RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12841
         (88 letters)



>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 69

 Score = 25.4 bits (56), Expect = 0.47
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 53 FKAFTRHPVWDLKTFTGLT 71
          F AF +H  ++LK    +T
Sbjct: 14 FSAFEKHQYYNLKDLVDIT 32


>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit
          VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
          Length = 43

 Score = 22.0 bits (47), Expect = 4.9
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 58 RHPVWDLKTFTGLTVCFKNLVLP 80
          + P    +   GL+V F + +LP
Sbjct: 7  KTPTSPKEQAIGLSVTFLSFLLP 29


>gi|152032317|gb|ABS29000.1|(24-141:166) interferon-gamma
          [Rhinoceros unicornis]   gi|83416599|gb|ABC18310.1|
          interferon gamma [Ceratotherium simum]  E=1e-37
          s/c=1.35 id=65% cov=100%
          Length = 118

 Score = 22.8 bits (49), Expect = 7.4
 Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 22 HVNASHPDVFST-DVHIMIWESYT 44
          + NAS+PDV     + + I +++ 
Sbjct: 14 YFNASNPDVGDGGSLFLDILKNWK 37


>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
           {Baltic cod (Gadus callarias) [TaxId: 8053]}
          Length = 503

 Score = 22.7 bits (48), Expect = 9.7
 Identities = 7/22 (31%), Positives = 9/22 (40%)

Query: 50  ADTFKAFTRHPVWDLKTFTGLT 71
           A+T      HP     +FTG  
Sbjct: 222 AETGSLLCHHPNVAKVSFTGSV 243


>d1uz5a3 c.57.1.2 (A:181-328) MoeA, central domain {Archaeon
           Pyrococcus horikoshii, PH0582 [TaxId: 53953]}
          Length = 148

 Score = 22.5 bits (47), Expect = 9.8
 Identities = 14/92 (15%), Positives = 22/92 (23%), Gaps = 12/92 (13%)

Query: 1   MVSAVNMYHHFCDFFNLYASQHVNASHPDVFSTDVHIMIWESYTYASAFADTFKAFTRHP 60
           + + +    +  D            +          ++           A      T   
Sbjct: 56  LKALIEKAVNVGDVV-----VISGGASGGTKDLTASVIEELGEVKVHGIAIQPGKPTIIG 110

Query: 61  VWDLKTFTGL-------TVCFKNLVLPLLPRM 85
           V   K   GL          F  LV+PLL R 
Sbjct: 111 VIKGKPVFGLPGYPTSCLTNFTLLVVPLLLRA 142


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.138    0.465 

Gapped
Lambda     K      H
   0.267   0.0672    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 345,618
Number of extensions: 13090
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 12
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 47 (22.0 bits)