RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12841
         (88 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.1 bits (75), Expect = 0.005
 Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 30/102 (29%)

Query: 6   NMYHHFCDFFNLYASQHVN---ASHPD---VFSTDVHIMIW---------ESYTYASA-- 48
             YH        ++++ ++    +  D   VF+  ++I+ W         + Y   S   
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL-LSIPI 236

Query: 49  ------------FADTFKAFTRHPVWDLKTFTGLTVCFKNLV 78
                       +  T K     P        G T   + LV
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278


>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural
          genomics, protein structure initiative, PSI; 2.00A
          {Plasmodium falciparum} SCOP: c.1.2.2
          Length = 227

 Score = 26.0 bits (58), Expect = 1.4
 Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 1/27 (3%)

Query: 34 DVHIMIWESYTYASAFADTFKAFTRHP 60
          DVH+M+     Y      +    T H 
Sbjct: 68 DVHLMVEYPEKYVPLLKTS-NQLTFHF 93


>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS
          epimerase family, structural genomics, joint center for
          STR genomics, JCSG; 1.91A {Haemophilus somnus}
          Length = 237

 Score = 26.1 bits (58), Expect = 1.4
 Identities = 6/18 (33%), Positives = 8/18 (44%)

Query: 34 DVHIMIWESYTYASAFAD 51
          DVH+M+      A A   
Sbjct: 73 DVHLMVRNQLEVAKAVVA 90


>1bby_A RAP30; average structure transcription regulation, DNA- binding
          domain, transcription; NMR {Homo sapiens} SCOP:
          a.4.5.15 PDB: 2bby_A
          Length = 69

 Score = 25.1 bits (55), Expect = 1.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 53 FKAFTRHPVWDLKTFTGLT 71
          F AF +H  ++LK    +T
Sbjct: 14 FSAFEKHQYYNLKDLVDIT 32


>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin
          cycle, oxidative pentose PH pathway; 2.30A {Solanum
          tuberosum} SCOP: c.1.2.2
          Length = 230

 Score = 25.6 bits (57), Expect = 2.1
 Identities = 7/18 (38%), Positives = 8/18 (44%)

Query: 34 DVHIMIWESYTYASAFAD 51
          DVH+MI E       F  
Sbjct: 72 DVHLMIVEPDQRVPDFIK 89


>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase,
          isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
          Length = 230

 Score = 25.6 bits (57), Expect = 2.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 34 DVHIMIWESYTYASAFAD 51
          DVH+MI E   Y   FA 
Sbjct: 66 DVHLMIVEPEKYVEDFAK 83


>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol
          5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus
          pyogenes} SCOP: c.1.2.2
          Length = 220

 Score = 25.5 bits (57), Expect = 2.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 34 DVHIMIWESYTYASAFAD 51
          D H+M+ +   Y  AFA 
Sbjct: 65 DCHLMVVDPERYVEAFAQ 82


>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate
          pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2
          PDB: 1h1z_A
          Length = 228

 Score = 25.6 bits (57), Expect = 2.3
 Identities = 5/18 (27%), Positives = 7/18 (38%)

Query: 34 DVHIMIWESYTYASAFAD 51
          D H+M+     Y    A 
Sbjct: 68 DCHLMVTNPSDYVEPLAK 85


>2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding
          protein, sugar binding protein, virulence,
          alpha-glucan, sugar transport; HET: GLC; 2.00A
          {Streptococcus pneumoniae} PDB: 2xd2_A*
          Length = 416

 Score = 25.5 bits (56), Expect = 2.5
 Identities = 5/29 (17%), Positives = 11/29 (37%)

Query: 32 STDVHIMIWESYTYASAFADTFKAFTRHP 60
          S    + ++    Y S   +  KA+ +  
Sbjct: 32 SEVKELTVYVDEGYKSYIEEVAKAYEKEA 60


>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc
           genomics, center for structural genomics of infectious
           DISE csgid; 2.05A {Francisella tularensis subsp}
          Length = 246

 Score = 25.2 bits (56), Expect = 2.6
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 34  DVHIMIWESYTYASAFAD 51
           DVH+M+        +FA 
Sbjct: 90  DVHLMVKPVDALIESFAK 107


>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate,
          (beta/alpha)8 barrel, carbohydrate metabolism,
          isomerase; HET: S6P; 2.20A {Escherichia coli} PDB:
          3ct7_A*
          Length = 231

 Score = 25.2 bits (56), Expect = 2.7
 Identities = 5/18 (27%), Positives = 8/18 (44%)

Query: 34 DVHIMIWESYTYASAFAD 51
          D H+M+     Y +  A 
Sbjct: 61 DCHLMVTRPQDYIAQLAR 78


>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET:
          XPE; 1.70A {Homo sapiens} PDB: 3ovq_A* 3ovr_A* 3qc3_A
          Length = 228

 Score = 25.2 bits (56), Expect = 2.7
 Identities = 4/18 (22%), Positives = 9/18 (50%)

Query: 34 DVHIMIWESYTYASAFAD 51
          D+H+M+ +   +    A 
Sbjct: 68 DMHMMVSKPEQWVKPMAV 85


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.138    0.465 

Gapped
Lambda     K      H
   0.267   0.0780    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,389,610
Number of extensions: 63851
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 15
Length of query: 88
Length of database: 6,701,793
Length adjustment: 56
Effective length of query: 32
Effective length of database: 5,138,217
Effective search space: 164422944
Effective search space used: 164422944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 51 (23.3 bits)