Query psy12840
Match_columns 469
No_of_seqs 261 out of 730
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 21:09:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12840.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12840hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tnl_A Shikimate dehydrogenase 81.1 6.8 0.00023 38.9 9.8 94 307-405 180-282 (315)
2 4a5o_A Bifunctional protein fo 80.4 3.9 0.00013 40.3 7.6 81 290-386 151-233 (286)
3 3p2o_A Bifunctional protein fo 78.6 5.2 0.00018 39.4 7.9 82 289-386 149-232 (285)
4 3l07_A Bifunctional protein fo 76.6 6.3 0.00022 38.8 7.8 82 289-386 150-233 (285)
5 4a26_A Putative C-1-tetrahydro 75.3 4.9 0.00017 39.8 6.7 83 290-386 155-239 (300)
6 1a4i_A Methylenetetrahydrofola 73.5 4 0.00014 40.5 5.5 83 289-386 154-237 (301)
7 1b0a_A Protein (fold bifunctio 72.4 7.3 0.00025 38.4 7.0 83 289-386 148-231 (288)
8 4b4u_A Bifunctional protein fo 72.0 15 0.00051 36.5 9.2 82 289-386 168-251 (303)
9 3t4e_A Quinate/shikimate dehyd 68.5 20 0.0007 35.3 9.5 94 307-405 174-276 (312)
10 2c2x_A Methylenetetrahydrofola 60.0 13 0.00043 36.5 6.0 84 289-386 147-232 (281)
11 3ngx_A Bifunctional protein fo 59.0 13 0.00045 36.3 5.9 71 306-386 151-222 (276)
12 3czx_A Putative N-acetylmuramo 57.9 6.6 0.00023 35.7 3.3 39 334-372 45-84 (182)
13 3fni_A Putative diflavin flavo 57.8 9 0.00031 33.6 4.1 56 304-363 5-61 (159)
14 1psw_A ADP-heptose LPS heptosy 52.4 66 0.0023 30.7 9.8 43 345-389 248-290 (348)
15 3hly_A Flavodoxin-like domain; 51.6 13 0.00046 32.4 4.2 55 305-363 2-56 (161)
16 1jwq_A N-acetylmuramoyl-L-alan 51.1 20 0.00067 32.5 5.3 46 326-371 37-85 (179)
17 1edz_A 5,10-methylenetetrahydr 48.6 28 0.00095 34.7 6.4 78 305-388 177-277 (320)
18 3tov_A Glycosyl transferase fa 46.6 1.3E+02 0.0044 29.4 11.0 43 346-390 249-291 (349)
19 2ljs_A Trypsin inhibitor 3; be 40.8 4.3 0.00015 26.0 -0.6 16 50-65 4-19 (30)
20 2amj_A Modulator of drug activ 39.8 38 0.0013 30.8 5.4 38 326-364 39-76 (204)
21 3don_A Shikimate dehydrogenase 39.8 58 0.002 31.4 7.0 57 348-405 165-229 (277)
22 3ne8_A N-acetylmuramoyl-L-alan 34.3 40 0.0014 31.8 4.8 45 327-371 40-87 (234)
23 3rpe_A MDAB, modulator of drug 34.1 42 0.0014 31.4 4.8 39 325-364 51-89 (218)
24 2ohh_A Type A flavoprotein FPR 32.6 45 0.0015 32.9 5.1 56 304-363 257-312 (404)
25 3o8q_A Shikimate 5-dehydrogena 29.7 40 0.0014 32.6 4.0 118 307-449 152-277 (281)
26 2fz5_A Flavodoxin; alpha/beta 28.7 41 0.0014 27.5 3.4 49 307-363 3-51 (137)
27 2q9u_A A-type flavoprotein; fl 28.2 43 0.0015 33.3 4.1 56 304-363 257-312 (414)
28 2gt1_A Lipopolysaccharide hept 28.0 93 0.0032 29.5 6.3 43 346-390 241-283 (326)
29 2bfw_A GLGA glycogen synthase; 27.6 2.3E+02 0.0079 24.0 8.4 34 290-331 27-60 (200)
30 2egg_A AROE, shikimate 5-dehyd 27.2 1.4E+02 0.0048 28.7 7.5 54 353-406 199-260 (297)
31 2f9f_A First mannosyl transfer 27.0 1.1E+02 0.0039 26.0 6.2 34 304-340 22-55 (177)
32 2ark_A Flavodoxin; FMN, struct 24.9 52 0.0018 29.1 3.6 52 305-363 6-57 (188)
33 1e5d_A Rubredoxin\:oxygen oxid 24.6 65 0.0022 31.7 4.6 61 304-368 253-316 (402)
34 3f6r_A Flavodoxin; FMN binding 24.6 38 0.0013 28.5 2.5 56 305-368 3-62 (148)
35 3b6i_A Flavoprotein WRBA; flav 24.3 40 0.0014 29.6 2.7 57 305-363 3-73 (198)
36 3jyo_A Quinate/shikimate dehyd 23.9 2E+02 0.0068 27.5 7.8 88 307-405 153-248 (283)
37 1ydg_A Trp repressor binding p 22.8 28 0.00096 31.2 1.4 55 305-363 8-83 (211)
38 3fbt_A Chorismate mutase and s 21.8 2.8E+02 0.0097 26.5 8.5 90 358-455 178-275 (282)
39 2q62_A ARSH; alpha/beta, flavo 21.7 1.5E+02 0.0052 27.8 6.3 56 305-364 34-104 (247)
40 3qay_A Endolysin; amidase A/B 21.0 1E+02 0.0036 27.5 4.8 23 348-370 65-89 (180)
41 2a5l_A Trp repressor binding p 20.9 39 0.0013 29.7 1.9 55 305-363 7-76 (200)
42 5nul_A Flavodoxin; electron tr 20.9 61 0.0021 26.8 3.0 49 307-363 2-50 (138)
No 1
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=81.12 E-value=6.8 Score=38.86 Aligned_cols=94 Identities=14% Similarity=0.192 Sum_probs=63.1
Q ss_pred EEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechhHHhh---------hhcCC
Q psy12840 307 RITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGAGLTH---------LMFLP 377 (469)
Q Consensus 307 rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGAgLtn---------~lFmp 377 (469)
+|++++|... .....+++.+.+.+..++++.++++. + ..+--+.+.++||||..-.+|+.. .-+++
T Consensus 180 ~V~i~nR~~~--~~~~a~~la~~~~~~~~~~~~~~~~~-~--~~~l~~~l~~aDiIINaTp~Gm~~~~~~~p~~~~~~l~ 254 (315)
T 3tnl_A 180 EISIFNRKDD--FYANAEKTVEKINSKTDCKAQLFDIE-D--HEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLR 254 (315)
T ss_dssp EEEEEECSST--THHHHHHHHHHHHHHSSCEEEEEETT-C--HHHHHHHHHTCSEEEECSSTTSTTSTTCCSCCCGGGCC
T ss_pred EEEEEECCCc--hHHHHHHHHHHhhhhcCCceEEeccc-h--HHHHHhhhcCCCEEEECccCCCCCCCCCCCCCcHHHcC
Confidence 6778888632 23445667777765446777777663 2 233335678999999888888652 12467
Q ss_pred CCcEEEEEecCCCchhHHHHHHHCCCeE
Q psy12840 378 DWAVVFELYNCEDEHCYKDLARLRGIKY 405 (469)
Q Consensus 378 pga~ViEl~P~~~~~~y~~lA~~~Gl~Y 405 (469)
++.+|+++.=.-..+.+-..|+..|.+.
T Consensus 255 ~~~~V~DlvY~P~~T~ll~~A~~~G~~~ 282 (315)
T 3tnl_A 255 PELIVSDVVYKPTKTRLLEIAEEQGCQT 282 (315)
T ss_dssp TTCEEEESCCSSSSCHHHHHHHHTTCEE
T ss_pred CCCEEEEeccCCCCCHHHHHHHHCCCeE
Confidence 8899999863224578888999999854
No 2
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=80.41 E-value=3.9 Score=40.31 Aligned_cols=81 Identities=11% Similarity=0.110 Sum_probs=57.0
Q ss_pred HHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechh
Q psy12840 290 ILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGA 368 (469)
Q Consensus 290 il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGA 368 (469)
++++++++- ..-+++++.|++. .| -+...|... |..|.++.- .+.++. +.+++|||+|+.-|+
T Consensus 151 lL~~~~i~l-----~Gk~vvVvGrs~iVG~------plA~lL~~~-gAtVtv~hs-~T~~L~---~~~~~ADIVI~Avg~ 214 (286)
T 4a5o_A 151 LLASTGADL-----YGMDAVVVGASNIVGR------PMALELLLG-GCTVTVTHR-FTRDLA---DHVSRADLVVVAAGK 214 (286)
T ss_dssp HHHHTTCCC-----TTCEEEEECTTSTTHH------HHHHHHHHT-TCEEEEECT-TCSCHH---HHHHTCSEEEECCCC
T ss_pred HHHHhCCCC-----CCCEEEEECCCchhHH------HHHHHHHHC-CCeEEEEeC-CCcCHH---HHhccCCEEEECCCC
Confidence 567778753 2348899988652 22 255555555 889887754 244555 457899999999987
Q ss_pred H-HhhhhcCCCCcEEEEEe
Q psy12840 369 G-LTHLMFLPDWAVVFELY 386 (469)
Q Consensus 369 g-Ltn~lFmppga~ViEl~ 386 (469)
. +...=|.+||++||-+-
T Consensus 215 p~~I~~~~vk~GavVIDvg 233 (286)
T 4a5o_A 215 PGLVKGEWIKEGAIVIDVG 233 (286)
T ss_dssp TTCBCGGGSCTTCEEEECC
T ss_pred CCCCCHHHcCCCeEEEEec
Confidence 5 65666779999999985
No 3
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=78.58 E-value=5.2 Score=39.38 Aligned_cols=82 Identities=12% Similarity=0.150 Sum_probs=57.1
Q ss_pred HHHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech
Q psy12840 289 HILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG 367 (469)
Q Consensus 289 ~il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG 367 (469)
.++++++++- ..-+++++.|++. .| -+...|.+. |..|.++.-. +..+. +.+++|||+|+.-|
T Consensus 149 ~lL~~~~i~l-----~Gk~vvVvGrs~iVG~------p~A~lL~~~-gAtVtv~h~~-t~~L~---~~~~~ADIVI~Avg 212 (285)
T 3p2o_A 149 KLLKAYEIDL-----EGKDAVIIGASNIVGR------PMATMLLNA-GATVSVCHIK-TKDLS---LYTRQADLIIVAAG 212 (285)
T ss_dssp HHHHHTTCCC-----TTCEEEEECCCTTTHH------HHHHHHHHT-TCEEEEECTT-CSCHH---HHHTTCSEEEECSS
T ss_pred HHHHHhCCCC-----CCCEEEEECCCchHHH------HHHHHHHHC-CCeEEEEeCC-chhHH---HHhhcCCEEEECCC
Confidence 4566777753 3348889988652 22 255556555 8888877542 44444 46889999999998
Q ss_pred hH-HhhhhcCCCCcEEEEEe
Q psy12840 368 AG-LTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 Ag-Ltn~lFmppga~ViEl~ 386 (469)
+. +...=|.+||++||-+-
T Consensus 213 ~p~~I~~~~vk~GavVIDVg 232 (285)
T 3p2o_A 213 CVNLLRSDMVKEGVIVVDVG 232 (285)
T ss_dssp CTTCBCGGGSCTTEEEEECC
T ss_pred CCCcCCHHHcCCCeEEEEec
Confidence 75 55566779999999985
No 4
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=76.64 E-value=6.3 Score=38.77 Aligned_cols=82 Identities=15% Similarity=0.167 Sum_probs=56.0
Q ss_pred HHHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech
Q psy12840 289 HILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG 367 (469)
Q Consensus 289 ~il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG 367 (469)
.++++++++- ..-++++|.|++. .| -+...|... |..|.+..- .+..+. +.+++|||+|+.-|
T Consensus 150 ~lL~~~~i~l-----~Gk~vvVIG~s~iVG~------p~A~lL~~~-gAtVtv~hs-~t~~L~---~~~~~ADIVI~Avg 213 (285)
T 3l07_A 150 TMLREYGIKT-----EGAYAVVVGASNVVGK------PVSQLLLNA-KATVTTCHR-FTTDLK---SHTTKADILIVAVG 213 (285)
T ss_dssp HHHHHTTCCC-----TTCEEEEECCCTTTHH------HHHHHHHHT-TCEEEEECT-TCSSHH---HHHTTCSEEEECCC
T ss_pred HHHHHhCCCC-----CCCEEEEECCCchhHH------HHHHHHHHC-CCeEEEEeC-CchhHH---HhcccCCEEEECCC
Confidence 3566777753 2347889988652 22 255555555 888877643 244444 46889999999988
Q ss_pred hH-HhhhhcCCCCcEEEEEe
Q psy12840 368 AG-LTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 Ag-Ltn~lFmppga~ViEl~ 386 (469)
+. +...=|.+||++||.+-
T Consensus 214 ~p~~I~~~~vk~GavVIDvg 233 (285)
T 3l07_A 214 KPNFITADMVKEGAVVIDVG 233 (285)
T ss_dssp CTTCBCGGGSCTTCEEEECC
T ss_pred CCCCCCHHHcCCCcEEEEec
Confidence 75 55555679999999985
No 5
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=75.31 E-value=4.9 Score=39.85 Aligned_cols=83 Identities=18% Similarity=0.191 Sum_probs=55.7
Q ss_pred HHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechh
Q psy12840 290 ILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGA 368 (469)
Q Consensus 290 il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGA 368 (469)
++++++++- ..-++++|.|++. .| -+...|.+. |..|.++.-. +.++. ..+.+++|||||+.-|.
T Consensus 155 lL~~~~i~l-----~Gk~vvVIG~s~iVG~------p~A~lL~~~-gAtVtv~~~~-T~~l~-l~~~~~~ADIVI~Avg~ 220 (300)
T 4a26_A 155 LLKRCGIEM-----AGKRAVVLGRSNIVGA------PVAALLMKE-NATVTIVHSG-TSTED-MIDYLRTADIVIAAMGQ 220 (300)
T ss_dssp HHHHHTCCC-----TTCEEEEECCCTTTHH------HHHHHHHHT-TCEEEEECTT-SCHHH-HHHHHHTCSEEEECSCC
T ss_pred HHHHcCCCC-----CCCEEEEECCCchHHH------HHHHHHHHC-CCeEEEEeCC-CCCch-hhhhhccCCEEEECCCC
Confidence 566677753 2348889988652 22 245555555 8888877431 33232 01679999999999987
Q ss_pred H-HhhhhcCCCCcEEEEEe
Q psy12840 369 G-LTHLMFLPDWAVVFELY 386 (469)
Q Consensus 369 g-Ltn~lFmppga~ViEl~ 386 (469)
. +...=|.+||++||.+-
T Consensus 221 p~~I~~~~vk~GavVIDvg 239 (300)
T 4a26_A 221 PGYVKGEWIKEGAAVVDVG 239 (300)
T ss_dssp TTCBCGGGSCTTCEEEECC
T ss_pred CCCCcHHhcCCCcEEEEEe
Confidence 5 55556789999999985
No 6
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=73.54 E-value=4 Score=40.51 Aligned_cols=83 Identities=13% Similarity=0.146 Sum_probs=55.8
Q ss_pred HHHHhcCCCccccCCCceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechh
Q psy12840 289 HILHRLKVRRLRRKNSKVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGA 368 (469)
Q Consensus 289 ~il~~l~i~~~~p~~~~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGA 368 (469)
.++++++++- ..-++++|.|+.. +- .-+...|... |..|.++.-. ... .-+.+++|||+|+.-|.
T Consensus 154 ~ll~~~~i~l-----~gk~vvVIG~s~i----VG-~p~A~lL~~~-gAtVtv~hs~-t~~---L~~~~~~ADIVI~Avg~ 218 (301)
T 1a4i_A 154 ELIKETGVPI-----AGRHAVVVGRSKI----VG-APMHDLLLWN-NATVTTCHSK-TAH---LDEEVNKGDILVVATGQ 218 (301)
T ss_dssp HHHHTTTCCC-----TTCEEEEECCCTT----TH-HHHHHHHHHT-TCEEEEECTT-CSS---HHHHHTTCSEEEECCCC
T ss_pred HHHHHcCCCC-----CCCEEEEECCCch----HH-HHHHHHHHhC-CCeEEEEECC-ccc---HHHHhccCCEEEECCCC
Confidence 4567778753 3348899988642 11 1144445555 8888877432 333 34567899999999998
Q ss_pred H-HhhhhcCCCCcEEEEEe
Q psy12840 369 G-LTHLMFLPDWAVVFELY 386 (469)
Q Consensus 369 g-Ltn~lFmppga~ViEl~ 386 (469)
. +...=|.+||++||-+-
T Consensus 219 p~~I~~~~vk~GavVIDVg 237 (301)
T 1a4i_A 219 PEMVKGEWIKPGAIVIDCG 237 (301)
T ss_dssp TTCBCGGGSCTTCEEEECC
T ss_pred cccCCHHHcCCCcEEEEcc
Confidence 5 55555678999999986
No 7
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=72.36 E-value=7.3 Score=38.41 Aligned_cols=83 Identities=13% Similarity=0.152 Sum_probs=55.8
Q ss_pred HHHHhcCCCccccCCCceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechh
Q psy12840 289 HILHRLKVRRLRRKNSKVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGA 368 (469)
Q Consensus 289 ~il~~l~i~~~~p~~~~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGA 368 (469)
.++++++++- ..-++++|.|+.. +- .-+...|... |..|.++.-. +..+ -+.+++|||+|+.-|+
T Consensus 148 ~ll~~~~i~l-----~gk~vvVIG~s~i----VG-~p~A~lL~~~-gAtVtv~hs~-t~~L---~~~~~~ADIVI~Avg~ 212 (288)
T 1b0a_A 148 TLLERYNIDT-----FGLNAVVIGASNI----VG-RPMSMELLLA-GCTTTVTHRF-TKNL---RHHVENADLLIVAVGK 212 (288)
T ss_dssp HHHHHTTCCC-----TTCEEEEECCCTT----TH-HHHHHHHHTT-TCEEEEECSS-CSCH---HHHHHHCSEEEECSCC
T ss_pred HHHHHcCCCC-----CCCEEEEECCChH----HH-HHHHHHHHHC-CCeEEEEeCC-chhH---HHHhccCCEEEECCCC
Confidence 4556677753 3348899988642 11 1244555555 8898877542 4344 4567899999999997
Q ss_pred H-HhhhhcCCCCcEEEEEe
Q psy12840 369 G-LTHLMFLPDWAVVFELY 386 (469)
Q Consensus 369 g-Ltn~lFmppga~ViEl~ 386 (469)
. +...=|.+||++||-+-
T Consensus 213 p~lI~~~~vk~GavVIDVg 231 (288)
T 1b0a_A 213 PGFIPGDWIKEGAIVIDVG 231 (288)
T ss_dssp TTCBCTTTSCTTCEEEECC
T ss_pred cCcCCHHHcCCCcEEEEcc
Confidence 6 55545678999999986
No 8
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=72.05 E-value=15 Score=36.46 Aligned_cols=82 Identities=22% Similarity=0.246 Sum_probs=56.7
Q ss_pred HHHHhcCCCccccCCCceEEEEEEeCCC-CCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEech
Q psy12840 289 HILHRLKVRRLRRKNSKVRITLLSRDTQ-YRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG 367 (469)
Q Consensus 289 ~il~~l~i~~~~p~~~~~rvv~isR~~~-~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG 367 (469)
.++++++++- ...++++|.|+.- .|- +...|.+. +..|.+..- .+.++. +..++|||+|+.-|
T Consensus 168 ~lL~~~~i~l-----~Gk~vvViGRS~iVGkP------la~LL~~~-~ATVTi~Hs-~T~dl~---~~~~~ADIvV~A~G 231 (303)
T 4b4u_A 168 TILKENNIEI-----AGKHAVVVGRSAILGKP------MAMMLLQA-NATVTICHS-RTQNLP---ELVKQADIIVGAVG 231 (303)
T ss_dssp HHHHHTTCCC-----TTCEEEEECCCTTTHHH------HHHHHHHT-TCEEEEECT-TCSSHH---HHHHTCSEEEECSC
T ss_pred HHHHHHCCCC-----CCCEEEEEeccccccch------HHHHHHhc-CCEEEEecC-CCCCHH---HHhhcCCeEEeccC
Confidence 4667888864 3348889988763 233 44445444 788877654 355554 46789999998877
Q ss_pred -hHHhhhhcCCCCcEEEEEe
Q psy12840 368 -AGLTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 -AgLtn~lFmppga~ViEl~ 386 (469)
+++...=|.+||++||-+-
T Consensus 232 ~p~~i~~d~vk~GavVIDVG 251 (303)
T 4b4u_A 232 KAELIQKDWIKQGAVVVDAG 251 (303)
T ss_dssp STTCBCGGGSCTTCEEEECC
T ss_pred CCCccccccccCCCEEEEec
Confidence 5666666899999999874
No 9
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=68.55 E-value=20 Score=35.34 Aligned_cols=94 Identities=16% Similarity=0.111 Sum_probs=61.8
Q ss_pred EEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechhHHh---h------hhcCC
Q psy12840 307 RITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGAGLT---H------LMFLP 377 (469)
Q Consensus 307 rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGAgLt---n------~lFmp 377 (469)
+|++++|... +....+++.+.+....+..+..+++. + ..+-.+.+.++||||....+|+. . .-+++
T Consensus 174 ~v~v~nRt~~--~~~~a~~la~~~~~~~~~~v~~~~~~-~--l~~~~~~l~~~DiIINaTp~Gm~~~~~~~~~~~~~~l~ 248 (312)
T 3t4e_A 174 EIKLFNRKDD--FFEKAVAFAKRVNENTDCVVTVTDLA-D--QHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLR 248 (312)
T ss_dssp EEEEEECSST--HHHHHHHHHHHHHHHSSCEEEEEETT-C--HHHHHHHHHHCSEEEECSSTTSTTSTTCCSCCCGGGSC
T ss_pred EEEEEECCCc--hHHHHHHHHHHhhhccCcceEEechH-h--hhhhHhhccCceEEEECCcCCCCCCCCCcccCCHHHcC
Confidence 6778888632 23445667776655446677666653 3 22223457789999998888872 1 12467
Q ss_pred CCcEEEEEecCCCchhHHHHHHHCCCeE
Q psy12840 378 DWAVVFELYNCEDEHCYKDLARLRGIKY 405 (469)
Q Consensus 378 pga~ViEl~P~~~~~~y~~lA~~~Gl~Y 405 (469)
++.+|+++.-.-..+.|-..|+..|.+.
T Consensus 249 ~~~~v~D~vY~P~~T~ll~~A~~~G~~~ 276 (312)
T 3t4e_A 249 PELLVTECVYNPHMTKLLQQAQQAGCKT 276 (312)
T ss_dssp TTCEEEECCCSSSSCHHHHHHHHTTCEE
T ss_pred CCCEEEEeccCCCCCHHHHHHHHCCCeE
Confidence 8899999863224578888999999754
No 10
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=60.00 E-value=13 Score=36.55 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=54.2
Q ss_pred HHHHhcCCCccccCCCceEEEEEEeCCCCCcccCHHHHHHHHhcCC-CcEEEEEEcCCCCCHHHHHHHHccCCEEEEech
Q psy12840 289 HILHRLKVRRLRRKNSKVRITLLSRDTQYRNILNEQELIEALSQEP-SVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHG 367 (469)
Q Consensus 289 ~il~~l~i~~~~p~~~~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~-g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HG 367 (469)
.++++++++- ..-++++|.|+.. +- .-+...|.+.. |..|.+..-. + .+.-+.+++|||+|+.-|
T Consensus 147 ~ll~~~~i~l-----~gk~vvVvG~s~i----VG-~p~A~lL~~~g~~atVtv~h~~-t---~~L~~~~~~ADIVI~Avg 212 (281)
T 2c2x_A 147 HLLRRYDISI-----AGAHVVVIGRGVT----VG-RPLGLLLTRRSENATVTLCHTG-T---RDLPALTRQADIVVAAVG 212 (281)
T ss_dssp HHHHHTTCCC-----TTCEEEEECCCTT----TH-HHHHHHHTSTTTCCEEEEECTT-C---SCHHHHHTTCSEEEECSC
T ss_pred HHHHHcCCCC-----CCCEEEEECCCcH----HH-HHHHHHHhcCCCCCEEEEEECc-h---hHHHHHHhhCCEEEECCC
Confidence 3455667653 3348899988642 11 11344444432 6788766432 3 334566889999999999
Q ss_pred hH-HhhhhcCCCCcEEEEEe
Q psy12840 368 AG-LTHLMFLPDWAVVFELY 386 (469)
Q Consensus 368 Ag-Ltn~lFmppga~ViEl~ 386 (469)
+. +...=+.+||++||-+-
T Consensus 213 ~p~~I~~~~vk~GavVIDVg 232 (281)
T 2c2x_A 213 VAHLLTADMVRPGAAVIDVG 232 (281)
T ss_dssp CTTCBCGGGSCTTCEEEECC
T ss_pred CCcccCHHHcCCCcEEEEcc
Confidence 76 65555678999999885
No 11
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=58.95 E-value=13 Score=36.32 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=50.3
Q ss_pred eEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechhH-HhhhhcCCCCcEEEE
Q psy12840 306 VRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGAG-LTHLMFLPDWAVVFE 384 (469)
Q Consensus 306 ~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGAg-Ltn~lFmppga~ViE 384 (469)
-+++++.|++. + -.-+...|.+. |..|.++.- .+.++.+ .+++|||+|+.-|+. +...=|.+||++||-
T Consensus 151 k~vvVvG~s~i----V-G~plA~lL~~~-gAtVtv~~~-~t~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavVID 220 (276)
T 3ngx_A 151 NTVTIVNRSPV----V-GRPLSMMLLNR-NYTVSVCHS-KTKDIGS---MTRSSKIVVVAVGRPGFLNREMVTPGSVVID 220 (276)
T ss_dssp CEEEEECCCTT----T-HHHHHHHHHHT-TCEEEEECT-TCSCHHH---HHHHSSEEEECSSCTTCBCGGGCCTTCEEEE
T ss_pred CEEEEEcCChH----H-HHHHHHHHHHC-CCeEEEEeC-CcccHHH---hhccCCEEEECCCCCccccHhhccCCcEEEE
Confidence 48889988652 0 02255555555 889887754 2555554 578999999999874 555667799999999
Q ss_pred Ee
Q psy12840 385 LY 386 (469)
Q Consensus 385 l~ 386 (469)
+-
T Consensus 221 vg 222 (276)
T 3ngx_A 221 VG 222 (276)
T ss_dssp CC
T ss_pred ec
Confidence 85
No 12
>3czx_A Putative N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI, MCSG, protein structure initiative; 1.60A {Neisseria meningitidis MC58}
Probab=57.88 E-value=6.6 Score=35.71 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=29.0
Q ss_pred CCcEEEEEEcC-CCCCHHHHHHHHccCCEEEEechhHHhh
Q psy12840 334 PSVKVKRVVYN-RQMNFTKQLEKTYNSDILIGMHGAGLTH 372 (469)
Q Consensus 334 ~g~~v~vv~~~-e~lsf~eQi~l~~~adVlIG~HGAgLtn 372 (469)
+|++|....-. ...++.+.+++..+||++|++|--+..+
T Consensus 45 ~G~~V~~tR~~d~~~~L~~R~~~an~adlfISIH~Na~~~ 84 (182)
T 3czx_A 45 YGLTVKTDGTGKGNMPLRDAVKLIRGSDVAIEFHTNAAAN 84 (182)
T ss_dssp HCCCEEESCSSCCCCCHHHHHHHHHTCSEEEEECCBCCSS
T ss_pred CCcEEEEecCCCccCCHHHHHHHhhCCCEEEEeccCCCCC
Confidence 37777644332 3578999999999999999999765544
No 13
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=57.81 E-value=9 Score=33.64 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=42.0
Q ss_pred CceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCC-CHHHHHHHHccCCEEE
Q psy12840 304 SKVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQM-NFTKQLEKTYNSDILI 363 (469)
Q Consensus 304 ~~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~l-sf~eQi~l~~~adVlI 363 (469)
.+.-|+|.|..++.+++. +.+.+.|++. |.++.+++.. .. +..+.+.-+.++|.||
T Consensus 5 ~kv~IvY~S~~GnT~~iA--~~ia~~l~~~-g~~v~~~~~~-~~~~~~~~~~~~~~~d~ii 61 (159)
T 3fni_A 5 TSIGVFYVSEYGYSDRLA--QAIINGITKT-GVGVDVVDLG-AAVDLQELRELVGRCTGLV 61 (159)
T ss_dssp CEEEEEECTTSTTHHHHH--HHHHHHHHHT-TCEEEEEESS-SCCCHHHHHHHHHTEEEEE
T ss_pred CEEEEEEECCChHHHHHH--HHHHHHHHHC-CCeEEEEECc-CcCCHHHHHHHHHhCCEEE
Confidence 466788888877767766 3366667665 8899989885 66 8888888888888654
No 14
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=52.41 E-value=66 Score=30.69 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHccCCEEEEechhHHhhhhcCCCCcEEEEEecCC
Q psy12840 345 RQMNFTKQLEKTYNSDILIGMHGAGLTHLMFLPDWAVVFELYNCE 389 (469)
Q Consensus 345 e~lsf~eQi~l~~~adVlIG~HGAgLtn~lFmppga~ViEl~P~~ 389 (469)
..+++.|-+++++.||++||+- +|.+|+.-+ =|+-+|-||.+.
T Consensus 248 g~~sl~e~~ali~~a~l~I~~D-sg~~HlAaa-~g~P~v~lfg~t 290 (348)
T 1psw_A 248 GETQLDQAVILIAACKAIVTND-SGLMHVAAA-LNRPLVALYGPS 290 (348)
T ss_dssp TTSCHHHHHHHHHTSSEEEEES-SHHHHHHHH-TTCCEEEEESSS
T ss_pred CcCCHHHHHHHHHhCCEEEecC-CHHHHHHHH-cCCCEEEEECCC
Confidence 3588999999999999999985 455565444 377788888654
No 15
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=51.64 E-value=13 Score=32.39 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=39.8
Q ss_pred ceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEE
Q psy12840 305 KVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILI 363 (469)
Q Consensus 305 ~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlI 363 (469)
+.-|+|.|..++.+++.+ .+.+.|++. |.++.+++.. +.+..+-+.-+.++|.||
T Consensus 2 kv~IvY~S~tGnT~~~A~--~ia~~l~~~-g~~v~~~~~~-~~~~~~~~~~~~~~d~ii 56 (161)
T 3hly_A 2 SVLIGYLSDYGYSDRLSQ--AIGRGLVKT-GVAVEMVDLR-AVDPQELIEAVSSARGIV 56 (161)
T ss_dssp CEEEEECTTSTTHHHHHH--HHHHHHHHT-TCCEEEEETT-TCCHHHHHHHHHHCSEEE
T ss_pred EEEEEEECCChHHHHHHH--HHHHHHHhC-CCeEEEEECC-CCCHHHHHHHHHhCCEEE
Confidence 356778888776666653 366666665 8888888885 778888877788888654
No 16
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=51.10 E-value=20 Score=32.47 Aligned_cols=46 Identities=11% Similarity=0.281 Sum_probs=31.2
Q ss_pred HHHHHhcCCCcEEEEEEcC-CCCCHHHHHHHHc--cCCEEEEechhHHh
Q psy12840 326 LIEALSQEPSVKVKRVVYN-RQMNFTKQLEKTY--NSDILIGMHGAGLT 371 (469)
Q Consensus 326 l~~~Lk~~~g~~v~vv~~~-e~lsf~eQi~l~~--~adVlIG~HGAgLt 371 (469)
|.+.|++.+|++|....-. ..+++.+.+++.+ +||++|++|--+..
T Consensus 37 l~~~L~~~~G~~V~ltR~~D~~~~L~~R~~~an~~~adlfiSiH~Na~~ 85 (179)
T 1jwq_A 37 VESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIHANSSG 85 (179)
T ss_dssp HHHHHHTCTTEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEEEECCS
T ss_pred HHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHhhCCCEEEEEccCCCC
Confidence 4444444458887654332 3578888888876 79999999965543
No 17
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=48.56 E-value=28 Score=34.67 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=50.0
Q ss_pred ceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcC-------------CCCCH--------HHHHHHHccCCEEE
Q psy12840 305 KVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYN-------------RQMNF--------TKQLEKTYNSDILI 363 (469)
Q Consensus 305 ~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~-------------e~lsf--------~eQi~l~~~adVlI 363 (469)
.-++++|.|+.. +. .-+...|... |..|.+++-+ +..+. .+--+.+++|||||
T Consensus 177 gk~vvVIG~G~i----VG-~~~A~~L~~~-gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVI 250 (320)
T 1edz_A 177 GKKCIVINRSEI----VG-RPLAALLAND-GATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI 250 (320)
T ss_dssp TCEEEEECCCTT----TH-HHHHHHHHTT-SCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred CCEEEEECCCcc----hH-HHHHHHHHHC-CCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEE
Confidence 448899988642 11 1144555555 7787766321 00222 56678899999999
Q ss_pred EechhH--HhhhhcCCCCcEEEEEecC
Q psy12840 364 GMHGAG--LTHLMFLPDWAVVFELYNC 388 (469)
Q Consensus 364 G~HGAg--Ltn~lFmppga~ViEl~P~ 388 (469)
+.-|+. +...=+.+||++||-+--+
T Consensus 251 sAtg~p~~vI~~e~vk~GavVIDVgi~ 277 (320)
T 1edz_A 251 TGVPSENYKFPTEYIKEGAVCINFACT 277 (320)
T ss_dssp ECCCCTTCCBCTTTSCTTEEEEECSSS
T ss_pred ECCCCCcceeCHHHcCCCeEEEEcCCC
Confidence 999985 2333446899999988543
No 18
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=46.59 E-value=1.3e+02 Score=29.39 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHccCCEEEEechhHHhhhhcCCCCcEEEEEecCCC
Q psy12840 346 QMNFTKQLEKTYNSDILIGMHGAGLTHLMFLPDWAVVFELYNCED 390 (469)
Q Consensus 346 ~lsf~eQi~l~~~adVlIG~HGAgLtn~lFmppga~ViEl~P~~~ 390 (469)
.+|+.|-++++++||++||+- +|.+|+.-+ =|+-+|-||.+..
T Consensus 249 ~~sl~e~~ali~~a~~~i~~D-sG~~HlAaa-~g~P~v~lfg~t~ 291 (349)
T 3tov_A 249 KFQLGPLAAAMNRCNLLITND-SGPMHVGIS-QGVPIVALYGPSN 291 (349)
T ss_dssp CCCHHHHHHHHHTCSEEEEES-SHHHHHHHT-TTCCEEEECSSCC
T ss_pred CCCHHHHHHHHHhCCEEEECC-CCHHHHHHh-cCCCEEEEECCCC
Confidence 689999999999999999984 445555433 3777888885544
No 19
>2ljs_A Trypsin inhibitor 3; beta strand, helix, cyclic backbone, hydrolase inhibitor; HET: PCA; NMR {Momordica cochinchinensis}
Probab=40.76 E-value=4.3 Score=26.01 Aligned_cols=16 Identities=38% Similarity=0.955 Sum_probs=13.5
Q ss_pred ChhhhhhccCCCCCCc
Q psy12840 50 FPQTLDQCKDSSKCPY 65 (469)
Q Consensus 50 ~~~~~~~~~~~~~c~~ 65 (469)
-|.+..||+.|+.||=
T Consensus 4 cprilkkckrdsdcpg 19 (30)
T 2ljs_A 4 CPRILKKCRRDSDCPG 19 (30)
T ss_dssp CCCCCCBCSSGGGSST
T ss_pred cHHHHHHhccccCCch
Confidence 4778899999999973
No 20
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=39.78 E-value=38 Score=30.80 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=26.5
Q ss_pred HHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEE
Q psy12840 326 LIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIG 364 (469)
Q Consensus 326 l~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG 364 (469)
+++.+++. |.+|+++++.+...+.+.++.+.+||.||=
T Consensus 39 ~~~~~~~~-g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~ 76 (204)
T 2amj_A 39 ADGTLRDL-GHDVRIVRADSDYDVKAEVQNFLWADVVIW 76 (204)
T ss_dssp HHHHHHHT-TCEEEEEESSSCCCHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHc-CCEEEEEeCCccccHHHHHHHHHhCCEEEE
Confidence 44455544 778877777655677788888888887763
No 21
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=39.76 E-value=58 Score=31.40 Aligned_cols=57 Identities=21% Similarity=0.129 Sum_probs=37.7
Q ss_pred CHHHHHHHHccCCEEEEechhHHhhh-------hcCCCCcEEEEEe-cCCCchhHHHHHHHCCCeE
Q psy12840 348 NFTKQLEKTYNSDILIGMHGAGLTHL-------MFLPDWAVVFELY-NCEDEHCYKDLARLRGIKY 405 (469)
Q Consensus 348 sf~eQi~l~~~adVlIG~HGAgLtn~-------lFmppga~ViEl~-P~~~~~~y~~lA~~~Gl~Y 405 (469)
++.+.-+.+.++||||..-.+|+..- -+++++++|+++. .+ ..+.+-..|+..|.+.
T Consensus 165 ~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~l~~~~l~~~~~V~D~vY~P-~~T~ll~~A~~~G~~~ 229 (277)
T 3don_A 165 NLSHAESHLDEFDIIINTTPAGMNGNTDSVISLNRLASHTLVSDIVYNP-YKTPILIEAEQRGNPI 229 (277)
T ss_dssp CHHHHHHTGGGCSEEEECCC-------CCSSCCTTCCSSCEEEESCCSS-SSCHHHHHHHHTTCCE
T ss_pred cHhhHHHHhcCCCEEEECccCCCCCCCcCCCCHHHcCCCCEEEEecCCC-CCCHHHHHHHHCcCEE
Confidence 45555556889999999888887432 2367899999985 33 2356788899999864
No 22
>3ne8_A N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.24A {Bartonella henselae}
Probab=34.32 E-value=40 Score=31.82 Aligned_cols=45 Identities=13% Similarity=0.277 Sum_probs=30.1
Q ss_pred HHHHhcCCCcEEEEEEcC-CCCCHHHHHHHHc--cCCEEEEechhHHh
Q psy12840 327 IEALSQEPSVKVKRVVYN-RQMNFTKQLEKTY--NSDILIGMHGAGLT 371 (469)
Q Consensus 327 ~~~Lk~~~g~~v~vv~~~-e~lsf~eQi~l~~--~adVlIG~HGAgLt 371 (469)
.+.|++..|++|....-. ...++.+.+++.. +||++|++|--+..
T Consensus 40 ~~~L~~~g~~~V~~tR~~D~~~~l~~R~~~An~~~adlfiSiH~Na~~ 87 (234)
T 3ne8_A 40 RDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTID 87 (234)
T ss_dssp HHHHHHSSSEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEECCCCS
T ss_pred HHHHHhCCCcEEEEeCCCCCcCCHHHHHHHHHhhCCCEEEEEecCCCC
Confidence 334444423887654332 4578889888877 79999999965544
No 23
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=34.13 E-value=42 Score=31.37 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=29.0
Q ss_pred HHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEE
Q psy12840 325 ELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIG 364 (469)
Q Consensus 325 el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG 364 (469)
++++.+++. |.+|+++++.+...+.+.++.+..||+||=
T Consensus 51 ~~~~~l~~~-g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~ 89 (218)
T 3rpe_A 51 VAADFLRES-GHQVKITTVDQGYDIESEIENYLWADTIIY 89 (218)
T ss_dssp HHHHHHHHT-TCCEEEEEGGGCCCHHHHHHHHHHCSEEEE
T ss_pred HHHHHHhhC-CCEEEEEECCCccCHHHHHHHHHhCCEEEE
Confidence 355555554 788888888766788888888889998764
No 24
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=32.56 E-value=45 Score=32.86 Aligned_cols=56 Identities=13% Similarity=0.190 Sum_probs=39.9
Q ss_pred CceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEE
Q psy12840 304 SKVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILI 363 (469)
Q Consensus 304 ~~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlI 363 (469)
.+..+++.|..++.+++. +.+.+.+++. |+++.+++.. +.+..+..+.+.++|.||
T Consensus 257 ~k~~i~~~S~~gnT~~la--~~i~~~l~~~-g~~v~~~~~~-~~~~~~~~~~l~~~d~ii 312 (404)
T 2ohh_A 257 ERVTVIYDTMHGSTRKMA--HAIAEGAMSE-GVDVRVYCLH-EDDRSEIVKDILESGAIA 312 (404)
T ss_dssp SEEEEEECCSSSHHHHHH--HHHHHHHHTT-TCEEEEEETT-TSCHHHHHHHHHTCSEEE
T ss_pred CcEEEEEECCChHHHHHH--HHHHHHHHhC-CCeEEEEECC-CCCHHHHHHHHHHCCEEE
Confidence 456667777655445554 3355666654 8899999985 788888888888999876
No 25
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=29.74 E-value=40 Score=32.55 Aligned_cols=118 Identities=18% Similarity=0.291 Sum_probs=64.5
Q ss_pred EEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechhHHhhh------hcCCCCc
Q psy12840 307 RITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGAGLTHL------MFLPDWA 380 (469)
Q Consensus 307 rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGAgLtn~------lFmppga 380 (469)
+|++.+|... ..+++.+.+... + .+..+++. ++. .++||||..-++|+..- -+++|++
T Consensus 152 ~v~v~~R~~~-----~a~~la~~~~~~-~-~~~~~~~~-~l~--------~~aDiIInaTp~gm~~~~~~l~~~~l~~~~ 215 (281)
T 3o8q_A 152 SITVTNRTFA-----KAEQLAELVAAY-G-EVKAQAFE-QLK--------QSYDVIINSTSASLDGELPAIDPVIFSSRS 215 (281)
T ss_dssp EEEEEESSHH-----HHHHHHHHHGGG-S-CEEEEEGG-GCC--------SCEEEEEECSCCCC----CSCCGGGEEEEE
T ss_pred eEEEEECCHH-----HHHHHHHHhhcc-C-CeeEeeHH-Hhc--------CCCCEEEEcCcCCCCCCCCCCCHHHhCcCC
Confidence 5666666432 234555665543 2 34445553 332 68999998888886431 2356788
Q ss_pred EEEEEe-cCCCchhHHHHHHHCCCe-EEEEecCCCCCCCCCCCCCCCCCCCCccceeecHHHHHHHHHHHH
Q psy12840 381 VVFELY-NCEDEHCYKDLARLRGIK-YITWEDKSKLEPQDEGHHPNGGAHAKFTNYKFDVAEFVRLVRRGV 449 (469)
Q Consensus 381 ~ViEl~-P~~~~~~y~~lA~~~Gl~-Y~~~~~~~~l~p~d~~~hp~~g~~~k~~n~~vD~~ef~~~L~~Al 449 (469)
.|+.+. .+ ..+.+-..|+..|.. ... +-.=+.-|- .....-++....|++.+.+.|++.+
T Consensus 216 ~V~DlvY~P-~~T~ll~~A~~~G~~~~~~--Gl~Mlv~Qa------~~~f~lwtg~~~~~~~~~~~l~~~~ 277 (281)
T 3o8q_A 216 VCYDMMYGK-GYTVFNQWARQHGCAQAID--GLGMLVGQA------AESFMLWRGLRPGTKQILRELRKNL 277 (281)
T ss_dssp EEEESCCCS-SCCHHHHHHHHTTCSEEEC--THHHHHHHH------HHHHHHHHSCCCCHHHHHHHHHHHH
T ss_pred EEEEecCCC-ccCHHHHHHHHCCCCEEEC--cHHHHHHHH------HHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 899985 32 345677889999986 321 100000000 0001113456778888887777654
No 26
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=28.70 E-value=41 Score=27.50 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=32.3
Q ss_pred EEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEE
Q psy12840 307 RITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILI 363 (469)
Q Consensus 307 rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlI 363 (469)
.|+|-|+.++.+++. +.+.+.+++. |+++.+++.. +.+.. .+.++|.+|
T Consensus 3 ~iiy~S~tGnT~~~a--~~i~~~l~~~-g~~v~~~~~~-~~~~~----~l~~~d~vi 51 (137)
T 2fz5_A 3 EIVYWSGTGNTEAMA--NEIEAAVKAA-GADVESVRFE-DTNVD----DVASKDVIL 51 (137)
T ss_dssp EEEECCSSSHHHHHH--HHHHHHHHHT-TCCEEEEETT-SCCHH----HHHTCSEEE
T ss_pred EEEEECCCChHHHHH--HHHHHHHHhC-CCeEEEEEcc-cCCHH----HHhcCCEEE
Confidence 467788776556665 3466666655 8888888885 55543 356778755
No 27
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=28.18 E-value=43 Score=33.28 Aligned_cols=56 Identities=18% Similarity=0.168 Sum_probs=40.2
Q ss_pred CceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEE
Q psy12840 304 SKVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILI 363 (469)
Q Consensus 304 ~~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlI 363 (469)
.+.-|+|.|..++.+++.+ .+.+.+++. |+++.+++.. +.+..+..+.+.++|.||
T Consensus 257 ~kv~iiy~S~~GnT~~la~--~i~~~l~~~-g~~v~~~~l~-~~~~~~~~~~l~~~D~ii 312 (414)
T 2q9u_A 257 KKVTVVLDSMYGTTHRMAL--ALLDGARST-GCETVLLEMT-SSDITKVALHTYDSGAVA 312 (414)
T ss_dssp SEEEEEECCSSSHHHHHHH--HHHHHHHHT-TCEEEEEEGG-GCCHHHHHHHHHTCSEEE
T ss_pred CeEEEEEECCCchHHHHHH--HHHHHHHhC-CCeEEEEEcC-cCCHHHHHHHHHhCCEEE
Confidence 4556677777655566553 356666654 8899889885 788888888889999876
No 28
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=28.03 E-value=93 Score=29.52 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHccCCEEEEechhHHhhhhcCCCCcEEEEEecCCC
Q psy12840 346 QMNFTKQLEKTYNSDILIGMHGAGLTHLMFLPDWAVVFELYNCED 390 (469)
Q Consensus 346 ~lsf~eQi~l~~~adVlIG~HGAgLtn~lFmppga~ViEl~P~~~ 390 (469)
.+|+.|-++++++||++||+- +|.+|+--+ =|+-+|-||.+..
T Consensus 241 ~~sl~el~ali~~a~l~I~~D-SG~~HlAaa-~g~P~v~lfg~t~ 283 (326)
T 2gt1_A 241 KMSLEGVARVLAGAKFVVSVD-TGLSHLTAA-LDRPNITVYGPTD 283 (326)
T ss_dssp CCCHHHHHHHHHTCSEEEEES-SHHHHHHHH-TTCCEEEEESSSC
T ss_pred CCCHHHHHHHHHhCCEEEecC-CcHHHHHHH-cCCCEEEEECCCC
Confidence 789999999999999999995 344555444 3777888886543
No 29
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=27.58 E-value=2.3e+02 Score=24.03 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=17.1
Q ss_pred HHHhcCCCccccCCCceEEEEEEeCCCCCcccCHHHHHHHHh
Q psy12840 290 ILHRLKVRRLRRKNSKVRITLLSRDTQYRNILNEQELIEALS 331 (469)
Q Consensus 290 il~~l~i~~~~p~~~~~rvv~isR~~~~R~I~Ne~el~~~Lk 331 (469)
+.++++++ .+++++++.|-.. ..-|.+.++++++
T Consensus 27 ~r~~~~~~------~~~~i~~~G~~~~--~~K~~~~li~a~~ 60 (200)
T 2bfw_A 27 LLSKFGMD------EGVTFMFIGRFDR--GQKGVDVLLKAIE 60 (200)
T ss_dssp HHHHTTCC------SCEEEEEESCBCS--SSSCHHHHHHHHH
T ss_pred HHHHcCCC------CCCEEEEeecccc--ccCCHHHHHHHHH
Confidence 44556664 2347777776440 2234445554443
No 30
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=27.17 E-value=1.4e+02 Score=28.66 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=38.3
Q ss_pred HHHHccCCEEEEechhHHhh--------hhcCCCCcEEEEEecCCCchhHHHHHHHCCCeEE
Q psy12840 353 LEKTYNSDILIGMHGAGLTH--------LMFLPDWAVVFELYNCEDEHCYKDLARLRGIKYI 406 (469)
Q Consensus 353 i~l~~~adVlIG~HGAgLtn--------~lFmppga~ViEl~P~~~~~~y~~lA~~~Gl~Y~ 406 (469)
.+.+.++||||..-++|+.- .-++++|+.|+.+.-.-..+-+...|+..|..+.
T Consensus 199 ~~~~~~aDivIn~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~v 260 (297)
T 2egg_A 199 ETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYNPLETKWLKEAKARGARVQ 260 (297)
T ss_dssp HHTGGGCSEEEECSCTTCSSCCSCCSSCCTTCCTTCEEEECCCSSSSCHHHHHHHHTTCEEE
T ss_pred HhhhccCCEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEcCCCCCCCHHHHHHHHCcCEEE
Confidence 35678999999999999841 1235688999998631123347778999998753
No 31
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=27.02 E-value=1.1e+02 Score=25.99 Aligned_cols=34 Identities=9% Similarity=-0.166 Sum_probs=16.3
Q ss_pred CceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEE
Q psy12840 304 SKVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKR 340 (469)
Q Consensus 304 ~~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~v 340 (469)
+++.++++.|-. ..-|.+.+++++++.+++++.+
T Consensus 22 ~~~~i~~~G~~~---~~Kg~~~li~a~~~l~~~~l~i 55 (177)
T 2f9f_A 22 YGDFWLSVNRIY---PEKRIELQLEVFKKLQDEKLYI 55 (177)
T ss_dssp CCSCEEEECCSS---GGGTHHHHHHHHHHCTTSCEEE
T ss_pred CCCEEEEEeccc---cccCHHHHHHHHHhCCCcEEEE
Confidence 344555555532 2335555555555544444433
No 32
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=24.87 E-value=52 Score=29.05 Aligned_cols=52 Identities=15% Similarity=0.120 Sum_probs=32.4
Q ss_pred ceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEE
Q psy12840 305 KVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILI 363 (469)
Q Consensus 305 ~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlI 363 (469)
+.-|+|-|+.++.+++. +++.+.|++..|.++.+++.. +.+ .+.+.++|.||
T Consensus 6 kiliiy~S~~GnT~~~a--~~i~~~l~~~~g~~v~~~~l~-~~~----~~~l~~aD~ii 57 (188)
T 2ark_A 6 KVLVIYDTRTGNTKKMA--ELVAEGARSLEGTEVRLKHVD-EAT----KEDVLWADGLA 57 (188)
T ss_dssp EEEEEECCSSSHHHHHH--HHHHHHHHTSTTEEEEEEETT-TCC----HHHHHHCSEEE
T ss_pred EEEEEEECCCcHHHHHH--HHHHHHHhhcCCCeEEEEEhh-hCC----HHHHHhCCEEE
Confidence 45566677655445554 335666665138899988885 555 34466788765
No 33
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=24.64 E-value=65 Score=31.66 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=40.9
Q ss_pred CceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEE-E--echh
Q psy12840 304 SKVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILI-G--MHGA 368 (469)
Q Consensus 304 ~~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlI-G--~HGA 368 (469)
.+.-|+|.|+.++.+++. +++.+.+++. |.++.+++.. ..+..+.++.+.++|++| | .+|.
T Consensus 253 ~kv~i~y~S~~Gnt~~lA--~~i~~~l~~~-g~~v~~~~~~-~~~~~~~~~~~~~~d~ii~gsp~~~~ 316 (402)
T 1e5d_A 253 NKVVIFYDSMWHSTEKMA--RVLAESFRDE-GCTVKLMWCK-ACHHSQIMSEISDAGAVIVGSPTHNN 316 (402)
T ss_dssp SEEEEEECCSSSHHHHHH--HHHHHHHHHT-TCEEEEEETT-TSCHHHHHHHHHTCSEEEEECCCBTT
T ss_pred CcEEEEEECCChhHHHHH--HHHHHHHHhC-CCeEEEEECC-CCCHHHHHHHHHHCCEEEEECCccCC
Confidence 455566666655445544 2355556555 7888888885 778888888889999876 3 2665
No 34
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=24.63 E-value=38 Score=28.46 Aligned_cols=56 Identities=21% Similarity=0.183 Sum_probs=35.0
Q ss_pred ceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHc-cCCE-EEEe--chh
Q psy12840 305 KVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTY-NSDI-LIGM--HGA 368 (469)
Q Consensus 305 ~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~-~adV-lIG~--HGA 368 (469)
+..|+|-|+.++.+++.+ .+.+.|++. |+++.+++.. +.+..+ +. ++|. +||. +|.
T Consensus 3 ki~I~y~S~tGnT~~~A~--~ia~~l~~~-g~~v~~~~~~-~~~~~~----l~~~~d~ii~g~pty~~ 62 (148)
T 3f6r_A 3 KVLIVFGSSTGNTESIAQ--KLEELIAAG-GHEVTLLNAA-DASAEN----LADGYDAVLFGCSAWGM 62 (148)
T ss_dssp EEEEEEECSSSHHHHHHH--HHHHHHHTT-TCEEEEEETT-TBCCTT----TTTTCSEEEEEECEECS
T ss_pred eEEEEEECCCchHHHHHH--HHHHHHHhC-CCeEEEEehh-hCCHhH----hcccCCEEEEEecccCC
Confidence 457888898776566653 366666666 8899988885 433221 33 6674 4454 553
No 35
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=24.25 E-value=40 Score=29.61 Aligned_cols=57 Identities=16% Similarity=0.082 Sum_probs=34.2
Q ss_pred ceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHH--------------HHHHHccCCEEE
Q psy12840 305 KVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTK--------------QLEKTYNSDILI 363 (469)
Q Consensus 305 ~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~e--------------Qi~l~~~adVlI 363 (469)
+.-|++-|+.++.+++. +++.+.+++..|.++.+++..+..+... ..+.+.++|.||
T Consensus 3 kilii~~S~~g~t~~la--~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii 73 (198)
T 3b6i_A 3 KVLVLYYSMYGHIETMA--RAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAII 73 (198)
T ss_dssp EEEEEECCSSSHHHHHH--HHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEE
T ss_pred eEEEEEeCCCcHHHHHH--HHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhhHHHHHHCCEEE
Confidence 34566777655445554 4466667662388999888863222110 156778899866
No 36
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=23.91 E-value=2e+02 Score=27.55 Aligned_cols=88 Identities=16% Similarity=0.100 Sum_probs=55.9
Q ss_pred EEEEEEeCCCCCcccCHHHHHHHHhcC-CCcEEEEEEcCCCCCHHHHHHHHccCCEEEEechhHHhh-------hhcCCC
Q psy12840 307 RITLLSRDTQYRNILNEQELIEALSQE-PSVKVKRVVYNRQMNFTKQLEKTYNSDILIGMHGAGLTH-------LMFLPD 378 (469)
Q Consensus 307 rvv~isR~~~~R~I~Ne~el~~~Lk~~-~g~~v~vv~~~e~lsf~eQi~l~~~adVlIG~HGAgLtn-------~lFmpp 378 (469)
+|++++|.. ...+++.+.+... ++.++..++++ ++. +.+.++||||..-.+|+.. .-++++
T Consensus 153 ~v~i~~R~~-----~~a~~la~~~~~~~~~~~i~~~~~~---~l~---~~l~~~DiVInaTp~Gm~~~~~~pi~~~~l~~ 221 (283)
T 3jyo_A 153 KLQVADLDT-----SRAQALADVINNAVGREAVVGVDAR---GIE---DVIAAADGVVNATPMGMPAHPGTAFDVSCLTK 221 (283)
T ss_dssp EEEEECSSH-----HHHHHHHHHHHHHHTSCCEEEECST---THH---HHHHHSSEEEECSSTTSTTSCSCSSCGGGCCT
T ss_pred EEEEEECCH-----HHHHHHHHHHHhhcCCceEEEcCHH---HHH---HHHhcCCEEEECCCCCCCCCCCCCCCHHHhCC
Confidence 566776643 2235566666432 34565554432 233 3567899999888887753 224678
Q ss_pred CcEEEEEecCCCchhHHHHHHHCCCeE
Q psy12840 379 WAVVFELYNCEDEHCYKDLARLRGIKY 405 (469)
Q Consensus 379 ga~ViEl~P~~~~~~y~~lA~~~Gl~Y 405 (469)
+++|+++.=.-..+.+-..|+..|.+.
T Consensus 222 ~~~v~DlvY~P~~T~ll~~A~~~G~~~ 248 (283)
T 3jyo_A 222 DHWVGDVVYMPIETELLKAARALGCET 248 (283)
T ss_dssp TCEEEECCCSSSSCHHHHHHHHHTCCE
T ss_pred CCEEEEecCCCCCCHHHHHHHHCcCeE
Confidence 899999863224567888999999754
No 37
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=22.84 E-value=28 Score=31.24 Aligned_cols=55 Identities=15% Similarity=0.119 Sum_probs=33.2
Q ss_pred ceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCC--------------------CH-HHHHHHHccCCEEE
Q psy12840 305 KVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQM--------------------NF-TKQLEKTYNSDILI 363 (469)
Q Consensus 305 ~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~l--------------------sf-~eQi~l~~~adVlI 363 (469)
+.-|++-|..++.+++. +++.+.+++. |.+|.+++.. ++ .+ .+.++.+.+||.||
T Consensus 8 kilii~~S~~g~T~~la--~~i~~~l~~~-g~~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii 83 (211)
T 1ydg_A 8 KLAIVFYSSTGTGYAMA--QEAAEAGRAA-GAEVRLLKVR-ETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIV 83 (211)
T ss_dssp EEEEEECCSSSHHHHHH--HHHHHHHHHT-TCEEEEEECC-CCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEE
T ss_pred eEEEEEECCCChHHHHH--HHHHHHHhcC-CCEEEEEecc-ccccchhhhcccccccccccccchhHHHHHHHHHCCEEE
Confidence 45555666644345554 3456666654 8899999886 33 11 23456677888866
No 38
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=21.81 E-value=2.8e+02 Score=26.55 Aligned_cols=90 Identities=14% Similarity=0.199 Sum_probs=55.9
Q ss_pred cCCEEEEechhHHhh--------hhcCCCCcEEEEEecCCCchhHHHHHHHCCCeEEEEecCCCCCCCCCCCCCCCCCCC
Q psy12840 358 NSDILIGMHGAGLTH--------LMFLPDWAVVFELYNCEDEHCYKDLARLRGIKYITWEDKSKLEPQDEGHHPNGGAHA 429 (469)
Q Consensus 358 ~adVlIG~HGAgLtn--------~lFmppga~ViEl~P~~~~~~y~~lA~~~Gl~Y~~~~~~~~l~p~d~~~hp~~g~~~ 429 (469)
++||||..-.+|+.. .-+++++++|+++.=.-..+.+-..|+..|.+... +-.=+.-|- .-...
T Consensus 178 ~~DivInaTp~Gm~~~~~~~pi~~~~l~~~~~v~DlvY~P~~T~ll~~A~~~G~~~~~--Gl~MLv~Qa------~~~f~ 249 (282)
T 3fbt_A 178 KGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNPVETLFLKYARESGVKAVN--GLYMLVSQA------AASEE 249 (282)
T ss_dssp CCSEEEECSSTTSTTSTTCCSSCHHHHTTCSEEEESCCSSSSCHHHHHHHHTTCEEEC--SHHHHHHHH------HHHHH
T ss_pred cCCEEEECCccCccCCCccCCCCHHHcCCCCEEEEEeeCCCCCHHHHHHHHCcCeEeC--cHHHHHHHH------HHHHH
Confidence 899999888887642 12357889999985222457888999999986422 100000000 00011
Q ss_pred CccceeecHHHHHHHHHHHHHHHHhc
Q psy12840 430 KFTNYKFDVAEFVRLVRRGVKHVKAH 455 (469)
Q Consensus 430 k~~n~~vD~~ef~~~L~~Al~~v~~~ 455 (469)
-+.....|.+.++++++++.+.++..
T Consensus 250 lwtg~~~~~~~~~~~~~~~~~~~~~~ 275 (282)
T 3fbt_A 250 IWNDISIDEIIVDEIFEVLEEKIKSE 275 (282)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCCCCHHHHHHHHHHHHHhhhcc
Confidence 13456788888899998888877653
No 39
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=21.68 E-value=1.5e+02 Score=27.81 Aligned_cols=56 Identities=16% Similarity=0.030 Sum_probs=37.1
Q ss_pred ceEEEEEEeCCCCCcccCHHH----HHHHHhcCCCcEEEEEEcCCCCC-----------HHHHHHHHccCCEEEE
Q psy12840 305 KVRITLLSRDTQYRNILNEQE----LIEALSQEPSVKVKRVVYNRQMN-----------FTKQLEKTYNSDILIG 364 (469)
Q Consensus 305 ~~rvv~isR~~~~R~I~Ne~e----l~~~Lk~~~g~~v~vv~~~e~ls-----------f~eQi~l~~~adVlIG 364 (469)
..+|++|.=+. |.=.|-.. +++.+++. |.++.++++. +++ +.+-++.+..||.||=
T Consensus 34 ~mkIliI~GS~--r~~s~t~~La~~~~~~l~~~-g~eve~idL~-~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~ 104 (247)
T 2q62_A 34 RPRILILYGSL--RTVSYSRLLAEEARRLLEFF-GAEVKVFDPS-GLPLPDAAPVSHPKVQELRELSIWSEGQVW 104 (247)
T ss_dssp CCEEEEEECCC--CSSCHHHHHHHHHHHHHHHT-TCEEEECCCT-TCCCTTSSCTTSHHHHHHHHHHHHCSEEEE
T ss_pred CCeEEEEEccC--CCCCHHHHHHHHHHHHHhhC-CCEEEEEEhh-cCCCCcCCCCCCHHHHHHHHHHHHCCEEEE
Confidence 45777776432 22223333 44445444 8999999886 677 7888999999999874
No 40
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=20.95 E-value=1e+02 Score=27.53 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=17.6
Q ss_pred CHHHHHHHH--ccCCEEEEechhHH
Q psy12840 348 NFTKQLEKT--YNSDILIGMHGAGL 370 (469)
Q Consensus 348 sf~eQi~l~--~~adVlIG~HGAgL 370 (469)
++.+.+++. .+||++|++|--+.
T Consensus 65 ~L~~R~~~An~~~aDlfISIH~Na~ 89 (180)
T 3qay_A 65 EKSYKIPRVNSGGYDLLIELHLNAS 89 (180)
T ss_dssp HHHHHHHHHHHSCCSEEEEEEEECS
T ss_pred CHHHHHHHHHhcCCCEEEEeeeCCC
Confidence 377777777 46999999996553
No 41
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=20.95 E-value=39 Score=29.73 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=31.3
Q ss_pred ceEEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHH---------------HHHHHHccCCEEE
Q psy12840 305 KVRITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFT---------------KQLEKTYNSDILI 363 (469)
Q Consensus 305 ~~rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~---------------eQi~l~~~adVlI 363 (469)
+.-|++-|+.++.+++. +++.+.+++. |.++.+++.. ++... +..+.+.++|.||
T Consensus 7 kilii~~S~~g~T~~la--~~i~~~l~~~-g~~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii 76 (200)
T 2a5l_A 7 YILVLYYSRHGATAEMA--RQIARGVEQG-GFEARVRTVP-AVSTECEAVAPDIPAEGALYATLEDLKNCAGLA 76 (200)
T ss_dssp EEEEEECCSSSHHHHHH--HHHHHHHHHT-TCEEEEEBCC-CEEC-------------CCBCCHHHHHTCSEEE
T ss_pred eEEEEEeCCCChHHHHH--HHHHHHHhhC-CCEEEEEEhh-hccchhhhhccccccccCchhhHHHHHHCCEEE
Confidence 45566666644334444 3355555554 8888888775 32111 1256677889866
No 42
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=20.88 E-value=61 Score=26.76 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=32.1
Q ss_pred EEEEEEeCCCCCcccCHHHHHHHHhcCCCcEEEEEEcCCCCCHHHHHHHHccCCEEE
Q psy12840 307 RITLLSRDTQYRNILNEQELIEALSQEPSVKVKRVVYNRQMNFTKQLEKTYNSDILI 363 (469)
Q Consensus 307 rvv~isR~~~~R~I~Ne~el~~~Lk~~~g~~v~vv~~~e~lsf~eQi~l~~~adVlI 363 (469)
.|+|-|..++.+++. +.+.+.|++. |+++.+++.. +.+.. -+.++|.||
T Consensus 2 ~I~Y~S~tGnT~~iA--~~ia~~l~~~-g~~v~~~~~~-~~~~~----~l~~~d~ii 50 (138)
T 5nul_A 2 KIVYWSGTGNTEKMA--ELIAKGIIES-GKDVNTINVS-DVNID----ELLNEDILI 50 (138)
T ss_dssp EEEEECSSSHHHHHH--HHHHHHHHHT-TCCCEEEEGG-GCCHH----HHTTCSEEE
T ss_pred EEEEECCCchHHHHH--HHHHHHHHHC-CCeEEEEEhh-hCCHH----HHhhCCEEE
Confidence 477888877656655 3366666665 8888888885 55543 356777543
Done!