345)
T PLN02897 268 PNLVRGSWLKPGAVVIDVG 286 (345)
T ss_pred cCccCHHHcCCCCEEEEcc
Confidence 6788888899999999885
No 15
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.70 E-value=11 Score=38.58 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=52.8
Q ss_pred HHHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech
Q psy12840 289 HILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG 367 (469)
Q Consensus 289 ~il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG 367 (469)
.+++.|+++- ...++++|.|+.. .|-+... |.+.++.. +..|.+.... +. +..+.+++|||+|+.-|
T Consensus 148 ~ll~~y~i~l-----~Gk~vvViGrS~iVG~Pla~l--L~~~~~~~-~atVt~~hs~-t~---~l~~~~~~ADIvI~Avg 215 (295)
T PRK14174 148 ELLGRYNIET-----KGKHCVVVGRSNIVGKPMANL--MLQKLKES-NCTVTICHSA-TK---DIPSYTRQADILIAAIG 215 (295)
T ss_pred HHHHHhCCCC-----CCCEEEEECCCCcchHHHHHH--HHhccccC-CCEEEEEeCC-ch---hHHHHHHhCCEEEEecC
Confidence 3566788753 2348899999764 3443211 11212223 6777766542 33 34556899999999887
Q ss_pred hH-HhhhhcCCCCcEEEEEe
Q psy12840 368 AG-LTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 Ag-Ltn~lFmppga~ViEl~ 386 (469)
.. +...=|.+||++||-+-
T Consensus 216 ~~~li~~~~vk~GavVIDVg 235 (295)
T PRK14174 216 KARFITADMVKPGAVVIDVG 235 (295)
T ss_pred ccCccCHHHcCCCCEEEEee
Confidence 54 33333468999999885
No 16
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.35 E-value=15 Score=37.45 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=55.6
Q ss_pred HHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech-
Q psy12840 290 ILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG- 367 (469)
Q Consensus 290 il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG- 367 (469)
++++++++. ..-++++|.|+.. .|- |...|.+. +..|.+.... +-++ -+.+++|||+|+.-|
T Consensus 147 ll~~~~i~l-----~Gk~vvViGrS~iVGkP------la~lL~~~-~AtVtichs~-T~nl---~~~~~~ADIvI~AvGk 210 (282)
T PRK14182 147 MLDEARVDP-----KGKRALVVGRSNIVGKP------MAMMLLER-HATVTIAHSR-TADL---AGEVGRADILVAAIGK 210 (282)
T ss_pred HHHHhCCCC-----CCCEEEEECCCCcchHH------HHHHHHHC-CCEEEEeCCC-CCCH---HHHHhhCCEEEEecCC
Confidence 567788854 2348899999763 233 55555554 6777766432 3333 357799999998887
Q ss_pred hHHhhhhcCCCCcEEEEEe
Q psy12840 368 AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 AgLtn~lFmppga~ViEl~ 386 (469)
+++...=|.+||++||-+-
T Consensus 211 ~~~i~~~~ik~gaiVIDvG 229 (282)
T PRK14182 211 AELVKGAWVKEGAVVIDVG 229 (282)
T ss_pred cCccCHHHcCCCCEEEEee
Confidence 5666666788999999885
No 17
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.63 E-value=16 Score=37.16 Aligned_cols=82 Identities=13% Similarity=0.130 Sum_probs=56.3
Q ss_pred HHHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech
Q psy12840 289 HILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG 367 (469)
Q Consensus 289 ~il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG 367 (469)
.++++++++- ..-++++|.|+.. .|- +...|.+. |..|.+..- .+- +.-+.+++|||+|..-|
T Consensus 146 ~lL~~~~i~l-----~Gk~vvViGrS~~VG~P------la~lL~~~-~AtVti~hs-~T~---~l~~~~~~ADIvV~AvG 209 (281)
T PRK14183 146 ELLEEYEIDV-----KGKDVCVVGASNIVGKP------MAALLLNA-NATVDICHI-FTK---DLKAHTKKADIVIVGVG 209 (281)
T ss_pred HHHHHcCCCC-----CCCEEEEECCCCcchHH------HHHHHHHC-CCEEEEeCC-CCc---CHHHHHhhCCEEEEecC
Confidence 3667788853 2348899999753 233 44555554 777765432 122 33467999999998887
Q ss_pred -hHHhhhhcCCCCcEEEEEe
Q psy12840 368 -AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 -AgLtn~lFmppga~ViEl~ 386 (469)
++|...=|..||++||.+-
T Consensus 210 kp~~i~~~~vk~gavvIDvG 229 (281)
T PRK14183 210 KPNLITEDMVKEGAIVIDIG 229 (281)
T ss_pred cccccCHHHcCCCcEEEEee
Confidence 5677777888999999986
No 18
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=70.57 E-value=14 Score=37.67 Aligned_cols=82 Identities=16% Similarity=0.136 Sum_probs=59.7
Q ss_pred HHHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech
Q psy12840 289 HILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG 367 (469)
Q Consensus 289 ~il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG 367 (469)
.++++++++- ...++++|.|+.- +|- +...|.+. ++.|.+..- .+ .+-.+..++|||+|..-|
T Consensus 145 ~ll~~~~i~l-----~Gk~~vVVGrS~iVGkP------la~lL~~~-naTVtvcHs---~T-~~l~~~~k~ADIvv~AvG 208 (283)
T COG0190 145 TLLEEYGIDL-----RGKNVVVVGRSNIVGKP------LALLLLNA-NATVTVCHS---RT-KDLASITKNADIVVVAVG 208 (283)
T ss_pred HHHHHhCCCC-----CCCEEEEECCCCcCcHH------HHHHHHhC-CCEEEEEcC---CC-CCHHHHhhhCCEEEEecC
Confidence 3567788853 3458899999763 344 44555554 788876532 23 566788999999999888
Q ss_pred -hHHhhhhcCCCCcEEEEEe
Q psy12840 368 -AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 -AgLtn~lFmppga~ViEl~ 386 (469)
++|...=|..||++||-+-
T Consensus 209 ~p~~i~~d~vk~gavVIDVG 228 (283)
T COG0190 209 KPHFIKADMVKPGAVVIDVG 228 (283)
T ss_pred CccccccccccCCCEEEecC
Confidence 5777888889999999884
No 19
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.45 E-value=13 Score=37.97 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=56.2
Q ss_pred HHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech-
Q psy12840 290 ILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG- 367 (469)
Q Consensus 290 il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG- 367 (469)
+++.++++-. .-++++|.|+.. .|- |...|.+. +..|.+..-. +- +.-+..++|||+|+.-|
T Consensus 147 lL~~~~i~l~-----Gk~vvVvGrS~iVGkP------la~lL~~~-~atVtichs~-T~---~l~~~~~~ADIvI~AvG~ 210 (284)
T PRK14170 147 LIKSTGTQIE-----GKRAVVIGRSNIVGKP------VAQLLLNE-NATVTIAHSR-TK---DLPQVAKEADILVVATGL 210 (284)
T ss_pred HHHHhCCCCC-----CCEEEEECCCCcchHH------HHHHHHHC-CCEEEEeCCC-CC---CHHHHHhhCCEEEEecCC
Confidence 5567888532 348899999763 233 44555544 7788766432 32 33456899999999888
Q ss_pred hHHhhhhcCCCCcEEEEEe
Q psy12840 368 AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 AgLtn~lFmppga~ViEl~ 386 (469)
+++...=|..||++||-+-
T Consensus 211 ~~~i~~~~vk~GavVIDvG 229 (284)
T PRK14170 211 AKFVKKDYIKPGAIVIDVG 229 (284)
T ss_pred cCccCHHHcCCCCEEEEcc
Confidence 5677777888999999885
No 20
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.18 E-value=13 Score=37.94 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=56.1
Q ss_pred HHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech-
Q psy12840 290 ILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG- 367 (469)
Q Consensus 290 il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG- 367 (469)
++++|+++-. ..++++|.|+.. .|- |...|.+. +..|.+..-. + .+.-+.+++|||+|..-|
T Consensus 148 lL~~y~i~l~-----Gk~vvViGrS~~VGkP------la~lL~~~-~ATVt~chs~-T---~dl~~~~k~ADIvIsAvGk 211 (282)
T PRK14180 148 MLREYGIKTE-----GAYAVVVGASNVVGKP------VSQLLLNA-KATVTTCHRF-T---TDLKSHTTKADILIVAVGK 211 (282)
T ss_pred HHHHhCCCCC-----CCEEEEECCCCcchHH------HHHHHHHC-CCEEEEEcCC-C---CCHHHHhhhcCEEEEccCC
Confidence 5667888542 348899999763 233 44555555 7788766431 3 234456899999998887
Q ss_pred hHHhhhhcCCCCcEEEEEe
Q psy12840 368 AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 AgLtn~lFmppga~ViEl~ 386 (469)
+++...=|.+||++||-+-
T Consensus 212 p~~i~~~~vk~gavVIDvG 230 (282)
T PRK14180 212 PNFITADMVKEGAVVIDVG 230 (282)
T ss_pred cCcCCHHHcCCCcEEEEec
Confidence 5677777788999999885
No 21
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.09 E-value=18 Score=36.95 Aligned_cols=81 Identities=19% Similarity=0.173 Sum_probs=56.3
Q ss_pred HHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech-
Q psy12840 290 ILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG- 367 (469)
Q Consensus 290 il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG- 367 (469)
++++++++-. .-++++|.|+.. .|- |...|.+. |..|.+..- .+.+ .-+..++|||+|..-|
T Consensus 146 lL~~~~i~l~-----Gk~vvViGrS~iVGkP------la~lL~~~-~atVtichs-~T~~---l~~~~~~ADIvI~AvG~ 209 (282)
T PRK14169 146 LLDAYDIDVA-----GKRVVIVGRSNIVGRP------LAGLMVNH-DATVTIAHS-KTRN---LKQLTKEADILVVAVGV 209 (282)
T ss_pred HHHHhCCCCC-----CCEEEEECCCccchHH------HHHHHHHC-CCEEEEECC-CCCC---HHHHHhhCCEEEEccCC
Confidence 5667888642 348899999763 233 45555555 778776643 2333 3457899999998877
Q ss_pred hHHhhhhcCCCCcEEEEEe
Q psy12840 368 AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 AgLtn~lFmppga~ViEl~ 386 (469)
+++...=|.+||++||-+-
T Consensus 210 p~~i~~~~vk~GavVIDvG 228 (282)
T PRK14169 210 PHFIGADAVKPGAVVIDVG 228 (282)
T ss_pred cCccCHHHcCCCcEEEEee
Confidence 5777777899999999885
No 22
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.04 E-value=17 Score=37.00 Aligned_cols=81 Identities=12% Similarity=0.124 Sum_probs=55.9
Q ss_pred HHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech-
Q psy12840 290 ILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG- 367 (469)
Q Consensus 290 il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG- 367 (469)
++++++++- ..-+++++.|+.. .|- |...|.+. +..|.+..-. +- +.-+..++|||+|+.-|
T Consensus 147 lL~~y~i~l-----~Gk~vvVvGrS~iVGkP------la~lL~~~-~atVt~chs~-T~---nl~~~~~~ADIvIsAvGk 210 (282)
T PRK14166 147 LLKAYEIDL-----EGKDAVIIGASNIVGRP------MATMLLNA-GATVSVCHIK-TK---DLSLYTRQADLIIVAAGC 210 (282)
T ss_pred HHHHhCCCC-----CCCEEEEECCCCcchHH------HHHHHHHC-CCEEEEeCCC-CC---CHHHHHhhCCEEEEcCCC
Confidence 566788854 2348899999763 233 44555555 7788765432 32 23447899999998887
Q ss_pred hHHhhhhcCCCCcEEEEEe
Q psy12840 368 AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 AgLtn~lFmppga~ViEl~ 386 (469)
+++...=|.+||++||-+-
T Consensus 211 p~~i~~~~vk~GavVIDvG 229 (282)
T PRK14166 211 VNLLRSDMVKEGVIVVDVG 229 (282)
T ss_pred cCccCHHHcCCCCEEEEec
Confidence 5677777888999999885
No 23
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.88 E-value=21 Score=36.49 Aligned_cols=83 Identities=16% Similarity=0.198 Sum_probs=56.6
Q ss_pred HHHhcCCCccccCCCceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechhH
Q psy12840 290 ILHRLKVRRLRRKNSKVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGAG 369 (469)
Q Consensus 290 il~~l~i~~~~p~~~~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGAg 369 (469)
++++++++- ..-+++++.|+.. + -.-+...|.+. |..|.+..-. + .+.-+.+++|||+|+.-|..
T Consensus 148 ll~~~~i~l-----~Gk~vvVIGrs~~----V-G~pla~lL~~~-gatVtv~~s~-t---~~l~~~~~~ADIVIsAvg~p 212 (286)
T PRK14175 148 ILKHADIDL-----EGKNAVVIGRSHI----V-GQPVSKLLLQK-NASVTILHSR-S---KDMASYLKDADVIVSAVGKP 212 (286)
T ss_pred HHHHcCCCC-----CCCEEEEECCCch----h-HHHHHHHHHHC-CCeEEEEeCC-c---hhHHHHHhhCCEEEECCCCC
Confidence 456677753 2348899988652 0 12255666655 8888877532 2 23446799999999999987
Q ss_pred -HhhhhcCCCCcEEEEEec
Q psy12840 370 -LTHLMFLPDWAVVFELYN 387 (469)
Q Consensus 370 -Ltn~lFmppga~ViEl~P 387 (469)
+...=+.+||++||.+-.
T Consensus 213 ~~i~~~~vk~gavVIDvGi 231 (286)
T PRK14175 213 GLVTKDVVKEGAVIIDVGN 231 (286)
T ss_pred cccCHHHcCCCcEEEEcCC
Confidence 555556789999999964
No 24
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.56 E-value=18 Score=36.75 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=56.0
Q ss_pred HHHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech
Q psy12840 289 HILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG 367 (469)
Q Consensus 289 ~il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG 367 (469)
.++++++++-. .-++++|.|+.. .|- |...|.+. |..|.+..-. +- +.-+..++|||+|+.-|
T Consensus 147 ~lL~~~~i~l~-----Gk~vvViGrS~~VGkP------la~lL~~~-~AtVt~chs~-T~---~l~~~~~~ADIvIsAvG 210 (278)
T PRK14172 147 TLIKSLNIDIE-----GKEVVVIGRSNIVGKP------VAQLLLNE-NATVTICHSK-TK---NLKEVCKKADILVVAIG 210 (278)
T ss_pred HHHHHhCCCCC-----CCEEEEECCCccchHH------HHHHHHHC-CCEEEEeCCC-CC---CHHHHHhhCCEEEEcCC
Confidence 35677888542 348899998763 233 45555555 7788776432 33 34456789999998877
Q ss_pred -hHHhhhhcCCCCcEEEEEe
Q psy12840 368 -AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 -AgLtn~lFmppga~ViEl~ 386 (469)
+++...=|.+||++||-+-
T Consensus 211 kp~~i~~~~ik~gavVIDvG 230 (278)
T PRK14172 211 RPKFIDEEYVKEGAIVIDVG 230 (278)
T ss_pred CcCccCHHHcCCCcEEEEee
Confidence 5666666788999999984
No 25
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.43 E-value=18 Score=36.97 Aligned_cols=81 Identities=14% Similarity=0.162 Sum_probs=55.3
Q ss_pred HHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech-
Q psy12840 290 ILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG- 367 (469)
Q Consensus 290 il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG- 367 (469)
++++++++-. .-++++|.|+.- .|- |...|.+. +..|.+..- .+.+ .-+..++|||+|..-|
T Consensus 149 lL~~y~i~l~-----GK~vvViGrS~iVGkP------la~lL~~~-~ATVtichs-~T~~---L~~~~~~ADIvV~AvGk 212 (288)
T PRK14171 149 VIKKYEPNLT-----GKNVVIIGRSNIVGKP------LSALLLKE-NCSVTICHS-KTHN---LSSITSKADIVVAAIGS 212 (288)
T ss_pred HHHHhCCCCC-----CCEEEEECCCCcchHH------HHHHHHHC-CCEEEEeCC-CCCC---HHHHHhhCCEEEEccCC
Confidence 5567788532 337899988763 233 55555555 778776543 2333 3457889999999887
Q ss_pred hHHhhhhcCCCCcEEEEEe
Q psy12840 368 AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 AgLtn~lFmppga~ViEl~ 386 (469)
+++...=|..||++||-+-
T Consensus 213 p~~i~~~~vk~GavVIDvG 231 (288)
T PRK14171 213 PLKLTAEYFNPESIVIDVG 231 (288)
T ss_pred CCccCHHHcCCCCEEEEee
Confidence 4566667788999999885
No 26
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.12 E-value=18 Score=37.16 Aligned_cols=82 Identities=17% Similarity=0.160 Sum_probs=55.7
Q ss_pred HHHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech
Q psy12840 289 HILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG 367 (469)
Q Consensus 289 ~il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG 367 (469)
.+++.++++-. .-++++|.|+.- +|- |...|.+. |..|.+..-. +-+ .-+..++|||+|..-|
T Consensus 147 ~lL~~~~i~l~-----Gk~vvVIGrS~iVGkP------la~lL~~~-~atVtv~hs~-T~~---l~~~~~~ADIvIsAvG 210 (297)
T PRK14186 147 RLLRSQQIDIA-----GKKAVVVGRSILVGKP------LALMLLAA-NATVTIAHSR-TQD---LASITREADILVAAAG 210 (297)
T ss_pred HHHHHhCCCCC-----CCEEEEECCCccchHH------HHHHHHHC-CCEEEEeCCC-CCC---HHHHHhhCCEEEEccC
Confidence 35677888542 348899999763 233 45555555 7888776432 333 4457899999998877
Q ss_pred -hHHhhhhcCCCCcEEEEEe
Q psy12840 368 -AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 -AgLtn~lFmppga~ViEl~ 386 (469)
+++...=|..||++||-+-
T Consensus 211 kp~~i~~~~ik~gavVIDvG 230 (297)
T PRK14186 211 RPNLIGAEMVKPGAVVVDVG 230 (297)
T ss_pred CcCccCHHHcCCCCEEEEec
Confidence 4555566788999999885
No 27
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.08 E-value=18 Score=36.91 Aligned_cols=81 Identities=17% Similarity=0.171 Sum_probs=55.0
Q ss_pred HHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech-
Q psy12840 290 ILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG- 367 (469)
Q Consensus 290 il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG- 367 (469)
+++.|+++- ...++++|.|+.. .|- |...|.+. +..|.+..- .+- +.-+..++|||+|..-|
T Consensus 145 lL~~~~i~l-----~Gk~vvViGrS~iVGkP------la~lL~~~-~aTVtichs-~T~---~l~~~~~~ADIvIsAvGk 208 (287)
T PRK14173 145 LLKHYGIPL-----AGKEVVVVGRSNIVGKP------LAALLLRE-DATVTLAHS-KTQ---DLPAVTRRADVLVVAVGR 208 (287)
T ss_pred HHHHcCCCC-----CCCEEEEECCCCccHHH------HHHHHHHC-CCEEEEeCC-CCC---CHHHHHhhCCEEEEecCC
Confidence 566788853 2348899999763 233 44555544 778776643 233 34467899999998887
Q ss_pred hHHhhhhcCCCCcEEEEEe
Q psy12840 368 AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 AgLtn~lFmppga~ViEl~ 386 (469)
+++-..=|.+||++||-+-
T Consensus 209 p~~i~~~~vk~GavVIDVG 227 (287)
T PRK14173 209 PHLITPEMVRPGAVVVDVG 227 (287)
T ss_pred cCccCHHHcCCCCEEEEcc
Confidence 4566666778999999875
No 28
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=67.55 E-value=18 Score=38.12 Aligned_cols=82 Identities=26% Similarity=0.271 Sum_probs=56.8
Q ss_pred HHHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech
Q psy12840 289 HILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG 367 (469)
Q Consensus 289 ~il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG 367 (469)
.++++++++- ..-++++|.|+.- .|- |...|.+. +..|.+..- .+-+ .-+..++|||+|+.-|
T Consensus 220 elL~~y~i~l-----~GK~vvVIGRS~iVGkP------La~LL~~~-~ATVTicHs-~T~n---l~~~~r~ADIVIsAvG 283 (364)
T PLN02616 220 ELLHRYNVEI-----KGKRAVVIGRSNIVGMP------AALLLQRE-DATVSIVHS-RTKN---PEEITREADIIISAVG 283 (364)
T ss_pred HHHHHhCCCC-----CCCEEEEECCCccccHH------HHHHHHHC-CCeEEEeCC-CCCC---HHHHHhhCCEEEEcCC
Confidence 3566788853 2348899998763 233 44555544 778877654 2433 4456799999998877
Q ss_pred -hHHhhhhcCCCCcEEEEEe
Q psy12840 368 -AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 -AgLtn~lFmppga~ViEl~ 386 (469)
+++...=|..||++||-+-
T Consensus 284 kp~~i~~d~vK~GAvVIDVG 303 (364)
T PLN02616 284 QPNMVRGSWIKPGAVVIDVG 303 (364)
T ss_pred CcCcCCHHHcCCCCEEEecc
Confidence 5677777889999999885
No 29
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.13 E-value=22 Score=36.36 Aligned_cols=82 Identities=16% Similarity=0.130 Sum_probs=55.9
Q ss_pred HHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech-
Q psy12840 290 ILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG- 367 (469)
Q Consensus 290 il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG- 367 (469)
++++++++-. .-+++++.|+.. .| -|...|.+. |..|.+..-. +- +.-+..++|||+|..-|
T Consensus 154 ll~~~~i~l~-----Gk~vvViGrs~iVGk------Pla~lL~~~-~atVtv~hs~-T~---~l~~~~~~ADIvv~AvG~ 217 (287)
T PRK14176 154 ALEEYGVDIE-----GKNAVIVGHSNVVGK------PMAAMLLNR-NATVSVCHVF-TD---DLKKYTLDADILVVATGV 217 (287)
T ss_pred HHHHcCCCCC-----CCEEEEECCCcccHH------HHHHHHHHC-CCEEEEEecc-CC---CHHHHHhhCCEEEEccCC
Confidence 5667888542 348889988652 22 255566655 7888777542 32 33457899999997554
Q ss_pred hHHhhhhcCCCCcEEEEEec
Q psy12840 368 AGLTHLMFLPDWAVVFELYN 387 (469)
Q Consensus 368 AgLtn~lFmppga~ViEl~P 387 (469)
+++...=|.+||++||.+--
T Consensus 218 p~~i~~~~vk~gavVIDvGi 237 (287)
T PRK14176 218 KHLIKADMVKEGAVIFDVGI 237 (287)
T ss_pred ccccCHHHcCCCcEEEEecc
Confidence 55666668899999999864
No 30
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=65.71 E-value=23 Score=36.50 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=55.0
Q ss_pred HHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechh
Q psy12840 290 ILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGA 368 (469)
Q Consensus 290 il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGA 368 (469)
++++++|+- ..-++++|.|+.. .|- |...|.+. |..|.+..-. +-+ .-+..++|||+|..-|-
T Consensus 157 lL~~~~i~l-----~Gk~vvVIGRS~iVGkP------la~lL~~~-~ATVtvchs~-T~n---l~~~~~~ADIvv~AvGk 220 (299)
T PLN02516 157 LLSRSGIPI-----KGKKAVVVGRSNIVGLP------VSLLLLKA-DATVTVVHSR-TPD---PESIVREADIVIAAAGQ 220 (299)
T ss_pred HHHHhCCCC-----CCCEEEEECCCccchHH------HHHHHHHC-CCEEEEeCCC-CCC---HHHHHhhCCEEEEcCCC
Confidence 456778853 2348999999763 233 45555555 7888776542 333 34567999999988774
Q ss_pred -HHhhhhcCCCCcEEEEEe
Q psy12840 369 -GLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 369 -gLtn~lFmppga~ViEl~ 386 (469)
++...=|..||++||-+-
T Consensus 221 ~~~i~~~~vk~gavVIDvG 239 (299)
T PLN02516 221 AMMIKGDWIKPGAAVIDVG 239 (299)
T ss_pred cCccCHHHcCCCCEEEEee
Confidence 555555788999999886
No 31
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.80 E-value=23 Score=36.38 Aligned_cols=82 Identities=13% Similarity=0.175 Sum_probs=56.0
Q ss_pred HHHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech
Q psy12840 289 HILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG 367 (469)
Q Consensus 289 ~il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG 367 (469)
.++++++++-. .-++++|.|+.. .|- |...|.+. +..|.+..-. +-+ .-+.+++|||+|..-|
T Consensus 149 ~lL~~~~i~l~-----Gk~vvViGrS~iVGkP------la~lL~~~-~aTVt~chs~-T~~---l~~~~~~ADIvVsAvG 212 (294)
T PRK14187 149 YLIKTITRNLS-----GSDAVVIGRSNIVGKP------MACLLLGE-NCTVTTVHSA-TRD---LADYCSKADILVAAVG 212 (294)
T ss_pred HHHHHhCCCCC-----CCEEEEECCCccchHH------HHHHHhhC-CCEEEEeCCC-CCC---HHHHHhhCCEEEEccC
Confidence 35667888642 348899998763 233 45555555 7788766442 333 3457899999999888
Q ss_pred -hHHhhhhcCCCCcEEEEEe
Q psy12840 368 -AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 -AgLtn~lFmppga~ViEl~ 386 (469)
+++...=|..||++||-+-
T Consensus 213 kp~~i~~~~ik~gaiVIDVG 232 (294)
T PRK14187 213 IPNFVKYSWIKKGAIVIDVG 232 (294)
T ss_pred CcCccCHHHcCCCCEEEEec
Confidence 4566666788999999884
No 32
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.71 E-value=27 Score=35.65 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=54.2
Q ss_pred HHHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhc----CCCcEEEEEEcCCCCCHHHHHHHHccCCEEE
Q psy12840 289 HILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQ----EPSVKVKRVVYNRQMNFTKQLEKTYNSDILI 363 (469)
Q Consensus 289 ~il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~----~~g~~v~vv~~~e~lsf~eQi~l~~~adVlI 363 (469)
.++++|+|+.. .-++++|.|+.. .|- |...|.+ . +..|.+.... + ...-+.+++|||+|
T Consensus 146 ~lL~~~~i~l~-----Gk~vvViGrS~iVG~P------la~lL~~~~~~~-~AtVt~~hs~-t---~~l~~~~~~ADIVI 209 (286)
T PRK14184 146 TLLERYGLSPA-----GKKAVVVGRSNIVGKP------LALMLGAPGKFA-NATVTVCHSR-T---PDLAEECREADFLF 209 (286)
T ss_pred HHHHHhCCCCC-----CCEEEEECCCccchHH------HHHHHhCCcccC-CCEEEEEeCC-c---hhHHHHHHhCCEEE
Confidence 35677888642 348899988763 233 5555554 3 6777766542 2 23445789999999
Q ss_pred EechhH-HhhhhcCCCCcEEEEEe
Q psy12840 364 GMHGAG-LTHLMFLPDWAVVFELY 386 (469)
Q Consensus 364 G~HGAg-Ltn~lFmppga~ViEl~ 386 (469)
+.-|.. +.-.=|.+||++||-+-
T Consensus 210 ~AvG~p~li~~~~vk~GavVIDVG 233 (286)
T PRK14184 210 VAIGRPRFVTADMVKPGAVVVDVG 233 (286)
T ss_pred EecCCCCcCCHHHcCCCCEEEEee
Confidence 988753 33333568999999885
No 33
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=64.21 E-value=20 Score=34.69 Aligned_cols=91 Identities=21% Similarity=0.204 Sum_probs=56.2
Q ss_pred HHHhcCCCcc----ccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcC-------------CCC---C
Q psy12840 290 ILHRLKVRRL----RRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYN-------------RQM---N 348 (469)
Q Consensus 290 il~~l~i~~~----~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~-------------e~l---s 348 (469)
+++++++... .-.-..-++++|.|+.. .|- |...|.+. |..|.+.+-+ +.. +
T Consensus 43 lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkP------la~lL~~~-~AtVti~~~~~~~~~~~~~~~~hs~t~~~~ 115 (197)
T cd01079 43 ILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRP------LAALLAND-GARVYSVDINGIQVFTRGESIRHEKHHVTD 115 (197)
T ss_pred HHHHhCCcccccccCCCCCCCEEEEECCCccchHH------HHHHHHHC-CCEEEEEecCcccccccccccccccccccc
Confidence 5566766311 00123458999998763 233 55555555 7888877410 011 1
Q ss_pred HHH-HHHHHccCCEEEEechh-HH-hhhhcCCCCcEEEEEec
Q psy12840 349 FTK-QLEKTYNSDILIGMHGA-GL-THLMFLPDWAVVFELYN 387 (469)
Q Consensus 349 f~e-Qi~l~~~adVlIG~HGA-gL-tn~lFmppga~ViEl~P 387 (469)
.+. -.+.+++|||+|..-|. ++ ...=|..||++||-+--
T Consensus 116 ~~~~l~~~~~~ADIVIsAvG~~~~~i~~d~ik~GavVIDVGi 157 (197)
T cd01079 116 EEAMTLDCLSQSDVVITGVPSPNYKVPTELLKDGAICINFAS 157 (197)
T ss_pred hhhHHHHHhhhCCEEEEccCCCCCccCHHHcCCCcEEEEcCC
Confidence 122 34678999999988875 44 56778889999998753
No 34
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.47 E-value=24 Score=35.98 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=54.3
Q ss_pred HHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcC-CCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech
Q psy12840 290 ILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQE-PSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG 367 (469)
Q Consensus 290 il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~-~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG 367 (469)
+++.|+++- ...++++|.|+.. .|- |...|.+. .+..|.+..- .+.+ .-+.+++|||+|..-|
T Consensus 148 ll~~~~i~l-----~Gk~vvViGrS~~VGkP------la~lL~~~~~~atVtvchs-~T~~---l~~~~k~ADIvV~AvG 212 (284)
T PRK14193 148 LLRRYDVEL-----AGAHVVVIGRGVTVGRP------IGLLLTRRSENATVTLCHT-GTRD---LAAHTRRADIIVAAAG 212 (284)
T ss_pred HHHHhCCCC-----CCCEEEEECCCCcchHH------HHHHHhhccCCCEEEEeCC-CCCC---HHHHHHhCCEEEEecC
Confidence 556788853 2348899999764 233 44445431 2677776643 2333 3457889999999887
Q ss_pred -hHHhhhhcCCCCcEEEEEe
Q psy12840 368 -AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 -AgLtn~lFmppga~ViEl~ 386 (469)
+++...=|..||++||-+-
T Consensus 213 kp~~i~~~~ik~GavVIDvG 232 (284)
T PRK14193 213 VAHLVTADMVKPGAAVLDVG 232 (284)
T ss_pred CcCccCHHHcCCCCEEEEcc
Confidence 4566666788999999875
No 35
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=63.46 E-value=51 Score=34.23 Aligned_cols=95 Identities=15% Similarity=0.099 Sum_probs=65.8
Q ss_pred CceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEe---chhHHhhhhcCCCCc
Q psy12840 304 SKVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGM---HGAGLTHLMFLPDWA 380 (469)
Q Consensus 304 ~~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~---HGAgLtn~lFmppga 380 (469)
.+..|-+|.-..... .|..||.+.|++. |+++..+-.. ..+ -|+++-+.+|++.|.+ +|..++..|=-+-|.
T Consensus 151 ~~~~vNlig~~~~~~--~d~~el~~ll~~~-G~~v~~~~~~-~~s-~~~i~~~~~A~~nlv~~~~~g~~~a~~l~~~~g~ 225 (399)
T cd00316 151 EPGSVNLIGGYNLGG--GDLRELKRLLEEM-GIRVNALFDG-GTT-VEELRELGNAKLNLVLCRESGLYLARYLEEKYGI 225 (399)
T ss_pred CCCcEEEECCCCCch--hhHHHHHHHHHHc-CCcEEEEcCC-CCC-HHHHHhhccCcEEEEecHhHHHHHHHHHHHHhCC
Confidence 445666775533212 5889999999988 9999876332 345 4567778889888877 466666666444466
Q ss_pred EEEEEecCCC---chhHHHHHHHCCC
Q psy12840 381 VVFELYNCED---EHCYKDLARLRGI 403 (469)
Q Consensus 381 ~ViEl~P~~~---~~~y~~lA~~~Gl 403 (469)
-.+...|.|. ..+++.+|+..|+
T Consensus 226 p~~~~~p~G~~~t~~~l~~i~~~~g~ 251 (399)
T cd00316 226 PYILINPIGLEATDAFLRKLAELFGI 251 (399)
T ss_pred CeEEeCCcCHHHHHHHHHHHHHHhCC
Confidence 5666668873 5689999999995
No 36
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.46 E-value=20 Score=36.65 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=55.7
Q ss_pred HHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech-
Q psy12840 290 ILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG- 367 (469)
Q Consensus 290 il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG- 367 (469)
++++++++- ..-++++|.|+.. .| -|...|.+. |..|.+..-. + .+.-+.+++|||+|..-|
T Consensus 149 ll~~~~i~l-----~Gk~vvViGrs~iVG~------Pla~lL~~~-~atVtv~hs~-T---~~l~~~~~~ADIvi~avG~ 212 (285)
T PRK10792 149 LLERYGIDT-----YGLNAVVVGASNIVGR------PMSLELLLA-GCTVTVCHRF-T---KNLRHHVRNADLLVVAVGK 212 (285)
T ss_pred HHHHcCCCC-----CCCEEEEECCCcccHH------HHHHHHHHC-CCeEEEEECC-C---CCHHHHHhhCCEEEEcCCC
Confidence 556778753 2348899988652 22 255556555 7888776532 2 233457899999999887
Q ss_pred hHHhhhhcCCCCcEEEEEe
Q psy12840 368 AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 AgLtn~lFmppga~ViEl~ 386 (469)
+++...=|.+||++||.+-
T Consensus 213 p~~v~~~~vk~gavVIDvG 231 (285)
T PRK10792 213 PGFIPGEWIKPGAIVIDVG 231 (285)
T ss_pred cccccHHHcCCCcEEEEcc
Confidence 5666667789999999986
No 37
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=56.02 E-value=27 Score=37.34 Aligned_cols=97 Identities=11% Similarity=0.035 Sum_probs=64.3
Q ss_pred ceEEEEEEeCC--CCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEec---hhHHhhhhcCCCC
Q psy12840 305 KVRITLLSRDT--QYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMH---GAGLTHLMFLPDW 379 (469)
Q Consensus 305 ~~rvv~isR~~--~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~H---GAgLtn~lFmppg 379 (469)
+.+|-+|.... +.--.-|.+||.+.|++. |+++..+-.. ..++ |+++-+.+|+.-|.++ |-.++..|.-.=|
T Consensus 155 ~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~-Gl~v~~~~~~-~~~~-~ei~~~~~A~~niv~~~~~g~~~a~~L~~~~g 231 (427)
T cd01971 155 PGLVNLWGPVPYQDPFWRGDLEEIKRVLEGI-GLKVNILFGP-ESNG-EELRSIPKAQFNLVLSPWVGLEFAQHLEEKYG 231 (427)
T ss_pred CCeEEEEeccCCccccccccHHHHHHHHHHC-CCeEEEEECC-CCCH-HHHHhcccCcEEEEEcHhhHHHHHHHHHHHhC
Confidence 44565664321 101124778999999988 9999877442 4564 8888999999555554 4456666655556
Q ss_pred cEEEEE--ecCCC---chhHHHHHHHCCCe
Q psy12840 380 AVVFEL--YNCED---EHCYKDLARLRGIK 404 (469)
Q Consensus 380 a~ViEl--~P~~~---~~~y~~lA~~~Gl~ 404 (469)
.-.+.. +|.|. ..+++.+++..|+.
T Consensus 232 iP~i~~~~~P~G~~~t~~~l~~i~~~~g~~ 261 (427)
T cd01971 232 QPYIHSPTLPIGAKATAEFLRQVAKFAGIE 261 (427)
T ss_pred CceEecCCCccCHHHHHHHHHHHHHHhCCC
Confidence 666665 67873 45888888888863
No 38
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=55.91 E-value=21 Score=33.37 Aligned_cols=75 Identities=17% Similarity=0.102 Sum_probs=50.8
Q ss_pred CceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechhHH-hhhhcCCCCcEE
Q psy12840 304 SKVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGAGL-THLMFLPDWAVV 382 (469)
Q Consensus 304 ~~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGAgL-tn~lFmppga~V 382 (469)
...+++++..+.. =..-+.+.|.+. |+++.+++ -+..+..+.+.+|||||+..|+.- -..=.+++++.|
T Consensus 43 ~gk~vlViG~G~~-----~G~~~a~~L~~~-g~~V~v~~----r~~~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~~vi 112 (168)
T cd01080 43 AGKKVVVVGRSNI-----VGKPLAALLLNR-NATVTVCH----SKTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVV 112 (168)
T ss_pred CCCEEEEECCcHH-----HHHHHHHHHhhC-CCEEEEEE----CCchhHHHHHhhCCEEEEcCCCCceecHHHccCCeEE
Confidence 3458889977541 012366777776 88776553 345677789999999999999942 222225778899
Q ss_pred EEEecC
Q psy12840 383 FELYNC 388 (469)
Q Consensus 383 iEl~P~ 388 (469)
|.+-.+
T Consensus 113 IDla~p 118 (168)
T cd01080 113 IDVGIN 118 (168)
T ss_pred EEccCC
Confidence 998644
No 39
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.82 E-value=38 Score=34.67 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=53.8
Q ss_pred HHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcC-C--CcEEEEEEcCCCCCHHHHHHHHccCCEEEEe
Q psy12840 290 ILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQE-P--SVKVKRVVYNRQMNFTKQLEKTYNSDILIGM 365 (469)
Q Consensus 290 il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~-~--g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~ 365 (469)
+++.++++- ...++++|.|+.. .|- |...|.+. + +..|.+..- .+- +.-+.+++|||+|+.
T Consensus 143 lL~~~~i~l-----~Gk~vvViGrS~iVGkP------la~lL~~~~~~~~AtVtvchs-~T~---~l~~~~~~ADIvV~A 207 (287)
T PRK14181 143 LLKYYEIPL-----HGRHVAIVGRSNIVGKP------LAALLMQKHPDTNATVTLLHS-QSE---NLTEILKTADIIIAA 207 (287)
T ss_pred HHHHhCCCC-----CCCEEEEECCCccchHH------HHHHHHhCcCCCCCEEEEeCC-CCC---CHHHHHhhCCEEEEc
Confidence 566788854 2348899999763 233 44444332 1 567765532 132 334468999999988
Q ss_pred ch-hHHhhhhcCCCCcEEEEEe
Q psy12840 366 HG-AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 366 HG-AgLtn~lFmppga~ViEl~ 386 (469)
-| +++...=|..||++||-+-
T Consensus 208 vG~p~~i~~~~ik~GavVIDvG 229 (287)
T PRK14181 208 IGVPLFIKEEMIAEKAVIVDVG 229 (287)
T ss_pred cCCcCccCHHHcCCCCEEEEec
Confidence 77 5666777889999999885
No 40
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.93 E-value=50 Score=33.94 Aligned_cols=82 Identities=22% Similarity=0.265 Sum_probs=54.1
Q ss_pred HHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcC---CCcEEEEEEcCCCCCHHHHHHHHccCCEEEEe
Q psy12840 290 ILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQE---PSVKVKRVVYNRQMNFTKQLEKTYNSDILIGM 365 (469)
Q Consensus 290 il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~---~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~ 365 (469)
+++.++++- ...++++|.|+.. .|- |...|.+. .+..|.+..- .+-+ .-+.+++|||+|+.
T Consensus 151 lL~~~~i~l-----~Gk~vvViGrS~iVGkP------la~lL~~~~~~~~atVtv~hs-~T~~---l~~~~~~ADIvVsA 215 (297)
T PRK14168 151 MLVRSGVET-----SGAEVVVVGRSNIVGKP------IANMMTQKGPGANATVTIVHT-RSKN---LARHCQRADILIVA 215 (297)
T ss_pred HHHHhCCCC-----CCCEEEEECCCCcccHH------HHHHHHhcccCCCCEEEEecC-CCcC---HHHHHhhCCEEEEe
Confidence 556778854 2348899999764 333 44444332 1466665533 2333 33567999999987
Q ss_pred ch-hHHhhhhcCCCCcEEEEEe
Q psy12840 366 HG-AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 366 HG-AgLtn~lFmppga~ViEl~ 386 (469)
-| +++...=|.+||++||-+-
T Consensus 216 vGkp~~i~~~~ik~gavVIDvG 237 (297)
T PRK14168 216 AGVPNLVKPEWIKPGATVIDVG 237 (297)
T ss_pred cCCcCccCHHHcCCCCEEEecC
Confidence 66 6777777889999999884
No 41
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=53.42 E-value=46 Score=30.00 Aligned_cols=89 Identities=17% Similarity=0.216 Sum_probs=54.0
Q ss_pred CcccCHHHHHHHHhcCCCcEEEEEEcC--CCCCHHHH-------------HHHHccCCEEEEechhHHhhhhcCCCCcEE
Q psy12840 318 RNILNEQELIEALSQEPSVKVKRVVYN--RQMNFTKQ-------------LEKTYNSDILIGMHGAGLTHLMFLPDWAVV 382 (469)
Q Consensus 318 R~I~Ne~el~~~Lk~~~g~~v~vv~~~--e~lsf~eQ-------------i~l~~~adVlIG~HGAgLtn~lFmppga~V 382 (469)
||+.=--+.++.|.+. |++|.+ +-+ +...|.++ -+++.+||||+++..-...-.-.|++|.++
T Consensus 11 ~RVal~P~~v~~L~~~-G~~V~V-E~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~~~e~~~l~~g~~l 88 (136)
T PF05222_consen 11 RRVALTPEDVKKLVKL-GHEVLV-ESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPSEEELALLKPGQTL 88 (136)
T ss_dssp --BSS-HHHHHHHHHT-TSEEEE-ETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS---GGGGGGS-TTCEE
T ss_pred cEecccHHHHHHHHhC-CCEEEE-ECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCCHHHHhhcCCCcEE
Confidence 4444445556666655 777754 333 23444433 268899999999999999999999999999
Q ss_pred EEEecCCC-chhHHHHHHHCCCeEEEEe
Q psy12840 383 FELYNCED-EHCYKDLARLRGIKYITWE 409 (469)
Q Consensus 383 iEl~P~~~-~~~y~~lA~~~Gl~Y~~~~ 409 (469)
|=++.+.. ......+++ .|+..+++.
T Consensus 89 i~~~~~~~~~~~~~~l~~-~~it~~a~E 115 (136)
T PF05222_consen 89 IGFLHPAQNKELLEALAK-KGITAFALE 115 (136)
T ss_dssp EEE--GGGHHHHHHHHHH-CTEEEEEGG
T ss_pred EEeeccccCHHHHHHHHH-CCCEEEEhh
Confidence 98885543 334455554 788888875
No 42
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.16 E-value=47 Score=34.13 Aligned_cols=83 Identities=19% Similarity=0.217 Sum_probs=54.8
Q ss_pred HHHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcC---CCcEEEEEEcCCCCCHHHHHHHHccCCEEEE
Q psy12840 289 HILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQE---PSVKVKRVVYNRQMNFTKQLEKTYNSDILIG 364 (469)
Q Consensus 289 ~il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~---~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG 364 (469)
.+++.++|+- ..-++++|.|+.. .|- |...|.+. .+..|.+..- .+-+ .-+.+++|||+|+
T Consensus 146 ~lL~~~~i~l-----~Gk~vvViGrS~iVGkP------la~lL~~~~~~~~aTVtvchs-~T~~---l~~~~~~ADIvIs 210 (297)
T PRK14167 146 KLLAAAGVDT-----EGADVVVVGRSDIVGKP------MANLLIQKADGGNATVTVCHS-RTDD---LAAKTRRADIVVA 210 (297)
T ss_pred HHHHHhCCCC-----CCCEEEEECCCcccHHH------HHHHHhcCccCCCCEEEEeCC-CCCC---HHHHHhhCCEEEE
Confidence 3567788853 2348899999763 233 34444332 1466665432 2322 3467899999999
Q ss_pred ech-hHHhhhhcCCCCcEEEEEe
Q psy12840 365 MHG-AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 365 ~HG-AgLtn~lFmppga~ViEl~ 386 (469)
.-| +++...=|.+||++||-+-
T Consensus 211 AvGkp~~i~~~~ik~gaiVIDvG 233 (297)
T PRK14167 211 AAGVPELIDGSMLSEGATVIDVG 233 (297)
T ss_pred ccCCcCccCHHHcCCCCEEEEcc
Confidence 877 6777777889999999885
No 43
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=51.13 E-value=1.7e+02 Score=30.65 Aligned_cols=94 Identities=9% Similarity=-0.004 Sum_probs=62.2
Q ss_pred CceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEec---hhHHhhhhcCCCCc
Q psy12840 304 SKVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMH---GAGLTHLMFLPDWA 380 (469)
Q Consensus 304 ~~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~H---GAgLtn~lFmppga 380 (469)
.+..|-+|.-. ...-|..||.+.|++. |+++..+-.. ..+++ +++-+.+|.+-|.+. |-.++..|--+=|.
T Consensus 159 ~~~~VNiig~~---~~~~d~~el~~lL~~~-Gi~~~~~~~~-~~~~~-~i~~~~~A~~niv~~~~~~~~~a~~L~~r~Gi 232 (406)
T cd01967 159 TPYDVNIIGEY---NIGGDAWVIKPLLEEL-GIRVNATFTG-DGTVD-ELRRAHRAKLNLVHCSRSMNYLAREMEERYGI 232 (406)
T ss_pred CCCeEEEEecc---ccchhHHHHHHHHHHc-CCEEEEEeCC-CCCHH-HHhhCccCCEEEEEChHHHHHHHHHHHHhhCC
Confidence 34566666532 2234789999999988 9999876552 55655 556699999766654 44455544434455
Q ss_pred EEEEEecCCC---chhHHHHHHHCCC
Q psy12840 381 VVFELYNCED---EHCYKDLARLRGI 403 (469)
Q Consensus 381 ~ViEl~P~~~---~~~y~~lA~~~Gl 403 (469)
-.+...|.|. ..+++.|++..|.
T Consensus 233 P~~~~~p~G~~~t~~~l~~l~~~lg~ 258 (406)
T cd01967 233 PYMEVNFYGFEDTSESLRKIAKFFGD 258 (406)
T ss_pred CEEEecCCcHHHHHHHHHHHHHHhCC
Confidence 5566667762 4589999999987
No 44
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=47.64 E-value=88 Score=31.70 Aligned_cols=59 Identities=29% Similarity=0.312 Sum_probs=42.0
Q ss_pred HHHHHHHHccCCEEEEechhHHhhh-h--cCCCCcEEEEEecCCCchhHHHHHHHCCCeEEEE
Q psy12840 349 FTKQLEKTYNSDILIGMHGAGLTHL-M--FLPDWAVVFELYNCEDEHCYKDLARLRGIKYITW 408 (469)
Q Consensus 349 f~eQi~l~~~adVlIG~HGAgLtn~-l--Fmppga~ViEl~P~~~~~~y~~lA~~~Gl~Y~~~ 408 (469)
+.+.-+.+.++||||-.-..++.+. + .|++++.+|.+-.......| ..|+..|++..-.
T Consensus 200 ~~~l~~~l~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~Pg~tdf-~~Ak~~G~~a~~~ 261 (287)
T TIGR02853 200 LNKLEEKVAEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKPGGTDF-EYAKKRGIKALLA 261 (287)
T ss_pred HHHHHHHhccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCCCCCCH-HHHHHCCCEEEEe
Confidence 3444567789999998766665432 2 37899999999754344456 7999999987653
No 45
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.58 E-value=78 Score=32.50 Aligned_cols=83 Identities=18% Similarity=0.269 Sum_probs=54.9
Q ss_pred HHHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcC---CCcEEEEEEcCCCCCHHHHHHHHccCCEEEE
Q psy12840 289 HILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQE---PSVKVKRVVYNRQMNFTKQLEKTYNSDILIG 364 (469)
Q Consensus 289 ~il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~---~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG 364 (469)
.++++++++-. .-++++|.|+.. .|- |...|.+. .+..|.+..- .+.++ -+..++|||+|+
T Consensus 146 ~lL~~~~i~l~-----GK~vvViGrS~iVGkP------la~lL~~~~~~~~aTVtvchs-~T~nl---~~~~~~ADIvIs 210 (293)
T PRK14185 146 ELLKRYHIETS-----GKKCVVLGRSNIVGKP------MAQLMMQKAYPGDCTVTVCHS-RSKNL---KKECLEADIIIA 210 (293)
T ss_pred HHHHHhCCCCC-----CCEEEEECCCccchHH------HHHHHHcCCCCCCCEEEEecC-CCCCH---HHHHhhCCEEEE
Confidence 35677888632 348899999763 233 44445433 1567766543 24343 446789999998
Q ss_pred ech-hHHhhhhcCCCCcEEEEEe
Q psy12840 365 MHG-AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 365 ~HG-AgLtn~lFmppga~ViEl~ 386 (469)
.-| +++...=|.+||++||-+-
T Consensus 211 AvGkp~~i~~~~vk~gavVIDvG 233 (293)
T PRK14185 211 ALGQPEFVKADMVKEGAVVIDVG 233 (293)
T ss_pred ccCCcCccCHHHcCCCCEEEEec
Confidence 877 5666777888999999885
No 46
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=46.22 E-value=28 Score=31.83 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=31.4
Q ss_pred HHHHHhcCCCcEEEEEEcC-CCCCHHHHHHHH--ccCCEEEEechhHH
Q psy12840 326 LIEALSQEPSVKVKRVVYN-RQMNFTKQLEKT--YNSDILIGMHGAGL 370 (469)
Q Consensus 326 l~~~Lk~~~g~~v~vv~~~-e~lsf~eQi~l~--~~adVlIG~HGAgL 370 (469)
|.+.|++. |++|...... ..+++.+.+++. .++|++|+.|--+.
T Consensus 33 l~~~L~~~-g~~V~~tr~~d~~~~l~~R~~~an~~~ad~~isiH~na~ 79 (175)
T PF01520_consen 33 LKKELEKH-GIKVYLTRDNDSDVSLQERAALANSWGADLFISIHFNAS 79 (175)
T ss_dssp HHHHHHHT-TEEEEESSSSSHCCCHHHHHHHHHHTTSSEEEEEEEE-S
T ss_pred HHHHHhcC-CcEEEEeCCCCCCCCHHHHHHHHHhcccCEEEEEeecCc
Confidence 44455555 8777655443 246899999998 89999999996654
No 47
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.06 E-value=61 Score=32.96 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCCccccCCCceEEEEEEeCC-CCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEE
Q psy12840 284 EAFSKHILHRLKVRRLRRKNSKVRITLLSRDT-QYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDIL 362 (469)
Q Consensus 284 ~~Fr~~il~~l~i~~~~p~~~~~rvv~isR~~-~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVl 362 (469)
.+|.+ +++.++++.. .-+++++.|++ -.|- +...|.+. |..|.+..-. ..++ .+.+.+|||+
T Consensus 144 ~gii~-~L~~~~i~l~-----Gk~vvViG~gg~vGkp------ia~~L~~~-gatVtv~~~~-t~~L---~~~~~~aDIv 206 (283)
T PRK14192 144 AGIMR-LLKAYNIELA-----GKHAVVVGRSAILGKP------MAMMLLNA-NATVTICHSR-TQNL---PELVKQADII 206 (283)
T ss_pred HHHHH-HHHHcCCCCC-----CCEEEEECCcHHHHHH------HHHHHHhC-CCEEEEEeCC-chhH---HHHhccCCEE
Confidence 34444 3445676532 23789999986 3344 45566655 7787776542 3333 4456899999
Q ss_pred EEechh-HHhhhhcCCCCcEEEEEe
Q psy12840 363 IGMHGA-GLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 363 IG~HGA-gLtn~lFmppga~ViEl~ 386 (469)
|..-|- ++.-.=+++||+.|+.+.
T Consensus 207 I~AtG~~~~v~~~~lk~gavViDvg 231 (283)
T PRK14192 207 VGAVGKPELIKKDWIKQGAVVVDAG 231 (283)
T ss_pred EEccCCCCcCCHHHcCCCCEEEEEE
Confidence 999862 222223467899999885
No 48
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=45.50 E-value=52 Score=29.99 Aligned_cols=46 Identities=15% Similarity=0.271 Sum_probs=34.6
Q ss_pred HHHHHhcCCCcEEEEEEcC-CCCCHHHHHHHHcc--CCEEEEechhHHhh
Q psy12840 326 LIEALSQEPSVKVKRVVYN-RQMNFTKQLEKTYN--SDILIGMHGAGLTH 372 (469)
Q Consensus 326 l~~~Lk~~~g~~v~vv~~~-e~lsf~eQi~l~~~--adVlIG~HGAgLtn 372 (469)
|.+.|++. |++|.....+ ...++.+.+...++ +|++|..|--+-.+
T Consensus 34 l~~~L~~~-G~~v~~~r~~~~~~~l~~r~~~an~~~~d~~islH~na~~~ 82 (172)
T cd02696 34 LAKLLEAA-GAKVVLTRDDDTFVSLSERVAIANRAGADLFISIHANAAPN 82 (172)
T ss_pred HHHHHHHC-CCEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEeecCCCC
Confidence 45555555 8888766553 23789999999885 99999999877666
No 49
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=44.85 E-value=82 Score=32.03 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=39.8
Q ss_pred HHHHHHccCCEEEEechhHHh-hhhc--CCCCcEEEEEecCCCchhHHHHHHHCCCeEEEEec
Q psy12840 351 KQLEKTYNSDILIGMHGAGLT-HLMF--LPDWAVVFELYNCEDEHCYKDLARLRGIKYITWED 410 (469)
Q Consensus 351 eQi~l~~~adVlIG~HGAgLt-n~lF--mppga~ViEl~P~~~~~~y~~lA~~~Gl~Y~~~~~ 410 (469)
+-.+.+.++||||..-++.+. ..++ |+||++||.+--......| ..|+..|++...+.+
T Consensus 203 ~l~~~l~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd~-~~a~~~Gv~~~~~~~ 264 (296)
T PRK08306 203 ELAEEVGKIDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPGGTDF-EYAEKRGIKALLAPG 264 (296)
T ss_pred HHHHHhCCCCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCCCcCe-eehhhCCeEEEEECC
Confidence 334567899999976665543 3333 8999999999633222445 578888988876543
No 50
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=42.67 E-value=1.6e+02 Score=31.47 Aligned_cols=90 Identities=8% Similarity=-0.011 Sum_probs=59.2
Q ss_pred ceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCE--EEEechhHHhhhhcCCCCcEE
Q psy12840 305 KVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDI--LIGMHGAGLTHLMFLPDWAVV 382 (469)
Q Consensus 305 ~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adV--lIG~HGAgLtn~lFmppga~V 382 (469)
+.+|.+|..-. -.+.+|+.+.|++. |.++..+-+ .-+++| ++-+.+|.. +++..+...+-.|= .-|.-.
T Consensus 159 ~~~vniiG~~~----~~d~~ei~~lL~~~-Gl~~~~~l~--~~~~~e-l~~~~~A~~~i~~~~~~~~~a~~Le-~~GvP~ 229 (416)
T cd01980 159 EPSLALLGEMF----PADPVAIGSVLERM-GLAAVPVVP--TREWRE-LYAAGDAAAVAALHPFYTATIRELE-EAGRPI 229 (416)
T ss_pred CCeEEEEccCC----CCCHHHHHHHHHHc-CCceeeEeC--CCCHHH-HhhcccCcEEEEeChhHHHHHHHHH-HcCCce
Confidence 34777775321 23567898999988 999975433 346554 555665555 55556555555554 347666
Q ss_pred EEEecCCC---chhHHHHHHHCCC
Q psy12840 383 FELYNCED---EHCYKDLARLRGI 403 (469)
Q Consensus 383 iEl~P~~~---~~~y~~lA~~~Gl 403 (469)
+...|.|. ..+++.||+..|.
T Consensus 230 ~~~~piG~~~td~~l~~la~~~g~ 253 (416)
T cd01980 230 VSGAPVGADGTAAWLEAVGEALGL 253 (416)
T ss_pred ecCCCcCchHHHHHHHHHHHHhCc
Confidence 66678773 5699999999996
No 51
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=42.64 E-value=1.2e+02 Score=30.94 Aligned_cols=82 Identities=21% Similarity=0.202 Sum_probs=52.5
Q ss_pred HHHHHHHhcCCCcEEEEEEcC-CCC-----CHH-HHHHHHccCCEEEEe----------chh--------HHhhhhcCCC
Q psy12840 324 QELIEALSQEPSVKVKRVVYN-RQM-----NFT-KQLEKTYNSDILIGM----------HGA--------GLTHLMFLPD 378 (469)
Q Consensus 324 ~el~~~Lk~~~g~~v~vv~~~-e~l-----sf~-eQi~l~~~adVlIG~----------HGA--------gLtn~lFmpp 378 (469)
-++++.|.+. |++|.+.-+. +.+ .+. ..-+.+.+|||+|.+ ++. .-..+=-||+
T Consensus 15 ~~~~~~l~~~-G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~ 93 (296)
T PRK08306 15 LELIRKLVEL-GAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPE 93 (296)
T ss_pred HHHHHHHHHC-CCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCC
Confidence 5688888887 9999886664 212 111 223578999999988 333 2233446899
Q ss_pred CcEEEEEecCCCchhHHHHHHHCCCeEEEEe
Q psy12840 379 WAVVFELYNCEDEHCYKDLARLRGIKYITWE 409 (469)
Q Consensus 379 ga~ViEl~P~~~~~~y~~lA~~~Gl~Y~~~~ 409 (469)
|..|+ + -. ........+..+|+..+.+.
T Consensus 94 ~~~v~-~-G~-~~~~~~~~~~~~gi~~~~~~ 121 (296)
T PRK08306 94 HCTIF-S-GI-ANPYLKELAKETNRKLVELF 121 (296)
T ss_pred CCEEE-E-ec-CCHHHHHHHHHCCCeEEEEe
Confidence 97555 2 11 12235678889999887665
No 52
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=42.01 E-value=50 Score=33.71 Aligned_cols=55 Identities=13% Similarity=0.244 Sum_probs=37.5
Q ss_pred HHHHHhcCCCcEEEEEEcC-CCCCHHHHHHHHc--cCCEEEEechhHHhhhhcCCCCcEEEEEe
Q psy12840 326 LIEALSQEPSVKVKRVVYN-RQMNFTKQLEKTY--NSDILIGMHGAGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 326 l~~~Lk~~~g~~v~vv~~~-e~lsf~eQi~l~~--~adVlIG~HGAgLtn~lFmppga~ViEl~ 386 (469)
|.+.|++. |++|....-. ..+++.+-+++.+ +||++|++|--+.+ .|.+.=+|+|
T Consensus 91 l~~~L~~~-G~~V~lTR~~D~~vsL~~R~~~An~~~ADlFISIH~Ns~~-----~~~a~G~evy 148 (287)
T PRK10319 91 VRSILRNH-GIDARLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGFT-----NPKAAGASVF 148 (287)
T ss_pred HHHHHHHC-CCEEEEeCCCCCCCCHHHHHHHHHhcCCCEEEEecCCCCC-----CCCCcEEEEE
Confidence 34455555 9999876654 4578888888887 89999999964432 2344555655
No 53
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=40.27 E-value=54 Score=32.28 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHccCCEEEEechhHHhhhhcCCCCcEEEEEecCCC
Q psy12840 345 RQMNFTKQLEKTYNSDILIGMHGAGLTHLMFLPDWAVVFELYNCED 390 (469)
Q Consensus 345 e~lsf~eQi~l~~~adVlIG~HGAgLtn~lFmppga~ViEl~P~~~ 390 (469)
...++.|.++++++||++||+-. |..|+--+ =|+-+|-|+.+..
T Consensus 185 ~~~~l~e~~~li~~~~l~I~~Ds-g~~HlA~a-~~~p~i~l~g~~~ 228 (279)
T cd03789 185 GKTSLRELAALLARADLVVTNDS-GPMHLAAA-LGTPTVALFGPTD 228 (279)
T ss_pred CCCCHHHHHHHHHhCCEEEeeCC-HHHHHHHH-cCCCEEEEECCCC
Confidence 36799999999999999999975 55555543 3788888887653
No 54
>PRK05568 flavodoxin; Provisional
Probab=37.68 E-value=64 Score=28.33 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=35.5
Q ss_pred ceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEE
Q psy12840 305 KVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILI 363 (469)
Q Consensus 305 ~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlI 363 (469)
+.-|+|.|..++.+++. +.+.+.+++. |.++.+++.. +.... .+.++|+||
T Consensus 3 ~~~IvY~S~~GnT~~~a--~~i~~~~~~~-g~~v~~~~~~-~~~~~----~~~~~d~ii 53 (142)
T PRK05568 3 KINIIYWSGTGNTEAMA--NLIAEGAKEN-GAEVKLLNVS-EASVD----DVKGADVVA 53 (142)
T ss_pred eEEEEEECCCchHHHHH--HHHHHHHHHC-CCeEEEEECC-CCCHH----HHHhCCEEE
Confidence 46788999888767766 4466666655 8898888885 55543 356777765
No 55
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=37.45 E-value=3.8e+02 Score=28.48 Aligned_cols=93 Identities=9% Similarity=0.028 Sum_probs=58.3
Q ss_pred eEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech-hHHhhhhcCC--CCcEE
Q psy12840 306 VRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG-AGLTHLMFLP--DWAVV 382 (469)
Q Consensus 306 ~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG-AgLtn~lFmp--pga~V 382 (469)
.+|-+|. . ...--|.+|+.+.|++. |+++..+-. ...++ |+++-+.+|..-|.+.+ +|..-.-+|. =|.-.
T Consensus 163 ~~VNliG--~-~~~~~d~~ei~~lL~~~-Gl~v~~~~~-~~~t~-~ei~~~~~A~lnlv~~~~~~~~~A~~L~er~GiP~ 236 (415)
T cd01977 163 YTINYIG--D-YNIQGDTEVLQKYFERM-GIQVLSTFT-GNGTY-DDLRWMHRAKLNVVNCARSAGYIANELKKRYGIPR 236 (415)
T ss_pred CcEEEEc--c-CCCcccHHHHHHHHHHc-CCeEEEEEC-CCCCH-HHHHhcccCCEEEEEchhHHHHHHHHHHHHhCCCe
Confidence 4565663 2 23345667888899987 999965434 24555 45778888888666543 2433333333 25556
Q ss_pred EEEecCCC---chhHHHHHHHCCCe
Q psy12840 383 FELYNCED---EHCYKDLARLRGIK 404 (469)
Q Consensus 383 iEl~P~~~---~~~y~~lA~~~Gl~ 404 (469)
+.+-|.|. ..+++.||+..|+.
T Consensus 237 ~~~~~~G~~~t~~~l~~la~~~g~~ 261 (415)
T cd01977 237 LDVDGFGFEYCAESLRKIGAFFGIE 261 (415)
T ss_pred EEeccCCHHHHHHHHHHHHHHhCcc
Confidence 66656662 46889999998864
No 56
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=37.04 E-value=2e+02 Score=29.06 Aligned_cols=94 Identities=20% Similarity=0.157 Sum_probs=56.0
Q ss_pred EEEEEEeCCCCCcccCHHHHHHHHhcC-CCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechhHHhh---------hhcC
Q psy12840 307 RITLLSRDTQYRNILNEQELIEALSQE-PSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGAGLTH---------LMFL 376 (469)
Q Consensus 307 rvv~isR~~~~R~I~Ne~el~~~Lk~~-~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGAgLtn---------~lFm 376 (469)
+|++++|... .....+++.+.+.+. .+..+...+.. +..+.-+.+..+|+||-..-.|+.. .-++
T Consensus 152 ~V~I~~R~~~--~~~~a~~l~~~l~~~~~~~~~~~~d~~---~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l 226 (289)
T PRK12548 152 EITIFNIKDD--FYERAEQTAEKIKQEVPECIVNVYDLN---DTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVF 226 (289)
T ss_pred EEEEEeCCch--HHHHHHHHHHHHhhcCCCceeEEechh---hhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhc
Confidence 5788888541 012235566666543 23334333332 1222234667889999777666643 2247
Q ss_pred CCCcEEEEEecCCCchhHHHHHHHCCCeE
Q psy12840 377 PDWAVVFELYNCEDEHCYKDLARLRGIKY 405 (469)
Q Consensus 377 ppga~ViEl~P~~~~~~y~~lA~~~Gl~Y 405 (469)
+++..|+++.=.-..+-+-..|+..|.+.
T Consensus 227 ~~~~~v~D~vY~P~~T~ll~~A~~~G~~~ 255 (289)
T PRK12548 227 RKDLVVADTVYNPKKTKLLEDAEAAGCKT 255 (289)
T ss_pred CCCCEEEEecCCCCCCHHHHHHHHCCCee
Confidence 78889999962224578899999999754
No 57
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=36.74 E-value=2.2e+02 Score=31.40 Aligned_cols=98 Identities=12% Similarity=0.100 Sum_probs=68.3
Q ss_pred CceEEEEEEeCC-CCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech-hHHhhhhcCCC--C
Q psy12840 304 SKVRITLLSRDT-QYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG-AGLTHLMFLPD--W 379 (469)
Q Consensus 304 ~~~rvv~isR~~-~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG-AgLtn~lFmpp--g 379 (469)
.+++|-+|.=.. ..+.--|..|+...|++. |.++.++-+. ..+ -++++-+.+|++-|.+++ +|..=.-+|.. |
T Consensus 157 ~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~-Gi~vn~v~p~-g~s-~~di~~l~~A~~nivl~~~~g~~~A~~Lee~fG 233 (519)
T PRK02910 157 ARPSVNLLGPTALGFHHRDDLTELRRLLATL-GIDVNVVAPL-GAS-PADLKRLPAAWFNVVLYREIGESAARYLEREFG 233 (519)
T ss_pred CCCeEEEEecCccCCCChhHHHHHHHHHHHc-CCeEEEEeCC-CCC-HHHHHhcccCcEEEEeCHHHHHHHHHHHHHHhC
Confidence 456677775422 134556778899999988 9999887553 445 677888999999999887 46555555543 4
Q ss_pred cEEEEEecCCC---chhHHHHHHHCCCe
Q psy12840 380 AVVFELYNCED---EHCYKDLARLRGIK 404 (469)
Q Consensus 380 a~ViEl~P~~~---~~~y~~lA~~~Gl~ 404 (469)
.-.+...|.|- ..+-+.+|+..|+.
T Consensus 234 iP~i~~~PiG~~~T~~fL~~la~~~g~~ 261 (519)
T PRK02910 234 QPYVKTVPIGVGATARFIREVAELLNLD 261 (519)
T ss_pred CcccccccccHHHHHHHHHHHHHHhCCC
Confidence 44556678883 45788899988864
No 58
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=36.53 E-value=82 Score=27.51 Aligned_cols=80 Identities=19% Similarity=0.136 Sum_probs=57.6
Q ss_pred HHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechhHHhhhhcCC-CCcEEEEEecCCCchhHHHHHHHCC
Q psy12840 324 QELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGAGLTHLMFLP-DWAVVFELYNCEDEHCYKDLARLRG 402 (469)
Q Consensus 324 ~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGAgLtn~lFmp-pga~ViEl~P~~~~~~y~~lA~~~G 402 (469)
++.++.|++ |+++... +..+-.+-.+...++|++|+..+..++--++-. |+-.+|-..-.|....=-..|+-.|
T Consensus 9 ~~~~~~l~~--~~~v~~~---~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~a~~~g 83 (133)
T PF00389_consen 9 DEEIERLEE--GFEVEFC---DSPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNIDLEAAKERG 83 (133)
T ss_dssp HHHHHHHHH--TSEEEEE---SSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-HHHHHHTT
T ss_pred HHHHHHHHC--CceEEEe---CCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCcccHHHHhhCe
Confidence 567788877 6677654 367888889999999999998877676655522 8888888887775544466788889
Q ss_pred CeEEEE
Q psy12840 403 IKYITW 408 (469)
Q Consensus 403 l~Y~~~ 408 (469)
+.....
T Consensus 84 I~V~n~ 89 (133)
T PF00389_consen 84 IPVTNV 89 (133)
T ss_dssp SEEEE-
T ss_pred EEEEEe
Confidence 866543
No 59
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=33.47 E-value=1.7e+02 Score=28.98 Aligned_cols=61 Identities=23% Similarity=0.200 Sum_probs=44.9
Q ss_pred HHHHHHhcCCCcEEEEEEcCC---------C--CCHHHHHHHHccCCEEEEechhH-HhhhhcCCCCcEEEEE
Q psy12840 325 ELIEALSQEPSVKVKRVVYNR---------Q--MNFTKQLEKTYNSDILIGMHGAG-LTHLMFLPDWAVVFEL 385 (469)
Q Consensus 325 el~~~Lk~~~g~~v~vv~~~e---------~--lsf~eQi~l~~~adVlIG~HGAg-Ltn~lFmppga~ViEl 385 (469)
+++++|++.++..++++-..+ - .+-.+-.++|..||++||.=|-+ +.-++.+..-+.+|-.
T Consensus 206 ~~~~~l~~~~~~~~~v~g~~~~~~~~~ni~~~~~~~~~~~~~m~~ad~vIs~~G~~t~~Ea~~~g~P~l~ip~ 278 (318)
T PF13528_consen 206 DLIEALKALPDYQFIVFGPNAADPRPGNIHVRPFSTPDFAELMAAADLVISKGGYTTISEALALGKPALVIPR 278 (318)
T ss_pred HHHHHHHhCCCCeEEEEcCCcccccCCCEEEeecChHHHHHHHHhCCEEEECCCHHHHHHHHHcCCCEEEEeC
Confidence 788999888767777663321 0 12256788999999999999999 8888888655655544
No 60
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=33.30 E-value=1.6e+02 Score=27.46 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=44.5
Q ss_pred EEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechhHHhhh----hcCCCCcEE
Q psy12840 307 RITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGAGLTHL----MFLPDWAVV 382 (469)
Q Consensus 307 rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGAgLtn~----lFmppga~V 382 (469)
++++++|... ..+++.+.+++..+.++..++. .+..+..+.+.++|+||..-.+|..+. ....++.+|
T Consensus 54 ~V~l~~R~~~-----~~~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv 125 (194)
T cd01078 54 RVVLVGRDLE-----RAQKAADSLRARFGEGVGAVET---SDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVA 125 (194)
T ss_pred EEEEEcCCHH-----HHHHHHHHHHhhcCCcEEEeeC---CCHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeEE
Confidence 6777777532 2345555555333556655543 466666788899999999988888421 122346677
Q ss_pred EEEe
Q psy12840 383 FELY 386 (469)
Q Consensus 383 iEl~ 386 (469)
+.+.
T Consensus 126 ~D~~ 129 (194)
T cd01078 126 ADVN 129 (194)
T ss_pred EEcc
Confidence 7753
No 61
>PRK10431 N-acetylmuramoyl-l-alanine amidase II; Provisional
Probab=33.07 E-value=86 Score=34.10 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=46.0
Q ss_pred CceEEEEEEeCCC-------CCcccCHHH--------HHHHHhcCCCcEEEEEEcC-CCCCHHHHHHHHc--cCCEEEEe
Q psy12840 304 SKVRITLLSRDTQ-------YRNILNEQE--------LIEALSQEPSVKVKRVVYN-RQMNFTKQLEKTY--NSDILIGM 365 (469)
Q Consensus 304 ~~~rvv~isR~~~-------~R~I~Ne~e--------l~~~Lk~~~g~~v~vv~~~-e~lsf~eQi~l~~--~adVlIG~ 365 (469)
.++.+|+|+=+-. +..=+-|.+ |.+.|++.+|++|+...-+ ...++.|-+++.+ +||++|++
T Consensus 189 ~~~~vIvIDpGHGG~DpGA~g~~G~~EKdv~L~iA~~L~~~L~~~~g~~VvlTR~~D~~v~L~eR~~iAn~~~ADLFISI 268 (445)
T PRK10431 189 GDKVIIAIDAGHGGQDPGAIGPGGTREKNVTIAIARKLRTLLNDDPMFKGVLTRDGDYFISVMGRSDVARKQNANFLVSI 268 (445)
T ss_pred CCCeEEEEeCCCCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHcCCCEEEEE
Confidence 4556778887532 222245655 3344444457888655433 4688999988888 89999999
Q ss_pred chhHHhh
Q psy12840 366 HGAGLTH 372 (469)
Q Consensus 366 HGAgLtn 372 (469)
|--+..+
T Consensus 269 HaNa~~~ 275 (445)
T PRK10431 269 HADAAPN 275 (445)
T ss_pred ccCCCCC
Confidence 9877654
No 62
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=32.61 E-value=1.1e+02 Score=29.37 Aligned_cols=80 Identities=16% Similarity=0.218 Sum_probs=45.8
Q ss_pred eEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechhHHhhhhcCCCCcEEEEE
Q psy12840 306 VRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGAGLTHLMFLPDWAVVFEL 385 (469)
Q Consensus 306 ~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGAgLtn~lFmppga~ViEl 385 (469)
.+|+++.-... + +++.++.+.+...-.+. ++....++.|.+.+++.||++||+-+ |.+|+.-+ =|+.+|-|
T Consensus 138 ~~vvl~g~~~~-~----~~~~~~~~~~~~~~~~~--~~~~~~~l~e~~ali~~a~~~I~~Dt-g~~HlA~a-~~~p~v~l 208 (247)
T PF01075_consen 138 YRVVLLGGPEE-Q----EKEIADQIAAGLQNPVI--NLAGKTSLRELAALISRADLVIGNDT-GPMHLAAA-LGTPTVAL 208 (247)
T ss_dssp -EEEE--SSHH-H----HHHHHHHHHTTHTTTTE--EETTTS-HHHHHHHHHTSSEEEEESS-HHHHHHHH-TT--EEEE
T ss_pred ceEEEEccchH-H----HHHHHHHHHHhcccceE--eecCCCCHHHHHHHHhcCCEEEecCC-hHHHHHHH-HhCCEEEE
Confidence 35666644332 1 56666666543111122 22236899999999999999999986 45565554 26778888
Q ss_pred ecCCCchhH
Q psy12840 386 YNCEDEHCY 394 (469)
Q Consensus 386 ~P~~~~~~y 394 (469)
|.+.....|
T Consensus 209 fg~t~~~~~ 217 (247)
T PF01075_consen 209 FGPTNPERW 217 (247)
T ss_dssp ESSS-HHHH
T ss_pred ecCCCHHHh
Confidence 877544333
No 63
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=30.87 E-value=2.4e+02 Score=28.61 Aligned_cols=94 Identities=16% Similarity=0.111 Sum_probs=54.9
Q ss_pred EEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechhHHhh---------hhcCC
Q psy12840 307 RITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGAGLTH---------LMFLP 377 (469)
Q Consensus 307 rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGAgLtn---------~lFmp 377 (469)
+|++++|... ...+.+++.+.+....+..+.+.++. .. ....+.+.++||||-..-.|+.. .-+++
T Consensus 150 ~i~i~nRt~~--~~~ka~~la~~~~~~~~~~~~~~~~~-~~--~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~ 224 (288)
T PRK12749 150 EIKLFNRRDE--FFDKALAFAQRVNENTDCVVTVTDLA-DQ--QAFAEALASADILTNGTKVGMKPLENESLVNDISLLH 224 (288)
T ss_pred EEEEEeCCcc--HHHHHHHHHHHhhhccCceEEEechh-hh--hhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHHCC
Confidence 7888888642 11223556666644323444433331 11 11122456899998777666643 12466
Q ss_pred CCcEEEEEecCCCchhHHHHHHHCCCeE
Q psy12840 378 DWAVVFELYNCEDEHCYKDLARLRGIKY 405 (469)
Q Consensus 378 pga~ViEl~P~~~~~~y~~lA~~~Gl~Y 405 (469)
++..|+++.-.-..+.+-..|+..|.+.
T Consensus 225 ~~~~v~D~vY~P~~T~ll~~A~~~G~~~ 252 (288)
T PRK12749 225 PGLLVTECVYNPHMTKLLQQAQQAGCKT 252 (288)
T ss_pred CCCEEEEecCCCccCHHHHHHHHCCCeE
Confidence 7889998862224568888999999754
No 64
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=29.07 E-value=1.4e+02 Score=28.07 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=19.1
Q ss_pred CCHHHHHHHHc--cCCEEEEechhHHh
Q psy12840 347 MNFTKQLEKTY--NSDILIGMHGAGLT 371 (469)
Q Consensus 347 lsf~eQi~l~~--~adVlIG~HGAgLt 371 (469)
.++.|.+++.+ ++|++|++|--+..
T Consensus 70 ~~L~~R~~~An~~~adlfiSiH~Na~~ 96 (189)
T TIGR02883 70 EDLRKRVKLINESEADLFISIHLNAFP 96 (189)
T ss_pred CCHHHHHHHHHhcCCCEEEEEecCCCC
Confidence 36777777776 58999999987654
No 65
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=28.27 E-value=2.2e+02 Score=29.70 Aligned_cols=94 Identities=12% Similarity=0.079 Sum_probs=66.9
Q ss_pred CceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechhHHh-hhhcCCC--Cc
Q psy12840 304 SKVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGAGLT-HLMFLPD--WA 380 (469)
Q Consensus 304 ~~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGAgLt-n~lFmpp--ga 380 (469)
.+..|-+|....-.. -|..|+.+.|++. |+++..+-+. ..+ -|+++-+.+|++-|.++..+.. =.=+|.. |.
T Consensus 143 ~~~~VNiiG~~~~~~--~d~~el~~lL~~~-Gi~v~~~~~~-~~t-~~e~~~~~~A~lniv~~~~~~~~~a~~L~e~~gi 217 (398)
T PF00148_consen 143 KPRSVNIIGGSPLGP--GDLEELKRLLEEL-GIEVNAVFPG-GTT-LEEIRKAPEAALNIVLCPEGGPYAAEWLEERFGI 217 (398)
T ss_dssp SSSEEEEEEESTBTH--HHHHHHHHHHHHT-TEEEEEEEET-TBC-HHHHHHGGGSSEEEESSCCHHHHHHHHHHHHHT-
T ss_pred CCCceEEecCcCCCc--ccHHHHHHHHHHC-CCceEEEeCC-CCC-HHHHHhCCcCcEEEEeccchhhHHHHHHHHHhCC
Confidence 344777776653212 6888999999988 9998877553 455 4567788999999998888665 4445554 77
Q ss_pred EEEE-EecCCC---chhHHHHHHHCC
Q psy12840 381 VVFE-LYNCED---EHCYKDLARLRG 402 (469)
Q Consensus 381 ~ViE-l~P~~~---~~~y~~lA~~~G 402 (469)
-.+. -.|.|. ..+|+.+|+.+|
T Consensus 218 P~~~~~~p~G~~~t~~~l~~i~~~lg 243 (398)
T PF00148_consen 218 PYLYFPSPYGIEGTDAWLRAIAEALG 243 (398)
T ss_dssp EEEEEC-SBSHHHHHHHHHHHHHHHT
T ss_pred CeeeccccccHHHHHHHHHHHHHHhC
Confidence 7777 457773 569999999999
No 66
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=27.46 E-value=1.7e+02 Score=31.13 Aligned_cols=96 Identities=10% Similarity=0.097 Sum_probs=62.8
Q ss_pred ceEEEEEEeCCC-CCc-ccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech-hHHhhhhcC--CCC
Q psy12840 305 KVRITLLSRDTQ-YRN-ILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG-AGLTHLMFL--PDW 379 (469)
Q Consensus 305 ~~rvv~isR~~~-~R~-I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG-AgLtn~lFm--ppg 379 (469)
+..|-+|.-... .+. --|..|+.+.|++. |+++..+-.. ..++ +.++-+.+|..-|.++. +|+.-.-+| .=|
T Consensus 161 ~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~-Gi~v~~~~~~-~~~~-~ei~~~~~A~lniv~~~~~g~~~a~~Lee~~G 237 (426)
T cd01972 161 EDSVNIIGLWGGPERTEQEDVDEFKRLLNEL-GLRVNAIIAG-GCSV-EELERASEAAANVTLCLDLGYYLGAALEQRFG 237 (426)
T ss_pred CCCEEEEccCCCccccccccHHHHHHHHHHc-CCeEEEEeCC-CCCH-HHHHhcccCCEEEEEChhHHHHHHHHHHHHhC
Confidence 345656644321 111 36778999999988 9999877442 4554 55677899999888774 444333344 346
Q ss_pred cEEEEE-ecCCC---chhHHHHHHHCCC
Q psy12840 380 AVVFEL-YNCED---EHCYKDLARLRGI 403 (469)
Q Consensus 380 a~ViEl-~P~~~---~~~y~~lA~~~Gl 403 (469)
.-.+++ +|.|. ..+++.+|+..|+
T Consensus 238 iP~~~~~~P~G~~~T~~~l~~ia~~~g~ 265 (426)
T cd01972 238 VPEIKAPQPYGIEATDKWLREIAKVLGM 265 (426)
T ss_pred CCeEecCCccCHHHHHHHHHHHHHHhCC
Confidence 667766 57773 4588999998886
No 67
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=27.39 E-value=4.7e+02 Score=27.77 Aligned_cols=97 Identities=14% Similarity=0.117 Sum_probs=66.6
Q ss_pred ceEEEEEEeCC-CCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEec---hhHHhhhhcCCCCc
Q psy12840 305 KVRITLLSRDT-QYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMH---GAGLTHLMFLPDWA 380 (469)
Q Consensus 305 ~~rvv~isR~~-~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~H---GAgLtn~lFmppga 380 (469)
+.+|-+|.-.. ..+..-|..|+...|++. |+++..+-+. ..+ -|+++-+.+|++-|.++ |..++..|--.=|.
T Consensus 162 ~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~-Gl~v~~~~~~-~~~-~~~i~~~~~A~lniv~~~~~~~~~a~~L~~~~Gi 238 (430)
T cd01981 162 KPSVNLIGPSSLGFHNRHDCRELKRLLHTL-GIEVNVVIPE-GAS-VDDLNELPKAWFNIVPYREYGLSAALYLEEEFGM 238 (430)
T ss_pred CCcEEEEcCCCCCCCCcchHHHHHHHHHHc-CCeEEEEEcC-CCC-HHHHHhhhhCeEEEEecHHHHHHHHHHHHHHhCC
Confidence 34565664432 224456788999999988 9999876553 445 45667788888877765 45566666544465
Q ss_pred EEEEEecCCC---chhHHHHHHHCCCe
Q psy12840 381 VVFELYNCED---EHCYKDLARLRGIK 404 (469)
Q Consensus 381 ~ViEl~P~~~---~~~y~~lA~~~Gl~ 404 (469)
-.+...|.|. ..+.+.+++..|+.
T Consensus 239 P~~~~~p~G~~~t~~~l~~i~~~~g~~ 265 (430)
T cd01981 239 PSVKITPIGVVATARFLREIQELLGIQ 265 (430)
T ss_pred CeEeccCCChHHHHHHHHHHHHHhCCc
Confidence 5666688883 56899999999976
No 68
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=25.93 E-value=4.6e+02 Score=27.68 Aligned_cols=94 Identities=11% Similarity=0.035 Sum_probs=57.9
Q ss_pred ceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEec---hhHHhhhhcCCCCcE
Q psy12840 305 KVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMH---GAGLTHLMFLPDWAV 381 (469)
Q Consensus 305 ~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~H---GAgLtn~lFmppga~ 381 (469)
+..|-+|.- ....-|.+|+.+.|++. |+++..+-. ...+++| ++-+.+|.+-|.+. |..++..|=-.=|.-
T Consensus 158 ~~~VNiig~---~~~~~d~~el~~lL~~~-Gl~v~~~~~-~~~s~ee-i~~~~~A~lniv~~~~~~~~~a~~L~~~fGip 231 (410)
T cd01968 158 PYDINLIGE---FNVAGELWGVKPLLEKL-GIRVLASIT-GDSRVDE-IRRAHRAKLNVVQCSKSMIYLARKMEEKYGIP 231 (410)
T ss_pred CCcEEEECC---CCCcccHHHHHHHHHHc-CCeEEEEeC-CCCCHHH-HHhhhhCcEEEEEchhHHHHHHHHHHHHhCCC
Confidence 344555542 23345778999999988 999876544 2556554 55677787776543 223333331122555
Q ss_pred EEEEecCCC---chhHHHHHHHCCCe
Q psy12840 382 VFELYNCED---EHCYKDLARLRGIK 404 (469)
Q Consensus 382 ViEl~P~~~---~~~y~~lA~~~Gl~ 404 (469)
.+...|.|. ..+++.+|+..|..
T Consensus 232 ~~~~~p~G~~~t~~~l~~ia~~~g~~ 257 (410)
T cd01968 232 YIEVSFYGIRDTSKSLRNIAELLGDE 257 (410)
T ss_pred eEecCcCcHHHHHHHHHHHHHHhCCc
Confidence 556556663 56899999999863
No 69
>MTH00158 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=25.73 E-value=43 Score=22.78 Aligned_cols=13 Identities=38% Similarity=1.203 Sum_probs=10.0
Q ss_pred CccchhhHHHHHH
Q psy12840 8 PAMIPLQWFLFII 20 (469)
Q Consensus 8 ~~~~~~~~~~~~~ 20 (469)
|.|-|+.|.+.++
T Consensus 2 PQmsPm~W~~l~~ 14 (32)
T MTH00158 2 PQMSPMNWLILFI 14 (32)
T ss_pred CCcccHHHHHHHH
Confidence 7899999965543
No 70
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=25.71 E-value=6.4e+02 Score=27.10 Aligned_cols=93 Identities=6% Similarity=0.000 Sum_probs=60.4
Q ss_pred ceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechh-H--HhhhhcCCCCcE
Q psy12840 305 KVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGA-G--LTHLMFLPDWAV 381 (469)
Q Consensus 305 ~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGA-g--Ltn~lFmppga~ 381 (469)
+.+|-+|.= ....-|.+|+.+.|++. |+++..+-.. ..+ -|+++-+.+|..-|.+.+. + ++..|=-+=|.-
T Consensus 191 ~~~VNiig~---~~~~~d~~el~~lL~~~-Gl~v~~~~~~-~~t-~eei~~~~~A~lniv~~~~~~~~~A~~L~er~GiP 264 (443)
T TIGR01862 191 EYDVNIIGE---YNIGGDAWVMRIYLEEM-GIQVVATFTG-DGT-YDEIRLMHKAKLNLVHCARSANYIANELEERYGIP 264 (443)
T ss_pred CCeEEEEcc---CcCcccHHHHHHHHHHc-CCeEEEEECC-CCC-HHHHHhcccCCEEEEEChHHHHHHHHHHHHHhCCC
Confidence 345656642 22345778999999988 9998765442 444 5667778998887765542 2 344332223666
Q ss_pred EEEEecCCC---chhHHHHHHHCCC
Q psy12840 382 VFELYNCED---EHCYKDLARLRGI 403 (469)
Q Consensus 382 ViEl~P~~~---~~~y~~lA~~~Gl 403 (469)
.+.+.|.|- ..+++.||+..|+
T Consensus 265 ~~~~~p~G~~~t~~~l~~la~~~gi 289 (443)
T TIGR01862 265 WMKIDFFGFTYTAESLRAIAAFFGI 289 (443)
T ss_pred eEecccCCHHHHHHHHHHHHHHhCC
Confidence 777667662 4689999999885
No 71
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=25.22 E-value=1.2e+02 Score=23.80 Aligned_cols=34 Identities=15% Similarity=0.069 Sum_probs=22.9
Q ss_pred HHHHHHhcCCCcEEEEEEcCC--CCCHHHHHHHHcc
Q psy12840 325 ELIEALSQEPSVKVKRVVYNR--QMNFTKQLEKTYN 358 (469)
Q Consensus 325 el~~~Lk~~~g~~v~vv~~~e--~lsf~eQi~l~~~ 358 (469)
.-+.+|+-.++.-+-++|++| .+|+++|++++.+
T Consensus 5 qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ 40 (58)
T PF06858_consen 5 QAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKE 40 (58)
T ss_dssp HHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHH
T ss_pred HHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHH
Confidence 345667777677777888873 6899999998864
No 72
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=25.10 E-value=1.3e+02 Score=30.58 Aligned_cols=65 Identities=9% Similarity=0.154 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechhHHhhhhcCCCCcEEEEEecCCC
Q psy12840 323 EQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGAGLTHLMFLPDWAVVFELYNCED 390 (469)
Q Consensus 323 e~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGAgLtn~lFmppga~ViEl~P~~~ 390 (469)
|.++.+.+.+..+-. .++++...+|+.|-+++++.|+++||. =+|.+|+--+- |+-+|-||.+..
T Consensus 226 e~~~~~~i~~~~~~~-~~~~l~g~~sL~el~ali~~a~l~Vs~-DSGp~HlAaA~-g~p~v~Lfgpt~ 290 (344)
T TIGR02201 226 ELAMVNEIAQGCQTP-RVTSLAGKLTLPQLAALIDHARLFIGV-DSVPMHMAAAL-GTPLVALFGPSK 290 (344)
T ss_pred HHHHHHHHHhhCCCC-cccccCCCCCHHHHHHHHHhCCEEEec-CCHHHHHHHHc-CCCEEEEECCCC
Confidence 344555554321211 123333478999999999999999999 56777776653 778888886543
No 73
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=23.78 E-value=1.3e+02 Score=26.03 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=31.5
Q ss_pred EEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEE
Q psy12840 307 RITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILI 363 (469)
Q Consensus 307 rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlI 363 (469)
-|+|-|+.++.+++. +.+.+.+++. |+++.+.+.. +.+..+ +.++|.||
T Consensus 2 ~Iiy~S~tGnT~~~A--~~i~~~~~~~-g~~v~~~~~~-~~~~~~----l~~~d~ii 50 (140)
T TIGR01753 2 LIVYASMTGNTEEMA--NIIAEGLKEA-GAEVDLLEVA-DADAED----LLSYDAVL 50 (140)
T ss_pred EEEEECCCcHHHHHH--HHHHHHHHhc-CCeEEEEEcc-cCCHHH----HhcCCEEE
Confidence 478888877667766 3456666655 8888888774 555433 34566543
No 74
>PRK05569 flavodoxin; Provisional
Probab=23.55 E-value=1.5e+02 Score=25.98 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=33.2
Q ss_pred ceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEE
Q psy12840 305 KVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILI 363 (469)
Q Consensus 305 ~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlI 363 (469)
+.-|+|.|..++.+++. +++.+.+++. |.++.+.+.. ..+.. -+.++|.||
T Consensus 3 ki~iiY~S~tGnT~~iA--~~i~~~~~~~-g~~v~~~~~~-~~~~~----~~~~~d~ii 53 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLA--NTIADGAKEA-GAEVTIKHVA-DAKVE----DVLEADAVA 53 (141)
T ss_pred eEEEEEECCCCHHHHHH--HHHHHHHHhC-CCeEEEEECC-cCCHH----HHhhCCEEE
Confidence 46788999877656665 3455666555 7888877774 55543 456777654
No 75
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=23.14 E-value=2.6e+02 Score=23.28 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCCCccccCCCceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEE
Q psy12840 283 MEAFSKHILHRLKVRRLRRKNSKVRITLLSRDTQYRNILNEQELIEALSQEPSVKV 338 (469)
Q Consensus 283 ~~~Fr~~il~~l~i~~~~p~~~~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v 338 (469)
+++.++.|.++++++. ....+-|-++.++...++|++++..++...-+..+
T Consensus 23 y~~L~~ki~~kLkl~~-----e~i~LsYkde~s~~~v~l~d~dle~aws~~~~~~l 73 (80)
T cd06406 23 YATLLQKISSKLELPA-----EHITLSYKSEASGEDVILSDTNMEDVWSQAKDGCL 73 (80)
T ss_pred HHHHHHHHHHHhCCCc-----hhcEEEeccCCCCCccCcChHHHHHHHHhhcCCeE
Confidence 6788999999999963 34566677776666777899999999976544443
No 76
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=22.99 E-value=1.3e+02 Score=28.47 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=25.6
Q ss_pred ceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcC
Q psy12840 305 KVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYN 344 (469)
Q Consensus 305 ~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~ 344 (469)
+.-|+|-|+.++.+++. +++.+.+++..|.++++++..
T Consensus 2 kilIiY~S~~G~T~~lA--~~ia~g~~~~~g~ev~~~~v~ 39 (197)
T TIGR01755 2 KVLVLYYSMYGHIETMA--RAVAEGAREVDGAEVVVKRVP 39 (197)
T ss_pred eEEEEEeCCCCHHHHHH--HHHHHHHHhcCCCEEEEEecc
Confidence 45678888877656665 445566655448888877764
No 77
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=22.74 E-value=2.2e+02 Score=28.39 Aligned_cols=53 Identities=21% Similarity=0.334 Sum_probs=40.1
Q ss_pred HHHccCCEEEEechhHHhh--------hhcCCCCcEEEEEecCCCchhHHHHHHHCCCeEE
Q psy12840 354 EKTYNSDILIGMHGAGLTH--------LMFLPDWAVVFELYNCEDEHCYKDLARLRGIKYI 406 (469)
Q Consensus 354 ~l~~~adVlIG~HGAgLtn--------~lFmppga~ViEl~P~~~~~~y~~lA~~~Gl~Y~ 406 (469)
+.+.++||||....+|+.. .-++++++.|+++.-....+.+-..|+..|.+..
T Consensus 181 ~~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~~~~ 241 (278)
T PRK00258 181 EELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPTPFLAWAKAQGARTI 241 (278)
T ss_pred hccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCCHHHHHHHHCcCeec
Confidence 4567899999999999843 1346788999999643346788899999998653
No 78
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=22.20 E-value=1.6e+02 Score=26.03 Aligned_cols=53 Identities=19% Similarity=0.294 Sum_probs=33.9
Q ss_pred EEEEEEeCCCCCcccCHHHHHHHH----hcCCCcEEEEEEcCCCC-----------------CHHHHHHHHccCCEEE
Q psy12840 307 RITLLSRDTQYRNILNEQELIEAL----SQEPSVKVKRVVYNRQM-----------------NFTKQLEKTYNSDILI 363 (469)
Q Consensus 307 rvv~isR~~~~R~I~Ne~el~~~L----k~~~g~~v~vv~~~e~l-----------------sf~eQi~l~~~adVlI 363 (469)
||++|.=+ .|.--|-..+++.+ ++. |.++.++++. ++ .+.+-++.+.+||.+|
T Consensus 2 kilii~gS--~r~~~~t~~l~~~~~~~l~~~-g~e~~~i~l~-~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI 75 (152)
T PF03358_consen 2 KILIINGS--PRKNSNTRKLAEAVAEQLEEA-GAEVEVIDLA-DYPLPCCDGDFECPCYIPDDVQELYDKLKEADGII 75 (152)
T ss_dssp EEEEEESS--SSTTSHHHHHHHHHHHHHHHT-TEEEEEEECT-TSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEE
T ss_pred EEEEEECc--CCCCCHHHHHHHHHHHHHHHc-CCEEEEEecc-ccchhhcccccccccCCcHHHHHHHhceecCCeEE
Confidence 56666432 24445555555555 444 8999999986 43 2345588899999877
No 79
>PF02173 pKID: pKID domain; InterPro: IPR003102 The nuclear factor CREB activates transcription of target genes in part through direct interactions with the KIX domain of the coactivator CBP in a phosphorylation-dependent manner. CBP and P300 bind to the pKID (phosphorylated kinase-inducible-domain) domain of CREB [].; GO: 0005515 protein binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1KDX_B.
Probab=21.94 E-value=5 Score=29.05 Aligned_cols=15 Identities=53% Similarity=0.886 Sum_probs=12.3
Q ss_pred EEEeCCCCCcccCHH
Q psy12840 310 LLSRDTQYRNILNEQ 324 (469)
Q Consensus 310 ~isR~~~~R~I~Ne~ 324 (469)
+++|+.++|+|+|+-
T Consensus 15 iLsRRPSYRKIlndL 29 (41)
T PF02173_consen 15 ILSRRPSYRKILNDL 29 (41)
T ss_dssp HHTTSTHHHHHHHHH
T ss_pred HHhhCchHHHHHHHh
Confidence 677888899999873
No 80
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=21.89 E-value=1.6e+02 Score=31.04 Aligned_cols=71 Identities=13% Similarity=0.216 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCCCccccCCCceEEEEEEeCCCCCcccCHHHHHHHHhc-CCCcEEEEEEcCCCCCHHHHHHHHccCC
Q psy12840 282 LMEAFSKHILHRLKVRRLRRKNSKVRITLLSRDTQYRNILNEQELIEALSQ-EPSVKVKRVVYNRQMNFTKQLEKTYNSD 360 (469)
Q Consensus 282 l~~~Fr~~il~~l~i~~~~p~~~~~rvv~isR~~~~R~I~Ne~el~~~Lk~-~~g~~v~vv~~~e~lsf~eQi~l~~~ad 360 (469)
.+..++++.-. . ...+..|+|.|..++.+++. +.+.+.+++ ..|.+|.+++.. +.+..+.++.+.+||
T Consensus 234 ~~~~Y~~~~~~-------~-~~~kv~IvY~S~~GnTe~mA--~~ia~g~~~~~~g~~v~~~~~~-~~~~~~i~~~~~~~d 302 (394)
T PRK11921 234 IVEKYLEWAAN-------Y-QENQVTILYDTMWNSTRRMA--EAIAEGIKKANKDVTVKLYNSA-KSDKNDIITEVFKSK 302 (394)
T ss_pred HHHHHHHHhhc-------C-CcCcEEEEEECCchHHHHHH--HHHHHHHhhcCCCCeEEEEECC-CCCHHHHHHHHHhCC
Confidence 55666665521 1 24678999999988756655 335566652 238899888884 778888887777777
Q ss_pred EEE
Q psy12840 361 ILI 363 (469)
Q Consensus 361 VlI 363 (469)
.||
T Consensus 303 ~ii 305 (394)
T PRK11921 303 AIL 305 (394)
T ss_pred EEE
Confidence 654
No 81
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=21.42 E-value=1.5e+02 Score=29.59 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=40.3
Q ss_pred EEEEEEeCC-----CCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccC
Q psy12840 307 RITLLSRDT-----QYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNS 359 (469)
Q Consensus 307 rvv~isR~~-----~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~a 359 (469)
-|+|++|.+ ....|.|.+.|.+..+++ |++|+.|+ ..+|+|-++.+.++
T Consensus 173 LiaivD~N~~QldG~t~~i~~~~pL~~k~eAF-Gw~V~evd---G~d~~~i~~a~~~~ 226 (243)
T COG3959 173 LIAIVDRNKLQLDGETEEIMPKEPLADKWEAF-GWEVIEVD---GHDIEEIVEALEKA 226 (243)
T ss_pred EEEEEecCCcccCCchhhccCcchhHHHHHhc-CceEEEEc---CcCHHHHHHHHHhh
Confidence 567999975 268999999999999998 99998885 46888888877665
No 82
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=21.12 E-value=1.7e+02 Score=27.58 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=35.0
Q ss_pred ceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCC----------------HHHHHHHHccCCEEE
Q psy12840 305 KVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMN----------------FTKQLEKTYNSDILI 363 (469)
Q Consensus 305 ~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~ls----------------f~eQi~l~~~adVlI 363 (469)
+.-|+|-|..++.+++. +++.+.+++..|.++.+++..+..+ +.+ ++.+.+||.||
T Consensus 3 kilIvy~S~~G~T~~lA--~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~aD~ii 74 (200)
T PRK03767 3 KVLVLYYSMYGHIETMA--EAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVAT-PDELADYDAII 74 (200)
T ss_pred eEEEEEcCCCCHHHHHH--HHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccC-HHHHHhCCEEE
Confidence 45677778766556665 3466666652488888887742222 111 67788888766
No 83
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=20.85 E-value=2.1e+02 Score=28.85 Aligned_cols=48 Identities=10% Similarity=0.146 Sum_probs=36.7
Q ss_pred EcCCCCCHHHHHHHHccCCEEEEechhHHhhhhcCCCCcEEEEEecCCCc
Q psy12840 342 VYNRQMNFTKQLEKTYNSDILIGMHGAGLTHLMFLPDWAVVFELYNCEDE 391 (469)
Q Consensus 342 ~~~e~lsf~eQi~l~~~adVlIG~HGAgLtn~lFmppga~ViEl~P~~~~ 391 (469)
++...+|+.|-+.++++||.+||.=. |..|+--+- |+-+|-||.+..+
T Consensus 235 ~l~g~~sL~el~ali~~a~l~I~~DS-Gp~HlAaA~-~~P~i~lfG~t~p 282 (334)
T TIGR02195 235 NLAGETSLDEAVDLIALAKAVVTNDS-GLMHVAAAL-NRPLVALYGSTSP 282 (334)
T ss_pred cCCCCCCHHHHHHHHHhCCEEEeeCC-HHHHHHHHc-CCCEEEEECCCCh
Confidence 34347899999999999999999875 555666543 7778888876543
No 84
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=20.59 E-value=1.1e+02 Score=29.77 Aligned_cols=79 Identities=22% Similarity=0.341 Sum_probs=51.3
Q ss_pred HHHHHhcCCC-cEEEEEEcCCCCC------HHHHHHHHccCCEEEEechhHHhhhhcCCCCcEEEEEecCCCchhHH--H
Q psy12840 326 LIEALSQEPS-VKVKRVVYNRQMN------FTKQLEKTYNSDILIGMHGAGLTHLMFLPDWAVVFELYNCEDEHCYK--D 396 (469)
Q Consensus 326 l~~~Lk~~~g-~~v~vv~~~e~ls------f~eQi~l~~~adVlIG~HGAgLtn~lFmppga~ViEl~P~~~~~~y~--~ 396 (469)
+-+++...+. -++.++ ++ +++ +++-++.-.++|++|++--.|=||++|.++ .-+++- ++...+++ .
T Consensus 76 i~aa~~~~~~p~~v~vv-ma-DLPLl~~~~i~~~~~~~~d~dvviaP~~gGGTn~L~~r~--~~~~~~-y~g~SF~~Hl~ 150 (210)
T COG1920 76 INAALDEIPLPSEVIVV-MA-DLPLLSPEHIERALSAAKDADVVIAPGRGGGTNVLFARK--SAFRPR-YGGVSFLRHLE 150 (210)
T ss_pred HHHHHhhCCCCcceEEE-ec-ccccCCHHHHHHHHHhcCCCcEEEecCCCCceEEEEEec--cccccc-ccCccHHHHHH
Confidence 4444444332 345544 43 454 566788888999999999999999999987 222221 12223333 4
Q ss_pred HHHHCCCeEEEEe
Q psy12840 397 LARLRGIKYITWE 409 (469)
Q Consensus 397 lA~~~Gl~Y~~~~ 409 (469)
.|+-+|+.+..+.
T Consensus 151 ~Ark~G~~~~~~d 163 (210)
T COG1920 151 EARKRGLVVLTYD 163 (210)
T ss_pred HHHHcCCEEEEec
Confidence 7899999988863
No 85
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=20.53 E-value=9.5e+02 Score=26.01 Aligned_cols=93 Identities=11% Similarity=0.093 Sum_probs=59.8
Q ss_pred eEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech--hH-HhhhhcCCCCcEE
Q psy12840 306 VRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG--AG-LTHLMFLPDWAVV 382 (469)
Q Consensus 306 ~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG--Ag-Ltn~lFmppga~V 382 (469)
..|-+|. .....-|..||.+.|++. |+++..+-. ...++ |+++-+.+|..-|.+.+ ++ ++..|=-+=|.-.
T Consensus 202 ~~VNiiG---~~~~~gd~~el~~lL~~~-Gi~v~~~~~-g~~t~-~ei~~~~~A~lnlv~~~~~~~~~A~~Leer~GiP~ 275 (461)
T TIGR01860 202 YTINVIG---DYNIQGDTQVLQKYWDKM-GIQVIAHFT-GNGTY-DDLRCMHRAQLNVVNCARSAGYIANELKKRYGIPR 275 (461)
T ss_pred CcEEEEC---CCCCcccHHHHHHHHHHc-CCcEEEEeC-CCCCH-HHHHhcccCcEEEEECchHHHHHHHHHHHHhCCCe
Confidence 3555663 223445678899999988 999875433 24565 45777899998665443 22 4444433346666
Q ss_pred EEEecCCC---chhHHHHHHHCCCe
Q psy12840 383 FELYNCED---EHCYKDLARLRGIK 404 (469)
Q Consensus 383 iEl~P~~~---~~~y~~lA~~~Gl~ 404 (469)
+++.|.|- ..+.+.+|+..|+.
T Consensus 276 ~~~~p~Gi~~T~~~L~~la~~~g~~ 300 (461)
T TIGR01860 276 LDVDTWGFNYMAEALRKIGAFFGIE 300 (461)
T ss_pred ecCCcCCHHHHHHHHHHHHHHhCCc
Confidence 77767773 45889999998864
No 86
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=20.34 E-value=1e+03 Score=25.75 Aligned_cols=93 Identities=8% Similarity=-0.011 Sum_probs=59.6
Q ss_pred eEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEec---hhHHhhhhcCCCCcEE
Q psy12840 306 VRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMH---GAGLTHLMFLPDWAVV 382 (469)
Q Consensus 306 ~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~H---GAgLtn~lFmppga~V 382 (469)
..|-+|. . ...--+.+|+.+.|++. |+++..+-.. ..+ -++++-+.+|+.-|.+. |..++..|=-+=|.-.
T Consensus 200 ~~VNiiG--~-~~~~gd~~el~~lL~~~-Gl~v~~~~~g-~~s-~~ei~~~~~A~lniv~~~~~~~~~A~~Le~~~GiP~ 273 (457)
T TIGR01284 200 YDVNLIG--E-YNIQGDLWVLKKYFERM-GIQVLSTFTG-NGC-YDELRWMHRAKLNVVRCARSANYIANELEERYGIPR 273 (457)
T ss_pred CeEEEEc--c-CCchhhHHHHHHHHHHc-CCeEEEEECC-CCC-HHHHHhccccCEEEEEChHHHHHHHHHHHHHhCCCe
Confidence 4565663 1 22234567788888887 9999754342 444 46677788888865543 3335555543446767
Q ss_pred EEEecCCC---chhHHHHHHHCCCe
Q psy12840 383 FELYNCED---EHCYKDLARLRGIK 404 (469)
Q Consensus 383 iEl~P~~~---~~~y~~lA~~~Gl~ 404 (469)
+++-|.|- ..+.+.+|+..|+.
T Consensus 274 ~~~~~~G~~~T~~~l~~ia~~~g~~ 298 (457)
T TIGR01284 274 LDIDFFGFEYCAKNLRKIGEFFGIE 298 (457)
T ss_pred EecccCCHHHHHHHHHHHHHHhCCc
Confidence 77766663 46889999999964
No 87
>PRK09479 glpX fructose 1,6-bisphosphatase II; Reviewed
Probab=20.33 E-value=3.2e+02 Score=28.51 Aligned_cols=55 Identities=25% Similarity=0.460 Sum_probs=43.0
Q ss_pred CCceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHH---ccCCEEEEechh
Q psy12840 303 NSKVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKT---YNSDILIGMHGA 368 (469)
Q Consensus 303 ~~~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~---~~adVlIG~HGA 368 (469)
.+...|++++|..- +++++.+++. |.+|+.++ +=.+.--+... +..|+++|.=||
T Consensus 156 v~dltV~vLdRpRH-------~~lI~eiR~~-Gari~Li~---DGDVa~ai~~~~~~s~vD~~~GiGGa 213 (319)
T PRK09479 156 VSDLTVVVLDRPRH-------EELIAEIREA-GARVKLIS---DGDVAGAIATAFPDTGVDILMGIGGA 213 (319)
T ss_pred hhHeEEEEEcCchH-------HHHHHHHHHc-CCeEEEec---cccHHHHHHHhcCCCCeeEEEEcCcC
Confidence 35678999999643 7899999998 99998874 45666666666 677999998886
No 88
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.17 E-value=3.2e+02 Score=26.52 Aligned_cols=61 Identities=13% Similarity=0.086 Sum_probs=34.3
Q ss_pred CceEEEEEEeCCCCCcccCHHHHHHHHhcC---CCcEEEEEEcC----------------CCCCHHHHHHHHccCCEEEE
Q psy12840 304 SKVRITLLSRDTQYRNILNEQELIEALSQE---PSVKVKRVVYN----------------RQMNFTKQLEKTYNSDILIG 364 (469)
Q Consensus 304 ~~~rvv~isR~~~~R~I~Ne~el~~~Lk~~---~g~~v~vv~~~----------------e~lsf~eQi~l~~~adVlIG 364 (469)
.+.+++++.|-...+ |.+.+++++++. +.+++.++--+ ...+..+-.+++++||++|.
T Consensus 196 ~~~~i~~~G~~~~~k---~~~~~i~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ 272 (364)
T cd03814 196 DRPVLLYVGRLAPEK---NLEALLDADLPLRRRPPVRLVIVGDGPARARLEARYPNVHFLGFLDGEELAAAYASADVFVF 272 (364)
T ss_pred CCeEEEEEecccccc---CHHHHHHHHHHhhhcCCceEEEEeCCchHHHHhccCCcEEEEeccCHHHHHHHHHhCCEEEE
Confidence 356788888854333 444455544432 23344333211 12356677788899998887
Q ss_pred ech
Q psy12840 365 MHG 367 (469)
Q Consensus 365 ~HG 367 (469)
+.+
T Consensus 273 ~s~ 275 (364)
T cd03814 273 PSR 275 (364)
T ss_pred Ccc
Confidence 654
No 89
>PRK07308 flavodoxin; Validated
Probab=20.16 E-value=1.7e+02 Score=26.01 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=27.1
Q ss_pred ceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCC
Q psy12840 305 KVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMN 348 (469)
Q Consensus 305 ~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~ls 348 (469)
+..|+|-|+.++.+++.+ .+.+.|++. |.++.+.+.. +.+
T Consensus 3 ~~~IvY~S~tGnTe~iA~--~ia~~l~~~-g~~~~~~~~~-~~~ 42 (146)
T PRK07308 3 LAKIVYASMTGNTEEIAD--IVADKLREL-GHDVDVDECT-TVD 42 (146)
T ss_pred eEEEEEECCCchHHHHHH--HHHHHHHhC-CCceEEEecc-cCC
Confidence 468899999887777763 355666655 7777776663 444
Done!