Query psy12841
Match_columns 88
No_of_seqs 44 out of 46
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 21:10:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12841.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12841hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p63_A Cell division control p 41.2 1.5 5.2E-05 27.4 -2.6 14 72-85 24-37 (56)
2 1r8s_A ADP-ribosylation factor 39.1 30 0.001 20.7 3.1 26 33-59 42-67 (164)
3 3iev_A GTP-binding protein ERA 38.9 43 0.0015 24.0 4.4 15 34-48 58-72 (308)
4 1iej_A Ovotransferrin; iron, m 38.7 14 0.00047 28.3 1.8 16 62-77 104-119 (332)
5 1h45_A Lactoferrin; metal tran 38.4 14 0.00048 28.2 1.8 16 62-77 105-120 (334)
6 3cbq_A GTP-binding protein REM 36.6 26 0.00089 22.6 2.7 23 34-56 71-93 (195)
7 2y8e_A RAB-protein 6, GH09086P 36.1 42 0.0015 20.2 3.5 21 35-56 63-83 (179)
8 3t1o_A Gliding protein MGLA; G 34.4 33 0.0011 21.0 2.8 26 33-59 72-97 (198)
9 1ryo_A Serotransferrin; iron t 33.8 17 0.00058 27.7 1.6 16 62-77 107-122 (327)
10 1z08_A RAS-related protein RAB 32.4 23 0.00079 21.3 1.8 23 33-56 53-75 (170)
11 2oil_A CATX-8, RAS-related pro 32.1 23 0.00078 22.2 1.8 26 33-59 72-97 (193)
12 2cxx_A Probable GTP-binding pr 32.1 45 0.0016 20.4 3.2 23 36-58 45-77 (190)
13 1c1y_A RAS-related protein RAP 31.7 32 0.0011 20.5 2.3 23 34-57 50-72 (167)
14 3q85_A GTP-binding protein REM 31.6 19 0.00066 21.7 1.4 23 34-56 50-72 (169)
15 3hrg_A Uncharacterized protein 31.4 25 0.00087 25.5 2.2 41 47-88 47-87 (257)
16 1u8z_A RAS-related protein RAL 30.8 34 0.0012 20.2 2.3 23 34-57 51-73 (168)
17 2ce2_X GTPase HRAS; signaling 30.7 33 0.0011 20.1 2.3 23 34-57 50-72 (166)
18 2bov_A RAla, RAS-related prote 30.6 37 0.0013 21.2 2.6 23 34-57 61-83 (206)
19 1wms_A RAB-9, RAB9, RAS-relate 30.5 49 0.0017 20.0 3.1 25 35-60 56-80 (177)
20 1upt_A ARL1, ADP-ribosylation 30.5 38 0.0013 20.3 2.6 24 34-58 50-73 (171)
21 1z0j_A RAB-22, RAS-related pro 30.3 32 0.0011 20.5 2.2 24 34-58 54-77 (170)
22 2fh5_B SR-beta, signal recogni 30.2 27 0.00091 22.4 1.9 25 34-58 53-77 (214)
23 1z0f_A RAB14, member RAS oncog 30.1 30 0.001 20.8 2.1 25 34-59 63-87 (179)
24 3clv_A RAB5 protein, putative; 29.9 69 0.0023 19.4 3.7 22 35-57 93-114 (208)
25 1moz_A ARL1, ADP-ribosylation 29.8 24 0.00082 21.7 1.6 22 34-56 61-82 (183)
26 1ek0_A Protein (GTP-binding pr 29.8 40 0.0014 20.0 2.5 24 34-58 51-74 (170)
27 3skp_A Serotransferrin; iron b 29.2 25 0.00084 27.4 1.9 18 59-76 99-116 (342)
28 1svi_A GTP-binding protein YSX 29.1 22 0.00074 22.2 1.3 24 35-58 69-101 (195)
29 2il1_A RAB12; G-protein, GDP, 29.0 42 0.0014 21.3 2.7 23 34-57 74-96 (192)
30 3bc1_A RAS-related protein RAB 28.6 50 0.0017 20.1 2.9 25 34-59 69-93 (195)
31 1r2q_A RAS-related protein RAB 28.6 43 0.0015 19.9 2.5 24 34-58 54-77 (170)
32 2efe_B Small GTP-binding prote 28.2 38 0.0013 20.6 2.3 24 34-58 60-83 (181)
33 1zj6_A ADP-ribosylation factor 28.1 33 0.0011 21.4 2.1 23 34-57 59-81 (187)
34 2erx_A GTP-binding protein DI- 28.0 48 0.0016 19.7 2.7 23 34-57 50-72 (172)
35 4bas_A ADP-ribosylation factor 27.6 47 0.0016 20.6 2.7 25 33-58 61-85 (199)
36 2a9k_A RAS-related protein RAL 27.4 47 0.0016 20.1 2.6 24 34-58 65-88 (187)
37 2dyk_A GTP-binding protein; GT 27.4 65 0.0022 19.0 3.2 26 34-59 48-79 (161)
38 1kao_A RAP2A; GTP-binding prot 27.1 49 0.0017 19.5 2.6 23 34-57 50-72 (167)
39 3pqc_A Probable GTP-binding pr 26.8 25 0.00087 21.6 1.3 25 34-58 67-100 (195)
40 1mh1_A RAC1; GTP-binding, GTPa 26.7 34 0.0012 20.8 1.9 23 34-57 52-74 (186)
41 2hup_A RAS-related protein RAB 26.3 51 0.0018 21.2 2.8 26 34-60 77-102 (201)
42 2ew1_A RAS-related protein RAB 26.1 57 0.002 21.3 3.0 24 34-58 74-97 (201)
43 1wf3_A GTP-binding protein; GT 25.6 33 0.0011 24.8 1.9 16 33-48 53-68 (301)
44 2bme_A RAB4A, RAS-related prot 25.3 60 0.002 19.9 2.8 24 35-59 59-82 (186)
45 2fg5_A RAB-22B, RAS-related pr 25.3 51 0.0017 20.8 2.6 24 33-57 70-93 (192)
46 4dkx_A RAS-related protein RAB 25.2 46 0.0016 22.8 2.5 25 33-58 60-84 (216)
47 2nzj_A GTP-binding protein REM 25.2 37 0.0013 20.5 1.8 25 34-58 51-76 (175)
48 1zbd_A Rabphilin-3A; G protein 24.5 56 0.0019 20.5 2.6 24 34-58 56-79 (203)
49 4dhe_A Probable GTP-binding pr 24.4 37 0.0013 21.7 1.8 14 34-47 78-91 (223)
50 2atv_A RERG, RAS-like estrogen 24.3 48 0.0016 20.9 2.3 22 34-57 75-96 (196)
51 2yc2_C IFT27, small RAB-relate 24.3 44 0.0015 20.8 2.1 24 34-58 72-95 (208)
52 1x3s_A RAS-related protein RAB 23.8 35 0.0012 21.1 1.5 23 34-57 63-85 (195)
53 1m7b_A RND3/RHOE small GTP-bin 23.4 52 0.0018 20.5 2.3 23 33-56 53-75 (184)
54 3kdf_A Replication protein A 1 23.3 32 0.0011 22.9 1.3 17 63-79 16-32 (121)
55 1ky3_A GTP-binding protein YPT 23.3 41 0.0014 20.3 1.7 22 34-56 57-78 (182)
56 2gf0_A GTP-binding protein DI- 23.2 55 0.0019 20.3 2.4 23 34-57 55-77 (199)
57 2h57_A ADP-ribosylation factor 23.2 54 0.0018 20.5 2.3 22 34-56 66-87 (190)
58 2g6b_A RAS-related protein RAB 23.1 36 0.0012 20.7 1.5 22 34-56 59-80 (180)
59 1ksh_A ARF-like protein 2; sma 22.9 40 0.0014 20.8 1.7 22 34-56 61-82 (186)
60 3reg_A RHO-like small GTPase; 22.8 46 0.0016 20.8 2.0 24 33-57 69-92 (194)
61 2h17_A ADP-ribosylation factor 22.5 58 0.002 20.2 2.4 23 34-57 64-86 (181)
62 3lxw_A GTPase IMAP family memb 22.4 72 0.0025 21.9 3.0 24 33-56 68-99 (247)
63 1vg8_A RAS-related protein RAB 22.1 34 0.0012 21.5 1.3 22 34-56 56-77 (207)
64 3con_A GTPase NRAS; structural 21.8 44 0.0015 20.7 1.7 22 34-56 68-89 (190)
65 1g16_A RAS-related protein SEC 21.7 31 0.0011 20.6 0.9 12 34-45 51-62 (170)
66 2hxs_A RAB-26, RAS-related pro 21.5 49 0.0017 20.0 1.9 22 34-56 55-76 (178)
67 2b6h_A ADP-ribosylation factor 21.5 41 0.0014 21.5 1.5 23 33-56 71-93 (192)
68 1z2a_A RAS-related protein RAB 21.3 29 0.001 20.7 0.8 11 34-44 53-63 (168)
69 2p5s_A RAS and EF-hand domain 20.7 71 0.0024 20.2 2.6 23 34-57 76-98 (199)
70 3q3j_B RHO-related GTP-binding 20.3 59 0.002 21.2 2.2 24 33-57 73-96 (214)
71 4eq9_A ABC transporter substra 20.2 53 0.0018 20.6 1.9 17 59-75 105-121 (246)
72 1gwn_A RHO-related GTP-binding 20.0 65 0.0022 21.0 2.3 23 33-56 74-96 (205)
No 1
>2p63_A Cell division control protein 4; ubiquitination, helix bundle, SCF complex, cell cycle; 2.67A {Saccharomyces cerevisiae}
Probab=41.23 E-value=1.5 Score=27.38 Aligned_cols=14 Identities=43% Similarity=0.743 Sum_probs=12.6
Q ss_pred eeeccccccccccc
Q psy12841 72 VCFKNLVLPLLPRM 85 (88)
Q Consensus 72 VCFk~a~f~lLpRm 85 (88)
+|||+.+|.|+..|
T Consensus 24 ~~~knLiF~Lvs~m 37 (56)
T 2p63_A 24 AYFKNLLFRLVANM 37 (56)
T ss_dssp THHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 79999999998876
No 2
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=39.12 E-value=30 Score=20.70 Aligned_cols=26 Identities=4% Similarity=0.349 Sum_probs=17.5
Q ss_pred CceeEEEeeccccCcchHHHHhhhhcC
Q psy12841 33 TDVHIMIWESYTYASAFADTFKAFTRH 59 (88)
Q Consensus 33 ~Dv~Iv~Wdt~~Y~d~F~~tw~aFt~~ 59 (88)
.++.+.+|||.+..+ |...|+.+-++
T Consensus 42 ~~~~~~i~Dt~G~~~-~~~~~~~~~~~ 67 (164)
T 1r8s_A 42 KNISFTVWDVGGQDK-IRPLWRHYFQN 67 (164)
T ss_dssp SSCEEEEEECCCCGG-GHHHHHHHTTT
T ss_pred CCEEEEEEEcCCChh-hHHHHHHHhcc
Confidence 357889999977543 56677665443
No 3
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=38.91 E-value=43 Score=23.98 Aligned_cols=15 Identities=7% Similarity=0.189 Sum_probs=12.2
Q ss_pred ceeEEEeeccccCcc
Q psy12841 34 DVHIMIWESYTYASA 48 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~ 48 (88)
+.+|++|||-|..+.
T Consensus 58 ~~~i~lvDTPG~~~~ 72 (308)
T 3iev_A 58 EAQIIFLDTPGIYEP 72 (308)
T ss_dssp TEEEEEEECCCCCCC
T ss_pred CCeEEEEECcCCCcc
Confidence 889999999776553
No 4
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A*
Probab=38.74 E-value=14 Score=28.28 Aligned_cols=16 Identities=25% Similarity=0.627 Sum_probs=13.9
Q ss_pred ccccccCCceeeeccc
Q psy12841 62 WDLKTFTGLTVCFKNL 77 (88)
Q Consensus 62 ~~L~~~~gKrVCFk~a 77 (88)
+.|+|..|||+||-+.
T Consensus 104 isl~dLkGKksChtg~ 119 (332)
T 1iej_A 104 FTVNDLQGKTSCHTGL 119 (332)
T ss_dssp CCGGGCTTCEEEESCT
T ss_pred CCHHHHCCCceEcCCC
Confidence 4899999999999764
No 5
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A
Probab=38.38 E-value=14 Score=28.20 Aligned_cols=16 Identities=31% Similarity=0.767 Sum_probs=13.9
Q ss_pred ccccccCCceeeeccc
Q psy12841 62 WDLKTFTGLTVCFKNL 77 (88)
Q Consensus 62 ~~L~~~~gKrVCFk~a 77 (88)
+.|.+..|||+||-+.
T Consensus 105 isl~dLkGKksch~~~ 120 (334)
T 1h45_A 105 FQLNELQGLKSCHTGL 120 (334)
T ss_dssp CCGGGCTTCEEEESCT
T ss_pred CCHHHHCCCceecCCC
Confidence 4899999999999664
No 6
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=36.58 E-value=26 Score=22.63 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=15.0
Q ss_pred ceeEEEeeccccCcchHHHHhhh
Q psy12841 34 DVHIMIWESYTYASAFADTFKAF 56 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aF 56 (88)
.+++.+|||.+-....+..|+.+
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~~~ 93 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRDHC 93 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHHHH
T ss_pred EEEEEEEecCCCccchhhhHHHh
Confidence 57889999966555444455544
No 7
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=36.13 E-value=42 Score=20.16 Aligned_cols=21 Identities=14% Similarity=0.534 Sum_probs=13.3
Q ss_pred eeEEEeeccccCcchHHHHhhh
Q psy12841 35 VHIMIWESYTYASAFADTFKAF 56 (88)
Q Consensus 35 v~Iv~Wdt~~Y~d~F~~tw~aF 56 (88)
+.+.+|||.+-. .|...|+.+
T Consensus 63 ~~~~~~Dt~G~~-~~~~~~~~~ 83 (179)
T 2y8e_A 63 VRLQLWDTAGQE-RFRSLIPSY 83 (179)
T ss_dssp EEEEEEEECCSG-GGGGGSHHH
T ss_pred EEEEEEECCCcH-HHHHHHHHH
Confidence 578999996632 344555544
No 8
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=34.43 E-value=33 Score=21.01 Aligned_cols=26 Identities=8% Similarity=0.055 Sum_probs=17.2
Q ss_pred CceeEEEeeccccCcchHHHHhhhhcC
Q psy12841 33 TDVHIMIWESYTYASAFADTFKAFTRH 59 (88)
Q Consensus 33 ~Dv~Iv~Wdt~~Y~d~F~~tw~aFt~~ 59 (88)
..+.+.+|||.+-. .|...|+.+-++
T Consensus 72 ~~~~~~i~Dt~G~~-~~~~~~~~~~~~ 97 (198)
T 3t1o_A 72 FKTRFHLYTVPGQV-FYNASRKLILRG 97 (198)
T ss_dssp CEEEEEEEECCSCC-SCSHHHHHHTTT
T ss_pred CceEEEEEeCCChH-HHHHHHHHHHhc
Confidence 45788999996643 356667665443
No 9
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=33.78 E-value=17 Score=27.66 Aligned_cols=16 Identities=19% Similarity=0.613 Sum_probs=13.9
Q ss_pred ccccccCCceeeeccc
Q psy12841 62 WDLKTFTGLTVCFKNL 77 (88)
Q Consensus 62 ~~L~~~~gKrVCFk~a 77 (88)
+.|+|..|||.||-+.
T Consensus 107 isl~dLkGKk~ch~~~ 122 (327)
T 1ryo_A 107 FQMNQLRGKKSCHTGL 122 (327)
T ss_dssp CCGGGCTTCCEEESCT
T ss_pred CChHHhCCCceEcCCC
Confidence 4899999999999764
No 10
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=32.45 E-value=23 Score=21.27 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=11.0
Q ss_pred CceeEEEeeccccCcchHHHHhhh
Q psy12841 33 TDVHIMIWESYTYASAFADTFKAF 56 (88)
Q Consensus 33 ~Dv~Iv~Wdt~~Y~d~F~~tw~aF 56 (88)
..+++.+|||.+-. .|...|+.+
T Consensus 53 ~~~~l~i~Dt~G~~-~~~~~~~~~ 75 (170)
T 1z08_A 53 KRVNLAIWDTAGQE-RFHALGPIY 75 (170)
T ss_dssp CEEEEEEEECCCC--------CCS
T ss_pred EEEEEEEEECCCcH-hhhhhHHHH
Confidence 34678999996633 344455443
No 11
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=32.13 E-value=23 Score=22.21 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=16.4
Q ss_pred CceeEEEeeccccCcchHHHHhhhhcC
Q psy12841 33 TDVHIMIWESYTYASAFADTFKAFTRH 59 (88)
Q Consensus 33 ~Dv~Iv~Wdt~~Y~d~F~~tw~aFt~~ 59 (88)
.+++|.+|||.+..+ |...|+.+-+.
T Consensus 72 ~~~~~~i~Dt~G~~~-~~~~~~~~~~~ 97 (193)
T 2oil_A 72 AAVKAQIWDTAGLER-YRAITSAYYRG 97 (193)
T ss_dssp EEEEEEEEEESCCCT-TCTTHHHHHTT
T ss_pred EEEEEEEEeCCCchh-hhhhhHHHhcc
Confidence 357788999976543 45556555443
No 12
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=32.12 E-value=45 Score=20.41 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=14.2
Q ss_pred eEEEeeccccC----------cchHHHHhhhhc
Q psy12841 36 HIMIWESYTYA----------SAFADTFKAFTR 58 (88)
Q Consensus 36 ~Iv~Wdt~~Y~----------d~F~~tw~aFt~ 58 (88)
++.+|||.|+. +.|...|..+.+
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 77 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE 77 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHH
Confidence 46789997763 345555555543
No 13
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=31.71 E-value=32 Score=20.48 Aligned_cols=23 Identities=9% Similarity=0.150 Sum_probs=14.4
Q ss_pred ceeEEEeeccccCcchHHHHhhhh
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFT 57 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt 57 (88)
++++.+|||.+..+ |...|+.+-
T Consensus 50 ~~~~~l~D~~G~~~-~~~~~~~~~ 72 (167)
T 1c1y_A 50 QCMLEILDTAGTEQ-FTAMRDLYM 72 (167)
T ss_dssp EEEEEEEEECSSCS-STTHHHHHH
T ss_pred EEEEEEEECCChHH-HHHHHHHHh
Confidence 56789999966433 444555443
No 14
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=31.65 E-value=19 Score=21.69 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=11.1
Q ss_pred ceeEEEeeccccCcchHHHHhhh
Q psy12841 34 DVHIMIWESYTYASAFADTFKAF 56 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aF 56 (88)
.+++.+|||.+..+.-+..|+.+
T Consensus 50 ~~~~~i~D~~g~~~~~~~~~~~~ 72 (169)
T 3q85_A 50 EVTLIVYDIWEQGDAGGWLQDHC 72 (169)
T ss_dssp EEEEEEECCCCC--------CHH
T ss_pred EEEEEEEECCCccccchhhhhhh
Confidence 57888999977655433345443
No 15
>3hrg_A Uncharacterized protein BT_3980 with actin-like A fold; NP_812891.1, bacteroides thetaiotaomicron BT_3980; HET: MSE UNL; 1.85A {Bacteroides thetaiotaomicron vpi-5482}
Probab=31.41 E-value=25 Score=25.47 Aligned_cols=41 Identities=10% Similarity=0.268 Sum_probs=35.1
Q ss_pred cchHHHHhhhhcCCcccccccCCceeeecccccccccccccC
Q psy12841 47 SAFADTFKAFTRHPVWDLKTFTGLTVCFKNLVLPLLPRMIYR 88 (88)
Q Consensus 47 d~F~~tw~aFt~~~~~~L~~~~gKrVCFk~a~f~lLpRm~~~ 88 (88)
+.=+..-+||..+|.+.. .|+.-+|++.+..+.|.|.-.|+
T Consensus 47 s~~~~L~~~f~~~~~L~~-~y~~v~V~~~~~~~tlVP~~lF~ 87 (257)
T 3hrg_A 47 SLTANLKNVFHESDFLSY-SYKRVNIMIASKRFTMIPLELFE 87 (257)
T ss_dssp CHHHHHHHHHHHCGGGGS-CCSEEEEEECCSCEEEEEGGGCC
T ss_pred hHHHHHHHHHhhChHhcC-CccEEEEEEcCCceeEcChHHCC
Confidence 455777889999998887 99999999999999999986653
No 16
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=30.82 E-value=34 Score=20.22 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=14.2
Q ss_pred ceeEEEeeccccCcchHHHHhhhh
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFT 57 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt 57 (88)
.+++.+|||.+.. .|...|+.+-
T Consensus 51 ~~~~~l~D~~G~~-~~~~~~~~~~ 73 (168)
T 1u8z_A 51 EVQIDILDTAGQE-DYAAIRDNYF 73 (168)
T ss_dssp EEEEEEEECCC----CHHHHHHHH
T ss_pred EEEEEEEECCCcc-hhHHHHHHHh
Confidence 4678899997644 3556666653
No 17
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=30.74 E-value=33 Score=20.13 Aligned_cols=23 Identities=4% Similarity=0.111 Sum_probs=14.9
Q ss_pred ceeEEEeeccccCcchHHHHhhhh
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFT 57 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt 57 (88)
.+.+.+|||.+-.+ |...|+.+-
T Consensus 50 ~~~~~~~D~~G~~~-~~~~~~~~~ 72 (166)
T 2ce2_X 50 TCLLDILDTAGQEE-YSAMRDQYM 72 (166)
T ss_dssp EEEEEEEECCCCSS-CCHHHHHHH
T ss_pred EEEEEEEECCCchh-hhHHHHHhh
Confidence 46788999976443 455666543
No 18
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=30.57 E-value=37 Score=21.20 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=15.5
Q ss_pred ceeEEEeeccccCcchHHHHhhhh
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFT 57 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt 57 (88)
.+.+.+|||.+..+ |...|+.+-
T Consensus 61 ~~~~~l~Dt~G~~~-~~~~~~~~~ 83 (206)
T 2bov_A 61 EVQIDILDTAGQED-YAAIRDNYF 83 (206)
T ss_dssp EEEEEEEECCCTTC-CHHHHHHHH
T ss_pred EEEEEEEcCCChhh-hHHHHHHHH
Confidence 46789999977443 556666654
No 19
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=30.50 E-value=49 Score=19.99 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=17.4
Q ss_pred eeEEEeeccccCcchHHHHhhhhcCC
Q psy12841 35 VHIMIWESYTYASAFADTFKAFTRHP 60 (88)
Q Consensus 35 v~Iv~Wdt~~Y~d~F~~tw~aFt~~~ 60 (88)
+.+.+|||.|- +.|...|+.+-+..
T Consensus 56 ~~~~i~Dt~G~-~~~~~~~~~~~~~~ 80 (177)
T 1wms_A 56 VTMQIWDTAGQ-ERFRSLRTPFYRGS 80 (177)
T ss_dssp EEEEEEECCCC-GGGHHHHGGGGTTC
T ss_pred EEEEEEeCCCc-hhhhhhHHHHHhcC
Confidence 68899999764 34667777665543
No 20
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=30.46 E-value=38 Score=20.28 Aligned_cols=24 Identities=8% Similarity=0.387 Sum_probs=16.0
Q ss_pred ceeEEEeeccccCcchHHHHhhhhc
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFTR 58 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt~ 58 (88)
++.+.+|||.+..+ |...|+.+-+
T Consensus 50 ~~~~~~~Dt~G~~~-~~~~~~~~~~ 73 (171)
T 1upt_A 50 NLKFQVWDLGGLTS-IRPYWRCYYS 73 (171)
T ss_dssp TEEEEEEEECCCGG-GGGGGGGGCT
T ss_pred CEEEEEEECCCChh-hhHHHHHHhc
Confidence 57889999966533 5566665543
No 21
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=30.25 E-value=32 Score=20.52 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=14.9
Q ss_pred ceeEEEeeccccCcchHHHHhhhhc
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFTR 58 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt~ 58 (88)
.+.+.+|||.+.. .|...|+.+-+
T Consensus 54 ~~~~~~~Dt~G~~-~~~~~~~~~~~ 77 (170)
T 1z0j_A 54 LHKFLIWDTAGLE-RFRALAPMYYR 77 (170)
T ss_dssp EEEEEEEEECCSG-GGGGGTHHHHT
T ss_pred EEEEEEEcCCCch-hhhcccHhhCc
Confidence 4678899997753 34455554433
No 22
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=30.22 E-value=27 Score=22.36 Aligned_cols=25 Identities=8% Similarity=-0.011 Sum_probs=17.1
Q ss_pred ceeEEEeeccccCcchHHHHhhhhc
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFTR 58 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt~ 58 (88)
++.+.+|||.+..+.-+..|+.+-+
T Consensus 53 ~~~~~i~Dt~G~~~~~~~~~~~~~~ 77 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRFQLLDRFKS 77 (214)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHHGG
T ss_pred ccEEEEEECCCChhHHHHHHHHHHh
Confidence 5789999997766543337777643
No 23
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=30.15 E-value=30 Score=20.83 Aligned_cols=25 Identities=16% Similarity=0.494 Sum_probs=15.9
Q ss_pred ceeEEEeeccccCcchHHHHhhhhcC
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFTRH 59 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt~~ 59 (88)
.+.+.+|||.+-. .|...|+.+-+.
T Consensus 63 ~~~~~l~Dt~G~~-~~~~~~~~~~~~ 87 (179)
T 1z0f_A 63 KIKLQIWDTAGQE-RFRAVTRSYYRG 87 (179)
T ss_dssp EEEEEEEECTTGG-GTCHHHHHHHHT
T ss_pred EEEEEEEECCCCh-HhhhhHHHHhcc
Confidence 4678999996633 355566655443
No 24
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=29.94 E-value=69 Score=19.40 Aligned_cols=22 Identities=14% Similarity=0.416 Sum_probs=13.7
Q ss_pred eeEEEeeccccCcchHHHHhhhh
Q psy12841 35 VHIMIWESYTYASAFADTFKAFT 57 (88)
Q Consensus 35 v~Iv~Wdt~~Y~d~F~~tw~aFt 57 (88)
+.+.+|||.+-. .|...++.+-
T Consensus 93 ~~~~i~Dt~G~~-~~~~~~~~~~ 114 (208)
T 3clv_A 93 IKFDIWDTAGQE-RYASIVPLYY 114 (208)
T ss_dssp EEEEEEECTTGG-GCTTTHHHHH
T ss_pred eEEEEEECCCcH-HHHHHHHHHh
Confidence 789999996632 3444455443
No 25
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=29.78 E-value=24 Score=21.67 Aligned_cols=22 Identities=9% Similarity=0.437 Sum_probs=11.8
Q ss_pred ceeEEEeeccccCcchHHHHhhh
Q psy12841 34 DVHIMIWESYTYASAFADTFKAF 56 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aF 56 (88)
++.+.+|||.+..+ |...|+.+
T Consensus 61 ~~~~~i~Dt~G~~~-~~~~~~~~ 82 (183)
T 1moz_A 61 NLKLNVWDLGGQTS-IRPYWRCY 82 (183)
T ss_dssp TEEEEEEEEC-----CCTTGGGT
T ss_pred CEEEEEEECCCCHh-HHHHHHHH
Confidence 57888899966543 44445443
No 26
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=29.76 E-value=40 Score=20.02 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=15.0
Q ss_pred ceeEEEeeccccCcchHHHHhhhhc
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFTR 58 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt~ 58 (88)
.+++.+|||.+-. .|...|+.+-+
T Consensus 51 ~~~~~~~D~~G~~-~~~~~~~~~~~ 74 (170)
T 1ek0_A 51 TVKFEIWDTAGQE-RFASLAPXYYR 74 (170)
T ss_dssp EEEEEEEEECCSG-GGGGGHHHHHT
T ss_pred EEEEEEEECCCCh-hhhhhhhhhhc
Confidence 4578899996633 35555655443
No 27
>3skp_A Serotransferrin; iron binding protein, transferrin receptor, TBP metal binding protein; 1.70A {Homo sapiens} PDB: 3v89_B 1suv_E
Probab=29.18 E-value=25 Score=27.37 Aligned_cols=18 Identities=11% Similarity=0.246 Sum_probs=15.6
Q ss_pred CCcccccccCCceeeecc
Q psy12841 59 HPVWDLKTFTGLTVCFKN 76 (88)
Q Consensus 59 ~~~~~L~~~~gKrVCFk~ 76 (88)
.+...|.+.+|||.|+-.
T Consensus 99 s~~~tl~dLrGKksCHtg 116 (342)
T 3skp_A 99 ASDLTWDNLKGKKSCHTA 116 (342)
T ss_dssp CSSCCGGGCTTSEEEESC
T ss_pred CCCCCHHHcCCCCccCCC
Confidence 577899999999999954
No 28
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=29.14 E-value=22 Score=22.20 Aligned_cols=24 Identities=8% Similarity=0.184 Sum_probs=15.8
Q ss_pred eeEEEeeccccCc---------chHHHHhhhhc
Q psy12841 35 VHIMIWESYTYAS---------AFADTFKAFTR 58 (88)
Q Consensus 35 v~Iv~Wdt~~Y~d---------~F~~tw~aFt~ 58 (88)
-++.+|||.|+++ .|...++.+-+
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 101 (195)
T 1svi_A 69 DELHFVDVPGYGFAKVSKSEREAWGRMIETYIT 101 (195)
T ss_dssp TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCccccCHHHHHHHHHHHHHHHh
Confidence 3678899988753 45566665543
No 29
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=29.03 E-value=42 Score=21.26 Aligned_cols=23 Identities=17% Similarity=0.478 Sum_probs=15.5
Q ss_pred ceeEEEeeccccCcchHHHHhhhh
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFT 57 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt 57 (88)
.+.+.+|||.+.. .|...|+.+-
T Consensus 74 ~~~l~l~Dt~G~~-~~~~~~~~~~ 96 (192)
T 2il1_A 74 KIRLQIWDTAGQE-RFNSITSAYY 96 (192)
T ss_dssp EEEEEEEEECCSG-GGHHHHHHHH
T ss_pred EEEEEEEeCCCcH-HHHHHHHHHh
Confidence 4688999997643 4566666554
No 30
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=28.59 E-value=50 Score=20.05 Aligned_cols=25 Identities=24% Similarity=0.583 Sum_probs=17.3
Q ss_pred ceeEEEeeccccCcchHHHHhhhhcC
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFTRH 59 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt~~ 59 (88)
.+.+.+|||.+.. .|...|+.+-+.
T Consensus 69 ~~~~~l~Dt~G~~-~~~~~~~~~~~~ 93 (195)
T 3bc1_A 69 RIHLQLWDTAGLE-RFRSLTTAFFRD 93 (195)
T ss_dssp EEEEEEEEECCSG-GGHHHHHHTTTT
T ss_pred EEEEEEEeCCCcH-HHHHHHHHHHcC
Confidence 5789999997753 466666665443
No 31
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=28.57 E-value=43 Score=19.87 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=15.3
Q ss_pred ceeEEEeeccccCcchHHHHhhhhc
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFTR 58 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt~ 58 (88)
.+.+.+|||.+.. .|...|+.+-+
T Consensus 54 ~~~~~~~D~~G~~-~~~~~~~~~~~ 77 (170)
T 1r2q_A 54 TVKFEIWDTAGQE-RYHSLAPMYYR 77 (170)
T ss_dssp EEEEEEEEECCSG-GGGGGHHHHHT
T ss_pred EEEEEEEeCCCcH-HhhhhhHHhcc
Confidence 5678899996643 34555555543
No 32
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=28.19 E-value=38 Score=20.57 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=15.3
Q ss_pred ceeEEEeeccccCcchHHHHhhhhc
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFTR 58 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt~ 58 (88)
.+.+.+|||.+.. .|...|+.+-+
T Consensus 60 ~~~~~i~Dt~G~~-~~~~~~~~~~~ 83 (181)
T 2efe_B 60 TVKFEIWDTAGQE-RYHSLAPMYYR 83 (181)
T ss_dssp EEEEEEEECCCSG-GGGGGTHHHHT
T ss_pred EEEEEEEeCCCCh-hhhhhhHHHhc
Confidence 4688999996633 35555655543
No 33
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=28.08 E-value=33 Score=21.39 Aligned_cols=23 Identities=9% Similarity=0.453 Sum_probs=13.3
Q ss_pred ceeEEEeeccccCcchHHHHhhhh
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFT 57 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt 57 (88)
++.+.+|||.+..+ |...|+.+-
T Consensus 59 ~~~~~i~Dt~G~~~-~~~~~~~~~ 81 (187)
T 1zj6_A 59 NTRFLMWDIGGQES-LRSSWNTYY 81 (187)
T ss_dssp TEEEEEEECCC-----CGGGHHHH
T ss_pred CEEEEEEECCCCHh-HHHHHHHHh
Confidence 57889999966543 445555544
No 34
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=27.99 E-value=48 Score=19.70 Aligned_cols=23 Identities=9% Similarity=-0.015 Sum_probs=14.9
Q ss_pred ceeEEEeeccccCcchHHHHhhhh
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFT 57 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt 57 (88)
.+.+.+|||.+..+ |...|+.+-
T Consensus 50 ~~~~~~~Dt~G~~~-~~~~~~~~~ 72 (172)
T 2erx_A 50 ICTLQITDTTGSHQ-FPAMQRLSI 72 (172)
T ss_dssp EEEEEEEECCSCSS-CHHHHHHHH
T ss_pred EEEEEEEECCCchh-hHHHHHHhc
Confidence 35688999977543 555665543
No 35
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=27.60 E-value=47 Score=20.58 Aligned_cols=25 Identities=8% Similarity=0.202 Sum_probs=16.9
Q ss_pred CceeEEEeeccccCcchHHHHhhhhc
Q psy12841 33 TDVHIMIWESYTYASAFADTFKAFTR 58 (88)
Q Consensus 33 ~Dv~Iv~Wdt~~Y~d~F~~tw~aFt~ 58 (88)
.++.+.+|||.+.. .|...|+.+-+
T Consensus 61 ~~~~~~i~Dt~G~~-~~~~~~~~~~~ 85 (199)
T 4bas_A 61 GRVAFTVFDMGGAK-KFRGLWETYYD 85 (199)
T ss_dssp TTEEEEEEEECCSG-GGGGGGGGGCT
T ss_pred CCEEEEEEECCCCH-hHHHHHHHHHh
Confidence 35788999997654 35666765543
No 36
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=27.44 E-value=47 Score=20.13 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=16.0
Q ss_pred ceeEEEeeccccCcchHHHHhhhhc
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFTR 58 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt~ 58 (88)
.+.+.+|||.+.. .|...|+.+-+
T Consensus 65 ~~~~~l~Dt~G~~-~~~~~~~~~~~ 88 (187)
T 2a9k_A 65 EVQIDILDTAGQE-DYAAIRDNYFR 88 (187)
T ss_dssp EEEEEEEECCCTT-CCHHHHHHHHH
T ss_pred EEEEEEEECCCCc-ccHHHHHHHhc
Confidence 3578899997644 35666666543
No 37
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=27.43 E-value=65 Score=19.01 Aligned_cols=26 Identities=4% Similarity=-0.009 Sum_probs=16.1
Q ss_pred ceeEEEeeccccCc------chHHHHhhhhcC
Q psy12841 34 DVHIMIWESYTYAS------AFADTFKAFTRH 59 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d------~F~~tw~aFt~~ 59 (88)
+..+.+|||.+..+ .+...|+.+-+.
T Consensus 48 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 45788999966554 255566655443
No 38
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=27.13 E-value=49 Score=19.46 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=14.6
Q ss_pred ceeEEEeeccccCcchHHHHhhhh
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFT 57 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt 57 (88)
.+.+.+|||.+.. .|...|+.+-
T Consensus 50 ~~~~~l~D~~G~~-~~~~~~~~~~ 72 (167)
T 1kao_A 50 PSVLEILDTAGTE-QFASMRDLYI 72 (167)
T ss_dssp EEEEEEEECCCTT-CCHHHHHHHH
T ss_pred EEEEEEEECCCch-hhHHHHHHHh
Confidence 3558899997643 3555665553
No 39
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=26.77 E-value=25 Score=21.61 Aligned_cols=25 Identities=4% Similarity=0.123 Sum_probs=15.7
Q ss_pred ceeEEEeeccccCc---------chHHHHhhhhc
Q psy12841 34 DVHIMIWESYTYAS---------AFADTFKAFTR 58 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d---------~F~~tw~aFt~ 58 (88)
+.++.+|||.++.. .|...++.+-+
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFK 100 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCccccCChhhHHHHHHHHHHHHh
Confidence 34678899988743 35555555443
No 40
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=26.74 E-value=34 Score=20.83 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=14.1
Q ss_pred ceeEEEeeccccCcchHHHHhhhh
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFT 57 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt 57 (88)
.+.+.+|||.+..+ |...|+.+-
T Consensus 52 ~~~~~i~Dt~G~~~-~~~~~~~~~ 74 (186)
T 1mh1_A 52 PVNLGLWDTAGQED-YDRLRPLSY 74 (186)
T ss_dssp EEEEEEECCCCSGG-GTTTGGGGC
T ss_pred EEEEEEEECCCCHh-HHHHHHHhc
Confidence 46777999966533 445555443
No 41
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=26.30 E-value=51 Score=21.15 Aligned_cols=26 Identities=19% Similarity=0.469 Sum_probs=17.5
Q ss_pred ceeEEEeeccccCcchHHHHhhhhcCC
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFTRHP 60 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt~~~ 60 (88)
.+++.+|||.+-. .|...|+.+-+..
T Consensus 77 ~~~l~i~Dt~G~~-~~~~~~~~~~~~~ 102 (201)
T 2hup_A 77 RVKLQIWDTAGQE-RFRTITQSYYRSA 102 (201)
T ss_dssp EEEEEEECCTTCG-GGHHHHHHHHTTC
T ss_pred EEEEEEEECCCcH-hHHHHHHHHHhhC
Confidence 3688999996643 4666777665443
No 42
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=26.08 E-value=57 Score=21.29 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=15.9
Q ss_pred ceeEEEeeccccCcchHHHHhhhhc
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFTR 58 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt~ 58 (88)
+++|.+|||.+. +.|...|+.+-+
T Consensus 74 ~~~l~l~Dt~G~-~~~~~~~~~~~~ 97 (201)
T 2ew1_A 74 KVKLQIWDTAGQ-ERFRSITQSYYR 97 (201)
T ss_dssp EEEEEEEEECCS-GGGHHHHGGGST
T ss_pred EEEEEEEECCCc-HHHHHHHHHHHh
Confidence 468899999664 345666665543
No 43
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=25.64 E-value=33 Score=24.75 Aligned_cols=16 Identities=6% Similarity=0.032 Sum_probs=13.0
Q ss_pred CceeEEEeeccccCcc
Q psy12841 33 TDVHIMIWESYTYASA 48 (88)
Q Consensus 33 ~Dv~Iv~Wdt~~Y~d~ 48 (88)
.+.+|++|||-|+.++
T Consensus 53 ~~~~l~l~DTpG~~~~ 68 (301)
T 1wf3_A 53 GRRQIVFVDTPGLHKP 68 (301)
T ss_dssp TTEEEEEEECCCCCCC
T ss_pred CCcEEEEecCccccch
Confidence 3789999999887763
No 44
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=25.35 E-value=60 Score=19.86 Aligned_cols=24 Identities=21% Similarity=0.523 Sum_probs=16.0
Q ss_pred eeEEEeeccccCcchHHHHhhhhcC
Q psy12841 35 VHIMIWESYTYASAFADTFKAFTRH 59 (88)
Q Consensus 35 v~Iv~Wdt~~Y~d~F~~tw~aFt~~ 59 (88)
+.+.+|||.+-. .|...|+.+-+.
T Consensus 59 ~~~~l~Dt~G~~-~~~~~~~~~~~~ 82 (186)
T 2bme_A 59 VKLQIWDTAGQE-RFRSVTRSYYRG 82 (186)
T ss_dssp EEEEEEEECCSG-GGHHHHHTTSTT
T ss_pred EEEEEEeCCCcH-HHHHHHHHHHhc
Confidence 678899997643 466666665443
No 45
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=25.32 E-value=51 Score=20.78 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=15.0
Q ss_pred CceeEEEeeccccCcchHHHHhhhh
Q psy12841 33 TDVHIMIWESYTYASAFADTFKAFT 57 (88)
Q Consensus 33 ~Dv~Iv~Wdt~~Y~d~F~~tw~aFt 57 (88)
..+.+.+|||.+-. .|...|+.+-
T Consensus 70 ~~~~~~i~Dt~G~~-~~~~~~~~~~ 93 (192)
T 2fg5_A 70 ELHKFLIWDTAGQE-RFHSLAPMYY 93 (192)
T ss_dssp SEEEEEEEEECCSG-GGGGGTHHHH
T ss_pred EEEEEEEEcCCCch-hhHhhhHHhh
Confidence 45688999996633 3455555443
No 46
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=25.18 E-value=46 Score=22.76 Aligned_cols=25 Identities=12% Similarity=0.522 Sum_probs=14.2
Q ss_pred CceeEEEeeccccCcchHHHHhhhhc
Q psy12841 33 TDVHIMIWESYTYASAFADTFKAFTR 58 (88)
Q Consensus 33 ~Dv~Iv~Wdt~~Y~d~F~~tw~aFt~ 58 (88)
..+.+-+|||.+- +-|...++.+-+
T Consensus 60 ~~v~l~iwDtaGq-e~~~~l~~~~~~ 84 (216)
T 4dkx_A 60 RTIRLQLWDTAGL-ERFRSLIPSYIR 84 (216)
T ss_dssp CEEEEEEECCSCT-TTCGGGHHHHHT
T ss_pred eEEEEEEEECCCc-hhhhhHHHHHhc
Confidence 3567789999552 234444444433
No 47
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=25.15 E-value=37 Score=20.46 Aligned_cols=25 Identities=4% Similarity=0.101 Sum_probs=12.1
Q ss_pred ceeEEEeeccccCcc-hHHHHhhhhc
Q psy12841 34 DVHIMIWESYTYASA-FADTFKAFTR 58 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~-F~~tw~aFt~ 58 (88)
.+.+.+|||.+.... +...++.+-+
T Consensus 51 ~~~~~~~D~~g~~~~~~~~~~~~~~~ 76 (175)
T 2nzj_A 51 DTTLVVVDTWEAEKLDKSWSQESCLQ 76 (175)
T ss_dssp EEEEEEECCC-------CHHHHHTTT
T ss_pred EEEEEEEecCCCCccchhhhHHhhcc
Confidence 457888999665442 4445555443
No 48
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=24.48 E-value=56 Score=20.54 Aligned_cols=24 Identities=17% Similarity=0.498 Sum_probs=16.2
Q ss_pred ceeEEEeeccccCcchHHHHhhhhc
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFTR 58 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt~ 58 (88)
.+.+.+|||.+.. .|...|+.+-+
T Consensus 56 ~~~~~l~Dt~G~~-~~~~~~~~~~~ 79 (203)
T 1zbd_A 56 RIKLQIWDTAGLE-RYRTITTAYYR 79 (203)
T ss_dssp EEEEEEEEECCSG-GGHHHHHTTGG
T ss_pred EEEEEEEECCCch-hhcchHHHhhc
Confidence 5688999997754 45666665543
No 49
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=24.39 E-value=37 Score=21.74 Aligned_cols=14 Identities=7% Similarity=-0.002 Sum_probs=10.9
Q ss_pred ceeEEEeeccccCc
Q psy12841 34 DVHIMIWESYTYAS 47 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d 47 (88)
+..+.+|||-|+++
T Consensus 78 ~~~~~l~DtpG~~~ 91 (223)
T 4dhe_A 78 EPVAHLVDLPGYGY 91 (223)
T ss_dssp SCSEEEEECCCCCS
T ss_pred CCcEEEEcCCCCCc
Confidence 46788999987754
No 50
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=24.33 E-value=48 Score=20.91 Aligned_cols=22 Identities=9% Similarity=-0.022 Sum_probs=14.6
Q ss_pred ceeEEEeeccccCcchHHHHhhhh
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFT 57 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt 57 (88)
.+.+.+|||.+..+ ...|+.+-
T Consensus 75 ~~~~~l~Dt~G~~~--~~~~~~~~ 96 (196)
T 2atv_A 75 VVSMEILDTAGQED--TIQREGHM 96 (196)
T ss_dssp EEEEEEEECCCCCC--CHHHHHHH
T ss_pred EEEEEEEECCCCCc--ccchhhhh
Confidence 46788999977665 44555443
No 51
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=24.25 E-value=44 Score=20.82 Aligned_cols=24 Identities=4% Similarity=0.259 Sum_probs=16.4
Q ss_pred ceeEEEeeccccCcchHHHHhhhhc
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFTR 58 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt~ 58 (88)
++.+.+|||.+.. .|...|+.+-+
T Consensus 72 ~~~~~l~Dt~G~~-~~~~~~~~~~~ 95 (208)
T 2yc2_C 72 SVELFLLDTAGSD-LYKEQISQYWN 95 (208)
T ss_dssp EEEEEEEETTTTH-HHHHHHSTTCC
T ss_pred EEEEEEEECCCcH-HHHHHHHHHHh
Confidence 6789999997754 35566665543
No 52
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=23.82 E-value=35 Score=21.05 Aligned_cols=23 Identities=13% Similarity=0.388 Sum_probs=13.9
Q ss_pred ceeEEEeeccccCcchHHHHhhhh
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFT 57 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt 57 (88)
.+.+.+|||.+-. .|...|+.+-
T Consensus 63 ~~~~~i~Dt~G~~-~~~~~~~~~~ 85 (195)
T 1x3s_A 63 KAKLAIWDTAGQE-RFRTLTPSYY 85 (195)
T ss_dssp EEEEEEEEECSSG-GGCCSHHHHH
T ss_pred EEEEEEEeCCCch-hhhhhhHHHh
Confidence 4778999996633 2444454443
No 53
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=23.37 E-value=52 Score=20.50 Aligned_cols=23 Identities=4% Similarity=0.265 Sum_probs=13.9
Q ss_pred CceeEEEeeccccCcchHHHHhhh
Q psy12841 33 TDVHIMIWESYTYASAFADTFKAF 56 (88)
Q Consensus 33 ~Dv~Iv~Wdt~~Y~d~F~~tw~aF 56 (88)
..+++.+|||.+-. .|...|+.+
T Consensus 53 ~~~~~~i~Dt~G~~-~~~~~~~~~ 75 (184)
T 1m7b_A 53 QRIELSLWDTSGSP-YYDNVRPLS 75 (184)
T ss_dssp CEEEEEEEEECCSG-GGTTTGGGG
T ss_pred EEEEEEEEECCCCh-hhhhhHHhh
Confidence 45788999996532 244444443
No 54
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=23.27 E-value=32 Score=22.87 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=12.9
Q ss_pred cccccCCceeeeccccc
Q psy12841 63 DLKTFTGLTVCFKNLVL 79 (88)
Q Consensus 63 ~L~~~~gKrVCFk~a~f 79 (88)
.|+.|-||+||+=--+-
T Consensus 16 ~L~~fvgk~VrivGkV~ 32 (121)
T 3kdf_A 16 MLAQFIDKPVCFVGRLE 32 (121)
T ss_dssp GGGGGTTCEEEEEEEEE
T ss_pred HHHhhCCCeEEEEEEEE
Confidence 47899999999854443
No 55
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=23.25 E-value=41 Score=20.32 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=9.0
Q ss_pred ceeEEEeeccccCcchHHHHhhh
Q psy12841 34 DVHIMIWESYTYASAFADTFKAF 56 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aF 56 (88)
.+.+.+|||.+- +.|...|..+
T Consensus 57 ~~~~~l~Dt~G~-~~~~~~~~~~ 78 (182)
T 1ky3_A 57 VATMQVWDTAGQ-ERFQSLGVAF 78 (182)
T ss_dssp CEEEEEECCC-----------CC
T ss_pred EEEEEEEECCCC-hHhhhhhHHH
Confidence 467889999663 2344455544
No 56
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=23.20 E-value=55 Score=20.25 Aligned_cols=23 Identities=9% Similarity=-0.002 Sum_probs=14.6
Q ss_pred ceeEEEeeccccCcchHHHHhhhh
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFT 57 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt 57 (88)
.+.+.+|||.+..+ |...|+.+-
T Consensus 55 ~~~~~l~Dt~G~~~-~~~~~~~~~ 77 (199)
T 2gf0_A 55 VCTLQITDTTGSHQ-FPAMQRLSI 77 (199)
T ss_dssp EEEEEEEECCGGGS-CHHHHHHHH
T ss_pred EEEEEEEeCCChHH-hHHHHHHhh
Confidence 45788999966433 455665543
No 57
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=23.18 E-value=54 Score=20.47 Aligned_cols=22 Identities=0% Similarity=0.307 Sum_probs=14.0
Q ss_pred ceeEEEeeccccCcchHHHHhhh
Q psy12841 34 DVHIMIWESYTYASAFADTFKAF 56 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aF 56 (88)
++.+.+|||.+-. .|...|+.+
T Consensus 66 ~~~~~l~Dt~G~~-~~~~~~~~~ 87 (190)
T 2h57_A 66 SLSFTVFDMSGQG-RYRNLWEHY 87 (190)
T ss_dssp SCEEEEEEECCST-TTGGGGGGG
T ss_pred CEEEEEEECCCCH-HHHHHHHHH
Confidence 4788999996633 345555544
No 58
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=23.11 E-value=36 Score=20.67 Aligned_cols=22 Identities=18% Similarity=0.522 Sum_probs=9.8
Q ss_pred ceeEEEeeccccCcchHHHHhhh
Q psy12841 34 DVHIMIWESYTYASAFADTFKAF 56 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aF 56 (88)
.+++.+|||.+-. .|...|+.+
T Consensus 59 ~~~~~~~Dt~G~~-~~~~~~~~~ 80 (180)
T 2g6b_A 59 KVKLQMWDTAGQE-RFRSVTHAY 80 (180)
T ss_dssp EEEEEEEECCCC---------CC
T ss_pred EEEEEEEeCCCcH-HHHHHHHHH
Confidence 3578899996633 344444443
No 59
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=22.90 E-value=40 Score=20.85 Aligned_cols=22 Identities=14% Similarity=0.416 Sum_probs=13.9
Q ss_pred ceeEEEeeccccCcchHHHHhhh
Q psy12841 34 DVHIMIWESYTYASAFADTFKAF 56 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aF 56 (88)
++.+.+|||.+..+ |...|+.+
T Consensus 61 ~~~~~~~Dt~G~~~-~~~~~~~~ 82 (186)
T 1ksh_A 61 GFKLNIWDVGGQKS-LRSYWRNY 82 (186)
T ss_dssp TEEEEEEEECCSHH-HHTTGGGG
T ss_pred CEEEEEEECCCCHh-HHHHHHHH
Confidence 57788999966533 44455544
No 60
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=22.79 E-value=46 Score=20.85 Aligned_cols=24 Identities=4% Similarity=0.167 Sum_probs=13.9
Q ss_pred CceeEEEeeccccCcchHHHHhhhh
Q psy12841 33 TDVHIMIWESYTYASAFADTFKAFT 57 (88)
Q Consensus 33 ~Dv~Iv~Wdt~~Y~d~F~~tw~aFt 57 (88)
..+.+.+|||.+- +.|...|..+-
T Consensus 69 ~~~~~~i~Dt~G~-~~~~~~~~~~~ 92 (194)
T 3reg_A 69 EEFILHLWDTAGQ-EEYDRLRPLSY 92 (194)
T ss_dssp EEEEEEEEEECCS-GGGTTTGGGGC
T ss_pred EEEEEEEEECCCc-HHHHHHhHhhc
Confidence 3466789999662 33444554443
No 61
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=22.49 E-value=58 Score=20.22 Aligned_cols=23 Identities=9% Similarity=0.453 Sum_probs=14.2
Q ss_pred ceeEEEeeccccCcchHHHHhhhh
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFT 57 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt 57 (88)
++.+.+|||.+..+ |...|+.+-
T Consensus 64 ~~~~~i~Dt~G~~~-~~~~~~~~~ 86 (181)
T 2h17_A 64 NTRFLMWDIGGQES-LRSSWNTYY 86 (181)
T ss_dssp TEEEEEEEESSSGG-GTCGGGGGG
T ss_pred CEEEEEEECCCCHh-HHHHHHHHh
Confidence 57888999966533 444555443
No 62
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=22.38 E-value=72 Score=21.88 Aligned_cols=24 Identities=4% Similarity=0.138 Sum_probs=16.1
Q ss_pred CceeEEEeeccccC--------cchHHHHhhh
Q psy12841 33 TDVHIMIWESYTYA--------SAFADTFKAF 56 (88)
Q Consensus 33 ~Dv~Iv~Wdt~~Y~--------d~F~~tw~aF 56 (88)
.+.+|.+|||-|+. ....++.++.
T Consensus 68 ~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~ 99 (247)
T 3lxw_A 68 DKCHVEVVDTPDIFSSQVSKTDPGCEERGHCY 99 (247)
T ss_dssp TTEEEEEEECCSCSSTTHHHHSTTSHHHHHHH
T ss_pred CCcEEEEEECCCCCCCCCCcHHHHHHHHHHHH
Confidence 36789999998873 3445555554
No 63
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=22.14 E-value=34 Score=21.46 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=13.0
Q ss_pred ceeEEEeeccccCcchHHHHhhh
Q psy12841 34 DVHIMIWESYTYASAFADTFKAF 56 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aF 56 (88)
.+.+.+|||.|.. .|...|..+
T Consensus 56 ~~~~~l~Dt~G~~-~~~~~~~~~ 77 (207)
T 1vg8_A 56 LVTMQIWDTAGQE-RFQSLGVAF 77 (207)
T ss_dssp EEEEEEEEECSSG-GGSCSCCGG
T ss_pred EEEEEEEeCCCcH-HHHHhHHHH
Confidence 4688999996632 233344433
No 64
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=21.77 E-value=44 Score=20.73 Aligned_cols=22 Identities=5% Similarity=0.125 Sum_probs=8.7
Q ss_pred ceeEEEeeccccCcchHHHHhhh
Q psy12841 34 DVHIMIWESYTYASAFADTFKAF 56 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aF 56 (88)
.+.+.+|||.+..+ |...|+.+
T Consensus 68 ~~~~~l~Dt~G~~~-~~~~~~~~ 89 (190)
T 3con_A 68 TCLLDILDTAGQEE-YSAMRDQY 89 (190)
T ss_dssp EEEEEEEECCC------------
T ss_pred EEEEEEEECCChHH-HHHHHHHh
Confidence 46688999966432 44455444
No 65
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=21.66 E-value=31 Score=20.60 Aligned_cols=12 Identities=25% Similarity=0.659 Sum_probs=9.2
Q ss_pred ceeEEEeecccc
Q psy12841 34 DVHIMIWESYTY 45 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y 45 (88)
.+.+.+|||.+.
T Consensus 51 ~~~~~l~D~~G~ 62 (170)
T 1g16_A 51 KVKLQIWDTAGQ 62 (170)
T ss_dssp EEEEEEECCTTG
T ss_pred EEEEEEEeCCCC
Confidence 468899999653
No 66
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=21.53 E-value=49 Score=20.02 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=13.7
Q ss_pred ceeEEEeeccccCcchHHHHhhh
Q psy12841 34 DVHIMIWESYTYASAFADTFKAF 56 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aF 56 (88)
.+.+.+|||.+-. .|...|+.+
T Consensus 55 ~~~~~~~Dt~G~~-~~~~~~~~~ 76 (178)
T 2hxs_A 55 NVTLQIWDIGGQT-IGGKMLDKY 76 (178)
T ss_dssp EEEEEEEECTTCC-TTCTTHHHH
T ss_pred EEEEEEEECCCCc-cccchhhHH
Confidence 4788999995532 344455544
No 67
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=21.51 E-value=41 Score=21.48 Aligned_cols=23 Identities=4% Similarity=0.371 Sum_probs=12.2
Q ss_pred CceeEEEeeccccCcchHHHHhhh
Q psy12841 33 TDVHIMIWESYTYASAFADTFKAF 56 (88)
Q Consensus 33 ~Dv~Iv~Wdt~~Y~d~F~~tw~aF 56 (88)
.++.+.+|||.+..+ |...|+.+
T Consensus 71 ~~~~~~i~Dt~G~~~-~~~~~~~~ 93 (192)
T 2b6h_A 71 KNICFTVWDVGGQDK-IRPLWRHY 93 (192)
T ss_dssp TTEEEEEEECC------CTTHHHH
T ss_pred CCEEEEEEECCCCHh-HHHHHHHH
Confidence 357889999966543 34445443
No 68
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=21.30 E-value=29 Score=20.67 Aligned_cols=11 Identities=36% Similarity=1.020 Sum_probs=9.0
Q ss_pred ceeEEEeeccc
Q psy12841 34 DVHIMIWESYT 44 (88)
Q Consensus 34 Dv~Iv~Wdt~~ 44 (88)
++.+.+|||.+
T Consensus 53 ~~~~~l~Dt~G 63 (168)
T 1z2a_A 53 DVRLMLWDTAG 63 (168)
T ss_dssp EEEEEEECCTT
T ss_pred EEEEEEEcCCC
Confidence 56889999966
No 69
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=20.75 E-value=71 Score=20.20 Aligned_cols=23 Identities=13% Similarity=0.388 Sum_probs=15.0
Q ss_pred ceeEEEeeccccCcchHHHHhhhh
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFT 57 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt 57 (88)
.+.+.+|||.+..+ |...|+.+-
T Consensus 76 ~~~l~i~Dt~G~~~-~~~~~~~~~ 98 (199)
T 2p5s_A 76 RTVLQLWDTAGQER-FRSIAKSYF 98 (199)
T ss_dssp EEEEEEEECTTCTT-CHHHHHHHH
T ss_pred EEEEEEEECCCCcc-hhhhHHHHH
Confidence 46788999976443 555666543
No 70
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=20.31 E-value=59 Score=21.22 Aligned_cols=24 Identities=8% Similarity=0.261 Sum_probs=14.6
Q ss_pred CceeEEEeeccccCcchHHHHhhhh
Q psy12841 33 TDVHIMIWESYTYASAFADTFKAFT 57 (88)
Q Consensus 33 ~Dv~Iv~Wdt~~Y~d~F~~tw~aFt 57 (88)
..+.+.+|||.+- +.|...|+.+-
T Consensus 73 ~~~~l~i~Dt~G~-~~~~~~~~~~~ 96 (214)
T 3q3j_B 73 QRVELSLWDTSGS-PYYDNVRPLCY 96 (214)
T ss_dssp CEEEEEEEEECCS-GGGTTTGGGGC
T ss_pred EEEEEEEEECCCC-HhHHHHHHHHc
Confidence 3477889999663 23445555443
No 71
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=20.25 E-value=53 Score=20.59 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=14.0
Q ss_pred CCcccccccCCceeeec
Q psy12841 59 HPVWDLKTFTGLTVCFK 75 (88)
Q Consensus 59 ~~~~~L~~~~gKrVCFk 75 (88)
.++-++.|..||||+.-
T Consensus 105 ~~i~~~~dL~g~~i~~~ 121 (246)
T 4eq9_A 105 SSIKSLDDIGGKSTEVV 121 (246)
T ss_dssp CSCSSGGGCTTCEEEEC
T ss_pred CCCCCHHHhCCCEEEEe
Confidence 36778899999999874
No 72
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=20.01 E-value=65 Score=21.02 Aligned_cols=23 Identities=4% Similarity=0.265 Sum_probs=14.1
Q ss_pred CceeEEEeeccccCcchHHHHhhh
Q psy12841 33 TDVHIMIWESYTYASAFADTFKAF 56 (88)
Q Consensus 33 ~Dv~Iv~Wdt~~Y~d~F~~tw~aF 56 (88)
..+++.+|||.+.. .|...|+.+
T Consensus 74 ~~~~l~i~Dt~G~~-~~~~~~~~~ 96 (205)
T 1gwn_A 74 QRIELSLWDTSGSP-YYDNVRPLS 96 (205)
T ss_dssp SEEEEEEEEECCSG-GGTTTGGGG
T ss_pred EEEEEEEEeCCCcH-hhhHHHHhh
Confidence 35788999996632 244445443
Done!