Query psy12841
Match_columns 88
No_of_seqs 44 out of 46
Neff 2.7
Searched_HMMs 13730
Date Fri Aug 16 21:10:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12841.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12841hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ew1a1 c.37.1.8 (A:4-174) Rab 47.1 7.3 0.00053 23.2 2.8 26 33-59 52-77 (171)
2 d1svsa1 c.37.1.8 (A:32-60,A:18 43.5 12 0.00091 21.8 3.5 45 14-62 18-68 (195)
3 d2g6ba1 c.37.1.8 (A:58-227) Ra 43.5 4.7 0.00034 24.1 1.5 27 33-60 54-80 (170)
4 d1zd9a1 c.37.1.8 (A:18-181) AD 43.1 13 0.00092 21.9 3.5 29 33-62 45-73 (164)
5 d1eh3a_ c.94.1.2 (A:) Lactofer 42.5 5.1 0.00037 28.5 1.8 21 57-77 96-116 (324)
6 d1ce2a1 c.94.1.2 (A:1-333) Lac 40.4 5.9 0.00043 28.5 1.8 20 58-77 100-119 (333)
7 d2bcgy1 c.37.1.8 (Y:3-196) GTP 38.9 4.9 0.00036 24.8 1.0 27 33-60 53-79 (194)
8 d3raba_ c.37.1.8 (A:) Rab3a {R 38.2 12 0.00087 22.2 2.8 27 33-60 52-78 (169)
9 d2b6da1 c.94.1.2 (A:342-685) L 34.6 8.1 0.00059 27.5 1.8 20 58-77 101-120 (344)
10 d2hava1 c.94.1.2 (A:340-664) T 33.8 8.6 0.00063 27.4 1.8 19 59-77 97-115 (325)
11 d1h76a2 c.94.1.2 (A:342-687) T 33.2 8.5 0.00062 27.5 1.7 18 60-77 102-119 (346)
12 d2fu5c1 c.37.1.8 (C:3-175) Rab 30.3 8.1 0.00059 23.1 1.0 24 34-58 54-77 (173)
13 d1g16a_ c.37.1.8 (A:) Rab-rela 30.0 8.1 0.00059 22.8 0.9 24 34-58 50-73 (166)
14 d2bmea1 c.37.1.8 (A:6-179) Rab 29.8 19 0.0014 21.2 2.7 28 34-62 53-80 (174)
15 d1x3sa1 c.37.1.8 (A:2-178) Rab 29.0 11 0.00078 22.6 1.4 28 33-61 54-81 (177)
16 d1wp0a1 c.47.1.10 (A:138-297) 28.4 11 0.00078 21.6 1.3 14 59-72 10-23 (160)
17 d1ieja_ c.94.1.2 (A:) Ovotrans 26.9 13 0.00097 26.6 1.8 41 34-76 70-115 (329)
18 d1gv8a_ c.94.1.2 (A:) Ovotrans 25.4 16 0.0011 23.8 1.8 16 61-76 13-28 (159)
19 d2gjsa1 c.37.1.8 (A:91-258) Ra 24.3 16 0.0012 21.6 1.6 25 33-58 46-70 (168)
20 d2pi2e1 b.40.4.3 (E:3-117) Rep 24.1 14 0.001 22.7 1.3 14 63-76 14-27 (115)
21 d1z0fa1 c.37.1.8 (A:8-173) Rab 23.9 21 0.0015 20.9 2.1 27 33-60 51-77 (166)
22 d1rxwa2 c.120.1.2 (A:3-219) Fl 21.8 17 0.0012 23.6 1.4 16 60-75 10-25 (217)
23 d2onsa1 c.94.1.1 (A:32-342) Mo 21.8 22 0.0016 20.4 1.8 32 34-65 1-33 (311)
24 d1qxha_ c.47.1.10 (A:) Thiol p 20.9 17 0.0013 22.2 1.3 16 58-73 33-48 (164)
25 d1e2ya_ c.47.1.10 (A:) Trypare 20.1 11 0.00081 22.9 0.2 13 60-72 24-36 (167)
26 d2bbya_ a.4.5.15 (A:) DNA-bind 20.0 8 0.00058 22.9 -0.5 21 50-70 11-31 (69)
No 1
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.11 E-value=7.3 Score=23.23 Aligned_cols=26 Identities=19% Similarity=0.502 Sum_probs=18.4
Q ss_pred CceeEEEeeccccCcchHHHHhhhhcC
Q psy12841 33 TDVHIMIWESYTYASAFADTFKAFTRH 59 (88)
Q Consensus 33 ~Dv~Iv~Wdt~~Y~d~F~~tw~aFt~~ 59 (88)
..+.+.+|||.| .+.|..+|+.+-+.
T Consensus 52 ~~~~l~i~Dt~G-~e~~~~~~~~~~~~ 77 (171)
T d2ew1a1 52 EKVKLQIWDTAG-QERFRSITQSYYRS 77 (171)
T ss_dssp EEEEEEEEEECC-SGGGHHHHGGGSTT
T ss_pred EEEEEEEEECCC-chhhHHHHHHHHhc
Confidence 346688999966 35678888876544
No 2
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=43.55 E-value=12 Score=21.77 Aligned_cols=45 Identities=7% Similarity=0.014 Sum_probs=29.4
Q ss_pred hhHhHhhhhhcCCCCCCcC------CceeEEEeeccccCcchHHHHhhhhcCCcc
Q psy12841 14 FFNLYASQHVNASHPDVFS------TDVHIMIWESYTYASAFADTFKAFTRHPVW 62 (88)
Q Consensus 14 F~NLY~S~HvN~S~~~~F~------~Dv~Iv~Wdt~~Y~d~F~~tw~aFt~~~~~ 62 (88)
++++|...|.+.. ++. .++.+-+|||.+ ...|...|+.+-+....
T Consensus 18 l~~r~~~~~~~t~---~~~~~~~~~~~~~~~i~D~~G-q~~~~~~~~~~~~~~~~ 68 (195)
T d1svsa1 18 IVKQMKIIHEAGT---GIVETHFTFKDLHFKMFDVGG-QRSERKKWIHCFEGVTA 68 (195)
T ss_dssp HHHHHHHHHSCCC---SEEEEEEEETTEEEEEEEECC-SGGGGGGGGGGCTTCSE
T ss_pred HHHHHhhCCCCCc---cEEEEEEEeeeeeeeeecccc-ccccccchhhcccCCce
Confidence 5677777776655 233 246677899955 34578888887665543
No 3
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.51 E-value=4.7 Score=24.12 Aligned_cols=27 Identities=19% Similarity=0.471 Sum_probs=12.3
Q ss_pred CceeEEEeeccccCcchHHHHhhhhcCC
Q psy12841 33 TDVHIMIWESYTYASAFADTFKAFTRHP 60 (88)
Q Consensus 33 ~Dv~Iv~Wdt~~Y~d~F~~tw~aFt~~~ 60 (88)
..+.+-+|||.+= +.|..+|+.+.+..
T Consensus 54 ~~~~l~i~Dt~G~-e~~~~~~~~~~~~~ 80 (170)
T d2g6ba1 54 VKVKLQMWDTAGQ-ERFRSVTHAYYRDA 80 (170)
T ss_dssp EEEEEEEEECCCC---------CCGGGC
T ss_pred cEEEEEEEECCCc-hhhHHHHHHhhcCC
Confidence 3467789999663 44566777665543
No 4
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}
Probab=43.08 E-value=13 Score=21.92 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=20.1
Q ss_pred CceeEEEeeccccCcchHHHHhhhhcCCcc
Q psy12841 33 TDVHIMIWESYTYASAFADTFKAFTRHPVW 62 (88)
Q Consensus 33 ~Dv~Iv~Wdt~~Y~d~F~~tw~aFt~~~~~ 62 (88)
.++.+.+||+.+ ...|...|+.|-+....
T Consensus 45 ~~~~~~i~D~~G-~~~~~~~~~~~~~~~~~ 73 (164)
T d1zd9a1 45 GNVTIKLWDIGG-QPRFRSMWERYCRGVSA 73 (164)
T ss_dssp TTEEEEEEEECC-SHHHHTTHHHHHTTCSE
T ss_pred eeEEEEEeeccc-cccccccccccccccch
Confidence 567888999965 34577778776655543
No 5
>d1eh3a_ c.94.1.2 (A:) Lactoferrin {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.52 E-value=5.1 Score=28.55 Aligned_cols=21 Identities=24% Similarity=0.566 Sum_probs=16.6
Q ss_pred hcCCcccccccCCceeeeccc
Q psy12841 57 TRHPVWDLKTFTGLTVCFKNL 77 (88)
Q Consensus 57 t~~~~~~L~~~~gKrVCFk~a 77 (88)
.+...+.|.|..|||.||-..
T Consensus 96 kk~s~~~l~dLkGKk~Ch~g~ 116 (324)
T d1eh3a_ 96 KKGGSFQLNELQGLKSCHTGL 116 (324)
T ss_dssp ETTCCCCTTCCTTCEEEESCT
T ss_pred ccCCccchhhccCceeeecCC
Confidence 345567899999999999654
No 6
>d1ce2a1 c.94.1.2 (A:1-333) Lactoferrin {Domestic water buffalo (Bubalus arnee bubalis) [TaxId: 89462]}
Probab=40.39 E-value=5.9 Score=28.46 Aligned_cols=20 Identities=20% Similarity=0.506 Sum_probs=16.0
Q ss_pred cCCcccccccCCceeeeccc
Q psy12841 58 RHPVWDLKTFTGLTVCFKNL 77 (88)
Q Consensus 58 ~~~~~~L~~~~gKrVCFk~a 77 (88)
+...+.|++.+|||.|+-..
T Consensus 100 k~s~~~l~dLkGKksChtg~ 119 (333)
T d1ce2a1 100 KGSNFQLDQLQGRNSCHTGL 119 (333)
T ss_dssp TTCCCCGGGCTTCEEEESCT
T ss_pred cCCccchhhccCCceeecCC
Confidence 45566899999999999653
No 7
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.89 E-value=4.9 Score=24.81 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=18.5
Q ss_pred CceeEEEeeccccCcchHHHHhhhhcCC
Q psy12841 33 TDVHIMIWESYTYASAFADTFKAFTRHP 60 (88)
Q Consensus 33 ~Dv~Iv~Wdt~~Y~d~F~~tw~aFt~~~ 60 (88)
.++.+.+|||.|-. .|...|+.+-+..
T Consensus 53 ~~~~l~i~Dt~G~e-~~~~~~~~~~~~a 79 (194)
T d2bcgy1 53 KTVKLQIWDTAGQE-RFRTITSSYYRGS 79 (194)
T ss_dssp EEEEEEEECCTTTT-TTTCCCGGGGTTC
T ss_pred EEEEEEEEECCCch-hhHHHHHHHhccC
Confidence 47788899996643 4666777765543
No 8
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=38.19 E-value=12 Score=22.22 Aligned_cols=27 Identities=15% Similarity=0.431 Sum_probs=17.6
Q ss_pred CceeEEEeeccccCcchHHHHhhhhcCC
Q psy12841 33 TDVHIMIWESYTYASAFADTFKAFTRHP 60 (88)
Q Consensus 33 ~Dv~Iv~Wdt~~Y~d~F~~tw~aFt~~~ 60 (88)
..+.+.+|||.+ .+-|..+|+.+-+..
T Consensus 52 ~~~~l~~wDt~G-~e~~~~~~~~~~~~a 78 (169)
T d3raba_ 52 KRIKLQIWDTAG-QERYRTITTAYYRGA 78 (169)
T ss_dssp EEEEEEEEEECC-SGGGHHHHHTTTTTC
T ss_pred ceEEEEEEECCC-chhhHHHHHHHHhcC
Confidence 346677899955 345777887765443
No 9
>d2b6da1 c.94.1.2 (A:342-685) Lactoferrin {Cow (Bos taurus) [TaxId: 9913]}
Probab=34.58 E-value=8.1 Score=27.54 Aligned_cols=20 Identities=5% Similarity=0.167 Sum_probs=16.4
Q ss_pred cCCcccccccCCceeeeccc
Q psy12841 58 RHPVWDLKTFTGLTVCFKNL 77 (88)
Q Consensus 58 ~~~~~~L~~~~gKrVCFk~a 77 (88)
+.++..|.+.+|||.|+-..
T Consensus 101 ~s~~~~~~dLkGKksCHtG~ 120 (344)
T d2b6da1 101 ANEGLTWNSLKDKKSCHTAV 120 (344)
T ss_dssp TSTTCCGGGCTTSEEEESCT
T ss_pred CCCcccHHHHhhcceeccCC
Confidence 35678899999999998753
No 10
>d2hava1 c.94.1.2 (A:340-664) Transferrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=33.83 E-value=8.6 Score=27.37 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=15.6
Q ss_pred CCcccccccCCceeeeccc
Q psy12841 59 HPVWDLKTFTGLTVCFKNL 77 (88)
Q Consensus 59 ~~~~~L~~~~gKrVCFk~a 77 (88)
.++..+++.+|||.|+-..
T Consensus 97 s~~~~~~dLkGKksCHtG~ 115 (325)
T d2hava1 97 ASDLTWDNLKGKKSCHTAV 115 (325)
T ss_dssp SSSCCGGGCTTCEEEESCT
T ss_pred CCcCCHHHHhccceeccCC
Confidence 4567899999999999653
No 11
>d1h76a2 c.94.1.2 (A:342-687) Transferrin {Pig (Sus scrofa) [TaxId: 9823]}
Probab=33.19 E-value=8.5 Score=27.45 Aligned_cols=18 Identities=17% Similarity=0.473 Sum_probs=14.5
Q ss_pred CcccccccCCceeeeccc
Q psy12841 60 PVWDLKTFTGLTVCFKNL 77 (88)
Q Consensus 60 ~~~~L~~~~gKrVCFk~a 77 (88)
+...+.+.+|||.|+-..
T Consensus 102 ~~~~~~dLkGKksChtg~ 119 (346)
T d1h76a2 102 PDLNWNNLKGKKSCHTAV 119 (346)
T ss_dssp TTCSGGGCTTCCEEESCT
T ss_pred CCCCHHHhccCccccCCC
Confidence 345899999999999654
No 12
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.34 E-value=8.1 Score=23.13 Aligned_cols=24 Identities=21% Similarity=0.524 Sum_probs=10.7
Q ss_pred ceeEEEeeccccCcchHHHHhhhhc
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFTR 58 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt~ 58 (88)
++.+-+|||.+ .+.|..+|+.+-+
T Consensus 54 ~~~l~i~D~~G-~e~~~~~~~~~~~ 77 (173)
T d2fu5c1 54 RIKLQIWDTAG-QERFRTITTAYYR 77 (173)
T ss_dssp EEEEEEEEC----------CCTTTT
T ss_pred EEEEEEEECCC-chhhHHHHHHhcc
Confidence 56777899965 3456667766644
No 13
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.98 E-value=8.1 Score=22.81 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=13.4
Q ss_pred ceeEEEeeccccCcchHHHHhhhhc
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFTR 58 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt~ 58 (88)
.+.+.+|||.+ .+.|..+|+.+-+
T Consensus 50 ~~~~~i~Dt~G-~~~~~~~~~~~~~ 73 (166)
T d1g16a_ 50 KVKLQIWDTAG-QERFRTITTAYYR 73 (166)
T ss_dssp EEEEEEECCTT-GGGTSCCCHHHHT
T ss_pred EEEEEEEECCC-chhhHHHHHHHHh
Confidence 34566899955 2344455555443
No 14
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.83 E-value=19 Score=21.19 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=18.8
Q ss_pred ceeEEEeeccccCcchHHHHhhhhcCCcc
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFTRHPVW 62 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt~~~~~ 62 (88)
.+.+.+|||.+ .+.|...|+.+.++...
T Consensus 53 ~~~~~i~D~~G-~~~~~~~~~~~~~~~~~ 80 (174)
T d2bmea1 53 YVKLQIWDTAG-QERFRSVTRSYYRGAAG 80 (174)
T ss_dssp EEEEEEEEECC-SGGGHHHHHTTSTTCSE
T ss_pred ceeEEEEECCC-chhhhhhHHHHhhhCCE
Confidence 45677899965 44577788877665543
No 15
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.96 E-value=11 Score=22.63 Aligned_cols=28 Identities=14% Similarity=0.370 Sum_probs=17.7
Q ss_pred CceeEEEeeccccCcchHHHHhhhhcCCc
Q psy12841 33 TDVHIMIWESYTYASAFADTFKAFTRHPV 61 (88)
Q Consensus 33 ~Dv~Iv~Wdt~~Y~d~F~~tw~aFt~~~~ 61 (88)
..+.+.+|||.+ .+-+...|+.|.+...
T Consensus 54 ~~~~~~i~Dt~G-~~~~~~~~~~~~~~~~ 81 (177)
T d1x3sa1 54 NKAKLAIWDTAG-QERFRTLTPSYYRGAQ 81 (177)
T ss_dssp EEEEEEEEEECS-SGGGCCSHHHHHTTCC
T ss_pred cccEEEEEECCC-chhhHHHHHHHHhcCC
Confidence 356789999955 2344556777765543
No 16
>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.39 E-value=11 Score=21.60 Aligned_cols=14 Identities=14% Similarity=-0.023 Sum_probs=10.5
Q ss_pred CCcccccccCCcee
Q psy12841 59 HPVWDLKTFTGLTV 72 (88)
Q Consensus 59 ~~~~~L~~~~gKrV 72 (88)
-..++|++|+||.|
T Consensus 10 G~~vsl~d~~GK~v 23 (160)
T d1wp0a1 10 GERKTDKDYLGQWL 23 (160)
T ss_dssp SCEEEGGGGTTSEE
T ss_pred CCEEcHHHhCCCEE
Confidence 34678888888875
No 17
>d1ieja_ c.94.1.2 (A:) Ovotransferrin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=26.94 E-value=13 Score=26.61 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=25.9
Q ss_pred ceeEEEeeccccCc-----chHHHHhhhhcCCcccccccCCceeeecc
Q psy12841 34 DVHIMIWESYTYAS-----AFADTFKAFTRHPVWDLKTFTGLTVCFKN 76 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d-----~F~~tw~aFt~~~~~~L~~~~gKrVCFk~ 76 (88)
+..-|+-|.|+..+ ++...+. .+.+.+.+.+..|||.|+-.
T Consensus 70 ~L~pi~~E~y~~~~~~~~~y~aVavv--kk~s~~~~~~LkGkksCHtG 115 (329)
T d1ieja_ 70 KLKPIAAEVYEHTEGSTTSYYAVAVV--KKGTEFTVNDLQGKTSCHTG 115 (329)
T ss_dssp CCEEEEEEEEECSSSEESEEEEEEEE--ETTCCCCGGGCTTCEEEESC
T ss_pred CCEEEEEEeecCCCCCceEEEEEEEE--ecCCccchhhccCCcccccC
Confidence 45566677654332 3333333 24566789999999999954
No 18
>d1gv8a_ c.94.1.2 (A:) Ovotransferrin {Duck (Anas platyrhynchos) [TaxId: 8839]}
Probab=25.41 E-value=16 Score=23.85 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=13.1
Q ss_pred cccccccCCceeeecc
Q psy12841 61 VWDLKTFTGLTVCFKN 76 (88)
Q Consensus 61 ~~~L~~~~gKrVCFk~ 76 (88)
.+.|.+.+|||-|+-.
T Consensus 13 ~~~l~~LkGkksCHtG 28 (159)
T d1gv8a_ 13 DFMIKDLRGKTSCHTG 28 (159)
T ss_dssp CCCGGGCTTCEEEESC
T ss_pred CCCHhHcCCCCcccCC
Confidence 4578999999999754
No 19
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.31 E-value=16 Score=21.62 Aligned_cols=25 Identities=4% Similarity=0.016 Sum_probs=12.5
Q ss_pred CceeEEEeeccccCcchHHHHhhhhc
Q psy12841 33 TDVHIMIWESYTYASAFADTFKAFTR 58 (88)
Q Consensus 33 ~Dv~Iv~Wdt~~Y~d~F~~tw~aFt~ 58 (88)
.++.+.+|||.+= +.|...|+.+-+
T Consensus 46 ~~~~l~i~D~~g~-e~~~~~~~~~~~ 70 (168)
T d2gjsa1 46 EEASLMVYDIWEQ-DGGRWLPGHCMA 70 (168)
T ss_dssp EEEEEEEEECC--------CHHHHHT
T ss_pred cccceeeeecccc-cccceecccchh
Confidence 4688899999552 344555555533
No 20
>d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14) subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.11 E-value=14 Score=22.68 Aligned_cols=14 Identities=36% Similarity=0.612 Sum_probs=11.4
Q ss_pred cccccCCceeeecc
Q psy12841 63 DLKTFTGLTVCFKN 76 (88)
Q Consensus 63 ~L~~~~gKrVCFk~ 76 (88)
.|+.|.||+||+=-
T Consensus 14 ~L~~~~Gk~V~ivG 27 (115)
T d2pi2e1 14 MLAQFIDKPVCFVG 27 (115)
T ss_dssp GGGGSTTCEEEEEE
T ss_pred HHHhhCCCeEEEEE
Confidence 57899999999743
No 21
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.94 E-value=21 Score=20.92 Aligned_cols=27 Identities=15% Similarity=0.482 Sum_probs=18.2
Q ss_pred CceeEEEeeccccCcchHHHHhhhhcCC
Q psy12841 33 TDVHIMIWESYTYASAFADTFKAFTRHP 60 (88)
Q Consensus 33 ~Dv~Iv~Wdt~~Y~d~F~~tw~aFt~~~ 60 (88)
.++.+.+|||.+ .+.|..+|+.+.+..
T Consensus 51 ~~~~l~i~D~~g-~~~~~~~~~~~~~~~ 77 (166)
T d1z0fa1 51 QKIKLQIWDTAG-QERFRAVTRSYYRGA 77 (166)
T ss_dssp EEEEEEEEECTT-GGGTCHHHHHHHHTC
T ss_pred EEEEEEEeccCC-chhHHHHHHHHhcCC
Confidence 356888999965 345677777765543
No 22
>d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=21.82 E-value=17 Score=23.65 Aligned_cols=16 Identities=19% Similarity=0.383 Sum_probs=13.4
Q ss_pred CcccccccCCceeeec
Q psy12841 60 PVWDLKTFTGLTVCFK 75 (88)
Q Consensus 60 ~~~~L~~~~gKrVCFk 75 (88)
..++|.+|.||||+..
T Consensus 10 ~~~~l~~l~Gk~vAID 25 (217)
T d1rxwa2 10 EEVELEYFSGKKIAVD 25 (217)
T ss_dssp EECCGGGGTTCEEEEE
T ss_pred cccCHHHhCCCEEEEE
Confidence 3468999999999875
No 23
>d2onsa1 c.94.1.1 (A:32-342) Molybdate-binding protein, ModA {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=21.80 E-value=22 Score=20.45 Aligned_cols=32 Identities=16% Similarity=0.387 Sum_probs=24.3
Q ss_pred ceeEEEeeccccCcchHHHHhhhhc-CCccccc
Q psy12841 34 DVHIMIWESYTYASAFADTFKAFTR-HPVWDLK 65 (88)
Q Consensus 34 Dv~Iv~Wdt~~Y~d~F~~tw~aFt~-~~~~~L~ 65 (88)
||.|-+|=...+.+.|.+.=++|.+ ||-++++
T Consensus 1 ~v~L~v~~ags~~~~~~~~~~~Fe~~~P~I~V~ 33 (311)
T d2onsa1 1 NVKLKVFHAGSLTEPMKAFKRAFEEKHPNVEVQ 33 (311)
T ss_dssp CEEEEEEEEGGGHHHHHHHHHHHHHHCTTEEEE
T ss_pred CcEEEEEeccCcHHHHHHHHHHHHHHCcCcEEE
Confidence 5778888777777888888888865 6776654
No 24
>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}
Probab=20.89 E-value=17 Score=22.22 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=12.2
Q ss_pred cCCcccccccCCceee
Q psy12841 58 RHPVWDLKTFTGLTVC 73 (88)
Q Consensus 58 ~~~~~~L~~~~gKrVC 73 (88)
+...++|++|.||.|-
T Consensus 33 ~g~~vsLsd~~GK~vv 48 (164)
T d1qxha_ 33 DLSDVTLGQFAGKRKV 48 (164)
T ss_dssp TSCEEEGGGGTTSEEE
T ss_pred CCCEEeHHHhCCCeEE
Confidence 4566789999999753
No 25
>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}
Probab=20.12 E-value=11 Score=22.94 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=10.0
Q ss_pred CcccccccCCcee
Q psy12841 60 PVWDLKTFTGLTV 72 (88)
Q Consensus 60 ~~~~L~~~~gKrV 72 (88)
..++|+||.||.|
T Consensus 24 ~~vsLsd~~GK~v 36 (167)
T d1e2ya_ 24 KKVSLSSYKGKYV 36 (167)
T ss_dssp EEEEGGGGTTSEE
T ss_pred cEEeHHHHCCCeE
Confidence 3578899999864
No 26
>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.00 E-value=8 Score=22.90 Aligned_cols=21 Identities=29% Similarity=0.597 Sum_probs=17.2
Q ss_pred HHHHhhhhcCCcccccccCCc
Q psy12841 50 ADTFKAFTRHPVWDLKTFTGL 70 (88)
Q Consensus 50 ~~tw~aFt~~~~~~L~~~~gK 70 (88)
...+++|.+||-|+||+....
T Consensus 11 d~lF~~Fek~~ywsiK~L~~~ 31 (69)
T d2bbya_ 11 DMLFSAFEKHQYYNLKDLVDI 31 (69)
T ss_dssp HHHHHHHHHCSCBCHHHHHHH
T ss_pred HHHHHHHhhcCCCCHHHHHHH
Confidence 457899999999999987543
Done!