RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12841
         (88 letters)



>gnl|CDD|237575 PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional.
          Length = 576

 Score = 27.9 bits (63), Expect = 0.61
 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 19  ASQHVNASHPDVFSTDVHIMIWESYT---YASAFADTFKAFTRHPVWDLKTFTGLTVCFK 75
           A+Q     +PD F  D+    WES+T            +  T       KT TG  V FK
Sbjct: 322 AAQSPEFGNPDKFCGDIPESNWESFTVTTKDPKILPYIERITGRDPGSGKTVTGGIVTFK 381


>gnl|CDD|143416 cd07098, ALDH_F15-22, Aldehyde dehydrogenase family 15A1 and
           22A1-like.  Aldehyde dehydrogenase family members
           ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1
           (Arabidopsis thaliana, EC=1.2.1.3), and similar
           sequences, are in this CD. Significant improvement of
           stress tolerance in tobacco plants was observed by
           overexpressing the ALDH22A1 gene from maize (Zea mays)
           and was accompanied by a reduction of malondialdehyde
           derived from cellular lipid peroxidation.
          Length = 465

 Score = 27.3 bits (61), Expect = 1.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 49  FADTFKAFTRHPVWDLKTFTG 69
             +T +A T HPV D  TF G
Sbjct: 190 LPETAEALTSHPVIDHITFIG 210


>gnl|CDD|215512 PLN02950, PLN02950, 4-alpha-glucanotransferase.
          Length = 909

 Score = 26.6 bits (59), Expect = 1.7
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 5/30 (16%)

Query: 33  TDVHIMIWESYTYASAFADTFKAFTRHPVW 62
           T VH M W+SY Y+S        F  HP++
Sbjct: 308 TSVHGMWWDSYPYSS-----LSVFALHPLY 332


>gnl|CDD|216954 pfam02270, TFIIF_beta, Transcription initiation factor IIF, beta
           subunit.  Accurate transcription in vivo requires at
           least six general transcription initiation factors, in
           addition to RNA polymerase II. Transcription initiation
           factor IIF (TFIIF) is a tetramer of two beta subunits
           associate with two alpha subunits which interacts
           directly with RNA polymerase II. The beta subunit of
           TFIIF is required for recruitment of RNA polymerase II
           onto the promoter.
          Length = 259

 Score = 26.2 bits (58), Expect = 2.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 53  FKAFTRHPVWDLKTFTGLT 71
           FKAF +H  W LK     T
Sbjct: 206 FKAFEKHQYWSLKDLKERT 224


>gnl|CDD|215375 PLN02697, PLN02697, lycopene epsilon cyclase.
          Length = 529

 Score = 25.2 bits (55), Expect = 5.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 51  DTFKAFTRHPVWDLKTFTGLTVCFKNLVL 79
             F  F R P W  + F G T+   +L+L
Sbjct: 464 TFFVTFFRLPKWMWQGFLGSTLSSVDLIL 492


>gnl|CDD|238244 cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme
          catalyses the interconversion of D-ribulose 5-phosphate
          (Ru5P) into D-xylulose 5-phosphate, as part of the
          Calvin cycle (reductive pentose phosphate pathway) in
          chloroplasts and in the oxidative pentose phosphate
          pathway. In the Calvin cycle Ru5P is phosphorylated by
          phosphoribulose kinase to ribulose-1,5-bisphosphate,
          which in turn is used by RubisCO
          (ribulose-1,5-bisphosphate carboxylase/oxygenase) to
          incorporate CO2 as the central step in carbohydrate
          synthesis.
          Length = 211

 Score = 24.7 bits (55), Expect = 6.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 34 DVHIMIWESYTYASAFAD 51
          DVH+M+     Y  AFA 
Sbjct: 61 DVHLMVENPERYIEAFAK 78


>gnl|CDD|237464 PRK13670, PRK13670, hypothetical protein; Provisional.
          Length = 388

 Score = 24.8 bits (55), Expect = 6.9
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 13  DFFNLYASQHVNASHPDVFSTDVHIMIWESYTYASAFADTFKAFTRHPVWDLKT 66
           + F   A        P+ F   +  ++ +  +Y  A ++  + F     +DL T
Sbjct: 108 EDFQKIAKILNE--EPEEFKKLLKELLKKGLSYPQARSEALEEFLGEINFDLST 159


>gnl|CDD|227770 COG5483, COG5483, Uncharacterized conserved protein [Function
           unknown].
          Length = 289

 Score = 24.5 bits (53), Expect = 8.8
 Identities = 6/29 (20%), Positives = 13/29 (44%)

Query: 58  RHPVWDLKTFTGLTVCFKNLVLPLLPRMI 86
           R  +  LK +  L   ++   +   PR++
Sbjct: 217 RKDLRTLKDYEKLFEEYEKTTIKDNPRLL 245


>gnl|CDD|240268 PTZ00104, PTZ00104, S-adenosylmethionine synthase; Provisional.
          Length = 398

 Score = 24.6 bits (54), Expect = 8.8
 Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 5/23 (21%)

Query: 7  MYHHFCDFFNLYASQHVNASHPD 29
             HF     L+ S+ V+  HPD
Sbjct: 7  SVGHF-----LFTSESVSEGHPD 24


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.331    0.138    0.465 

Gapped
Lambda     K      H
   0.267   0.0725    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,373,030
Number of extensions: 329561
Number of successful extensions: 367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 12
Length of query: 88
Length of database: 10,937,602
Length adjustment: 56
Effective length of query: 32
Effective length of database: 8,453,778
Effective search space: 270520896
Effective search space used: 270520896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 53 (24.2 bits)