RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12840
(469 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 3e-04
Identities = 57/403 (14%), Positives = 113/403 (28%), Gaps = 118/403 (29%)
Query: 93 PGEHKGWVKSKAAQFDTFYRQADFG-Y---VKEQREEMTVLCEPALAEDSSLECSKHLRF 148
G K WV + DF + +K TVL E ++ + R
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-EMLQKLLYQIDPNWTSRS 217
Query: 149 CRGRNIFMDLTGLNTRKEPI----RYK-----MDVLKHGQIGAVNMYHHFC--------- 190
NI + + + + Y+ + +++ + N ++ C
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA--WNAFNLSCKILLTTRFK 275
Query: 191 ---DFFNLYASQHVNASH-PDVFSTDVHIMIWESYTYASAFADTFRAFTRHPVWDLKTFT 246
DF + + H++ H + D E + DL
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPD------EV-------KSLLLKYLDCRPQDLP--- 319
Query: 247 GLTVCFKNLVLPLLPRMIYGLYYNTPLIW------GCEK-SGLMEAFSKHILHRLKVRRL 299
V P +I + W C+K + ++E+ L+ L+
Sbjct: 320 -REVL---TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS----LNVLEPAEY 371
Query: 300 R---------RKNSKVRITLLSR------DTQYRNILNE---QELIEALSQEPSVKVKRV 341
R ++ + LLS + ++N+ L+E +E ++ +
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--- 428
Query: 342 VYNRQMNFTKQLEKTYNSDILIGMHGAGLTHLMFLPDWAVVFELYNCEDEHCYKDLARLR 401
+ + +LE Y +H + + YN DL
Sbjct: 429 -PSIYLELKVKLENEYA------LH-------------RSIVDHYNIPKTFDSDDLIPPY 468
Query: 402 GIKYITWEDKSKLEPQDEGHHPNGGAHAK--------FTNYKF 436
+Y GHH H + F +++F
Sbjct: 469 LDQYFYSH---------IGHHLKNIEHPERMTLFRMVFLDFRF 502
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 4e-04
Identities = 73/500 (14%), Positives = 127/500 (25%), Gaps = 190/500 (38%)
Query: 114 ADF-GYVKEQREEMTVLCEPALAEDSSLECS-KHL--RFCRGRNI--------FMDLTGL 161
F GYV E D L + G +I + T L
Sbjct: 62 GKFLGYVSSLVEP-----SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 162 NTRKEPIR--YKMDV--------------LKHGQIGAVNMYHHF------CDFF----NL 195
KE I+ + + G + F D+F +L
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 196 Y-------------ASQHVN---ASHPD---VFSTDVHIMIW---------ESYTYASA- 226
Y +++ ++ + D VF+ ++I+ W + Y S
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL-LSIP 235
Query: 227 -------------FADTFRAFTRHPVWDLKTFTGLTVCFKNLVLPLLPRM------IYGL 267
+ T + P G T + LV + +
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 268 YYN--TPLIW-GCEKSGLMEAFSKHIL-----------------HRLKVRRLRRK----- 302
T L + G EA+ L L + L ++
Sbjct: 296 VRKAITVLFFIGVRCY---EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 303 ----------NSKVRITLL-SRD---------------TQYRNILNEQELIEALSQEPSV 336
+V I+L+ R L + S+ P
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ--SRIPFS 410
Query: 337 KVKRVVYNRQMNFTKQLEKT--YNSDILIG-----MHGAGLTHLMFLP-DWAV-VFELYN 387
+ K NR F L ++S +L+ ++ F D + V++ ++
Sbjct: 411 ERKLKFSNR---F---LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Query: 388 CEDEHCYKDLARLRGIKYIT-----WEDKSKLEPQDEGHH-----PNGGAH--AKFTNYK 435
D R + I WE ++ + H P GGA T+
Sbjct: 465 GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA----THILDFGP-GGASGLGVLTH-- 517
Query: 436 FDVAEFVRLVR-RGVKHVKA 454
R GV+ + A
Sbjct: 518 -------RNKDGTGVRVIVA 530
Score = 30.0 bits (67), Expect = 2.4
Identities = 40/257 (15%), Positives = 69/257 (26%), Gaps = 88/257 (34%)
Query: 263 MIYGLYYNTPL---IW-GCEKSGLMEAFSKHILHRLKVRRLRRKNSKVRITLLSRDTQYR 318
M LY + +W + + + IL + N +T+ + +
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNH-FKDTYGFSILD------IVINNPV-NLTIHFGGEKGK 1682
Query: 319 NIL-NEQELIEALSQEPSVKVKRVVYNRQMNFTK--------QLEKTYN----------- 358
I N +I + +K +++ + T L T
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 359 -------------SDILIGMH--G-----AGLTHLMFLPDWAVVFELYNCEDEHCYKDLA 398
G H G A L +M + V ++
Sbjct: 1743 AFEDLKSKGLIPADATFAG-HSLGEYAALASLADVMSIES-LV--------------EVV 1786
Query: 399 RLRGIKYITWEDKSKLEPQDEGHHPNGGAHAKFTNYKFDVAEFVR-LVRRGVKHVKAHSK 457
RG + P+DE N G A N A F + ++ V+ V +
Sbjct: 1787 FYRG-MTM-----QVAVPRDELGRSNYGMIA--INPGRVAASFSQEALQYVVERVGKRTG 1838
Query: 458 F-----------QQYVA 463
+ QQYVA
Sbjct: 1839 WLVEIVNYNVENQQYVA 1855
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 3.7
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 12/31 (38%)
Query: 122 QREEMTVLCE-----------PALAEDSSLE 141
+++ + L + PALA +++E
Sbjct: 18 EKQALKKL-QASLKLYADDSAPALAIKATME 47
>3rko_K NADH-quinone oxidoreductase subunit K; complex I, proton pump,
membrane protein, Na ubiquinone, cytoplasmic membrane;
HET: LFA CA7; 3.00A {Escherichia coli}
Length = 100
Score = 26.8 bits (60), Expect = 5.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 10 MIPLQWFLFIITLSFHIG 27
MIPLQ L + + F +G
Sbjct: 1 MIPLQHGLILAAILFVLG 18
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.449
Gapped
Lambda K H
0.267 0.0779 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,445,579
Number of extensions: 441762
Number of successful extensions: 1142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1130
Number of HSP's successfully gapped: 11
Length of query: 469
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 372
Effective length of database: 3,993,456
Effective search space: 1485565632
Effective search space used: 1485565632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.4 bits)