Query psy12843
Match_columns 103
No_of_seqs 190 out of 1067
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 21:12:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12843.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12843hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0369 CysJ Sulfite reductase 99.9 2.2E-26 4.8E-31 174.6 9.5 98 1-101 445-543 (587)
2 PF00175 NAD_binding_1: Oxidor 99.9 3.4E-25 7.4E-30 135.5 7.4 96 1-101 1-101 (109)
3 PRK10953 cysJ sulfite reductas 99.9 4.1E-25 9E-30 168.7 9.4 99 1-102 458-557 (600)
4 PLN03115 ferredoxin--NADP(+) r 99.9 4E-25 8.7E-30 160.6 8.4 99 1-102 220-329 (367)
5 cd06207 CyPoR_like NADPH cytoc 99.9 8.3E-25 1.8E-29 159.6 10.0 100 1-102 235-339 (382)
6 cd06199 SiR Cytochrome p450- l 99.9 8.2E-25 1.8E-29 158.7 9.8 98 1-101 218-316 (360)
7 cd06202 Nitric_oxide_synthase 99.9 8.8E-25 1.9E-29 160.7 9.6 100 1-102 251-360 (406)
8 cd06203 methionine_synthase_re 99.9 9.5E-25 2.1E-29 160.1 9.7 99 1-101 246-354 (398)
9 TIGR01931 cysJ sulfite reducta 99.9 4.3E-24 9.3E-29 163.2 9.6 98 1-101 455-553 (597)
10 cd06206 bifunctional_CYPOR The 99.9 1.3E-23 2.9E-28 153.4 9.8 99 1-102 235-338 (384)
11 KOG1158|consensus 99.9 3.6E-24 7.7E-29 163.3 6.7 101 1-101 496-601 (645)
12 cd06204 CYPOR NADPH cytochrome 99.9 2E-23 4.4E-28 153.9 10.1 99 1-102 270-373 (416)
13 PRK06214 sulfite reductase; Pr 99.9 3E-23 6.5E-28 156.5 9.9 98 1-101 388-486 (530)
14 cd06208 CYPOR_like_FNR These f 99.9 3.9E-23 8.5E-28 145.8 9.8 99 1-102 140-249 (286)
15 cd06200 SiR_like1 Cytochrome p 99.9 5.9E-23 1.3E-27 142.1 9.3 97 1-101 114-211 (245)
16 PLN03116 ferredoxin--NADP+ red 99.9 6.8E-23 1.5E-27 145.9 9.2 98 1-102 161-269 (307)
17 cd06182 CYPOR_like NADPH cytoc 99.9 4.4E-22 9.6E-27 139.4 10.1 99 1-102 120-224 (267)
18 TIGR03224 benzo_boxA benzoyl-C 99.9 6.2E-22 1.3E-26 145.8 9.0 98 1-102 272-373 (411)
19 PRK10926 ferredoxin-NADP reduc 99.9 1.8E-21 3.9E-26 134.9 8.3 99 1-102 111-216 (248)
20 cd06201 SiR_like2 Cytochrome p 99.9 2.2E-21 4.8E-26 137.2 8.5 95 1-102 160-255 (289)
21 PRK08051 fre FMN reductase; Va 99.8 4.3E-21 9.2E-26 131.7 7.7 93 1-102 107-204 (232)
22 PRK11872 antC anthranilate dio 99.8 8.7E-21 1.9E-25 136.7 8.4 93 1-102 214-311 (340)
23 cd06188 NADH_quinone_reductase 99.8 1E-20 2.2E-25 133.1 8.2 97 1-102 155-259 (283)
24 cd06189 flavin_oxioreductase N 99.8 2E-20 4.3E-25 127.4 9.3 93 1-102 103-200 (224)
25 cd06211 phenol_2-monooxygenase 99.8 1.4E-20 3.1E-25 129.2 8.5 94 1-102 114-214 (238)
26 PRK07609 CDP-6-deoxy-delta-3,4 99.8 3.9E-20 8.6E-25 132.9 9.0 93 1-102 209-308 (339)
27 PRK08345 cytochrome-c3 hydroge 99.8 3.3E-20 7E-25 131.2 8.0 93 1-102 113-222 (289)
28 cd06195 FNR1 Ferredoxin-NADP+ 99.8 6E-20 1.3E-24 126.3 8.7 99 1-102 106-211 (241)
29 cd06209 BenDO_FAD_NAD Benzoate 99.8 6E-20 1.3E-24 125.3 8.5 93 1-102 107-203 (228)
30 cd06210 MMO_FAD_NAD_binding Me 99.8 4E-20 8.7E-25 126.6 7.4 94 1-102 113-211 (236)
31 cd06212 monooxygenase_like The 99.8 5.3E-20 1.1E-24 125.8 7.8 93 1-102 108-207 (232)
32 cd00322 FNR_like Ferredoxin re 99.8 3.7E-20 8.1E-25 125.0 7.0 99 1-102 102-201 (223)
33 cd06190 T4MO_e_transfer_like T 99.8 7.1E-20 1.5E-24 125.1 8.1 94 1-102 102-206 (232)
34 cd06187 O2ase_reductase_like T 99.8 1.2E-19 2.6E-24 123.2 8.9 93 1-102 103-200 (224)
35 KOG1159|consensus 99.8 2.3E-20 4.9E-25 137.8 5.6 95 1-101 437-531 (574)
36 PRK13289 bifunctional nitric o 99.8 1E-19 2.3E-24 133.0 8.8 93 1-102 266-368 (399)
37 PRK05464 Na(+)-translocating N 99.8 1.3E-19 2.8E-24 133.4 8.4 97 1-102 279-383 (409)
38 TIGR01941 nqrF NADH:ubiquinone 99.8 1E-19 2.2E-24 133.8 7.6 97 1-102 275-379 (405)
39 cd06221 sulfite_reductase_like 99.8 2.5E-19 5.5E-24 124.4 8.6 93 1-102 103-200 (253)
40 cd06213 oxygenase_e_transfer_s 99.8 2.8E-19 6.1E-24 122.0 8.6 91 1-102 105-203 (227)
41 PRK10684 HCP oxidoreductase, N 99.8 1.7E-19 3.7E-24 129.5 7.1 96 1-102 116-213 (332)
42 PTZ00274 cytochrome b5 reducta 99.8 2.9E-19 6.3E-24 128.4 8.3 97 1-102 164-273 (325)
43 cd06191 FNR_iron_sulfur_bindin 99.8 2.7E-19 5.9E-24 122.2 7.5 93 1-102 107-207 (231)
44 PRK05713 hypothetical protein; 99.8 4.6E-19 9.9E-24 126.4 7.6 87 1-102 197-284 (312)
45 cd06196 FNR_like_1 Ferredoxin 99.8 2.7E-19 5.9E-24 121.2 5.5 93 1-102 104-196 (218)
46 KOG0534|consensus 99.8 1.6E-18 3.4E-23 122.2 9.3 94 1-102 161-263 (286)
47 PTZ00319 NADH-cytochrome B5 re 99.8 8.7E-19 1.9E-23 124.6 8.0 100 1-102 171-277 (300)
48 cd06184 flavohem_like_fad_nad_ 99.8 2E-18 4.4E-23 118.9 8.7 93 1-102 118-219 (247)
49 cd06215 FNR_iron_sulfur_bindin 99.8 2.5E-18 5.3E-23 117.2 8.2 93 1-102 108-207 (231)
50 cd06194 FNR_N-term_Iron_sulfur 99.8 3.6E-18 7.9E-23 116.0 8.5 93 1-102 102-197 (222)
51 PRK08221 anaerobic sulfite red 99.8 2.1E-18 4.5E-23 120.6 7.3 93 1-102 106-202 (263)
52 cd06217 FNR_iron_sulfur_bindin 99.8 2.9E-18 6.3E-23 117.1 7.6 94 1-102 112-211 (235)
53 TIGR02160 PA_CoA_Oxy5 phenylac 99.8 3.5E-18 7.6E-23 123.4 8.3 96 1-102 114-217 (352)
54 cd06216 FNR_iron_sulfur_bindin 99.8 5E-18 1.1E-22 116.8 8.6 92 1-102 127-220 (243)
55 TIGR02911 sulfite_red_B sulfit 99.7 6.6E-18 1.4E-22 118.0 7.7 93 1-102 104-200 (261)
56 cd06183 cyt_b5_reduct_like Cyt 99.7 1.6E-17 3.4E-22 113.3 7.9 96 1-102 109-211 (234)
57 cd06214 PA_degradation_oxidore 99.7 2.3E-17 5E-22 113.2 8.0 97 1-102 113-216 (241)
58 cd06198 FNR_like_3 NAD(P) bind 99.7 2.2E-17 4.9E-22 111.8 7.8 92 1-102 100-191 (216)
59 PLN02252 nitrate reductase [NA 99.7 5.6E-17 1.2E-21 128.4 7.9 95 1-102 763-865 (888)
60 cd06218 DHOD_e_trans FAD/NAD b 99.7 7.3E-17 1.6E-21 111.7 7.2 86 1-102 103-190 (246)
61 PTZ00306 NADH-dependent fumara 99.7 1.7E-16 3.8E-21 128.7 8.6 93 1-102 1036-1139(1167)
62 COG2871 NqrF Na+-transporting 99.7 1.9E-16 4.1E-21 111.4 6.6 96 1-101 280-383 (410)
63 cd06219 DHOD_e_trans_like1 FAD 99.7 2.7E-16 5.8E-21 109.0 6.8 87 1-102 102-190 (248)
64 COG0543 UbiB 2-polyprenylpheno 99.6 9.4E-16 2E-20 106.8 8.4 89 1-102 112-202 (252)
65 COG1018 Hmp Flavodoxin reducta 99.6 2.6E-15 5.7E-20 105.4 8.8 89 1-101 115-205 (266)
66 cd06220 DHOD_e_trans_like2 FAD 99.6 1.2E-15 2.6E-20 104.7 6.8 84 1-102 93-177 (233)
67 COG4097 Predicted ferric reduc 99.6 1.7E-15 3.8E-20 109.3 7.8 89 1-101 320-410 (438)
68 PRK06222 ferredoxin-NADP(+) re 99.6 1.6E-15 3.6E-20 106.9 6.9 87 1-102 103-191 (281)
69 PRK00054 dihydroorotate dehydr 99.6 2.5E-15 5.5E-20 104.1 6.1 83 1-102 107-191 (250)
70 cd06185 PDR_like Phthalate dio 99.6 7.7E-15 1.7E-19 98.9 7.3 84 1-102 103-186 (211)
71 cd06197 FNR_like_2 FAD/NAD(P) 99.6 8.2E-15 1.8E-19 100.0 6.2 49 1-52 130-179 (220)
72 cd06192 DHOD_e_trans_like FAD/ 99.5 1.1E-14 2.3E-19 100.4 6.3 85 1-102 102-188 (243)
73 PRK05802 hypothetical protein; 99.5 1.3E-14 2.9E-19 104.1 5.0 84 1-101 177-263 (320)
74 PRK12779 putative bifunctional 99.5 8.1E-14 1.8E-18 111.4 8.5 96 1-102 755-857 (944)
75 PRK12778 putative bifunctional 99.5 1.6E-13 3.4E-18 107.6 6.8 87 1-102 103-191 (752)
76 PRK12775 putative trifunctiona 99.4 1.3E-12 2.8E-17 105.2 7.1 85 1-101 104-190 (1006)
77 PLN02844 oxidoreductase/ferric 99.3 9.4E-12 2E-16 97.2 8.4 97 1-100 428-534 (722)
78 cd06186 NOX_Duox_like_FAD_NADP 99.3 5.6E-12 1.2E-16 84.9 6.0 47 1-50 111-162 (210)
79 PLN02292 ferric-chelate reduct 99.3 2.4E-11 5.2E-16 94.7 7.9 97 1-102 436-547 (702)
80 PLN02631 ferric-chelate reduct 99.2 8.3E-11 1.8E-15 91.6 7.3 67 1-68 417-492 (699)
81 cd06193 siderophore_interactin 99.2 3.3E-11 7.2E-16 82.9 4.5 83 1-102 125-208 (235)
82 PF08030 NAD_binding_6: Ferric 99.0 1.1E-09 2.3E-14 70.6 4.5 66 1-67 6-78 (156)
83 KOG3378|consensus 96.8 0.0003 6.5E-09 50.1 -0.3 20 1-20 267-286 (385)
84 KOG0039|consensus 94.3 0.049 1.1E-06 43.0 3.4 51 1-52 471-536 (646)
85 COG1691 NCAIR mutase (PurE)-re 70.2 3.3 7.1E-05 29.1 1.7 17 3-19 209-225 (254)
86 KOG1611|consensus 67.3 36 0.00079 24.0 6.4 49 12-67 17-67 (249)
87 PRK06567 putative bifunctional 61.0 8.5 0.00018 32.5 2.7 17 1-20 898-914 (1028)
88 PF04389 Peptidase_M28: Peptid 55.6 39 0.00084 21.6 4.8 61 4-65 27-89 (179)
89 PF03607 DCX: Doublecortin; I 53.0 14 0.00031 19.9 2.0 13 91-103 46-58 (60)
90 PF06753 Bradykinin: Bradykini 47.5 3.2 7E-05 17.2 -0.9 9 6-14 6-14 (19)
91 PHA00728 hypothetical protein 46.8 13 0.00028 23.5 1.4 19 83-101 52-70 (151)
92 PRK12446 undecaprenyldiphospho 44.9 27 0.00059 25.5 3.0 21 1-21 6-28 (352)
93 PF01344 Kelch_1: Kelch motif; 44.7 17 0.00036 17.9 1.4 10 92-101 11-20 (47)
94 COG4078 Predicted membrane pro 43.7 22 0.00048 24.0 2.2 21 2-22 174-194 (221)
95 KOG4723|consensus 42.8 1.1E+02 0.0024 21.4 5.4 55 11-67 5-59 (248)
96 PF08756 YfkB: YfkB-like domai 41.4 99 0.0022 20.1 5.6 25 8-35 15-39 (153)
97 COG0521 MoaB Molybdopterin bio 39.5 7.2 0.00016 26.0 -0.6 16 2-17 73-88 (169)
98 cd01617 DCX Ubiquitin-like dom 39.3 21 0.00046 20.4 1.4 12 91-102 65-76 (80)
99 TIGR00682 lpxK tetraacyldisacc 38.0 38 0.00081 24.6 2.8 20 2-21 37-56 (311)
100 PF07355 GRDB: Glycine/sarcosi 36.1 18 0.0004 26.8 1.0 30 71-100 59-88 (349)
101 PF02606 LpxK: Tetraacyldisacc 35.9 46 0.00099 24.3 3.0 21 2-22 44-64 (326)
102 PRK01906 tetraacyldisaccharide 35.6 53 0.0011 24.2 3.3 20 2-21 65-84 (338)
103 COG0391 Uncharacterized conser 35.1 29 0.00063 25.5 1.8 18 2-19 13-30 (323)
104 COG5023 Tubulin [Cytoskeleton] 35.1 37 0.0008 25.8 2.4 20 2-22 139-158 (443)
105 KOG3507|consensus 34.7 27 0.00058 19.2 1.2 10 91-100 16-25 (62)
106 PF00737 PsbH: Photosystem II 34.7 52 0.0011 17.5 2.3 18 2-19 18-35 (52)
107 TIGR01917 gly_red_sel_B glycin 34.5 21 0.00046 27.2 1.1 31 70-100 54-84 (431)
108 PRK02624 psbH photosystem II r 34.2 44 0.00096 18.5 2.0 19 2-20 21-39 (64)
109 cd00209 DHFR Dihydrofolate red 34.1 21 0.00046 22.9 1.0 13 90-102 89-101 (158)
110 TIGR01918 various_sel_PB selen 33.6 22 0.00049 27.1 1.1 31 70-100 54-84 (431)
111 PF02298 Cu_bind_like: Plastoc 32.5 27 0.00059 20.2 1.1 15 88-102 65-79 (85)
112 cd07187 YvcK_like family of mo 31.0 28 0.00061 25.3 1.2 18 1-18 3-20 (308)
113 cd07044 CofD_YvcK Family of Co 30.7 32 0.00069 25.1 1.5 18 1-18 3-20 (309)
114 KOG1431|consensus 29.7 2E+02 0.0043 20.7 5.1 48 1-54 5-53 (315)
115 TIGR01826 CofD_related conserv 29.7 34 0.00073 25.0 1.4 17 2-18 4-20 (310)
116 PF03033 Glyco_transf_28: Glyc 29.6 66 0.0014 19.4 2.6 21 2-22 4-26 (139)
117 COG0707 MurG UDP-N-acetylgluco 29.1 66 0.0014 23.8 2.9 22 2-23 6-29 (357)
118 TIGR00065 ftsZ cell division p 28.8 38 0.00082 25.0 1.6 13 3-15 114-126 (349)
119 COG4742 Predicted transcriptio 28.8 1E+02 0.0023 22.0 3.7 21 80-100 183-203 (260)
120 KOG1374|consensus 28.8 42 0.0009 25.5 1.8 41 2-43 141-182 (448)
121 CHL00066 psbH photosystem II p 28.3 60 0.0013 18.6 2.0 19 2-20 33-51 (73)
122 PF03447 NAD_binding_3: Homose 27.7 44 0.00096 20.0 1.6 47 6-58 67-113 (117)
123 COG1219 ClpX ATP-dependent pro 27.5 27 0.00058 26.2 0.6 23 36-59 160-183 (408)
124 COG1448 TyrB Aspartate/tyrosin 27.4 2.4E+02 0.0053 21.5 5.5 66 29-101 174-244 (396)
125 PRK13018 cell division protein 27.3 31 0.00066 25.9 0.9 11 3-13 125-135 (378)
126 PF00091 Tubulin: Tubulin/FtsZ 27.2 22 0.00048 24.0 0.1 9 3-11 134-144 (216)
127 cd02191 FtsZ FtsZ is a GTPase 27.1 32 0.0007 24.8 1.0 11 3-13 97-107 (303)
128 PF10125 NADHdeh_related: NADH 27.1 57 0.0012 22.4 2.1 20 2-21 173-192 (219)
129 smart00537 DCX Domain in the D 27.1 29 0.00063 20.3 0.6 11 92-102 71-81 (89)
130 PRK09330 cell division protein 26.8 42 0.00091 25.3 1.5 11 3-13 110-120 (384)
131 TIGR02877 spore_yhbH sporulati 26.8 65 0.0014 24.2 2.5 37 3-41 266-302 (371)
132 PF13964 Kelch_6: Kelch motif 26.6 48 0.001 16.5 1.4 10 92-101 11-20 (50)
133 cd02201 FtsZ_type1 FtsZ is a G 25.9 47 0.001 23.8 1.6 11 3-13 97-107 (304)
134 PF06453 LT-IIB: Type II heat- 25.8 1.3E+02 0.0029 18.5 3.3 38 29-67 69-109 (122)
135 PLN00055 photosystem II reacti 25.6 71 0.0015 18.3 2.0 19 2-20 33-51 (73)
136 PRK02797 4-alpha-L-fucosyltran 25.5 2.8E+02 0.0061 20.5 5.5 51 28-79 146-198 (322)
137 COG2234 Iap Predicted aminopep 25.2 1.2E+02 0.0027 22.4 3.8 42 4-48 229-270 (435)
138 PF00186 DHFR_1: Dihydrofolate 25.1 64 0.0014 21.0 2.0 15 87-101 86-100 (161)
139 PF01372 Melittin: Melittin; 24.4 85 0.0018 14.1 2.0 14 6-19 11-24 (26)
140 PRK00652 lpxK tetraacyldisacch 24.4 87 0.0019 22.9 2.8 20 2-21 58-77 (325)
141 PF04285 DUF444: Protein of un 24.3 75 0.0016 24.3 2.5 38 3-42 310-347 (421)
142 KOG0736|consensus 24.1 68 0.0015 26.9 2.3 32 69-100 785-817 (953)
143 COG0206 FtsZ Cell division GTP 23.4 37 0.00081 25.1 0.7 15 3-17 108-122 (338)
144 KOG2792|consensus 23.4 2.9E+02 0.0064 20.0 5.9 23 29-53 142-164 (280)
145 PRK05325 hypothetical protein; 22.6 78 0.0017 24.1 2.3 38 3-42 286-323 (401)
146 PF12924 APP_Cu_bd: Copper-bin 22.4 45 0.00098 18.2 0.8 9 93-101 50-58 (58)
147 PRK13606 LPPG:FO 2-phospho-L-l 22.3 61 0.0013 23.6 1.6 19 1-19 5-23 (303)
148 COG4123 Predicted O-methyltran 22.0 49 0.0011 23.4 1.1 25 43-67 99-124 (248)
149 smart00863 tRNA_SAD Threonyl a 21.1 52 0.0011 16.0 0.8 11 92-102 8-18 (44)
150 KOG2480|consensus 20.9 51 0.0011 26.1 1.0 22 2-23 514-535 (602)
151 COG4100 Cystathionine beta-lya 20.6 67 0.0015 23.9 1.5 55 41-101 63-117 (416)
152 PF06739 SBBP: Beta-propeller 20.5 73 0.0016 15.4 1.3 12 90-101 21-32 (38)
153 PRK08526 threonine dehydratase 20.3 1.5E+02 0.0032 22.3 3.4 64 1-67 272-337 (403)
154 smart00864 Tubulin Tubulin/Fts 20.2 58 0.0013 21.5 1.1 9 4-12 96-104 (192)
155 PF08973 TM1506: Domain of unk 20.1 77 0.0017 20.2 1.6 16 3-18 26-41 (134)
No 1
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.2e-26 Score=174.61 Aligned_cols=98 Identities=37% Similarity=0.643 Sum_probs=90.7
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhCC-CeEEEEEEeCCCCCccchhHHHhh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN-QLTLYTAFSRDQEEKITNNLSFES 79 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~-~~~~~~~~s~~~~~~g~v~~~l~~ 79 (103)
|||.|||||||+++++++..++..++ +|||||+|+.+.|++|++||++|.+++ .+++..+.||+++.+.||||+|++
T Consensus 445 MIG~GTGIAPFRafvq~r~~~~~~gk--~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~~KiYVQd~lre 522 (587)
T COG0369 445 MIGPGTGIAPFRAFVQERAANGAEGK--NWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQEEKIYVQDRLRE 522 (587)
T ss_pred EEcCCCCchhHHHHHHHHHhccccCc--eEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecCCCCccHHHHHHH
Confidence 79999999999999999999887776 999999999659999999999999987 556999999999899999999999
Q ss_pred cHHhhccccCCCCcEEEEeecC
Q psy12843 80 RVEAKIPYLGWDSTYIILIIRP 101 (103)
Q Consensus 80 ~~~~l~~~l~~~~~~~yvcg~p 101 (103)
+.+.|+.|+... +++||||.+
T Consensus 523 ~~del~~~l~~g-a~~YVCGd~ 543 (587)
T COG0369 523 QADELWEWLEEG-AHIYVCGDA 543 (587)
T ss_pred hHHHHHHHHHCC-CEEEEeCCC
Confidence 999999999976 999999954
No 2
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.92 E-value=3.4e-25 Score=135.54 Aligned_cols=96 Identities=23% Similarity=0.312 Sum_probs=76.0
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CC-eEEEEEEeCCCC---CccchhH
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQ-LTLYTAFSRDQE---EKITNNL 75 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~-~~~~~~~s~~~~---~~g~v~~ 75 (103)
|||||||||||+||+++++.+...++ ++|+||+|+. +|++|.++|++|++. ++ +++..+.+.+++ .+|||++
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~~~~~--v~l~~~~r~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~ 77 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERNDNRK--VTLFYGARTP-EDLLFRDELEALAQEYPNRFHVVYVSSPDDGWDGFKGRVTD 77 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHTCTSE--EEEEEEESSG-GGSTTHHHHHHHHHHSTTCEEEEEETTTTSSTTSEESSHHH
T ss_pred CeecceeHHHHHHHHHHHHHhCCCCC--EEEEEEEccc-ccccchhHHHHHHhhcccccccccccccccccCCceeehhH
Confidence 79999999999999999998754444 9999999999 899999999999976 55 666555322222 5889999
Q ss_pred HHhhcHHhhccccCCCCcEEEEeecC
Q psy12843 76 SFESRVEAKIPYLGWDSTYIILIIRP 101 (103)
Q Consensus 76 ~l~~~~~~l~~~l~~~~~~~yvcg~p 101 (103)
.+.+.... ..+++.++++|+||+|
T Consensus 78 ~~~~~~~~--~~~~~~~~~v~iCGp~ 101 (109)
T PF00175_consen 78 LLLEDLLP--EKIDPDDTHVYICGPP 101 (109)
T ss_dssp HHHHHHHH--HHHCTTTEEEEEEEEH
T ss_pred HHHHhhcc--cccCCCCCEEEEECCH
Confidence 88654332 3456789999999986
No 3
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.92 E-value=4.1e-25 Score=168.67 Aligned_cols=99 Identities=33% Similarity=0.576 Sum_probs=87.9
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhCCCeE-EEEEEeCCCCCccchhHHHhh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT-LYTAFSRDQEEKITNNLSFES 79 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~~~~-~~~~~s~~~~~~g~v~~~l~~ 79 (103)
|||+|||||||+||++++..++..++ ++||||+|+...|++|.+||++|.+++.++ ++.++||++..++|||++|.+
T Consensus 458 mIg~GTGIAPfrsflq~r~~~~~~~~--~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afSRd~~~k~YVQ~~l~e 535 (600)
T PRK10953 458 MIGPGTGIAPFRAFMQQRAADGAPGK--NWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSRDQKEKIYVQDKLRE 535 (600)
T ss_pred EEecCcCcHHHHHHHHHHHHcCCCCC--eEEEeeccCCccchhHHHHHHHHHHcCCcceEEEEECCCCCCCCcHHHHHHH
Confidence 79999999999999999887665565 999999999448999999999999886565 889999998779999999999
Q ss_pred cHHhhccccCCCCcEEEEeecCC
Q psy12843 80 RVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 80 ~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+.+.++.|+. ++++|||||...
T Consensus 536 ~~~~l~~~l~-~ga~~YVCG~~~ 557 (600)
T PRK10953 536 QGAELWRWIN-DGAHIYVCGDAN 557 (600)
T ss_pred HHHHHHHHHH-CCcEEEEECCCc
Confidence 9999999985 689999999863
No 4
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.92 E-value=4e-25 Score=160.58 Aligned_cols=99 Identities=26% Similarity=0.407 Sum_probs=85.2
Q ss_pred CccccccHHHHHHHHHHHHhccc-----CCCceEEEEEeeccCCCccccHHHHHHHHhC-C-CeEEEEEEeCCCC----C
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQT-----ASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-N-QLTLYTAFSRDQE----E 69 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~-----~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~-~~~~~~~~s~~~~----~ 69 (103)
|||||||||||+||+++++.+.. .+ +++||||+|+. +|++|.+||++|+++ + +|++++++||+++ .
T Consensus 220 mIAgGTGIAP~rs~L~~~~~~~~~~~~~~~--~v~Lf~G~R~~-~dlly~dELe~l~~~~p~~f~v~~a~SR~~~~~~G~ 296 (367)
T PLN03115 220 MLATGTGIAPFRSFLWKMFFEKHDDYKFNG--LAWLFLGVPTS-SSLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGE 296 (367)
T ss_pred EEeCCeeHHHHHHHHHHHHhhccccccCCC--cEEEEEccCCH-HHhhHHHHHHHHHHhCCCCEEEEEEEcCCCcccCCc
Confidence 79999999999999998754322 23 39999999999 799999999999886 5 8999999999764 5
Q ss_pred ccchhHHHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 70 KITNNLSFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 70 ~g~v~~~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
++|||+.|.+..+.++.++..+++++||||+|.
T Consensus 297 kgyVqd~i~e~~e~l~~~l~~~~~~vYiCGp~~ 329 (367)
T PLN03115 297 KMYIQTRMAEYAEELWELLKKDNTYVYMCGLKG 329 (367)
T ss_pred ceeehhHHHHHHHHHHhhcccCCeEEEEeCCHH
Confidence 799999999888888888877789999999873
No 5
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.92 E-value=8.3e-25 Score=159.62 Aligned_cols=100 Identities=31% Similarity=0.500 Sum_probs=85.4
Q ss_pred CccccccHHHHHHHHHHHHhc----ccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCCCccchhH
Q psy12843 1 MVGPGTGIAPFRSYIHTRISN----QTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQEEKITNNL 75 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~----~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~~~g~v~~ 75 (103)
|||+|||||||+||++++... ...++ ++||||+|+.+.|++|.+||++|+++ .++++++++||+++.++|||+
T Consensus 235 mIa~GtGIAP~rs~l~~~~~~~~~~~~~~~--~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~~~~~yVq~ 312 (382)
T cd06207 235 MVGPGTGLAPFRAFLQERAALLAQGPEIGP--VLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQPKKVYVQD 312 (382)
T ss_pred EEcCCccHHHHHHHHHHHHHHhhcCccCCC--EEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCCCCceEhHH
Confidence 799999999999999987643 22344 99999999975699999999999987 667899999998877899999
Q ss_pred HHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 76 SFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 76 ~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
.+.++.+.++.++...++.|||||++.
T Consensus 313 ~l~~~~~~~~~~l~~~~~~vYvCG~~~ 339 (382)
T cd06207 313 LIRENSDLVYQLLEEGAGVIYVCGSTW 339 (382)
T ss_pred HHHHCHHHHHHHHhcCCCEEEEECCcc
Confidence 999887788877765566999999985
No 6
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.92 E-value=8.2e-25 Score=158.68 Aligned_cols=98 Identities=34% Similarity=0.511 Sum_probs=85.8
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCCCccchhHHHhh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQEEKITNNLSFES 79 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~~~g~v~~~l~~ 79 (103)
|||+|||||||+||+++++.....++ ++||||+|+.+.|++|.+||++|++. .+++++.++||++..++|||+.+.+
T Consensus 218 mIa~GtGIAP~~s~l~~~~~~~~~~~--~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~Sr~~~~~~yVq~~l~~ 295 (360)
T cd06199 218 MVGPGTGIAPFRAFLQEREATGAKGK--NWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAFSRDQAEKVYVQDRMRE 295 (360)
T ss_pred EEecCcChHHHHHHHHHHHhccCCCc--EEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEEEccCCCCCccHHHHHHH
Confidence 79999999999999999877655555 99999999964699999999999987 6778999999988778999999998
Q ss_pred cHHhhccccCCCCcEEEEeecC
Q psy12843 80 RVEAKIPYLGWDSTYIILIIRP 101 (103)
Q Consensus 80 ~~~~l~~~l~~~~~~~yvcg~p 101 (103)
+.+.++.++. .++++||||+|
T Consensus 296 ~~~~~~~~~~-~~~~vYvCG~~ 316 (360)
T cd06199 296 QGAELWAWLE-EGAHFYVCGDA 316 (360)
T ss_pred hHHHHHHHHh-CCCEEEEECCC
Confidence 8888877765 47999999998
No 7
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.92 E-value=8.8e-25 Score=160.65 Aligned_cols=100 Identities=33% Similarity=0.472 Sum_probs=85.0
Q ss_pred CccccccHHHHHHHHHHHHhc--------ccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCC-Cc
Q psy12843 1 MVGPGTGIAPFRSYIHTRISN--------QTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQE-EK 70 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~--------~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~-~~ 70 (103)
|||+|||||||+||++++... ...++ ++||||+|+.+.|++|.+||++|.+. .++++++++||++. .+
T Consensus 251 mIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~--v~L~~G~R~~~~d~ly~~El~~~~~~~~~~~~~~a~SR~~~~~k 328 (406)
T cd06202 251 MVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGD--MTLFFGCRNSTIDDIYKEETEEAKNKGVLTEVYTALSREPGKPK 328 (406)
T ss_pred EEcCCcChHHHHHHHHHHHHHhhhcccccCCCCC--EEEEEcCCCCCcccchHHHHHHHHHcCCCceEEEEEcCCCCCCC
Confidence 799999999999999987432 12344 99999999985699999999999988 55679999999864 58
Q ss_pred cchhHHHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 71 ITNNLSFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 71 g~v~~~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+|||+.|.+..+.++.++...++++||||+|.
T Consensus 329 ~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~~~ 360 (406)
T cd06202 329 TYVQDLLKEQAESVYDALVREGGHIYVCGDVT 360 (406)
T ss_pred eehhhHHHHhHHHHHHHHHhCCCEEEEeCCCc
Confidence 99999999988888888867799999999873
No 8
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.92 E-value=9.5e-25 Score=160.13 Aligned_cols=99 Identities=30% Similarity=0.483 Sum_probs=84.9
Q ss_pred CccccccHHHHHHHHHHHHhc------ccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCC---Cc
Q psy12843 1 MVGPGTGIAPFRSYIHTRISN------QTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQE---EK 70 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~------~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~---~~ 70 (103)
|||+|||||||+||++++... ...++ ++||||+|+.+.|++|.+||++|+++ ..+++++++||+++ .+
T Consensus 246 mIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~--~~Lf~G~R~~~~d~~y~~El~~~~~~~~~~~~~~a~SRd~~~~g~k 323 (398)
T cd06203 246 MVGPGTGVAPFLGFLQHREKLKESHTETVFGE--AWLFFGCRHRDRDYLFRDELEEFLEEGILTRLIVAFSRDENDGSTP 323 (398)
T ss_pred EEcCCcChHHHHHHHHHHHHHHhhcccCCCCC--EEEEEeCCCCCcchhHHHHHHHHHHcCCCceEEEEECCCCCCCCCc
Confidence 799999999999999988652 22344 99999999984599999999999988 55679999999876 48
Q ss_pred cchhHHHhhcHHhhccccCCCCcEEEEeecC
Q psy12843 71 ITNNLSFESRVEAKIPYLGWDSTYIILIIRP 101 (103)
Q Consensus 71 g~v~~~l~~~~~~l~~~l~~~~~~~yvcg~p 101 (103)
+|||+.|.+..+.++.++...++.+||||++
T Consensus 324 ~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~ 354 (398)
T cd06203 324 KYVQDKLEERGKKLVDLLLNSNAKIYVCGDA 354 (398)
T ss_pred eecchHHHhCHHHHHHHHhcCCcEEEEECCc
Confidence 9999999998888888877678999999986
No 9
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.91 E-value=4.3e-24 Score=163.17 Aligned_cols=98 Identities=33% Similarity=0.561 Sum_probs=84.7
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhCC-CeEEEEEEeCCCCCccchhHHHhh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN-QLTLYTAFSRDQEEKITNNLSFES 79 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~-~~~~~~~~s~~~~~~g~v~~~l~~ 79 (103)
|||+|||||||+||++++..++..++ ++||||+|+..+|++|.+||++|.++. .++++.++||+++.++|||++|.+
T Consensus 455 mIg~GTGIAPfrsflq~r~~~~~~g~--~~LffG~R~~~~D~ly~~El~~~~~~~~l~~l~~afSRd~~~k~yVqd~l~e 532 (597)
T TIGR01931 455 MIGPGTGVAPFRAFMQERAEDGAKGK--NWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSRDQAEKIYVQHRIRE 532 (597)
T ss_pred EEcCCcCchhHHHHHHHHHHccCCCC--EEEEECCCCCCcchhHHHHHHHHHHcCCCceeEEEEecCCCCCccHHHHHHH
Confidence 79999999999999999887765565 999999999327999999999999884 455889999977678999999999
Q ss_pred cHHhhccccCCCCcEEEEeecC
Q psy12843 80 RVEAKIPYLGWDSTYIILIIRP 101 (103)
Q Consensus 80 ~~~~l~~~l~~~~~~~yvcg~p 101 (103)
+.+.++.++. .+++|||||.|
T Consensus 533 ~~~~~~~~l~-~~a~vYvCG~~ 553 (597)
T TIGR01931 533 QGAELWQWLQ-EGAHIYVCGDA 553 (597)
T ss_pred hHHHHHHHHh-CCcEEEEECCC
Confidence 8888888776 47999999954
No 10
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.90 E-value=1.3e-23 Score=153.40 Aligned_cols=99 Identities=22% Similarity=0.333 Sum_probs=83.7
Q ss_pred CccccccHHHHHHHHHHHHhc---c-cCCCceEEEEEeeccCCCccccHHHHHHHHhCCCeEEEEEEeCCCC-CccchhH
Q psy12843 1 MVGPGTGIAPFRSYIHTRISN---Q-TASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLYTAFSRDQE-EKITNNL 75 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~---~-~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~s~~~~-~~g~v~~ 75 (103)
|||||||||||+||++++... + ..++ ++||||+|+.+.|++|.+||++|++.+++++++++|+++. .++|||+
T Consensus 235 mIa~GtGIAP~~s~l~~~~~~~~~~~~~~~--v~L~~G~R~~~~d~ly~~el~~~~~~~~~~l~~a~Sr~~~~~~~yVq~ 312 (384)
T cd06206 235 MIAAGTGLAPFRGFLQERAALLAQGRKLAP--ALLFFGCRHPDHDDLYRDELEEWEAAGVVSVRRAYSRPPGGGCRYVQD 312 (384)
T ss_pred EEeCCCCcHHHHHHHHHHHHHHhcCCCcCC--EEEEEeCCCCCcccchHHHHHHHHHCCCeEEEEEecccCCCCCEechh
Confidence 799999999999999987643 2 1244 9999999998459999999999998888999999999765 3899999
Q ss_pred HHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 76 SFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 76 ~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
.|.+..+.++.++. .++++||||+|.
T Consensus 313 ~i~~~~~~~~~~~~-~~~~vyiCGp~~ 338 (384)
T cd06206 313 RLWAEREEVWELWE-QGARVYVCGDGR 338 (384)
T ss_pred hHHhhHHHHHHHHH-CCcEEEEECCCc
Confidence 99887777777664 589999999984
No 11
>KOG1158|consensus
Probab=99.90 E-value=3.6e-24 Score=163.27 Aligned_cols=101 Identities=33% Similarity=0.583 Sum_probs=87.8
Q ss_pred CccccccHHHHHHHHHHHHhcccCCC---ceEEEEEeeccCCCccccHHHHHHHHhCCC-eEEEEEEeCCC-CCccchhH
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASA---QRLHLFFGCRNQGADFYFNQEWQNAIQANQ-LTLYTAFSRDQ-EEKITNNL 75 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~---~~v~l~~g~r~~~~d~~~~~el~~~~~~~~-~~~~~~~s~~~-~~~g~v~~ 75 (103)
|||.|||||||+++++++......++ ..+|||||+|+++.|.+|++||+++.+.+. +++..++||++ +.+-|||+
T Consensus 496 MIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~A~SReq~~~k~YVQd 575 (645)
T KOG1158|consen 496 MIGPGTGIAPFRGFLQERLFLKQQGPKFGGGMWLFFGCRNSDEDYLYREEWEEYKKAGILTRLDVAFSREQTPKKIYVQD 575 (645)
T ss_pred EEcCCCcchhhHHHHHHHHHhhhcCccCCcceEEEEeCCCchHHHHHHHHHHHHHhcCcchhheeeeeccCCCCceehhh
Confidence 79999999999999999987644321 128999999999777799999999977754 45999999998 67999999
Q ss_pred HHhhcHHhhccccCCCCcEEEEeecC
Q psy12843 76 SFESRVEAKIPYLGWDSTYIILIIRP 101 (103)
Q Consensus 76 ~l~~~~~~l~~~l~~~~~~~yvcg~p 101 (103)
.+++..+.|+++|..+++++||||.-
T Consensus 576 ~l~e~~d~v~~~L~~~~g~iYvCGd~ 601 (645)
T KOG1158|consen 576 RLREYADEVWELLKKEGGHIYVCGDA 601 (645)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEecCC
Confidence 99999999999999889999999964
No 12
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.90 E-value=2e-23 Score=153.86 Aligned_cols=99 Identities=33% Similarity=0.616 Sum_probs=83.6
Q ss_pred CccccccHHHHHHHHHHHHhc---cc-CCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCCCccchhH
Q psy12843 1 MVGPGTGIAPFRSYIHTRISN---QT-ASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQEEKITNNL 75 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~---~~-~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~~~g~v~~ 75 (103)
|||||||||||+||++++... +. .++ ++||||+|+.+.|++|.+||++|++. .+++++.++||+++.++|||+
T Consensus 270 mIa~GtGIAP~~s~l~~~~~~~~~~~~~~~--v~L~~G~R~~~~d~ly~~el~~~~~~~~~~~l~~a~Sr~~~~k~yVq~ 347 (416)
T cd06204 270 MIGPGTGVAPFRGFIQERAALKESGKKVGP--TLLFFGCRHPDEDFIYKDELEEYAKLGGLLELVTAFSREQPKKVYVQH 347 (416)
T ss_pred EEeCCcchHHHHHHHHHHHHHhhccCccCC--EEEEEcCCCCCcccchHHHHHHHHHcCCceEEEEEECcCCCCCcchHH
Confidence 799999999999999987542 21 344 99999999974599999999999987 678899999998767899999
Q ss_pred HHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 76 SFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 76 ~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+|.+..+.++.++. ++++|||||++.
T Consensus 348 ~i~~~~~~~~~~l~-~~~~vYvCGp~~ 373 (416)
T cd06204 348 RLAEHAEQVWELIN-EGAYIYVCGDAK 373 (416)
T ss_pred HHHHhHHHHHHHHH-cCCEEEEECCcc
Confidence 99987777777765 469999999874
No 13
>PRK06214 sulfite reductase; Provisional
Probab=99.89 E-value=3e-23 Score=156.46 Aligned_cols=98 Identities=32% Similarity=0.509 Sum_probs=83.8
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCCCccchhHHHhh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQEEKITNNLSFES 79 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~~~g~v~~~l~~ 79 (103)
|||+|||||||+||+++++.....++ ++||||+|+.+.|++|.+||++|.+. ..+++++++||++..++|||+.|.+
T Consensus 388 mIg~GTGIAPfrsfLq~r~~~~~~g~--~~LffG~R~~~~D~ly~dEL~~l~~~g~l~~l~~afSRd~~~k~YVQ~~L~e 465 (530)
T PRK06214 388 MVGPGTGIAPFRAFLHERAATKAPGR--NWLFFGHQRSATDFFYEDELNGLKAAGVLTRLSLAWSRDGEEKTYVQDRMRE 465 (530)
T ss_pred EEcCCeeHHHHHHHHHHHHHhcCCCC--eEEEEEecCChhhhHHHHHHHHHHHhCCceEEEEEEecCCCCCCchhhHHHH
Confidence 79999999999999999876544455 99999997643799999999999987 4456889999988778999999998
Q ss_pred cHHhhccccCCCCcEEEEeecC
Q psy12843 80 RVEAKIPYLGWDSTYIILIIRP 101 (103)
Q Consensus 80 ~~~~l~~~l~~~~~~~yvcg~p 101 (103)
+.+.++.++. ++++|||||++
T Consensus 466 ~~~~l~~~l~-~~a~iYVCGp~ 486 (530)
T PRK06214 466 NGAELWKWLE-EGAHFYVCGDA 486 (530)
T ss_pred HHHHHHhhhc-CCcEEEEeCCh
Confidence 8888888775 58999999985
No 14
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.89 E-value=3.9e-23 Score=145.78 Aligned_cols=99 Identities=26% Similarity=0.396 Sum_probs=83.2
Q ss_pred CccccccHHHHHHHHHHHHhcc-----cCCCceEEEEEeeccCCCccccHHHHHHHHhC-C-CeEEEEEEeCCCC----C
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQ-----TASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-N-QLTLYTAFSRDQE----E 69 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~-----~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~-~~~~~~~~s~~~~----~ 69 (103)
|||||||||||+||+++++... ..++ ++|+||+|+. +|++|.++|++|+++ + ++++++++|++++ .
T Consensus 140 lIagGtGIaP~~s~l~~~~~~~~~~~~~~~~--v~L~~g~r~~-~d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~~~g~ 216 (286)
T cd06208 140 MIATGTGIAPFRSFLRRLFREKHADYKFTGL--AWLFFGVPNS-DSLLYDDELEKYPKQYPDNFRIDYAFSREQKNADGG 216 (286)
T ss_pred EEecCccHHHHHHHHHHHHHhhhcccCCCCC--EEEEEEecCc-cchhHHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCC
Confidence 6999999999999999988652 2334 9999999999 799999999999986 4 7999999998753 5
Q ss_pred ccchhHHHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 70 KITNNLSFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 70 ~g~v~~~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+|||++.+.+..+.+...+...++.+|+||+|+
T Consensus 217 ~g~v~~~i~~~~~~l~~~l~~~~~~vYiCGp~~ 249 (286)
T cd06208 217 KMYVQDRIAEYAEEIWNLLDKDNTHVYICGLKG 249 (286)
T ss_pred ceehhhHHHHhHHHHHHHHhcCCcEEEEeCCch
Confidence 789999998876666666666678999999985
No 15
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.89 E-value=5.9e-23 Score=142.11 Aligned_cols=97 Identities=26% Similarity=0.355 Sum_probs=81.2
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCCCccchhHHHhh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQEEKITNNLSFES 79 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~~~g~v~~~l~~ 79 (103)
|||||||||||+||++++..++. ++ ++|+||+|+.+.|++|.+||++|+++ +++++++++|+++..++||++.+.+
T Consensus 114 lIAgGtGIaP~~s~l~~~~~~~~-~~--~~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~~s~~~~~~~~v~~~l~~ 190 (245)
T cd06200 114 LIGNGTGLAGLRSHLRARARAGR-HR--NWLLFGERQAAHDFFCREELEAWQAAGHLARLDLAFSRDQAQKRYVQDRLRA 190 (245)
T ss_pred EEecCcChHHHHHHHHHHHhccC-CC--eEEEEecCCccccHhHHHHHHHHHHCCCcceEEEEEccCCCCCcchHHHHHH
Confidence 69999999999999999886542 34 99999999972389999999999887 7788888999877668999999987
Q ss_pred cHHhhccccCCCCcEEEEeecC
Q psy12843 80 RVEAKIPYLGWDSTYIILIIRP 101 (103)
Q Consensus 80 ~~~~l~~~l~~~~~~~yvcg~p 101 (103)
..+.+..++. .+.++|+||+|
T Consensus 191 ~~~~~~~~~~-~~~~vy~CGp~ 211 (245)
T cd06200 191 AADELRAWVA-EGAAIYVCGSL 211 (245)
T ss_pred hHHHHHHHHH-CCcEEEEECCc
Confidence 7666655554 46899999998
No 16
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.89 E-value=6.8e-23 Score=145.93 Aligned_cols=98 Identities=23% Similarity=0.398 Sum_probs=80.2
Q ss_pred CccccccHHHHHHHHHHHHhccc-----CCCceEEEEEeeccCCCccccHHHHHHHHhC-C-CeEEEEEEeCCCC----C
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQT-----ASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-N-QLTLYTAFSRDQE----E 69 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~-----~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~-~~~~~~~~s~~~~----~ 69 (103)
|||||||||||+||+++++..+. .++ ++||||+|+. +|++|.+||++|+++ + +|+++.++|++++ .
T Consensus 161 lIAgGtGIaP~~sml~~~l~~~~~~~~~~~~--v~L~~g~R~~-~d~~~~deL~~l~~~~~~~~~~~~~~sr~~~~~~g~ 237 (307)
T PLN03116 161 MVATGTGIAPFRGFLRRMFMEDVPAFKFGGL--AWLFLGVANS-DSLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGG 237 (307)
T ss_pred EEecCccHHHHHHHHHHHHhhccccccCCCc--EEEEEecCCc-ccchHHHHHHHHHHhCCCcEEEEEEEccCCcccCCC
Confidence 69999999999999999876442 233 9999999999 799999999999887 5 7999999998754 4
Q ss_pred ccchhHHHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 70 KITNNLSFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 70 ~g~v~~~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+|||++.|.+..+.+...+. .++.+|+||+|.
T Consensus 238 ~g~v~~~l~~~~~~~~~~~~-~~~~vYiCGp~~ 269 (307)
T PLN03116 238 KMYVQDKIEEYSDEIFKLLD-NGAHIYFCGLKG 269 (307)
T ss_pred ccchhhHHHHHHHHHHhhhc-CCcEEEEeCCHH
Confidence 78999988876555544443 468999999874
No 17
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.88 E-value=4.4e-22 Score=139.42 Aligned_cols=99 Identities=34% Similarity=0.590 Sum_probs=82.0
Q ss_pred CccccccHHHHHHHHHHHHhc----ccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCC-Cccchh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISN----QTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQE-EKITNN 74 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~----~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~-~~g~v~ 74 (103)
|||||||||||+||+++++.. ...++ ++|+||+|+.++|++|.++|++|+++ ++++++.++|+++. ..+||+
T Consensus 120 lIAgGtGIaP~~s~l~~~~~~~~~~~~~~~--v~l~~g~r~~~~d~~~~del~~~~~~~~~~~~~~~~S~~~~~~~~~v~ 197 (267)
T cd06182 120 MVGPGTGIAPFRGFLQERAALRANGKARGP--AWLFFGCRNFASDYLYREELQEALKDGALTRLDVAFSREQAEPKVYVQ 197 (267)
T ss_pred EEecCccHHHHHHHHHHHHHhhhccccCCC--EEEEEeCCCCcccccHHHHHHHHHhCCCcceEEEEEccCCCCCceehH
Confidence 699999999999999998863 22344 99999999984499999999999987 68899999998765 378999
Q ss_pred HHHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 75 LSFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 75 ~~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+.+.+..+.+..++. ++..||+||+|+
T Consensus 198 ~~l~~~~~~l~~~l~-~~~~vyvCGp~~ 224 (267)
T cd06182 198 DKLKEHAEELRRLLN-EGAHIYVCGDAK 224 (267)
T ss_pred HHHHHhHHHHHHHHh-cCCEEEEECCcc
Confidence 998877666666554 456999999986
No 18
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.87 E-value=6.2e-22 Score=145.84 Aligned_cols=98 Identities=27% Similarity=0.331 Sum_probs=80.1
Q ss_pred CccccccHHHHHHHHHHHHhc---ccCCCceEEEEEeeccCCCccccHHHHHHHHhCCCeEEEEEEeCCCC-CccchhHH
Q psy12843 1 MVGPGTGIAPFRSYIHTRISN---QTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLYTAFSRDQE-EKITNNLS 76 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~---~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~s~~~~-~~g~v~~~ 76 (103)
|||||||||||+||++++... +..++ ++||||+|+. +|++|.+||++|.+. .+++++++|++++ .+||||+.
T Consensus 272 lIagGtGIAP~~s~l~~~~~~~~~~~~~~--v~L~~G~Rt~-~dl~y~~eL~~l~~~-~~~~~~~~sr~~~~~~g~V~d~ 347 (411)
T TIGR03224 272 MICTGTGSAPMRAMTERRRRRRDHGEGGK--LMLFFGARTK-EELPYFGPLQKLPKD-FIDINFAFSRTPEQPKRYVQDA 347 (411)
T ss_pred EEecccCcHHHHHHHHHHHHHhhcCCCCC--EEEEEecCcc-ccchHHHHHHHHHhc-CceEEEEeccCCccCcccHhhH
Confidence 799999999999999998753 22344 9999999999 799999999999864 3456668888653 68999999
Q ss_pred HhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 77 FESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 77 l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+.+....+..++...+++||+||+|.
T Consensus 348 l~~~~~~v~~ll~~~~~~vYiCGp~~ 373 (411)
T TIGR03224 348 IRERAADVAALLKDPNTYIYICGLKG 373 (411)
T ss_pred HHHhHHHHHHHHhcCCcEEEEECCHH
Confidence 99877777776765678999999874
No 19
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.86 E-value=1.8e-21 Score=134.92 Aligned_cols=99 Identities=23% Similarity=0.273 Sum_probs=76.7
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC--CCeEEEEEEeCCCC---CccchhH
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA--NQLTLYTAFSRDQE---EKITNNL 75 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~--~~~~~~~~~s~~~~---~~g~v~~ 75 (103)
|||||||||||+||++++..+...++ ++|+||+|+. +|++|.+||++|+++ +++++..++|+++. .+|+|++
T Consensus 111 lIagGtGItP~~s~l~~~~~~~~~~~--v~l~~g~r~~-~d~~~~~el~~l~~~~~~~~~v~~~~s~~~~~~~~~G~v~~ 187 (248)
T PRK10926 111 MLATGTAIGPYLSILQEGKDLERFKN--LVLVHAARYA-ADLSYLPLMQELEQRYEGKLRIQTVVSRETAPGSLTGRVPA 187 (248)
T ss_pred EEEeeeeHHHHHHHHHhhHhhCCCCc--EEEEEeCCcH-HHHHHHHHHHHHHHhCcCCEEEEEEECCCCCCCCcCCccch
Confidence 69999999999999999876554444 9999999999 799999999999876 47999999998653 4688887
Q ss_pred HHhhc-HHhhcc-ccCCCCcEEEEeecCC
Q psy12843 76 SFESR-VEAKIP-YLGWDSTYIILIIRPE 102 (103)
Q Consensus 76 ~l~~~-~~~l~~-~l~~~~~~~yvcg~p~ 102 (103)
.+.+. ...... .+...+..+|+||+|.
T Consensus 188 ~i~~~~l~~~~~~~~~~~~~~vy~CGp~~ 216 (248)
T PRK10926 188 LIESGELEAAVGLPMDAETSHVMLCGNPQ 216 (248)
T ss_pred hhhcchHHHHhcCCCCccCCEEEEECCHH
Confidence 76542 111111 2234578999999974
No 20
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.85 E-value=2.2e-21 Score=137.18 Aligned_cols=95 Identities=25% Similarity=0.462 Sum_probs=77.9
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCCCccchhHHHhh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQEEKITNNLSFES 79 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~~~g~v~~~l~~ 79 (103)
|||||||||||+||+++.. ..++ ++|+||+|+.++|++|.+||++|+++ ++++++.++|++. .++||++.+..
T Consensus 160 lIAgGtGIaP~~s~l~~~~---~~~~--v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~-~~g~v~~~l~~ 233 (289)
T cd06201 160 LIGAGTGIAPLAGFIRANA---ARRP--MHLYWGGRDPASDFLYEDELDQYLADGRLTQLHTAFSRTP-DGAYVQDRLRA 233 (289)
T ss_pred EEecCcCHHHHHHHHHhhh---ccCC--EEEEEEecCcccchHHHHHHHHHHHcCCCceEEEEECCCC-CcccchhHHHH
Confidence 6999999999999999863 2344 99999999972389999999999887 7788888999876 48999998887
Q ss_pred cHHhhccccCCCCcEEEEeecCC
Q psy12843 80 RVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 80 ~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
..+.+..++. .++.+|+||+|.
T Consensus 234 ~~~~l~~~~~-~~~~vyiCGp~~ 255 (289)
T cd06201 234 DAERLRRLIE-DGAQIMVCGSRA 255 (289)
T ss_pred hHHHHHHHHH-CCcEEEEECCHH
Confidence 6666655554 478999999873
No 21
>PRK08051 fre FMN reductase; Validated
Probab=99.84 E-value=4.3e-21 Score=131.67 Aligned_cols=93 Identities=18% Similarity=0.232 Sum_probs=75.6
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCC----CccchhH
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQE----EKITNNL 75 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~----~~g~v~~ 75 (103)
||||||||||+++|+++++..+...+ ++|+||+|+. +|++|.+||++|+++ ++++++.+++++++ .+|++++
T Consensus 107 liagG~GiaP~~~~l~~~~~~~~~~~--v~l~~g~r~~-~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v~~ 183 (232)
T PRK08051 107 LIAGGTGFSYARSILLTALAQGPNRP--ITLYWGGREE-DHLYDLDELEALALKHPNLHFVPVVEQPEEGWQGKTGTVLT 183 (232)
T ss_pred EEecCcCcchHHHHHHHHHHhCCCCc--EEEEEEeccH-HHhhhhHHHHHHHHHCCCcEEEEEeCCCCCCcccceeeehH
Confidence 68999999999999999987655454 9999999999 799999999999987 88999888887653 4678877
Q ss_pred HHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 76 SFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 76 ~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
.+.+. +.+..+.++|+||+|.
T Consensus 184 ~l~~~------~~~~~~~~vyicGp~~ 204 (232)
T PRK08051 184 AVMQD------FGSLAEYDIYIAGRFE 204 (232)
T ss_pred HHHhh------ccCcccCEEEEECCHH
Confidence 65432 1223457899999884
No 22
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.84 E-value=8.7e-21 Score=136.69 Aligned_cols=93 Identities=18% Similarity=0.261 Sum_probs=76.8
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCC----CccchhH
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQE----EKITNNL 75 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~----~~g~v~~ 75 (103)
|||||||||||+||+++++.++..++ ++|+||+|+. +|++|.++|++|+++ ++|+++.+++++++ .+|+|++
T Consensus 214 liagGtGiaP~~s~l~~~~~~~~~~~--v~l~~g~r~~-~dl~~~~el~~~~~~~~~~~~~~~~s~~~~~~~g~~g~v~~ 290 (340)
T PRK11872 214 FVAGGTGLSAFLGMLDELAEQGCSPP--VHLYYGVRHA-ADLCELQRLAAYAERLPNFRYHPVVSKASADWQGKRGYIHE 290 (340)
T ss_pred EEeCCcCccHHHHHHHHHHHcCCCCc--EEEEEecCCh-HHhccHHHHHHHHHHCCCcEEEEEEeCCCCcCCCceeeccH
Confidence 69999999999999999987655454 9999999999 899999999999987 89999988887543 5788888
Q ss_pred HHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 76 SFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 76 ~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
.+.+.. +.+.++++|+||+|.
T Consensus 291 ~l~~~~------l~~~~~~vy~CGp~~ 311 (340)
T PRK11872 291 HFDKAQ------LRDQAFDMYLCGPPP 311 (340)
T ss_pred HHHHhh------cCcCCCEEEEeCCHH
Confidence 776421 233467899999984
No 23
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.84 E-value=1e-20 Score=133.12 Aligned_cols=97 Identities=15% Similarity=0.274 Sum_probs=76.4
Q ss_pred CccccccHHHHHHHHHHHHhcccC-CCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCC--C----Cccc
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTA-SAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQ--E----EKIT 72 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~-~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~--~----~~g~ 72 (103)
|||||||||||+||+++++.++.. .+ ++|+||+|+. +|++|.++|++|+++ +++++++++|++. + .+||
T Consensus 155 lIAgGtGItP~~s~l~~~~~~~~~~~~--v~l~~g~r~~-~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~ 231 (283)
T cd06188 155 FIGGGAGMAPLRSHIFHLLKTLKSKRK--ISFWYGARSL-KELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGF 231 (283)
T ss_pred EEEecccHhHHHHHHHHHHhcCCCCce--EEEEEecCCH-HHhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCccee
Confidence 699999999999999998765432 44 9999999999 899999999999876 8899888888753 1 4689
Q ss_pred hhHHHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 73 NNLSFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 73 v~~~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
|++.+.+.. +.......+..+|+||+|.
T Consensus 232 v~~~~~~~~--~~~~~~~~~~~vyiCGP~~ 259 (283)
T cd06188 232 IHQVLLENY--LKKHPAPEDIEFYLCGPPP 259 (283)
T ss_pred ecHHHHHHH--hccCCCCCCeEEEEECCHH
Confidence 988776532 2222234567899999874
No 24
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.84 E-value=2e-20 Score=127.42 Aligned_cols=93 Identities=19% Similarity=0.350 Sum_probs=76.2
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCC----CccchhH
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQE----EKITNNL 75 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~----~~g~v~~ 75 (103)
||||||||||+++|+++++.+....+ ++|+|++|+. +|++|.++|++|+++ +++++..++|++++ ..|++++
T Consensus 103 liagG~GiaP~~~~l~~l~~~~~~~~--v~l~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~ 179 (224)
T cd06189 103 LIAGGTGFAPIKSILEHLLAQGSKRP--IHLYWGARTE-EDLYLDELLEAWAEAHPNFTYVPVLSEPEEGWQGRTGLVHE 179 (224)
T ss_pred EEecCcCHHHHHHHHHHHHhcCCCCC--EEEEEecCCh-hhccCHHHHHHHHHhCCCeEEEEEeCCCCcCCccccccHHH
Confidence 69999999999999999987654444 9999999999 899999999999986 89999888988643 5678887
Q ss_pred HHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 76 SFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 76 ~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
.+.+.. ....+.++|+||+|.
T Consensus 180 ~l~~~~------~~~~~~~v~vCGp~~ 200 (224)
T cd06189 180 AVLEDF------PDLSDFDVYACGSPE 200 (224)
T ss_pred HHHhhc------cCccccEEEEECCHH
Confidence 665421 233578899999873
No 25
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.84 E-value=1.4e-20 Score=129.22 Aligned_cols=94 Identities=19% Similarity=0.313 Sum_probs=75.6
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCC------Cccch
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQE------EKITN 73 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~------~~g~v 73 (103)
||||||||||+++|+++++.++...+ ++|+|++|+. +|++|.++|++|+++ ++++++.++|++.+ .+|++
T Consensus 114 ~iagG~GiaP~~~~l~~~~~~~~~~~--v~l~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~g~v 190 (238)
T cd06211 114 FIAGGSGLSSPRSMILDLLERGDTRK--ITLFFGARTR-AELYYLDEFEALEKDHPNFKYVPALSREPPESNWKGFTGFV 190 (238)
T ss_pred EEeCCcCHHHHHHHHHHHHhcCCCCc--EEEEEecCCh-hhhccHHHHHHHHHhCCCeEEEEEECCCCCCcCcccccCcH
Confidence 68999999999999999987665444 9999999999 799999999999877 88999888997542 46888
Q ss_pred hHHHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 74 NLSFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 74 ~~~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
++.+.+... -..++..+|+||+|.
T Consensus 191 ~~~l~~~~~-----~~~~~~~vyvCGp~~ 214 (238)
T cd06211 191 HDAAKKHFK-----NDFRGHKAYLCGPPP 214 (238)
T ss_pred HHHHHHhcc-----cccccCEEEEECCHH
Confidence 876654211 023568999999974
No 26
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.82 E-value=3.9e-20 Score=132.90 Aligned_cols=93 Identities=14% Similarity=0.215 Sum_probs=75.4
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCC------CCccch
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQ------EEKITN 73 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~------~~~g~v 73 (103)
||||||||||++||+++++..+..++ ++|+||+|+. +|+++.+++++|+++ ++|++++++|++. +.+|++
T Consensus 209 lIagGtGiaP~~s~l~~~~~~~~~~~--i~l~~g~r~~-~dl~~~e~l~~~~~~~~~~~~~~~~s~~~~~~~~~g~~G~v 285 (339)
T PRK07609 209 LLASGTGFAPIKSIVEHLRAKGIQRP--VTLYWGARRP-EDLYLSALAEQWAEELPNFRYVPVVSDALDDDAWTGRTGFV 285 (339)
T ss_pred EEecCcChhHHHHHHHHHHhcCCCCc--EEEEEecCCh-HHhccHHHHHHHHHhCCCeEEEEEecCCCCCCCccCccCcH
Confidence 69999999999999999987665555 9999999999 799999999999876 8999999999742 156888
Q ss_pred hHHHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 74 NLSFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 74 ~~~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
++.+.+.. ....+..+|+||+|.
T Consensus 286 ~~~~~~~~------~~~~~~~vy~CGp~~ 308 (339)
T PRK07609 286 HQAVLEDF------PDLSGHQVYACGSPV 308 (339)
T ss_pred HHHHHhhc------ccccCCEEEEECCHH
Confidence 87765421 123468999999874
No 27
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.82 E-value=3.3e-20 Score=131.20 Aligned_cols=93 Identities=22% Similarity=0.354 Sum_probs=71.8
Q ss_pred CccccccHHHHHHHHHHHHhcc-cCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCCC---------
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQ-TASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQEE--------- 69 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~-~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~~--------- 69 (103)
|||||||||||+||+++++.+. ...+ ++|+|++|+. +|++|.+||++|+++ ++|+++.+++++++.
T Consensus 113 lIAgGtGIaP~~s~l~~~l~~~~~~~~--v~l~~~~r~~-~d~~~~deL~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 189 (289)
T PRK08345 113 LIAGGLGMAPLRSVLLYAMDNRWKYGN--ITLIYGAKYY-EDLLFYDELIKDLAEAENVKIIQSVTRDPEWPGCHGLPQG 189 (289)
T ss_pred EEecccchhHHHHHHHHHHhcCCCCCc--EEEEEecCCH-HHhhHHHHHHHHHhcCCCEEEEEEecCCCCCcCccccccc
Confidence 6999999999999999988765 2344 9999999999 899999999999876 889999999885431
Q ss_pred ------ccchhHHHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 70 ------KITNNLSFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 70 ------~g~v~~~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+|++++.+.+ ...+..+..+|+||+|+
T Consensus 190 ~~~~~~~g~v~~~~~~------~~~~~~~~~vyiCGP~~ 222 (289)
T PRK08345 190 FIERVCKGVVTDLFRE------ANTDPKNTYAAICGPPV 222 (289)
T ss_pred cccccccCchhhhhhh------cCCCccccEEEEECCHH
Confidence 2344433322 12334567899999984
No 28
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.82 E-value=6e-20 Score=126.27 Aligned_cols=99 Identities=21% Similarity=0.283 Sum_probs=77.1
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC--CCeEEEEEEeCCCC---CccchhH
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA--NQLTLYTAFSRDQE---EKITNNL 75 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~--~~~~~~~~~s~~~~---~~g~v~~ 75 (103)
|||||||||||++|+++++.....++ ++|+|++|+. +|++|.++|++|+++ ++|+++++++++++ .+||+++
T Consensus 106 lIagGtGiaP~~~~l~~~~~~~~~~~--v~l~~~~r~~-~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~g~v~~ 182 (241)
T cd06195 106 LLATGTGIAPFLSMLRDLEIWERFDK--IVLVHGVRYA-EELAYQDEIEALAKQYNGKFRYVPIVSREKENGALTGRIPD 182 (241)
T ss_pred EEeeccchhhHHHHHHHHHhhCCCCc--EEEEEccCCH-HHhhhHHHHHHHHhhcCCCEEEEEEECcCCccCCCceEhHH
Confidence 68999999999999999986544444 9999999999 899999999999875 68999889988764 3688988
Q ss_pred HHhh-cHHhhcc-ccCCCCcEEEEeecCC
Q psy12843 76 SFES-RVEAKIP-YLGWDSTYIILIIRPE 102 (103)
Q Consensus 76 ~l~~-~~~~l~~-~l~~~~~~~yvcg~p~ 102 (103)
.+.+ ....... .+.+.+..+|+||+|.
T Consensus 183 ~l~~~~l~~~~~~~~~~~~~~vyiCGp~~ 211 (241)
T cd06195 183 LIESGELEEHAGLPLDPETSHVMLCGNPQ 211 (241)
T ss_pred hhhhchhhHhhCCCCCcccCEEEEeCCHH
Confidence 7663 2222111 1233578999999874
No 29
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.82 E-value=6e-20 Score=125.27 Aligned_cols=93 Identities=22% Similarity=0.281 Sum_probs=76.7
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCC---CccchhHH
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQE---EKITNNLS 76 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~---~~g~v~~~ 76 (103)
||||||||||++++++++..+...++ ++|+|++|+. +|++|.++|++|.++ ++++++.++++++. .+|++++.
T Consensus 107 lia~GtGIaP~~~ll~~~~~~~~~~~--v~l~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~g~v~~~ 183 (228)
T cd06209 107 MLAGGTGLAPFLSMLDVLAEDGSAHP--VHLVYGVTRD-ADLVELDRLEALAERLPGFSFRTVVADPDSWHPRKGYVTDH 183 (228)
T ss_pred EEEcccCHhHHHHHHHHHHhcCCCCc--EEEEEecCCH-HHhccHHHHHHHHHhCCCeEEEEEEcCCCccCCCcCCccHH
Confidence 69999999999999999987664444 9999999999 799999999999877 89999999987653 56788877
Q ss_pred HhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 77 FESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 77 l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+.+. .+...++.+|+||+|.
T Consensus 184 ~~~~------~~~~~~~~v~icGp~~ 203 (228)
T cd06209 184 LEAE------DLNDGDVDVYLCGPPP 203 (228)
T ss_pred HHHh------hccCCCcEEEEeCCHH
Confidence 6643 1333567899999874
No 30
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.82 E-value=4e-20 Score=126.60 Aligned_cols=94 Identities=21% Similarity=0.277 Sum_probs=74.6
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCC----CccchhH
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQE----EKITNNL 75 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~----~~g~v~~ 75 (103)
||||||||||+++|+++++.+....+ ++|+|++|+. +|++|.++|++|+++ +++++++++|++.+ ..|++++
T Consensus 113 liagGtGiaP~~~~l~~~~~~~~~~~--v~l~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~g~~~~ 189 (236)
T cd06210 113 FVAGGTGLAPLLSMLRRMAEWGEPQE--ARLFFGVNTE-AELFYLDELKRLADSLPNLTVRICVWRPGGEWEGYRGTVVD 189 (236)
T ss_pred EEccCcchhHHHHHHHHHHhcCCCce--EEEEEecCCH-HHhhhHHHHHHHHHhCCCeEEEEEEcCCCCCcCCccCcHHH
Confidence 68999999999999999887654444 9999999999 899999999999987 89999999887542 4677777
Q ss_pred HHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 76 SFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 76 ~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
.+.+... . ...+..+|+||+|+
T Consensus 190 ~l~~~l~---~--~~~~~~vyicGp~~ 211 (236)
T cd06210 190 ALREDLA---S--SDAKPDIYLCGPPG 211 (236)
T ss_pred HHHHhhc---c--cCCCcEEEEeCCHH
Confidence 6654211 1 12457899999874
No 31
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.82 E-value=5.3e-20 Score=125.84 Aligned_cols=93 Identities=18% Similarity=0.334 Sum_probs=74.9
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCC------Cccch
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQE------EKITN 73 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~------~~g~v 73 (103)
||||||||||+++|+++++.++..++ ++|+|++|+. +++++.++|++|+++ +++++++++|++.. ..|++
T Consensus 108 ~iagG~Giap~~~~l~~~~~~~~~~~--v~l~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~g~~ 184 (232)
T cd06212 108 LIGGGSGMAPLLSLLRDMAASGSDRP--VRFFYGARTA-RDLFYLEEIAALGEKIPDFTFIPALSESPDDEGWSGETGLV 184 (232)
T ss_pred EEecCcchhHHHHHHHHHHhcCCCCc--EEEEEeccch-HHhccHHHHHHHHHhCCCEEEEEEECCCCCCCCCcCCcccH
Confidence 69999999999999999988765454 9999999999 899999999999876 88998888887542 36777
Q ss_pred hHHHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 74 NLSFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 74 ~~~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
++.+.+.. .+..+.++|+||+|+
T Consensus 185 ~~~~~~~~------~~~~~~~v~~CGp~~ 207 (232)
T cd06212 185 TEVVQRNE------ATLAGCDVYLCGPPP 207 (232)
T ss_pred HHHHHhhc------cCccCCEEEEECCHH
Confidence 77554321 122568899999974
No 32
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.82 E-value=3.7e-20 Score=125.03 Aligned_cols=99 Identities=22% Similarity=0.394 Sum_probs=72.6
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCCCccchhHHHhh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQEEKITNNLSFES 79 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~~~g~v~~~l~~ 79 (103)
||||||||||+++|++++..+...++ ++|+|++|+. +|++|.++|++|++. +++++++++++++....+....+..
T Consensus 102 ~ia~G~Giap~~~~l~~~~~~~~~~~--v~l~~~~r~~-~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (223)
T cd00322 102 LIAGGIGITPFRSMLRHLAADKPGGE--ITLLYGARTP-ADLLFLDELEELAKEGPNFRLVLALSRESEAKLGPGGRIDR 178 (223)
T ss_pred EEecCCchhHHHHHHHHHHhhCCCCc--EEEEEecCCH-HHhhHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceeeH
Confidence 69999999999999999987654444 9999999999 799999999999987 8899999998876422122211111
Q ss_pred cHHhhccccCCCCcEEEEeecCC
Q psy12843 80 RVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 80 ~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
............++.+|+||+|.
T Consensus 179 ~~~~~~~~~~~~~~~~yvCGp~~ 201 (223)
T cd00322 179 EAEILALLPDDSGALVYICGPPA 201 (223)
T ss_pred HHHHHhhcccccCCEEEEECCHH
Confidence 01111122344688999999984
No 33
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.81 E-value=7.1e-20 Score=125.09 Aligned_cols=94 Identities=17% Similarity=0.226 Sum_probs=74.4
Q ss_pred CccccccHHHHHHHHHHHHhcc--cCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCC--------C
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQ--TASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQE--------E 69 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~--~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~--------~ 69 (103)
||||||||||+++|++++.... ... +++|+|++|+. +|++|.++|++|.+. +++++++++++++. .
T Consensus 102 lIagG~GiaP~~~~l~~~~~~~~~~~~--~v~l~~~~r~~-~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~ 178 (232)
T cd06190 102 CIAGGSGLAPMLSILRGAARSPYLSDR--PVDLFYGGRTP-SDLCALDELSALVALGARLRVTPAVSDAGSGSAAGWDGP 178 (232)
T ss_pred EEeeCcCHHHHHHHHHHHHhcccCCCC--eEEEEEeecCH-HHHhhHHHHHHHHHhCCCEEEEEEeCCCCCCcCCCccCC
Confidence 6999999999999999998752 233 49999999999 799999999999987 78998888886542 3
Q ss_pred ccchhHHHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 70 KITNNLSFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 70 ~g~v~~~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+|++++.+.+.... ..++..+|+||+|.
T Consensus 179 ~g~v~~~l~~~~~~-----~~~~~~vyiCGp~~ 206 (232)
T cd06190 179 TGFVHEVVEATLGD-----RLAEFEFYFAGPPP 206 (232)
T ss_pred cCcHHHHHHhhccC-----CccccEEEEECCHH
Confidence 57788766543211 13578999999874
No 34
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.81 E-value=1.2e-19 Score=123.22 Aligned_cols=93 Identities=20% Similarity=0.336 Sum_probs=76.0
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCC----CccchhH
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQE----EKITNNL 75 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~----~~g~v~~ 75 (103)
||||||||||++||++++..++...+ ++|+|++|+. +|+++.++|++|+++ ++++++++++++++ .+|++++
T Consensus 103 liagG~GI~p~~sll~~~~~~~~~~~--v~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 179 (224)
T cd06187 103 CIAGGTGLAPLRAIVEDALRRGEPRP--VHLFFGARTE-RDLYDLEGLLALAARHPWLRVVPVVSHEEGAWTGRRGLVTD 179 (224)
T ss_pred EEecCcCHHHHHHHHHHHHhcCCCCC--EEEEEecCCh-hhhcChHHHHHHHHhCCCeEEEEEeCCCCCccCCCcccHHH
Confidence 68999999999999999987664444 9999999999 899999999999877 88998888887542 5688888
Q ss_pred HHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 76 SFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 76 ~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
.+.+.. ....++.+|+||+|.
T Consensus 180 ~~~~~~------~~~~~~~v~vcGp~~ 200 (224)
T cd06187 180 VVGRDG------PDWADHDIYICGPPA 200 (224)
T ss_pred HHHHhc------cccccCEEEEECCHH
Confidence 775431 133578999999874
No 35
>KOG1159|consensus
Probab=99.81 E-value=2.3e-20 Score=137.78 Aligned_cols=95 Identities=39% Similarity=0.646 Sum_probs=84.7
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhCCCeEEEEEEeCCCCCccchhHHHhhc
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLYTAFSRDQEEKITNNLSFESR 80 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~s~~~~~~g~v~~~l~~~ 80 (103)
||+.|||+||++|++++...++... ..||||||+.+.|++|.+|+.++.+.. ++.++||+++.+-|||+.|.+.
T Consensus 437 mVGPGTGvAPfRa~i~er~~q~~~~---~~lFfGCR~K~~Df~y~~eW~~~~~~~---~~~AFSRDqe~kvYVQh~i~e~ 510 (574)
T KOG1159|consen 437 MVGPGTGVAPFRALIQERIYQGDKE---NVLFFGCRNKDKDFLYEDEWTELNKRA---FHTAFSRDQEQKVYVQHKIREN 510 (574)
T ss_pred EEcCCCCcccHHHHHHHHHhhccCC---ceEEEecccCCccccccchhhhhhcch---hhhhcccccccceeHHHHHHHh
Confidence 6899999999999999998765433 789999999999999999998876543 4568999999999999999999
Q ss_pred HHhhccccCCCCcEEEEeecC
Q psy12843 81 VEAKIPYLGWDSTYIILIIRP 101 (103)
Q Consensus 81 ~~~l~~~l~~~~~~~yvcg~p 101 (103)
.+.+++++.+.++.|||||+-
T Consensus 511 g~~v~~Ll~~~gA~~fvaGsS 531 (574)
T KOG1159|consen 511 GEEVWDLLDNLGAYFFVAGSS 531 (574)
T ss_pred hHHHHHHHhccCCEEEEecCC
Confidence 999999999999999999985
No 36
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.81 E-value=1e-19 Score=132.98 Aligned_cols=93 Identities=18% Similarity=0.190 Sum_probs=73.2
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCC---------Cc
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQE---------EK 70 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~---------~~ 70 (103)
||||||||||++||+++++.+....+ ++||||+|+. +|++|.++|++|+++ +++++++++|++.. ..
T Consensus 266 lIagGtGIaP~~s~l~~~~~~~~~~~--v~l~~~~r~~-~~~~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 342 (399)
T PRK13289 266 LISGGVGITPMLSMLETLAAQQPKRP--VHFIHAARNG-GVHAFRDEVEALAARHPNLKAHTWYREPTEQDRAGEDFDSE 342 (399)
T ss_pred EEecCccHHHHHHHHHHHHhcCCCCC--EEEEEEeCCh-hhchHHHHHHHHHHhCCCcEEEEEECCCccccccCCccccc
Confidence 69999999999999999987655454 9999999999 799999999999887 79999999987542 12
Q ss_pred cchhHHHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 71 ITNNLSFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 71 g~v~~~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
|+++.. .+...+.+.++++|+||+|.
T Consensus 343 g~i~~~------~l~~~~~~~~~~vyiCGp~~ 368 (399)
T PRK13289 343 GLMDLE------WLEAWLPDPDADFYFCGPVP 368 (399)
T ss_pred CcccHH------HHHhhCCCCCCEEEEECCHH
Confidence 555432 22233444578999999974
No 37
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.80 E-value=1.3e-19 Score=133.39 Aligned_cols=97 Identities=13% Similarity=0.233 Sum_probs=75.9
Q ss_pred CccccccHHHHHHHHHHHHhccc-CCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCC------Cccc
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQT-ASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQE------EKIT 72 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~-~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~------~~g~ 72 (103)
||||||||||++||+++++.+.. .. +++|+||+|+. +|++|.++|++|+.+ ++|+++++++++.. .+|+
T Consensus 279 lIAgGtGIaP~~sml~~~l~~~~~~~--~v~L~~g~r~~-~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~ 355 (409)
T PRK05464 279 FIGGGAGMAPMRSHIFDQLKRLKSKR--KISFWYGARSL-REMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGF 355 (409)
T ss_pred EEEeccChhHHHHHHHHHHhCCCCCc--eEEEEEecCCH-HHhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCccce
Confidence 69999999999999998876533 33 49999999999 799999999999877 89999888886432 5688
Q ss_pred hhHHHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 73 NNLSFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 73 v~~~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+++.+.+.. +.......++++|+||+|.
T Consensus 356 v~~~l~~~~--l~~~~~~~~~~vyiCGP~~ 383 (409)
T PRK05464 356 IHNVLYENY--LKDHEAPEDCEYYMCGPPM 383 (409)
T ss_pred eCHHHHHhh--hhhcCCCCCeEEEEECCHH
Confidence 888776432 2222234578999999874
No 38
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.80 E-value=1e-19 Score=133.75 Aligned_cols=97 Identities=14% Similarity=0.249 Sum_probs=75.6
Q ss_pred CccccccHHHHHHHHHHHHhccc-CCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCC------Cccc
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQT-ASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQE------EKIT 72 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~-~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~------~~g~ 72 (103)
|||||||||||+||+++.+.+.. .. +++|+||+|+. +|++|.++|++|+++ ++++++++++++.. .+|+
T Consensus 275 lIAgGtGIaP~lsmi~~~l~~~~~~~--~v~l~~g~R~~-~dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~ 351 (405)
T TIGR01941 275 FIGGGAGMAPMRSHIFDQLKRLKSKR--KISFWYGARSL-REMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGF 351 (405)
T ss_pred EEecCcCcchHHHHHHHHHhcCCCCC--eEEEEEecCCH-HHHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCccce
Confidence 69999999999999998776432 33 49999999999 899999999999877 89999888886432 4678
Q ss_pred hhHHHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 73 NNLSFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 73 v~~~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+++.+.+. .+.....+.++++|+||+|.
T Consensus 352 v~~~l~~~--~l~~~~~~~~~~vylCGP~~ 379 (405)
T TIGR01941 352 IHNVLYEN--YLKDHDAPEDCEFYMCGPPM 379 (405)
T ss_pred eCHHHHHh--hhcccCCCCCeEEEEeCCHH
Confidence 88877542 12222334678999999974
No 39
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.80 E-value=2.5e-19 Score=124.43 Aligned_cols=93 Identities=24% Similarity=0.350 Sum_probs=74.6
Q ss_pred CccccccHHHHHHHHHHHHhccc-CCCceEEEEEeeccCCCccccHHHHHHHHhCCCeEEEEEEeCCCC----CccchhH
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQT-ASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLYTAFSRDQE----EKITNNL 75 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~-~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~s~~~~----~~g~v~~ 75 (103)
||||||||||+++|+++++++.. .++ ++|+|++|+. +|++|.++|++|.+++++++.++++++.+ ..|++++
T Consensus 103 ~IA~G~GitP~ls~l~~~~~~~~~~~~--i~Li~~~r~~-~~~~~~~~L~~l~~~~~~~~~~~~s~~~~~~~~~~g~v~~ 179 (253)
T cd06221 103 LVAGGLGLAPLRSLINYILDNREDYGK--VTLLYGARTP-EDLLFKEELKEWAKRSDVEVILTVDRAEEGWTGNVGLVTD 179 (253)
T ss_pred EEccccchhHHHHHHHHHHhccccCCc--EEEEEecCCh-HHcchHHHHHHHHhcCCeEEEEEeCCCCCCccCCccccch
Confidence 69999999999999999987642 344 9999999999 79999999999998788998888887553 4577776
Q ss_pred HHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 76 SFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 76 ~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
.+.+.. ....+.++|+||+|+
T Consensus 180 ~l~~~~------~~~~~~~vyicGp~~ 200 (253)
T cd06221 180 LLPELT------LDPDNTVAIVCGPPI 200 (253)
T ss_pred hHHhcC------CCcCCcEEEEECCHH
Confidence 655421 223578999999974
No 40
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.80 E-value=2.8e-19 Score=121.99 Aligned_cols=91 Identities=20% Similarity=0.289 Sum_probs=73.6
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC--CCeEEEEEEeCCCC------Cccc
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA--NQLTLYTAFSRDQE------EKIT 72 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~--~~~~~~~~~s~~~~------~~g~ 72 (103)
||||||||||+++|+++++.++...+ ++++|++|+. +|+++.++|++++++ ++++++.++|++++ ..|+
T Consensus 105 liagG~GiaP~~~~~~~~~~~~~~~~--i~l~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~g~~g~ 181 (227)
T cd06213 105 CIAGGSGLAPILAILEQARAAGTKRD--VTLLFGARTQ-RDLYALDEIAAIAARWRGRFRFIPVLSEEPADSSWKGARGL 181 (227)
T ss_pred EEecccchhHHHHHHHHHHhcCCCCc--EEEEEeeCCH-HHhccHHHHHHHHHhccCCeEEEEEecCCCCCCCccCCccc
Confidence 69999999999999999987665444 9999999999 799999999999864 78998888887532 3467
Q ss_pred hhHHHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 73 NNLSFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 73 v~~~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+++.+.+. + ..+..+|+||+|.
T Consensus 182 v~~~l~~~-------~-~~~~~v~~CGp~~ 203 (227)
T cd06213 182 VTEHIAEV-------L-LAATEAYLCGPPA 203 (227)
T ss_pred HHHHHHhh-------c-cCCCEEEEECCHH
Confidence 77765532 1 3578999999874
No 41
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.79 E-value=1.7e-19 Score=129.48 Aligned_cols=96 Identities=17% Similarity=0.237 Sum_probs=71.8
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCCCccchhHHHhh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQEEKITNNLSFES 79 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~~~g~v~~~l~~ 79 (103)
||||||||||++||+++++.++...+ ++|+||+|+. +|++|.+||++|+++ +++++++..+++. .+++.++++.+
T Consensus 116 liAgG~GItP~~sml~~~~~~~~~~~--v~l~y~~r~~-~~~~~~~el~~l~~~~~~~~~~~~~~~~~-~~~~~~grl~~ 191 (332)
T PRK10684 116 LLAAGCGVTPIMSMRRWLLKNRPQAD--VQVIFNVRTP-QDVIFADEWRQLKQRYPQLNLTLVAENNA-TEGFIAGRLTR 191 (332)
T ss_pred EEecCcCcchHHHHHHHHHhcCCCCC--EEEEEeCCCh-HHhhhHHHHHHHHHHCCCeEEEEEeccCC-CCCccccccCH
Confidence 69999999999999999887654454 9999999999 899999999999987 8888877776543 24444444432
Q ss_pred cHHhhcccc-CCCCcEEEEeecCC
Q psy12843 80 RVEAKIPYL-GWDSTYIILIIRPE 102 (103)
Q Consensus 80 ~~~~l~~~l-~~~~~~~yvcg~p~ 102 (103)
. .+...+ +..++++|+||+|.
T Consensus 192 ~--~l~~~~~~~~~~~vyiCGP~~ 213 (332)
T PRK10684 192 E--LLQQAVPDLASRTVMTCGPAP 213 (332)
T ss_pred H--HHHHhcccccCCEEEEECCHH
Confidence 1 122222 22468999999874
No 42
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.79 E-value=2.9e-19 Score=128.35 Aligned_cols=97 Identities=15% Similarity=0.253 Sum_probs=71.2
Q ss_pred CccccccHHHHHHHHHHHHhccc-----CCCceEEEEEeeccCCCccccHHHHHHHHhC-C-CeEEEEEEeCCCC-----
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQT-----ASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-N-QLTLYTAFSRDQE----- 68 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~-----~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~-~~~~~~~~s~~~~----- 68 (103)
|||||||||||+||++++++++. .+. +++|+||+|+. +|++|.++|++|+++ + +|+++.+++++.+
T Consensus 164 lIAGGsGITP~lsmlr~~l~~~~~~~~~~~~-~v~Llyg~R~~-~di~~~~eL~~La~~~~~~f~v~~~ls~~~~~~~w~ 241 (325)
T PTZ00274 164 MIAGGTGFTPMLQIIRHSLTEPWDSGEVDRT-KLSFLFCNRTE-RHILLKGLFDDLARRYSNRFKVYYTIDQAVEPDKWN 241 (325)
T ss_pred EEeCCcchhHHHHHHHHHHhcccccccCCCC-eEEEEEEcCCH-HHhhHHHHHHHHHHhCCCcEEEEEEeCCCCcccCCC
Confidence 69999999999999999887542 111 49999999999 899999999999876 5 6999899986421
Q ss_pred -CccchhHHHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 69 -EKITNNLSFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 69 -~~g~v~~~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
..|+|++.+... +..-....+..+|+||+|.
T Consensus 242 g~~G~V~~~ll~~---~~~~~~~~~~~vylCGPp~ 273 (325)
T PTZ00274 242 HFLGYVTKEMVRR---TMPAPEEKKKIIMLCGPDQ 273 (325)
T ss_pred CCCCccCHHHHHH---hcCCCccCCcEEEEeCCHH
Confidence 457777654211 1110111346899999974
No 43
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.79 E-value=2.7e-19 Score=122.24 Aligned_cols=93 Identities=22% Similarity=0.367 Sum_probs=72.0
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCC------Cccch
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQE------EKITN 73 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~------~~g~v 73 (103)
||||||||||++||+++++......+ ++|+|++|+. +|++|.+||++|+++ ++++++.+++++.+ .++++
T Consensus 107 liagG~Gitp~~s~~~~~~~~~~~~~--v~l~~~~r~~-~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 183 (231)
T cd06191 107 LVAAGSGITPLMAMIRATLQTAPESD--FTLIHSARTP-ADMIFAQELRELADKPQRLRLLCIFTRETLDSDLLHGRIDG 183 (231)
T ss_pred EEecCccHhHHHHHHHHHHhcCCCCC--EEEEEecCCH-HHHhHHHHHHHHHHhCCCeEEEEEECCCCCCccccCCcccc
Confidence 68999999999999999987654444 9999999999 899999999999886 89999999987642 23444
Q ss_pred hHHHhhcHHhhcccc-CCCCcEEEEeecCC
Q psy12843 74 NLSFESRVEAKIPYL-GWDSTYIILIIRPE 102 (103)
Q Consensus 74 ~~~l~~~~~~l~~~l-~~~~~~~yvcg~p~ 102 (103)
.+.+.+ .++ ...++++|+||+|.
T Consensus 184 ~~~l~~------~~~~~~~~~~vyicGp~~ 207 (231)
T cd06191 184 EQSLGA------ALIPDRLEREAFICGPAG 207 (231)
T ss_pred cHHHHH------HhCccccCCeEEEECCHH
Confidence 433322 112 22467999999874
No 44
>PRK05713 hypothetical protein; Provisional
Probab=99.78 E-value=4.6e-19 Score=126.40 Aligned_cols=87 Identities=17% Similarity=0.249 Sum_probs=68.4
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCCCccchhHHHhh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQEEKITNNLSFES 79 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~~~g~v~~~l~~ 79 (103)
|||||||||||+||++++++++..++ ++|+||+|+. +|++|.++|++|+++ ++|++++++++ .+++.+.+
T Consensus 197 lIAgGtGiaP~~s~l~~~~~~~~~~~--v~l~~g~r~~-~d~~~~~el~~l~~~~~~~~~~~~~~~------~~~~~l~~ 267 (312)
T PRK05713 197 LLAAGTGLAPLWGILREALRQGHQGP--IRLLHLARDS-AGHYLAEPLAALAGRHPQLSVELVTAA------QLPAALAE 267 (312)
T ss_pred EEecCcChhHHHHHHHHHHhcCCCCc--EEEEEEcCch-HHhhhHHHHHHHHHHCCCcEEEEEECc------chhhhhhh
Confidence 69999999999999999987765555 9999999999 899999999999876 88998877753 24444332
Q ss_pred cHHhhccccCCCCcEEEEeecCC
Q psy12843 80 RVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 80 ~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+. ....++++|+||+|.
T Consensus 268 ----~~--~~~~~~~vyiCGp~~ 284 (312)
T PRK05713 268 ----LR--LVSRQTMALLCGSPA 284 (312)
T ss_pred ----cc--CCCCCeEEEEeCCHH
Confidence 11 122457899999984
No 45
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.78 E-value=2.7e-19 Score=121.24 Aligned_cols=93 Identities=12% Similarity=0.193 Sum_probs=68.3
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhCCCeEEEEEEeCCCCCccchhHHHhhc
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLYTAFSRDQEEKITNNLSFESR 80 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~s~~~~~~g~v~~~l~~~ 80 (103)
||||||||||++||+++++..+...+ ++|+||+|+. +|++|.+||++|. ++++..++|++.. .++.++.+.+
T Consensus 104 lia~GtGiaP~~s~l~~~~~~~~~~~--v~l~~~~r~~-~~~~~~~el~~l~---~~~~~~~~s~~~~-~~~~~g~~~~- 175 (218)
T cd06196 104 FIAGGAGITPFIAILRDLAAKGKLEG--NTLIFANKTE-KDIILKDELEKML---GLKFINVVTDEKD-PGYAHGRIDK- 175 (218)
T ss_pred EEecCCCcChHHHHHHHHHhCCCCce--EEEEEecCCH-HHHhhHHHHHHhh---cceEEEEEcCCCC-CCeeeeEECH-
Confidence 68999999999999999987554444 9999999999 7999999999984 4677778887653 2333333321
Q ss_pred HHhhccccCCCCcEEEEeecCC
Q psy12843 81 VEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 81 ~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+.+..++...+..+|+||+|.
T Consensus 176 -~~l~~~~~~~~~~vyiCGp~~ 196 (218)
T cd06196 176 -AFLKQHVTDFNQHFYVCGPPP 196 (218)
T ss_pred -HHHHHhcCCCCCEEEEECCHH
Confidence 122333444457899999974
No 46
>KOG0534|consensus
Probab=99.78 E-value=1.6e-18 Score=122.15 Aligned_cols=94 Identities=15% Similarity=0.300 Sum_probs=76.4
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-C-CeEEEEEEeCCCC----Cccchh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-N-QLTLYTAFSRDQE----EKITNN 74 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~-~~~~~~~~s~~~~----~~g~v~ 74 (103)
|||||||||||+.++++++....... +++|+|++++. +|+++++||++++++ + +|+++.++++++. .+|||+
T Consensus 161 miAgGtGItPmlqii~~il~~~~d~t-ki~lly~N~te-~DILlr~eL~~la~~~p~rf~~~y~v~~~~~~w~~~~g~It 238 (286)
T KOG0534|consen 161 MIAGGTGITPMLQLIRAILKDPEDTT-KISLLYANKTE-DDILLREELEELASKYPERFKVWYVVDQPPEIWDGSVGFIT 238 (286)
T ss_pred EEecccchhhHHHHHHHHhcCCCCCc-EEEEEEecCCc-cccchHHHHHHHHhhCcceEEEEEEEcCCcccccCccCccC
Confidence 79999999999999999998765322 59999999999 799999999999988 6 8999999999873 678887
Q ss_pred HHHhhcHHhhcccc-CC-C-CcEEEEeecCC
Q psy12843 75 LSFESRVEAKIPYL-GW-D-STYIILIIRPE 102 (103)
Q Consensus 75 ~~l~~~~~~l~~~l-~~-~-~~~~yvcg~p~ 102 (103)
.-+-. +.+ .. + ++.++|||+|.
T Consensus 239 ~~~i~------~~l~~~~~~~~~~liCGPp~ 263 (286)
T KOG0534|consen 239 KDLIK------EHLPPPKEGETLVLICGPPP 263 (286)
T ss_pred HHHHH------hhCCCCCCCCeEEEEECCHH
Confidence 54332 222 22 3 58999999983
No 47
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.78 E-value=8.7e-19 Score=124.60 Aligned_cols=100 Identities=16% Similarity=0.276 Sum_probs=73.1
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhCCCeEEEEEEeCCCC-----CccchhH
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLYTAFSRDQE-----EKITNNL 75 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~s~~~~-----~~g~v~~ 75 (103)
|||||||||||++|+++++.+..... +++|+||+|+. +|++|.++|+++++.++++++.++++++. ..|+|++
T Consensus 171 lIAgGtGIaP~~sml~~l~~~~~~~~-~i~liyg~r~~-~dl~~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~ 248 (300)
T PTZ00319 171 MIAGGTGITPMLQIIHAIKKNKEDRT-KVFLVYANQTE-DDILLRKELDEAAKDPRFHVWYTLDREATPEWKYGTGYVDE 248 (300)
T ss_pred EEecCcccCHHHHHHHHHHhCCCCCc-eEEEEEecCCH-HHhhHHHHHHHHhhCCCEEEEEEECCCCCCCcccccceeCH
Confidence 68999999999999999987543221 39999999999 89999999999765688999899887432 4678876
Q ss_pred HHhhcH-Hhhc-cccCCCCcEEEEeecCC
Q psy12843 76 SFESRV-EAKI-PYLGWDSTYIILIIRPE 102 (103)
Q Consensus 76 ~l~~~~-~~l~-~~l~~~~~~~yvcg~p~ 102 (103)
.+.+.. .... .-++..++.+|+||+|.
T Consensus 249 ~~l~~~~~~~~~~~~~~~~~~vyiCGp~~ 277 (300)
T PTZ00319 249 EMLRAHLPVPDPQNSGIKKVMALMCGPPP 277 (300)
T ss_pred HHHHhhcCCccccccccCCeEEEEECCHH
Confidence 543321 1000 00122457999999984
No 48
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.77 E-value=2e-18 Score=118.94 Aligned_cols=93 Identities=17% Similarity=0.195 Sum_probs=73.2
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCCC--------cc
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQEE--------KI 71 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~~--------~g 71 (103)
||||||||||++++++++..+...++ ++|+|++|+. ++++|.++|++|+++ ++++++.++|++... .|
T Consensus 118 liagGtGiaP~~~~l~~~~~~~~~~~--i~l~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g 194 (247)
T cd06184 118 LISAGVGITPMLSMLEALAAEGPGRP--VTFIHAARNS-AVHAFRDELEELAARLPNLKLHVFYSEPEAGDREEDYDHAG 194 (247)
T ss_pred EEeccccHhHHHHHHHHHHhcCCCCc--EEEEEEcCch-hhHHHHHHHHHHHhhCCCeEEEEEECCCCcccccccccccC
Confidence 68999999999999999987644454 9999999999 799999999999887 899999999886432 35
Q ss_pred chhHHHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 72 TNNLSFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 72 ~v~~~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+++..+ +...+...+..+|+||+|.
T Consensus 195 ~~~~~~------l~~~~~~~~~~v~icGp~~ 219 (247)
T cd06184 195 RIDLAL------LRELLLPADADFYLCGPVP 219 (247)
T ss_pred ccCHHH------HhhccCCCCCEEEEECCHH
Confidence 554322 2222345688999999874
No 49
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.76 E-value=2.5e-18 Score=117.24 Aligned_cols=93 Identities=13% Similarity=0.206 Sum_probs=71.9
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCC-----Cccchh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQE-----EKITNN 74 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~-----~~g~v~ 74 (103)
||||||||||+++|+++++..+...+ ++++|++|+. +|++|.++|++|+++ ++++++++++++++ ..|+++
T Consensus 108 lIagG~Giap~~~~l~~~~~~~~~~~--v~l~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 184 (231)
T cd06215 108 LLSAGSGITPMMSMARWLLDTRPDAD--IVFIHSARSP-ADIIFADELEELARRHPNFRLHLILEQPAPGAWGGYRGRLN 184 (231)
T ss_pred EEecCcCcchHHHHHHHHHhcCCCCc--EEEEEecCCh-hhhhHHHHHHHHHHHCCCeEEEEEEccCCCCcccccCCcCC
Confidence 69999999999999999987655444 9999999999 899999999999987 88998888887543 245655
Q ss_pred HHHhhcHHhhcccc-CCCCcEEEEeecCC
Q psy12843 75 LSFESRVEAKIPYL-GWDSTYIILIIRPE 102 (103)
Q Consensus 75 ~~l~~~~~~l~~~l-~~~~~~~yvcg~p~ 102 (103)
..+. ...+ +..+.++|+||+|.
T Consensus 185 ~~~l------~~~~~~~~~~~v~icGp~~ 207 (231)
T cd06215 185 AELL------ALLVPDLKERTVFVCGPAG 207 (231)
T ss_pred HHHH------HHhcCCccCCeEEEECCHH
Confidence 4222 1222 22457899999874
No 50
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.76 E-value=3.6e-18 Score=115.99 Aligned_cols=93 Identities=16% Similarity=0.253 Sum_probs=70.3
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCCCcc--chhHHH
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQEEKI--TNNLSF 77 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~~~g--~v~~~l 77 (103)
||||||||||+++++++++.+...++ ++|+|++|+. ++++|.+||++|+++ ++++++.++++++...+ ++.+ +
T Consensus 102 ~iagG~Giap~~~~l~~~~~~~~~~~--v~l~~~~r~~-~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 177 (222)
T cd06194 102 LVGAGTGLAPLWGIARAALRQGHQGE--IRLVHGARDP-DDLYLHPALLWLAREHPNFRYIPCVSEGSQGDPRVRAGR-I 177 (222)
T ss_pred EEecCcchhhHHHHHHHHHhcCCCcc--EEEEEecCCh-hhccCHHHHHHHHHHCCCeEEEEEEccCCCCCcccccch-h
Confidence 68999999999999999987655554 9999999999 799999999999985 88998888888654221 1222 2
Q ss_pred hhcHHhhccccCCCCcEEEEeecCC
Q psy12843 78 ESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
.+ .+. ....+..+|+||+|.
T Consensus 178 ~~---~~~--~~~~~~~vyicGp~~ 197 (222)
T cd06194 178 AA---HLP--PLTRDDVVYLCGAPS 197 (222)
T ss_pred hh---hhc--cccCCCEEEEeCCHH
Confidence 11 111 123578999999874
No 51
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.76 E-value=2.1e-18 Score=120.58 Aligned_cols=93 Identities=19% Similarity=0.282 Sum_probs=68.1
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhCCCeEEEEEEeCCCC----CccchhHH
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLYTAFSRDQE----EKITNNLS 76 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~s~~~~----~~g~v~~~ 76 (103)
||||||||||++||+++++.+..... +++|+||+|+. +|++|.+||++|+++.+ +.+++++++. ..|++++.
T Consensus 106 lIAgGtGItP~~sil~~~~~~~~~~~-~v~L~~g~r~~-~~l~~~~el~~~~~~~~--~~~~~~~~~~~~~~~~G~v~~~ 181 (263)
T PRK08221 106 VVAGGTGVAPVKGLMRYFYENPQEIK-SLDLILGFKNP-DDILFKEDLKRWREKIN--LILTLDEGEEGYRGNVGLVTKY 181 (263)
T ss_pred EEcccccHHHHHHHHHHHHhCcccCc-eEEEEEecCCH-HHhhHHHHHHHHhhcCc--EEEEecCCCCCCccCccccChh
Confidence 69999999999999999876543211 39999999999 89999999999987533 4455555432 45777765
Q ss_pred HhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 77 FESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 77 l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+.+. .+....+.++|+||+|+
T Consensus 182 l~~~-----~~~~~~~~~vylCGp~~ 202 (263)
T PRK08221 182 IPEL-----TLKDIDNMQVIVVGPPI 202 (263)
T ss_pred hHhc-----cCCCcCCeEEEEECCHH
Confidence 4431 01123578999999985
No 52
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.75 E-value=2.9e-18 Score=117.14 Aligned_cols=94 Identities=17% Similarity=0.238 Sum_probs=73.1
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCC-----Cccchh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQE-----EKITNN 74 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~-----~~g~v~ 74 (103)
||||||||||+++++++++......+ ++++|++|+. +|++|.++|++++++ ++++++.+++++.. .+|+++
T Consensus 112 liagG~Giap~~~~~~~~~~~~~~~~--i~l~~~~r~~-~~~~~~~el~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~ 188 (235)
T cd06217 112 LLAGGSGIVPLMSMIRYRRDLGWPVP--FRLLYSARTA-EDVIFRDELEQLARRHPNLHVTEALTRAAPADWLGPAGRIT 188 (235)
T ss_pred EEecCcCccHHHHHHHHHHhcCCCce--EEEEEecCCH-HHhhHHHHHHHHHHHCCCeEEEEEeCCCCCCCcCCcCcEeC
Confidence 68999999999999999987655444 9999999999 799999999999886 78998888887621 346665
Q ss_pred HHHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 75 LSFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 75 ~~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+.+.+. + .....++.+|+||+|.
T Consensus 189 ~~~l~~---~--~~~~~~~~v~icGp~~ 211 (235)
T cd06217 189 ADLIAE---L--VPPLAGRRVYVCGPPA 211 (235)
T ss_pred HHHHHh---h--CCCccCCEEEEECCHH
Confidence 543221 1 1223578999999874
No 53
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.75 E-value=3.5e-18 Score=123.35 Aligned_cols=96 Identities=19% Similarity=0.228 Sum_probs=70.7
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-C-CeEEEEEEeCCCC----Cccchh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-N-QLTLYTAFSRDQE----EKITNN 74 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~-~~~~~~~~s~~~~----~~g~v~ 74 (103)
||||||||||++||+++++.++...+ ++|+||+|+. +|++|.+||++|++. + +++++.++|++++ ..|+++
T Consensus 114 liagG~GItP~~s~l~~~~~~~~~~~--v~l~~~~r~~-~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~gr~~ 190 (352)
T TIGR02160 114 AVAAGSGITPMLSIAETVLAAEPRST--FTLVYGNRRT-ASVMFAEELADLKDKHPQRFHLAHVLSREPREAPLLSGRLD 190 (352)
T ss_pred EEeccccHhHHHHHHHHHHhcCCCce--EEEEEEeCCH-HHHHHHHHHHHHHHhCcCcEEEEEEecCCCcCcccccCccC
Confidence 68999999999999999987654444 9999999999 899999999999876 4 5888888887653 234442
Q ss_pred -HHHhhcHHhhccccC-CCCcEEEEeecCC
Q psy12843 75 -LSFESRVEAKIPYLG-WDSTYIILIIRPE 102 (103)
Q Consensus 75 -~~l~~~~~~l~~~l~-~~~~~~yvcg~p~ 102 (103)
+.+.+. +..+.. ..+..+|+||+|.
T Consensus 191 ~~~l~~~---l~~~~~~~~~~~vyiCGp~~ 217 (352)
T TIGR02160 191 GERLAAL---LDSLIDVDRADEWFLCGPQA 217 (352)
T ss_pred HHHHHHH---HHhccCcccCCEEEEECCHH
Confidence 222221 112222 2457899999873
No 54
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.75 E-value=5e-18 Score=116.84 Aligned_cols=92 Identities=17% Similarity=0.272 Sum_probs=71.9
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCCCccchhHHHhh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQEEKITNNLSFES 79 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~~~g~v~~~l~~ 79 (103)
||||||||||++|+++++...+...+ ++++|++|+. +|++|.++|++++++ ++++++++++++ ...|+++....
T Consensus 127 ~iagG~Giap~~s~l~~~~~~~~~~~--i~l~~~~r~~-~~~~~~~el~~l~~~~~~~~~~~~~s~~-~~~g~~~~~~l- 201 (243)
T cd06216 127 LIAAGSGITPVMSMLRTLLARGPTAD--VVLLYYARTR-EDVIFADELRALAAQHPNLRLHLLYTRE-ELDGRLSAAHL- 201 (243)
T ss_pred EEecCccHhHHHHHHHHHHhcCCCCC--EEEEEEcCCh-hhhHHHHHHHHHHHhCCCeEEEEEEcCC-ccCCCCCHHHH-
Confidence 68999999999999999987654444 9999999999 799999999999865 889988888876 34666654322
Q ss_pred cHHhhcccc-CCCCcEEEEeecCC
Q psy12843 80 RVEAKIPYL-GWDSTYIILIIRPE 102 (103)
Q Consensus 80 ~~~~l~~~l-~~~~~~~yvcg~p~ 102 (103)
..+. +..++.+|+||+|.
T Consensus 202 -----~~~~~~~~~~~vyvcGp~~ 220 (243)
T cd06216 202 -----DAVVPDLADRQVYACGPPG 220 (243)
T ss_pred -----HHhccCcccCeEEEECCHH
Confidence 1122 23467999999874
No 55
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.74 E-value=6.6e-18 Score=117.95 Aligned_cols=93 Identities=18% Similarity=0.255 Sum_probs=67.0
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhCCCeEEEEEEeCCCC----CccchhHH
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLYTAFSRDQE----EKITNNLS 76 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~s~~~~----~~g~v~~~ 76 (103)
||||||||||++||+++++.+..... +++|+|++|+. +|++|.+||++|+++.+++ ++++++.+ ..|++++.
T Consensus 104 lIAgGtGIaP~~sil~~l~~~~~~~~-~v~L~~~~r~~-~~~~~~~eL~~l~~~~~~~--~~~~~~~~~~~~~~g~v~~~ 179 (261)
T TIGR02911 104 VVAGGTGVAPVKGVVEYFVKNPKEIK-SLNLILGFKTP-DDILFKEDIAEWKGNINLT--LTLDEAEEDYKGNIGLVTKY 179 (261)
T ss_pred EEecccCcHHHHHHHHHHHhCcccCc-eEEEEEecCCH-HHhhHHHHHHHHHhcCcEE--EEEcCCCCCCcCCeeccCHh
Confidence 69999999999999999876543211 49999999999 8999999999998764444 34443322 45677665
Q ss_pred HhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 77 FESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 77 l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+.+. .+-++.+.++|+||+|.
T Consensus 180 l~~~-----~~~~~~~~~v~lCGp~~ 200 (261)
T TIGR02911 180 IPEL-----TLKDIEEVQAIVVGPPI 200 (261)
T ss_pred HHhc-----cCCCccceEEEEECCHH
Confidence 4431 11123467899999984
No 56
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.73 E-value=1.6e-17 Score=113.26 Aligned_cols=96 Identities=18% Similarity=0.318 Sum_probs=72.5
Q ss_pred CccccccHHHHHHHHHHHHhccc-CCCceEEEEEeeccCCCccccHHHHHHHHhC--CCeEEEEEEeCCCC----Cccch
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQT-ASAQRLHLFFGCRNQGADFYFNQEWQNAIQA--NQLTLYTAFSRDQE----EKITN 73 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~-~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~--~~~~~~~~~s~~~~----~~g~v 73 (103)
||||||||||+++++++++.+.. .. +++|+|++|+. ++++|.++|++|.+. +++++++++++++. ..|++
T Consensus 109 liagGtGiaP~~~~l~~~~~~~~~~~--~i~l~~~~r~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 185 (234)
T cd06183 109 MIAGGTGITPMLQLIRAILKDPEDKT--KISLLYANRTE-EDILLREELDELAKKHPDRFKVHYVLSRPPEGWKGGVGFI 185 (234)
T ss_pred EEcCCcchhHHHHHHHHHHhCcCcCc--EEEEEEecCCH-HHhhhHHHHHHHHHhCcccEEEEEEEcCCCcCCccccceE
Confidence 68999999999999999987542 33 49999999999 799999999999876 68888888887543 35777
Q ss_pred hHHHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 74 NLSFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 74 ~~~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
++.+.+.. .......+..+|+||+|.
T Consensus 186 ~~~~l~~~---~~~~~~~~~~~~icGp~~ 211 (234)
T cd06183 186 TKEMIKEH---LPPPPSEDTLVLVCGPPP 211 (234)
T ss_pred CHHHHHHh---CCCCCCCCeEEEEECCHH
Confidence 75443211 100023578899999873
No 57
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.72 E-value=2.3e-17 Score=113.18 Aligned_cols=97 Identities=21% Similarity=0.244 Sum_probs=71.8
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-C-CeEEEEEEeCCCC----Cccchh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-N-QLTLYTAFSRDQE----EKITNN 74 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~-~~~~~~~~s~~~~----~~g~v~ 74 (103)
||||||||||++++++++......++ ++|+|++|+. +|++|.++|++|++. + ++++..++++++. ..|+++
T Consensus 113 lia~GtGiap~~~~~~~~~~~~~~~~--v~l~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 189 (241)
T cd06214 113 LFAAGSGITPVLSILKTALAREPASR--VTLVYGNRTE-ASVIFREELADLKARYPDRLTVIHVLSREQGDPDLLRGRLD 189 (241)
T ss_pred EEecccChhhHHHHHHHHHhcCCCCc--EEEEEEeCCH-HHhhHHHHHHHHHHhCcCceEEEEEecCCCCCcccccCccC
Confidence 68999999999999999887654444 9999999999 899999999999866 3 7888888887543 245555
Q ss_pred HHHhhcHHhhccc-cCCCCcEEEEeecCC
Q psy12843 75 LSFESRVEAKIPY-LGWDSTYIILIIRPE 102 (103)
Q Consensus 75 ~~l~~~~~~l~~~-l~~~~~~~yvcg~p~ 102 (103)
+.+... .+..+ ....+..+|+||+|+
T Consensus 190 ~~~~~~--~~~~~~~~~~~~~v~icGp~~ 216 (241)
T cd06214 190 AAKLNA--LLKNLLDATEFDEAFLCGPEP 216 (241)
T ss_pred HHHHHH--hhhhhcccccCcEEEEECCHH
Confidence 432211 11122 223568999999984
No 58
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.72 E-value=2.2e-17 Score=111.78 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=67.5
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhCCCeEEEEEEeCCCCCccchhHHHhhc
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLYTAFSRDQEEKITNNLSFESR 80 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~s~~~~~~g~v~~~l~~~ 80 (103)
||||||||||+++|+++++.+...++ ++|+|++|+. +|++|.++|++|.++.+++++++.+++.+ .......+.
T Consensus 100 lia~GtGiap~~~~l~~~~~~~~~~~--v~l~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-- 173 (216)
T cd06198 100 WIAGGIGITPFLALLEALAARGDARP--VTLFYCVRDP-EDAVFLDELRALAAAAGVVLHVIDSPSDG-RLTLEQLVR-- 173 (216)
T ss_pred EEccccCHHHHHHHHHHHHhcCCCce--EEEEEEECCH-HHhhhHHHHHHHHHhcCeEEEEEeCCCCc-ccchhhhhh--
Confidence 69999999999999999987654444 9999999999 79999999999987667777766654432 222222220
Q ss_pred HHhhccccCCCCcEEEEeecCC
Q psy12843 81 VEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 81 ~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
.......+..+|+||+|+
T Consensus 174 ----~~~~~~~~~~vyicGp~~ 191 (216)
T cd06198 174 ----ALVPDLADADVWFCGPPG 191 (216)
T ss_pred ----hcCCCcCCCeEEEECcHH
Confidence 111234578999999874
No 59
>PLN02252 nitrate reductase [NADPH]
Probab=99.69 E-value=5.6e-17 Score=128.42 Aligned_cols=95 Identities=19% Similarity=0.283 Sum_probs=73.4
Q ss_pred CccccccHHHHHHHHHHHHhccc-CCCceEEEEEeeccCCCccccHHHHHHHHhC--CCeEEEEEEeCCC-C----Cccc
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQT-ASAQRLHLFFGCRNQGADFYFNQEWQNAIQA--NQLTLYTAFSRDQ-E----EKIT 72 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~-~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~--~~~~~~~~~s~~~-~----~~g~ 72 (103)
||||||||||+++|+++++.+.. ..+ ++|+||+|+. +|++|.+||++|+++ ++|++++++|++. + .+|+
T Consensus 763 mIAGGsGITPi~silr~ll~~~~d~t~--i~Liyg~Rt~-~Dil~~eEL~~la~~~p~~~~v~~vls~~~~~~w~g~~Gr 839 (888)
T PLN02252 763 MLAGGTGITPMYQVIQAILRDPEDKTE--MSLVYANRTE-DDILLREELDRWAAEHPDRLKVWYVVSQVKREGWKYSVGR 839 (888)
T ss_pred EEecceehhHHHHHHHHHHhccCCCCc--EEEEEEECCH-HHhhHHHHHHHHHHhCCCCEEEEEEecCCCcCCCCCcCCc
Confidence 79999999999999999987533 334 9999999999 899999999999876 5799999999753 1 4688
Q ss_pred hhHHHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 73 NNLSFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 73 v~~~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
|++.+.+.. +. ....++.+|+||+|.
T Consensus 840 V~~~ll~~~--l~--~~~~~~~vyiCGPp~ 865 (888)
T PLN02252 840 VTEAMLREH--LP--EGGDETLALMCGPPP 865 (888)
T ss_pred CCHHHHHHh--cc--cCCCCeEEEEeCCHH
Confidence 876543221 11 112467899999874
No 60
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.69 E-value=7.3e-17 Score=111.70 Aligned_cols=86 Identities=16% Similarity=0.216 Sum_probs=65.0
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhCCCeEEEEEEeCCC--CCccchhHHHh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLYTAFSRDQ--EEKITNNLSFE 78 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~s~~~--~~~g~v~~~l~ 78 (103)
||||||||||++||++++..++ ++ ++|+|++|+. +|++|.++|++|... +.. .+++. +.+||+++.+.
T Consensus 103 lIagGtGIaP~~s~l~~~~~~~--~~--v~l~~~~r~~-~d~~~~~eL~~l~~~----~~~-~~~~~~~~~~g~v~~~l~ 172 (246)
T cd06218 103 LVGGGIGIAPLLFLAKQLAERG--IK--VTVLLGFRSA-DDLFLVEEFEALGAE----VYV-ATDDGSAGTKGFVTDLLK 172 (246)
T ss_pred EEecccCHHHHHHHHHHHHhcC--Cc--eEEEEEccch-hhhhhHHHHHhhCCc----EEE-EcCCCCCCcceehHHHHH
Confidence 6999999999999999987632 34 9999999999 799999999998531 222 22222 25788998776
Q ss_pred hcHHhhccccCCCCcEEEEeecCC
Q psy12843 79 SRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 79 ~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+.... ..+..||+||+|.
T Consensus 173 ~~~~~------~~~~~vyiCGp~~ 190 (246)
T cd06218 173 ELLAE------ARPDVVYACGPEP 190 (246)
T ss_pred HHhhc------cCCCEEEEECCHH
Confidence 54322 2478999999874
No 61
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.67 E-value=1.7e-16 Score=128.69 Aligned_cols=93 Identities=11% Similarity=0.194 Sum_probs=72.7
Q ss_pred CccccccHHHHHHHHHHHHhccc---CCCceEEEEEeeccCCCccccHHHHHHHHhC-C-CeEEEEEEeCCCC----Ccc
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQT---ASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-N-QLTLYTAFSRDQE----EKI 71 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~---~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~-~~~~~~~~s~~~~----~~g 71 (103)
|||||||||||+||+++++.+.. .. +++|+|++|+. +|++|.+||++|+++ + +|+++++++++++ ..|
T Consensus 1036 lIAGGtGItP~~sml~~~l~~~~~~~~~--~i~Llyg~r~~-~dl~~~~eL~~l~~~~~~~f~~~~~ls~~~~~w~~~~G 1112 (1167)
T PTZ00306 1036 LIAGGTGVAPMLQIIRAALKKPYVDSIE--SIRLIYAAEDV-SELTYRELLESYRKENPGKFKCHFVLNNPPEGWTDGVG 1112 (1167)
T ss_pred EEECCccHhHHHHHHHHHHhCcccCCCc--eEEEEEEeCCH-HHhhHHHHHHHHHHHCCCCEEEEEEECCCCcccCCCCC
Confidence 69999999999999999887541 23 49999999999 899999999999876 5 6999999997543 457
Q ss_pred chhHHHhhcHHhhcccc--CCCCcEEEEeecCC
Q psy12843 72 TNNLSFESRVEAKIPYL--GWDSTYIILIIRPE 102 (103)
Q Consensus 72 ~v~~~l~~~~~~l~~~l--~~~~~~~yvcg~p~ 102 (103)
+|++.+.+ +.+ ...++++|+||+|.
T Consensus 1113 ~i~~~~l~------~~l~~~~~~~~vyiCGP~~ 1139 (1167)
T PTZ00306 1113 FVDRALLQ------SALQPPSKDLLVAICGPPV 1139 (1167)
T ss_pred CCCHHHHH------HhcCCCCCCeEEEEeCCHH
Confidence 77764322 112 22467899999984
No 62
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.66 E-value=1.9e-16 Score=111.43 Aligned_cols=96 Identities=14% Similarity=0.233 Sum_probs=80.5
Q ss_pred CccccccHHHHHHHHHHHHhcc-cCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCC------Cccc
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQ-TASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQE------EKIT 72 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~-~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~------~~g~ 72 (103)
||+||.|.||++|-+-..+.+. +.++ +.+.||+|+. .+.+|.+++++++.+ +||+.|+++|++.+ ..|+
T Consensus 280 FigGGAGmapmRSHIfDqL~rlhSkRk--is~WYGARS~-rE~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgF 356 (410)
T COG2871 280 FIGGGAGMAPMRSHIFDQLKRLHSKRK--ISFWYGARSL-REMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGF 356 (410)
T ss_pred EEecCcCcCchHHHHHHHHHhhcccce--eeeeeccchH-HHhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhH
Confidence 5899999999999987766554 3454 9999999999 899999999999988 99999999999764 5677
Q ss_pred hhHHHhhcHHhhccccCCCCcEEEEeecC
Q psy12843 73 NNLSFESRVEAKIPYLGWDSTYIILIIRP 101 (103)
Q Consensus 73 v~~~l~~~~~~l~~~l~~~~~~~yvcg~p 101 (103)
+...+.+. -|..+-.++++.+|+||+|
T Consensus 357 ihnv~~en--~Lk~h~aPEDceyYmCGPp 383 (410)
T COG2871 357 IHNVLYEN--YLKDHEAPEDCEYYMCGPP 383 (410)
T ss_pred HHHHHHhh--hhhcCCCchheeEEeeCcc
Confidence 77777654 3455666789999999998
No 63
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.66 E-value=2.7e-16 Score=108.97 Aligned_cols=87 Identities=22% Similarity=0.287 Sum_probs=63.2
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhCCCeEEEEEEeCCC--CCccchhHHHh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLYTAFSRDQ--EEKITNNLSFE 78 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~s~~~--~~~g~v~~~l~ 78 (103)
||||||||||+++|+++++..+ .+ ++|+|++|+. +|++|.+||++|+++ +..+ +++. ...|++++.+.
T Consensus 102 liagG~GiaP~~~~l~~~~~~~--~~--v~l~~~~r~~-~~~~~~~el~~l~~~----~~~~-~~~~~~~~~g~v~~~l~ 171 (248)
T cd06219 102 FVGGGVGIAPIYPIAKALKEAG--NR--VITIIGARTK-DLVILEDEFRAVSDE----LIIT-TDDGSYGEKGFVTDPLK 171 (248)
T ss_pred EEeCcccHHHHHHHHHHHHHcC--Ce--EEEEEEcCCH-HHhhhHHHHHhhcCe----EEEE-eCCCCCCccccchHHHH
Confidence 6899999999999999987643 33 9999999999 899999999999642 1222 3332 24678877665
Q ss_pred hcHHhhccccCCCCcEEEEeecCC
Q psy12843 79 SRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 79 ~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+.... ......+|+||+|+
T Consensus 172 ~~~~~-----~~~~~~vyiCGP~~ 190 (248)
T cd06219 172 ELIES-----GEKVDLVIAIGPPI 190 (248)
T ss_pred HHHhc-----cCCccEEEEECCHH
Confidence 43211 12346899999984
No 64
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.64 E-value=9.4e-16 Score=106.80 Aligned_cols=89 Identities=17% Similarity=0.239 Sum_probs=70.1
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhCCCeEEEEEEeCCC-CCccch-hHHHh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLYTAFSRDQ-EEKITN-NLSFE 78 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~s~~~-~~~g~v-~~~l~ 78 (103)
+||||||+||++++++++.+++...+ |+++||+|+. .|+++.+||++|..+ +++++++... +.+|+| ++.+.
T Consensus 112 liagGtG~aPl~~i~~~~~~~~~~~~--V~~~~G~~~~-~dl~~~~el~~~~~~---~~~~~~~~~~~G~~G~v~~~~~~ 185 (252)
T COG0543 112 LIAGGTGIAPLYAIAKELKEKGDANK--VTLLYGARTA-KDLLLLDELEELAEK---EVHPVTDDGWKGRKGFVTTDVLK 185 (252)
T ss_pred EEecccCHhHHHHHHHHHHhcCCCce--EEEEEeccCh-hhcccHHHHHHhhcC---cEEEEECCCCCccCcceeHHHHh
Confidence 58999999999999999998664344 9999999999 899999999999865 4556665322 368899 66665
Q ss_pred hcHHhhccccCCCCcEEEEeecCC
Q psy12843 79 SRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 79 ~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+. +..+...+|+||+|.
T Consensus 186 ~~-------~~~~~~~v~~cGp~~ 202 (252)
T COG0543 186 EL-------LDLEVDDVYICGPPA 202 (252)
T ss_pred hh-------ccccCCEEEEECCHH
Confidence 42 222578999999984
No 65
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.62 E-value=2.6e-15 Score=105.38 Aligned_cols=89 Identities=18% Similarity=0.180 Sum_probs=63.3
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeE-EEEEEeCCCCCccchhHHHh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLT-LYTAFSRDQEEKITNNLSFE 78 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~-~~~~~s~~~~~~g~v~~~l~ 78 (103)
|||||+|||||+||++++...+. .+ +.|+|++|+. +++.|.+| +.+..+ ++.. +....++.. ..+++.-
T Consensus 115 lla~G~GITP~lSml~~~~~~~~-~~--v~l~h~~R~~-~~~af~de-~~l~~~~~~~~~~~~~~~~~~-~~g~~~~--- 185 (266)
T COG1018 115 LLAGGIGITPFLSMLRTLLDRGP-AD--VVLVHAARTP-ADLAFRDE-LELAAELPNALLLGLYTERGK-LQGRIDV--- 185 (266)
T ss_pred EEeccccHhHHHHHHHHHHHhCC-CC--EEEEEecCCh-hhcchhhH-HHHHhhCCCCeeEEEEEecCC-ccccccH---
Confidence 68999999999999999988776 55 9999999999 89999999 888877 6644 444443222 2344331
Q ss_pred hcHHhhccccCCCCcEEEEeecC
Q psy12843 79 SRVEAKIPYLGWDSTYIILIIRP 101 (103)
Q Consensus 79 ~~~~~l~~~l~~~~~~~yvcg~p 101 (103)
+.+.....+...++|+||+.
T Consensus 186 ---~~l~~~~~~~~r~~y~CGp~ 205 (266)
T COG1018 186 ---SRLLSAAPDGGREVYLCGPG 205 (266)
T ss_pred ---HHHhccCCCCCCEEEEECCH
Confidence 11222233333899999873
No 66
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.62 E-value=1.2e-15 Score=104.73 Aligned_cols=84 Identities=14% Similarity=0.171 Sum_probs=61.3
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhCCCeEEEEEEeCCC-CCccchhHHHhh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLYTAFSRDQ-EEKITNNLSFES 79 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~s~~~-~~~g~v~~~l~~ 79 (103)
||||||||||+++|+++++.+ ++ ++|+|++|+. +|++|.+||+++ ..+ .++.+... +..|++++.+.+
T Consensus 93 liAgGtGitP~~sil~~~~~~---~~--i~l~~~~r~~-~d~~~~~eL~~~---~~~--~~~~~~~~~~~~g~~~~~l~~ 161 (233)
T cd06220 93 LIGGGIGIAPLAPLAERLKKA---AD--VTVLLGARTK-EELLFLDRLRKS---DEL--IVTTDDGSYGFKGFVTDLLKE 161 (233)
T ss_pred EEecCcChHHHHHHHHHHHhc---CC--EEEEEecCCh-HHChhHHHHhhC---CcE--EEEEeCCCCcccceehHHHhh
Confidence 689999999999999998865 44 9999999999 799999999973 222 22222211 246788776554
Q ss_pred cHHhhccccCCCCcEEEEeecCC
Q psy12843 80 RVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 80 ~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
.. ......+|+||+|+
T Consensus 162 ~~-------~~~~~~vyicGp~~ 177 (233)
T cd06220 162 LD-------LEEYDAIYVCGPEI 177 (233)
T ss_pred hc-------ccCCCEEEEECCHH
Confidence 21 22456899999974
No 67
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.62 E-value=1.7e-15 Score=109.34 Aligned_cols=89 Identities=19% Similarity=0.237 Sum_probs=68.3
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeEEEEEEeCCCCCccchhHHHhh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLTLYTAFSRDQEEKITNNLSFES 79 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~~~~~~s~~~~~~g~v~~~l~~ 79 (103)
.||||+|||||+|+++++..++.+++ |+|+|++|+. ++..|.+||++++++ +++++++.-| + ..||+.....+
T Consensus 320 WIAGGIGITPFis~l~~l~~~~s~~~--V~L~Y~~~n~-e~~~y~~eLr~~~qkl~~~~lHiiDS--s-~~g~l~~e~le 393 (438)
T COG4097 320 WIAGGIGITPFISMLFTLAERKSDPP--VHLFYCSRNW-EEALYAEELRALAQKLPNVVLHIIDS--S-KDGYLDQEDLE 393 (438)
T ss_pred EEecCcCcchHHHHHHhhcccccCCc--eEEEEEecCC-chhHHHHHHHHHHhcCCCeEEEEecC--C-CCCccCHHHhh
Confidence 38999999999999999988666665 9999999999 799999999999996 9988887333 3 35776532221
Q ss_pred cHHhhccccCC-CCcEEEEeecC
Q psy12843 80 RVEAKIPYLGW-DSTYIILIIRP 101 (103)
Q Consensus 80 ~~~~l~~~l~~-~~~~~yvcg~p 101 (103)
...+. .-..||.||++
T Consensus 394 ------r~~~~~~~~sv~fCGP~ 410 (438)
T COG4097 394 ------RYPDRPRTRSVFFCGPI 410 (438)
T ss_pred ------ccccccCcceEEEEcCH
Confidence 11222 23489999986
No 68
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.61 E-value=1.6e-15 Score=106.88 Aligned_cols=87 Identities=20% Similarity=0.193 Sum_probs=62.6
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhCCCeEEEEEEeCCC--CCccchhHHHh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLYTAFSRDQ--EEKITNNLSFE 78 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~s~~~--~~~g~v~~~l~ 78 (103)
|||||+||||++++++++..++ .+ ++++||+|+. +|++|.++|++|+.+ +.+ .+++. +.+|+|++.+.
T Consensus 103 lIaGGiGiaPl~~l~~~l~~~~--~~--v~l~~g~r~~-~d~~~~~el~~~~~~----~~v-~~~d~~~g~~G~v~~~l~ 172 (281)
T PRK06222 103 CVGGGVGIAPVYPIAKALKEAG--NK--VITIIGARNK-DLLILEDEMKAVSDE----LYV-TTDDGSYGRKGFVTDVLK 172 (281)
T ss_pred EEeCcCcHHHHHHHHHHHHHCC--Ce--EEEEEecCCH-HHhhcHHHHHhhCCe----EEE-EcCCCCcCcccchHHHHH
Confidence 6899999999999999987643 34 9999999999 899999999988642 122 23322 25788887665
Q ss_pred hcHHhhccccCCCCcEEEEeecCC
Q psy12843 79 SRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 79 ~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+.... . .....+|+||+|.
T Consensus 173 ~~~~~----~-~~~~~vy~CGP~~ 191 (281)
T PRK06222 173 ELLES----G-KKVDRVVAIGPVI 191 (281)
T ss_pred HHhhc----C-CCCcEEEEECCHH
Confidence 43211 1 1145799999874
No 69
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.59 E-value=2.5e-15 Score=104.14 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=61.9
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhCCCeEEEEEEeCCC--CCccchhHHHh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLYTAFSRDQ--EEKITNNLSFE 78 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~s~~~--~~~g~v~~~l~ 78 (103)
||||||||||++++++++..++ .+ ++++|++|+. +|++|.++|+++.+ + .+. +++. +.+|++++.+.
T Consensus 107 lIagG~GiaP~~s~l~~~~~~~--~~--v~l~~~~r~~-~d~~~~~el~~~~~---~--~~~-~~~~~~~~~g~v~~~l~ 175 (250)
T PRK00054 107 LVGGGIGVAPLYELAKELKKKG--VE--VTTVLGARTK-DEVIFEEEFAKVGD---V--YVT-TDDGSYGFKGFVTDVLD 175 (250)
T ss_pred EEeccccHHHHHHHHHHHHHcC--Cc--EEEEEEcCCH-HHhhhHHHHHhcCC---E--EEE-ecCCCCCcccchhHhHh
Confidence 6899999999999999987643 33 9999999999 79999999998532 2 222 2222 25688888765
Q ss_pred hcHHhhccccCCCCcEEEEeecCC
Q psy12843 79 SRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 79 ~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+.. ....++|+||+|+
T Consensus 176 ~~~--------~~~~~vyvCGp~~ 191 (250)
T PRK00054 176 ELD--------SEYDAIYSCGPEI 191 (250)
T ss_pred hhc--------cCCCEEEEeCCHH
Confidence 431 2356899999874
No 70
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.57 E-value=7.7e-15 Score=98.89 Aligned_cols=84 Identities=15% Similarity=0.227 Sum_probs=61.8
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhCCCeEEEEEEeCCCCCccchhHHHhhc
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLYTAFSRDQEEKITNNLSFESR 80 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~s~~~~~~g~v~~~l~~~ 80 (103)
|||+||||||+++|++++.... .+ ++++|++|+. +|++|.++|+++. ..++++. +++.. ....+++.+..
T Consensus 103 ~ia~GtGiap~~~il~~~~~~~--~~--v~l~~~~r~~-~~~~~~~~l~~~~-~~~~~~~--~~~~~-~~~~~~~~~~~- 172 (211)
T cd06185 103 LIAGGIGITPILSMARALAARG--AD--FELHYAGRSR-EDAAFLDELAALP-GDRVHLH--FDDEG-GRLDLAALLAA- 172 (211)
T ss_pred EEeccchHhHHHHHHHHHHhCC--CC--EEEEEEeCCC-cchhHHHHHhhhc-CCcEEEE--ECCCC-CccCHHHHhcc-
Confidence 6899999999999999987632 34 9999999999 7999999999987 4455543 44433 23445544432
Q ss_pred HHhhccccCCCCcEEEEeecCC
Q psy12843 81 VEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 81 ~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+ .++..+|+||+|.
T Consensus 173 -------~-~~~~~vyicGp~~ 186 (211)
T cd06185 173 -------P-PAGTHVYVCGPEG 186 (211)
T ss_pred -------C-CCCCEEEEECCHH
Confidence 1 1367999999874
No 71
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.56 E-value=8.2e-15 Score=100.04 Aligned_cols=49 Identities=16% Similarity=0.273 Sum_probs=42.5
Q ss_pred CccccccHHHHHHHHHHHHhccc-CCCceEEEEEeeccCCCccccHHHHHHHH
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQT-ASAQRLHLFFGCRNQGADFYFNQEWQNAI 52 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~-~~~~~v~l~~g~r~~~~d~~~~~el~~~~ 52 (103)
||||||||||+++|+++++.+.. .. +++|+|++|+. +|++|.+||+++.
T Consensus 130 lIagG~GItP~~sil~~l~~~~~~~~--~v~l~~~~r~~-~~~~~~~el~~~~ 179 (220)
T cd06197 130 WIAGGVGITPFLAMLRAILSSRNTTW--DITLLWSLRED-DLPLVMDTLVRFP 179 (220)
T ss_pred EEecccchhhHHHHHHHHHhcccCCC--cEEEEEEecch-hhHHHHHHHHhcc
Confidence 69999999999999999886532 23 39999999999 7999999998775
No 72
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.55 E-value=1.1e-14 Score=100.43 Aligned_cols=85 Identities=16% Similarity=0.164 Sum_probs=59.4
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhCCCeEEEEEEeCCCC--CccchhHHHh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLYTAFSRDQE--EKITNNLSFE 78 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~s~~~~--~~g~v~~~l~ 78 (103)
||||||||||+++|++++..++ .+ ++|+|++|+. +|+++.+||+++. .. .+.++++.. ..|++++...
T Consensus 102 liagGtGiap~~~~l~~~~~~~--~~--v~l~~~~r~~-~d~~~~~el~~~~---~~--~~~~~~~~~~~~~g~v~~~~~ 171 (243)
T cd06192 102 LVAGGIGLAPLLPIAKKLAANG--NK--VTVLAGAKKA-KEEFLDEYFELPA---DV--EIWTTDDGELGLEGKVTDSDK 171 (243)
T ss_pred EEeCcccHHHHHHHHHHHHHCC--Ce--EEEEEecCcH-HHHHHHHHHHhhc---Ce--EEEEecCCCCccceeechhhh
Confidence 6999999999999999988652 33 9999999999 7999999999872 12 223333321 4566655311
Q ss_pred hcHHhhccccCCCCcEEEEeecCC
Q psy12843 79 SRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 79 ~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
.+....+..+|+||+|+
T Consensus 172 -------~~~~~~~~~v~icGp~~ 188 (243)
T cd06192 172 -------PIPLEDVDRIIVAGSDI 188 (243)
T ss_pred -------hhhcccCCEEEEECCHH
Confidence 11112356899999874
No 73
>PRK05802 hypothetical protein; Provisional
Probab=99.52 E-value=1.3e-14 Score=104.09 Aligned_cols=84 Identities=13% Similarity=0.047 Sum_probs=59.0
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhCCCeEEEEEEeCCC---CCccchhHHH
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLYTAFSRDQ---EEKITNNLSF 77 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~s~~~---~~~g~v~~~l 77 (103)
+||||+||||++++++++++++ .+ ++++||+|+. +|+++.++|++|..+ ......+++.. ..+++|++.+
T Consensus 177 lIaGGiGIaPl~~l~~~l~~~~--~~--v~li~g~r~~-~~~~~~~el~~~~~~--~~~~~~~ddG~~~~~~~g~v~~~l 249 (320)
T PRK05802 177 VIARGIGQAPGVPVIKKLYSNG--NK--IIVIIDKGPF-KNNFIKEYLELYNIE--IIELNLLDDGELSEEGKDILKEII 249 (320)
T ss_pred EEEeEEeHHHHHHHHHHHHHcC--Cc--EEEEEeCCCH-HHHHHHHHHHHhhCc--eEEEEecccCCCCccccchHHHHh
Confidence 6899999999999999998765 24 9999999999 899999999998643 11111122211 1345666655
Q ss_pred hhcHHhhccccCCCCcEEEEeecC
Q psy12843 78 ESRVEAKIPYLGWDSTYIILIIRP 101 (103)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~yvcg~p 101 (103)
++. +...||+||+|
T Consensus 250 ~~~----------~~~~vy~CGP~ 263 (320)
T PRK05802 250 KKE----------DINLIHCGGSD 263 (320)
T ss_pred cCC----------CCCEEEEECCH
Confidence 421 23568999886
No 74
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.50 E-value=8.1e-14 Score=111.39 Aligned_cols=96 Identities=17% Similarity=0.187 Sum_probs=65.1
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHH---HHHHhC-C-CeEEEEEEeCCC--CCccch
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEW---QNAIQA-N-QLTLYTAFSRDQ--EEKITN 73 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el---~~~~~~-~-~~~~~~~~s~~~--~~~g~v 73 (103)
|||||+||||+++|++++++++ .+ ++++||+|+. +++++.+++ ++|+++ + .++++++ +++. +.+|+|
T Consensus 755 lIAGGiGIAPl~sl~r~l~~~g--~~--V~li~G~Rs~-edl~~~del~~L~~la~~~~~~~~v~~t-tddgs~G~~G~V 828 (944)
T PRK12779 755 FCAGGVGLPPVYPIMRAHLRLG--NH--VTLISGFRAK-EFLFWTGDDERVGKLKAEFGDQLDVIYT-TNDGSFGVKGFV 828 (944)
T ss_pred EEEccEeHHHHHHHHHHHHHCC--CC--EEEEEEeCCH-HHhhhHHHHHHHHHHHHHcCCCeEEEEE-ecCCCCCCcccc
Confidence 6899999999999999987754 34 9999999999 799887764 556654 4 4555444 3332 257899
Q ss_pred hHHHhhcHHhhccccCCCCcEEEEeecCC
Q psy12843 74 NLSFESRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 74 ~~~l~~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
++.+.+........-..+...+|+||+|.
T Consensus 829 t~~l~~ll~~~~~~~~~~~~~Vy~CGP~~ 857 (944)
T PRK12779 829 TGPLEEMLKANQQGKGRTIAEVIAIGPPL 857 (944)
T ss_pred ChHHHHHHHhcccccccCCcEEEEECCHH
Confidence 98776432211100011246799999873
No 75
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.45 E-value=1.6e-13 Score=107.56 Aligned_cols=87 Identities=14% Similarity=0.180 Sum_probs=63.7
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhCCCeEEEEEEeCCC--CCccchhHHHh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLYTAFSRDQ--EEKITNNLSFE 78 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~s~~~--~~~g~v~~~l~ 78 (103)
|||||+||||++++++++++++ .+ ++++||+|+. +|++|.++|++|+.+ + .+ .+++. +.+|+|++.+.
T Consensus 103 lvaGG~GiaPl~~l~~~l~~~~--~~--v~l~~g~r~~-~~l~~~~el~~~~~~--~--~~-~t~dg~~g~~G~v~~~l~ 172 (752)
T PRK12778 103 CAGGGVGVAPMLPIVKALKAAG--NR--VITILGGRSK-ELIILEDEMRESSDE--V--II-MTDDGSYGRKGLVTDGLE 172 (752)
T ss_pred EEECCEeHHHHHHHHHHHHHCC--Ce--EEEEeccCCH-HHhhhHHHHHhhcCe--E--EE-EECCCCCCCcccHHHHHH
Confidence 6899999999999999988754 23 9999999999 899999999998642 2 22 23332 25789988765
Q ss_pred hcHHhhccccCCCCcEEEEeecCC
Q psy12843 79 SRVEAKIPYLGWDSTYIILIIRPE 102 (103)
Q Consensus 79 ~~~~~l~~~l~~~~~~~yvcg~p~ 102 (103)
+.... ..+...+|+||+|.
T Consensus 173 ~~~~~-----~~~~~~vy~CGP~~ 191 (752)
T PRK12778 173 EVIKR-----ETKVDKVFAIGPAI 191 (752)
T ss_pred HHhhc-----CCCCCEEEEECCHH
Confidence 43211 11235799999873
No 76
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.37 E-value=1.3e-12 Score=105.16 Aligned_cols=85 Identities=15% Similarity=0.211 Sum_probs=62.4
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhCCCeEEEEEEeCCC--CCccchhHHHh
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLYTAFSRDQ--EEKITNNLSFE 78 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~s~~~--~~~g~v~~~l~ 78 (103)
|||||+||||+++|++++.+++ .+ ++++||+|+. +++++.+||+.+.. ++ .++ +++. +.+|+|++.+.
T Consensus 104 lVaGGiGIAPl~s~~r~l~~~g--~~--v~li~g~R~~-~~l~~~del~~~~~--~~--~v~-tddgs~G~~G~vt~~l~ 173 (1006)
T PRK12775 104 LVGGGLGVAPVYPQLRAFKEAG--AR--TTGIIGFRNK-DLVFWEDKFGKYCD--DL--IVC-TDDGSYGKPGFVTAALK 173 (1006)
T ss_pred EEEEhHHHHHHHHHHHHHHhCC--Cc--EEEEEeCCCh-HHcccHHHHHhhcC--cE--EEE-ECCCCCCCCCChHHHHH
Confidence 6899999999999999987754 33 9999999999 79999999988753 22 222 3332 25789998776
Q ss_pred hcHHhhccccCCCCcEEEEeecC
Q psy12843 79 SRVEAKIPYLGWDSTYIILIIRP 101 (103)
Q Consensus 79 ~~~~~l~~~l~~~~~~~yvcg~p 101 (103)
+... ..+...+|+||+|
T Consensus 174 ~~l~------~~~~d~vy~CGP~ 190 (1006)
T PRK12775 174 EVCE------KDKPDLVVAIGPL 190 (1006)
T ss_pred HHhc------cCCCCEEEEECCH
Confidence 5321 1223479999986
No 77
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.31 E-value=9.4e-12 Score=97.16 Aligned_cols=97 Identities=15% Similarity=0.207 Sum_probs=69.8
Q ss_pred CccccccHHHHHHHHHHHHhcccC---CCceEEEEEeeccCCCccccHHHHHH-----HHhCCCeEEEEEEeCCCCCccc
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTA---SAQRLHLFFGCRNQGADFYFNQEWQN-----AIQANQLTLYTAFSRDQEEKIT 72 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~---~~~~v~l~~g~r~~~~d~~~~~el~~-----~~~~~~~~~~~~~s~~~~~~g~ 72 (103)
||||||||||++|+++++..+++. .++++.|+|++|+. +|+.+.+++.. +.+..++++++.++|++....+
T Consensus 428 LIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~-~dL~~~del~~~l~~~~~~~~~lkl~iyVTRE~~~~~r 506 (722)
T PLN02844 428 LVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKS-QDICLLNPISSLLLNQSSNQLNLKLKVFVTQEEKPNAT 506 (722)
T ss_pred EEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCH-HHhhhHHHHHHHhHHhHHHhcCceEEEEECCCCCCCCc
Confidence 689999999999999999865321 01149999999999 89999999863 2222577888889998764457
Q ss_pred hhHHHhhc--HHhhccccCCCCcEEEEeec
Q psy12843 73 NNLSFESR--VEAKIPYLGWDSTYIILIIR 100 (103)
Q Consensus 73 v~~~l~~~--~~~l~~~l~~~~~~~yvcg~ 100 (103)
+++.+... .+.+. ++.+..++-+||.
T Consensus 507 l~~~i~~~~~~~~~~--~~~~~~~~~i~G~ 534 (722)
T PLN02844 507 LRELLNQFSQVQTVN--FSTKCSRYAIHGL 534 (722)
T ss_pred hhhHhhccchhhhcC--CCCCCCceEEeCC
Confidence 78877652 22222 5555666777764
No 78
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.30 E-value=5.6e-12 Score=84.86 Aligned_cols=47 Identities=21% Similarity=0.414 Sum_probs=39.9
Q ss_pred CccccccHHHHHHHHHHHHhccc----CCCceEEEEEeeccCCCc-cccHHHHHH
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQT----ASAQRLHLFFGCRNQGAD-FYFNQEWQN 50 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~----~~~~~v~l~~g~r~~~~d-~~~~~el~~ 50 (103)
||||||||||+++++++++.+.. .+ ++.|+|++|+. ++ ..|.++|..
T Consensus 111 liagG~GItp~~s~l~~l~~~~~~~~~~~--~v~l~w~~r~~-~~~~~~~~~l~~ 162 (210)
T cd06186 111 LVAGGSGITFVLPILRDLLRRSSKTSRTR--RVKLVWVVRDR-EDLEWFLDELRA 162 (210)
T ss_pred EEeccccHhhhHHHHHHHHhhhhccCCcc--EEEEEEEECCH-HHhHHHHHHHHh
Confidence 68999999999999999987642 33 49999999999 67 479999975
No 79
>PLN02292 ferric-chelate reductase
Probab=99.25 E-value=2.4e-11 Score=94.67 Aligned_cols=97 Identities=16% Similarity=0.206 Sum_probs=65.3
Q ss_pred CccccccHHHHHHHHHHHHhcccCC---CceEEEEEeeccCCCccccHHHHHH-------HHhCCCeEEEEEEeCCCCCc
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTAS---AQRLHLFFGCRNQGADFYFNQEWQN-------AIQANQLTLYTAFSRDQEEK 70 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~---~~~v~l~~g~r~~~~d~~~~~el~~-------~~~~~~~~~~~~~s~~~~~~ 70 (103)
|||||+||||+++++++++++.... .+++.|+|++|+. +|+++.+++.. ++++.++++.+.++++.+..
T Consensus 436 lIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~-~Dl~~ld~l~~e~~~~~~l~~~~~~~i~iyvTr~~~~~ 514 (702)
T PLN02292 436 MVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNS-SDLSMLDLILPTSGLETELSSFIDIQIKAFVTREKEAG 514 (702)
T ss_pred EEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCH-HHhhHHHHHHHhhhhHHHHhhcCCceEEEEEeCCCCCC
Confidence 6899999999999999998754211 0149999999999 89998876542 33346788888888876421
Q ss_pred c-chhHHHhhcHHhhccc-c---CCCCcEEEEeecCC
Q psy12843 71 I-TNNLSFESRVEAKIPY-L---GWDSTYIILIIRPE 102 (103)
Q Consensus 71 g-~v~~~l~~~~~~l~~~-l---~~~~~~~yvcg~p~ 102 (103)
. +-++ ..+.++.. . ..+++.+.+||+|.
T Consensus 515 ~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~Gp~~ 547 (702)
T PLN02292 515 VKESTG----NMNIIKTLWFKPNLSDQPISPILGPNS 547 (702)
T ss_pred Cccccc----chhhhhhhcCCCCCCCCceEEEeCCCc
Confidence 1 1111 22223222 2 22678999999985
No 80
>PLN02631 ferric-chelate reductase
Probab=99.17 E-value=8.3e-11 Score=91.64 Aligned_cols=67 Identities=22% Similarity=0.300 Sum_probs=54.4
Q ss_pred CccccccHHHHHHHHHHHHhcccC---CCceEEEEEeeccCCCccccHHHHHHH------HhCCCeEEEEEEeCCCC
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTA---SAQRLHLFFGCRNQGADFYFNQEWQNA------IQANQLTLYTAFSRDQE 68 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~---~~~~v~l~~g~r~~~~d~~~~~el~~~------~~~~~~~~~~~~s~~~~ 68 (103)
|||||+||||++|++++++++... +.++++|+|++|+. +|++|.||++.+ .++.++++...+||+++
T Consensus 417 lIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~-~dL~f~deL~~l~~~~~~l~~~ni~i~iyVTR~~~ 492 (699)
T PLN02631 417 LVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHY-HDLAFLDLIFPLDISVSDISRLNLRIEAYITREDK 492 (699)
T ss_pred EEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCH-HHhhhHHHHhhhccchhhhhcCceEEEEEEcCCCC
Confidence 689999999999999999865321 10149999999999 899999999863 22368999999999864
No 81
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.17 E-value=3.3e-11 Score=82.86 Aligned_cols=83 Identities=10% Similarity=0.011 Sum_probs=53.7
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhCCCeEEEEEEeCCCCCccchhHHHhhc
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLYTAFSRDQEEKITNNLSFESR 80 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~s~~~~~~g~v~~~l~~~ 80 (103)
|||+||||||+++|++++... .+ ++++|++|+. +|+++.++ .++++++.+.+++.. .+.... +
T Consensus 125 lia~GtGi~p~~~il~~~~~~---~~--~~~~~~~~~~-~d~~~l~~------~~~~~~~~~~~~~~~-~~~~~~-~--- 187 (235)
T cd06193 125 LAGDETALPAIAAILEELPAD---AR--GTALIEVPDA-ADEQPLPA------PAGVEVTWLHRGGAE-AGELAL-L--- 187 (235)
T ss_pred EEeccchHHHHHHHHHhCCCC---Ce--EEEEEEECCH-HHccccCC------CCCcEEEEEeCCCCC-cchhHH-H---
Confidence 689999999999999987653 33 9999999998 66654332 246776666654442 222111 1
Q ss_pred HHhhccc-cCCCCcEEEEeecCC
Q psy12843 81 VEAKIPY-LGWDSTYIILIIRPE 102 (103)
Q Consensus 81 ~~~l~~~-l~~~~~~~yvcg~p~ 102 (103)
.+... ....+..+|+||+|.
T Consensus 188 --~~~~~~~~~~~~~vyicGp~~ 208 (235)
T cd06193 188 --AVRALAPPAGDGYVWIAGEAG 208 (235)
T ss_pred --HHhcccCCCCCeEEEEEccHH
Confidence 11111 123568999999874
No 82
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=98.95 E-value=1.1e-09 Score=70.61 Aligned_cols=66 Identities=18% Similarity=0.466 Sum_probs=47.1
Q ss_pred CccccccHHHHHHHHHHHHhccc---CCCceEEEEEeeccCCCcc-ccHHHHHHHHhC---CCeEEEEEEeCCC
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQT---ASAQRLHLFFGCRNQGADF-YFNQEWQNAIQA---NQLTLYTAFSRDQ 67 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~---~~~~~v~l~~g~r~~~~d~-~~~~el~~~~~~---~~~~~~~~~s~~~ 67 (103)
|||||+||||+++++++++.... ...++|+|+|.+|+. +++ .+.++|+++... .++++.+.++++.
T Consensus 6 lvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~-~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~ 78 (156)
T PF08030_consen 6 LVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDA-DELEWFSPELNELLELDRLGNVEVHIYVTRES 78 (156)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-T-TTTHHHHHHHHHHHHHHHHTSEEEEEEETT--
T ss_pred EEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCch-hhhhhhhHHHHHHHHHhccccceEEEEEcCCc
Confidence 69999999999999999976543 111259999999999 566 666666665544 3788888887765
No 83
>KOG3378|consensus
Probab=96.77 E-value=0.0003 Score=50.13 Aligned_cols=20 Identities=30% Similarity=0.487 Sum_probs=17.9
Q ss_pred CccccccHHHHHHHHHHHHh
Q psy12843 1 MVGPGTGIAPFRSYIHTRIS 20 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~ 20 (103)
++|||+||||+++|+++.+.
T Consensus 267 ~~a~GiGiTPLi~iiE~~~~ 286 (385)
T KOG3378|consen 267 CFAGGIGITPLIPIIETALL 286 (385)
T ss_pred EecCCcCccccHHHHHHHHh
Confidence 47999999999999998765
No 84
>KOG0039|consensus
Probab=94.32 E-value=0.049 Score=43.03 Aligned_cols=51 Identities=22% Similarity=0.514 Sum_probs=36.1
Q ss_pred CccccccHHHHHHHHHHHHhcccCCC--------------ceEEEEEeeccCCCcc-ccHHHHHHHH
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASA--------------QRLHLFFGCRNQGADF-YFNQEWQNAI 52 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~--------------~~v~l~~g~r~~~~d~-~~~~el~~~~ 52 (103)
||++|.|+||+.|++++++.+...++ .++.+++-+|.. .++ .+.+.+.+..
T Consensus 471 LV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~-~sf~wf~~~l~~v~ 536 (646)
T KOG0039|consen 471 LVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQ-RSFEWFKGLLTEVE 536 (646)
T ss_pred EEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEeccc-cchHHHHHHHHHHH
Confidence 68999999999999999987543211 147778778777 455 5555555554
No 85
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=70.25 E-value=3.3 Score=29.06 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=14.5
Q ss_pred cccccHHHHHHHHHHHH
Q psy12843 3 GPGTGIAPFRSYIHTRI 19 (103)
Q Consensus 3 a~GtGiaP~~s~l~~~~ 19 (103)
++|-|+||+++||+...
T Consensus 209 ~g~gGiaaLltMLqSCs 225 (254)
T COG1691 209 AGGGGIAALLTMLQSCS 225 (254)
T ss_pred cCCccHHHHHHHHHhcC
Confidence 46788999999999864
No 86
>KOG1611|consensus
Probab=67.29 E-value=36 Score=24.03 Aligned_cols=49 Identities=6% Similarity=0.097 Sum_probs=31.3
Q ss_pred HHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC-CCeE-EEEEEeCCC
Q psy12843 12 RSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA-NQLT-LYTAFSRDQ 67 (103)
Q Consensus 12 ~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~-~~~~-~~~~~s~~~ 67 (103)
++++++++.. .+. .+++-++|++ +-- ..|++.|... +++| +.+-++.++
T Consensus 17 lgLVk~llk~--~~i--~~iiat~r~~-e~a--~~~l~~k~~~d~rvHii~Ldvt~de 67 (249)
T KOG1611|consen 17 LGLVKELLKD--KGI--EVIIATARDP-EKA--ATELALKSKSDSRVHIIQLDVTCDE 67 (249)
T ss_pred HHHHHHHhcC--CCc--EEEEEecCCh-HHh--hHHHHHhhccCCceEEEEEecccHH
Confidence 4667777642 232 5667777777 333 7788888766 8999 445555554
No 87
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=61.02 E-value=8.5 Score=32.48 Aligned_cols=17 Identities=12% Similarity=0.044 Sum_probs=12.7
Q ss_pred CccccccHHHHHHHHHHHHh
Q psy12843 1 MVGPGTGIAPFRSYIHTRIS 20 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~ 20 (103)
+||||.|+|| +.+++.+
T Consensus 898 LVgGGVGiAp---Lak~Lk~ 914 (1028)
T PRK06567 898 IVDFEVGNIG---LLKVLKE 914 (1028)
T ss_pred EEEccccHHH---HHHHHHH
Confidence 5899999998 4455544
No 88
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=55.63 E-value=39 Score=21.63 Aligned_cols=61 Identities=5% Similarity=0.096 Sum_probs=33.9
Q ss_pred ccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhC--CCeEEEEEEeC
Q psy12843 4 PGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA--NQLTLYTAFSR 65 (103)
Q Consensus 4 ~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~--~~~~~~~~~s~ 65 (103)
.|+|++-++.+++.+.......+..|.+++..-.+ .-++-...+-+.... .++.+.+.+..
T Consensus 27 nasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE-~gl~GS~~~~~~~~~~~~~~~~~inlD~ 89 (179)
T PF04389_consen 27 NASGVAALLELARVLKELKPQPKRTIRFVFFDGEE-QGLLGSRAFVEHDHEELDNIAAVINLDM 89 (179)
T ss_dssp THHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGG-GTSHHHHHHHHHHHCHHHHEEEEEEECS
T ss_pred chHHHHHHHHHHHHHHHhhcccCccEEEEEecccc-cCccchHHHHHhhhcccccceeEEeccc
Confidence 38999999999999887443322136665555443 344444444432212 34444444443
No 89
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=53.02 E-value=14 Score=19.91 Aligned_cols=13 Identities=8% Similarity=-0.077 Sum_probs=9.9
Q ss_pred CCcEEEEeecCCC
Q psy12843 91 DSTYIILIIRPES 103 (103)
Q Consensus 91 ~~~~~yvcg~p~~ 103 (103)
.+...|||++.|.
T Consensus 46 ~dg~~yVa~g~e~ 58 (60)
T PF03607_consen 46 EDGGSYVASGREP 58 (60)
T ss_dssp -TTEEEEEESSSS
T ss_pred CCCCEEEEEcCCc
Confidence 4778899998763
No 90
>PF06753 Bradykinin: Bradykinin; InterPro: IPR009608 This family consists of several bradykinin sequences. The skins of anuran amphibians, in addition to mucus glands, contain highly specialised poison glands, which, in reaction to stress or attack, exude a complex noxious cocktail of biologically active molecules. These secretions often contain a plethora of peptides among which bradykinin or structural variants have been identified [].; GO: 0005179 hormone activity, 0006950 response to stress, 0005576 extracellular region
Probab=47.53 E-value=3.2 Score=17.16 Aligned_cols=9 Identities=44% Similarity=0.958 Sum_probs=6.5
Q ss_pred ccHHHHHHH
Q psy12843 6 TGIAPFRSY 14 (103)
Q Consensus 6 tGiaP~~s~ 14 (103)
.|++||++-
T Consensus 6 ~gftpfrgk 14 (19)
T PF06753_consen 6 PGFTPFRGK 14 (19)
T ss_pred CCCCccccc
Confidence 578888763
No 91
>PHA00728 hypothetical protein
Probab=46.75 E-value=13 Score=23.50 Aligned_cols=19 Identities=16% Similarity=-0.078 Sum_probs=15.8
Q ss_pred hhccccCCCCcEEEEeecC
Q psy12843 83 AKIPYLGWDSTYIILIIRP 101 (103)
Q Consensus 83 ~l~~~l~~~~~~~yvcg~p 101 (103)
.|.+++.++++++|+.|+-
T Consensus 52 aIsElV~PkDTMfYLsgnq 70 (151)
T PHA00728 52 AISELVEPKDTMFYLSGNQ 70 (151)
T ss_pred HHHHhcCCccceEEecCCc
Confidence 4567788999999999974
No 92
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=44.92 E-value=27 Score=25.45 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=17.9
Q ss_pred Ccccccc--HHHHHHHHHHHHhc
Q psy12843 1 MVGPGTG--IAPFRSYIHTRISN 21 (103)
Q Consensus 1 lIa~GtG--iaP~~s~l~~~~~~ 21 (103)
+.||||| |.|-+++.+++.++
T Consensus 6 ~~~GGTGGHi~Pala~a~~l~~~ 28 (352)
T PRK12446 6 FTGGGSAGHVTPNLAIIPYLKED 28 (352)
T ss_pred EEcCCcHHHHHHHHHHHHHHHhC
Confidence 3589999 99999999998763
No 93
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=44.68 E-value=17 Score=17.86 Aligned_cols=10 Identities=20% Similarity=-0.021 Sum_probs=8.2
Q ss_pred CcEEEEeecC
Q psy12843 92 STYIILIIRP 101 (103)
Q Consensus 92 ~~~~yvcg~p 101 (103)
+..+||+||-
T Consensus 11 ~~~iyv~GG~ 20 (47)
T PF01344_consen 11 GNKIYVIGGY 20 (47)
T ss_dssp TTEEEEEEEB
T ss_pred CCEEEEEeee
Confidence 6789999974
No 94
>COG4078 Predicted membrane protein [Function unknown]
Probab=43.73 E-value=22 Score=23.98 Aligned_cols=21 Identities=29% Similarity=0.320 Sum_probs=16.2
Q ss_pred ccccccHHHHHHHHHHHHhcc
Q psy12843 2 VGPGTGIAPFRSYIHTRISNQ 22 (103)
Q Consensus 2 Ia~GtGiaP~~s~l~~~~~~~ 22 (103)
+.|-||++||.+.=.+..++.
T Consensus 174 v~GEtGvaPFYA~KaemFR~p 194 (221)
T COG4078 174 VIGETGVAPFYAVKAEMFRRP 194 (221)
T ss_pred cccccccchhHHHHHHHhcCC
Confidence 467799999999877776543
No 95
>KOG4723|consensus
Probab=42.80 E-value=1.1e+02 Score=21.41 Aligned_cols=55 Identities=24% Similarity=0.333 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhCCCeEEEEEEeCCC
Q psy12843 11 FRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLYTAFSRDQ 67 (103)
Q Consensus 11 ~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~s~~~ 67 (103)
+-+++..+....+.++ ++|+.++|..+..+++..-|....+.+.-.++++++++=
T Consensus 5 ln~Ll~~~~~~~Eqgk--ltLl~d~~eT~gsFl~H~~l~~~Lkan~~~cFlaf~k~f 59 (248)
T KOG4723|consen 5 LNSLLEHLRPIPEQGK--LTLLLDTRETPGSFLFHYYLYHALKANESTCFLAFSKTF 59 (248)
T ss_pred HHHHHhhcCCCCCCcc--EEEEeecccCCceeeHHHHHHHHHhcCCcEEEEEeecch
Confidence 3456666655555565 999999654337888888887776665445677887764
No 96
>PF08756 YfkB: YfkB-like domain; InterPro: IPR014866 YfkB is adjacent to YfkA in Bacillus subtilis. In other bacterial species, it is fused to this protein. As YfkA contains a Radical SAM domain it suggests this domain is interacts with them.
Probab=41.42 E-value=99 Score=20.14 Aligned_cols=25 Identities=20% Similarity=0.481 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhcccCCCceEEEEEee
Q psy12843 8 IAPFRSYIHTRISNQTASAQRLHLFFGC 35 (103)
Q Consensus 8 iaP~~s~l~~~~~~~~~~~~~v~l~~g~ 35 (103)
+.-++.-+++++.-++.. +|++||.
T Consensus 15 L~e~r~aIh~LLd~Rd~~---~WMLFGT 39 (153)
T PF08756_consen 15 LDEMREAIHRLLDIRDPN---VWMLFGT 39 (153)
T ss_pred HHHHHHHHHHHHhccCCC---eeEEecc
Confidence 455677788888766543 9998885
No 97
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=39.47 E-value=7.2 Score=25.95 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=10.5
Q ss_pred ccccccHHHHHHHHHH
Q psy12843 2 VGPGTGIAPFRSYIHT 17 (103)
Q Consensus 2 Ia~GtGiaP~~s~l~~ 17 (103)
.-||||+||=--..++
T Consensus 73 ttGGTG~t~RDvTpEA 88 (169)
T COG0521 73 TTGGTGITPRDVTPEA 88 (169)
T ss_pred EcCCccCCCCcCCHHH
Confidence 4689999984444443
No 98
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=39.32 E-value=21 Score=20.39 Aligned_cols=12 Identities=8% Similarity=0.041 Sum_probs=10.2
Q ss_pred CCcEEEEeecCC
Q psy12843 91 DSTYIILIIRPE 102 (103)
Q Consensus 91 ~~~~~yvcg~p~ 102 (103)
.+..+|||++.|
T Consensus 65 ~~g~~yVa~g~e 76 (80)
T cd01617 65 EDGGVYVASGRE 76 (80)
T ss_pred cCCCEEEEECCC
Confidence 478999999877
No 99
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=38.02 E-value=38 Score=24.63 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=16.5
Q ss_pred ccccccHHHHHHHHHHHHhc
Q psy12843 2 VGPGTGIAPFRSYIHTRISN 21 (103)
Q Consensus 2 Ia~GtGiaP~~s~l~~~~~~ 21 (103)
.+||||=||+.-.|-..+.+
T Consensus 37 tvGGTGKTP~v~~La~~l~~ 56 (311)
T TIGR00682 37 SVGGTGKTPVVVWLAELLKD 56 (311)
T ss_pred ccCCcChHHHHHHHHHHHHH
Confidence 46999999999998876653
No 100
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=36.14 E-value=18 Score=26.81 Aligned_cols=30 Identities=7% Similarity=-0.108 Sum_probs=25.0
Q ss_pred cchhHHHhhcHHhhccccCCCCcEEEEeec
Q psy12843 71 ITNNLSFESRVEAKIPYLGWDSTYIILIIR 100 (103)
Q Consensus 71 g~v~~~l~~~~~~l~~~l~~~~~~~yvcg~ 100 (103)
.|..+..++....+..++..-+.+++|||+
T Consensus 59 nyf~en~eea~~~i~~mv~~~~pD~viaGP 88 (349)
T PF07355_consen 59 NYFNENKEEALKKILEMVKKLKPDVVIAGP 88 (349)
T ss_pred chhhhCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 477777777777888888888999999996
No 101
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=35.94 E-value=46 Score=24.32 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=17.0
Q ss_pred ccccccHHHHHHHHHHHHhcc
Q psy12843 2 VGPGTGIAPFRSYIHTRISNQ 22 (103)
Q Consensus 2 Ia~GtGiaP~~s~l~~~~~~~ 22 (103)
-+||||=||+...|-..+.+.
T Consensus 44 tvGGTGKTP~v~~L~~~L~~~ 64 (326)
T PF02606_consen 44 TVGGTGKTPLVIWLARLLQAR 64 (326)
T ss_pred ccCCCCchHHHHHHHHHHHhc
Confidence 479999999999887776543
No 102
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=35.63 E-value=53 Score=24.20 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=16.5
Q ss_pred ccccccHHHHHHHHHHHHhc
Q psy12843 2 VGPGTGIAPFRSYIHTRISN 21 (103)
Q Consensus 2 Ia~GtGiaP~~s~l~~~~~~ 21 (103)
-+||||=||+.-.|-..+.+
T Consensus 65 tvGGTGKTP~v~~La~~l~~ 84 (338)
T PRK01906 65 TVGGTGKTPTVIALVDALRA 84 (338)
T ss_pred cCCCCChHHHHHHHHHHHHH
Confidence 47999999999988776643
No 103
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=35.11 E-value=29 Score=25.53 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=16.7
Q ss_pred ccccccHHHHHHHHHHHH
Q psy12843 2 VGPGTGIAPFRSYIHTRI 19 (103)
Q Consensus 2 Ia~GtGiaP~~s~l~~~~ 19 (103)
|+||||+.=+++-++...
T Consensus 13 lgGGtGl~~lL~gLk~~~ 30 (323)
T COG0391 13 LGGGTGLPKLLSGLKRLL 30 (323)
T ss_pred EcCCCCHHHHHHHHHhhc
Confidence 799999999999999887
No 104
>COG5023 Tubulin [Cytoskeleton]
Probab=35.06 E-value=37 Score=25.77 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=12.4
Q ss_pred ccccccHHHHHHHHHHHHhcc
Q psy12843 2 VGPGTGIAPFRSYIHTRISNQ 22 (103)
Q Consensus 2 Ia~GtGiaP~~s~l~~~~~~~ 22 (103)
|||||| +-|-++|-+.+...
T Consensus 139 ~gGGTG-SG~GslLLerl~~e 158 (443)
T COG5023 139 LGGGTG-SGLGSLLLERLREE 158 (443)
T ss_pred ccCcCc-ccHHHHHHHHHHHh
Confidence 577777 34666666666543
No 105
>KOG3507|consensus
Probab=34.66 E-value=27 Score=19.20 Aligned_cols=10 Identities=20% Similarity=0.122 Sum_probs=8.1
Q ss_pred CCcEEEEeec
Q psy12843 91 DSTYIILIIR 100 (103)
Q Consensus 91 ~~~~~yvcg~ 100 (103)
..+.+||||-
T Consensus 16 ~~~miYiCgd 25 (62)
T KOG3507|consen 16 TATMIYICGD 25 (62)
T ss_pred cccEEEEecc
Confidence 4789999983
No 106
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=34.66 E-value=52 Score=17.54 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=14.0
Q ss_pred ccccccHHHHHHHHHHHH
Q psy12843 2 VGPGTGIAPFRSYIHTRI 19 (103)
Q Consensus 2 Ia~GtGiaP~~s~l~~~~ 19 (103)
++.|=|-||+++..-.+.
T Consensus 18 VaPGWGTtplM~~~m~lf 35 (52)
T PF00737_consen 18 VAPGWGTTPLMGVFMALF 35 (52)
T ss_dssp -BSTTTTHHHHHHHHHHH
T ss_pred cCCCccchHHHHHHHHHH
Confidence 578999999999876654
No 107
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=34.46 E-value=21 Score=27.24 Aligned_cols=31 Identities=6% Similarity=-0.077 Sum_probs=25.5
Q ss_pred ccchhHHHhhcHHhhccccCCCCcEEEEeec
Q psy12843 70 KITNNLSFESRVEAKIPYLGWDSTYIILIIR 100 (103)
Q Consensus 70 ~g~v~~~l~~~~~~l~~~l~~~~~~~yvcg~ 100 (103)
.+|..+..++....+..++..-+.++++||+
T Consensus 54 DnYf~en~eea~~~i~~mv~k~~pDv~iaGP 84 (431)
T TIGR01917 54 DSFFGENLEEAKAKVLEMIKGANPDIFIAGP 84 (431)
T ss_pred chhhhhCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3577777777777888888889999999996
No 108
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=34.17 E-value=44 Score=18.53 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=15.2
Q ss_pred ccccccHHHHHHHHHHHHh
Q psy12843 2 VGPGTGIAPFRSYIHTRIS 20 (103)
Q Consensus 2 Ia~GtGiaP~~s~l~~~~~ 20 (103)
+|.|=|-||+++..-.+..
T Consensus 21 VaPGWGTTplMgv~m~Lf~ 39 (64)
T PRK02624 21 VVPGWGTTPVMAVFMVLFL 39 (64)
T ss_pred ccCCccchHHHHHHHHHHH
Confidence 5789999999998776643
No 109
>cd00209 DHFR Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-methylenetetrahydrofolate which is then utilized by thymidylate synthase. Inhibition of DHFR interrupts thymidilate synthesis and DNA replication, inhibitors of DHFR (such as Methotrexate) are used in cancer chemotherapy. 5,6,7,8-tetrahydrofolate also is involved in glycine, serine, and threonine metabolism and aminoacyl-tRNA biosynthesis.
Probab=34.14 E-value=21 Score=22.90 Aligned_cols=13 Identities=23% Similarity=0.049 Sum_probs=10.0
Q ss_pred CCCcEEEEeecCC
Q psy12843 90 WDSTYIILIIRPE 102 (103)
Q Consensus 90 ~~~~~~yvcg~p~ 102 (103)
..+.+|||+|+++
T Consensus 89 ~~~~~I~v~GG~~ 101 (158)
T cd00209 89 NTVEEIFVIGGAE 101 (158)
T ss_pred cCCCeEEEECcHH
Confidence 4566899999863
No 110
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=33.58 E-value=22 Score=27.11 Aligned_cols=31 Identities=13% Similarity=-0.023 Sum_probs=25.5
Q ss_pred ccchhHHHhhcHHhhccccCCCCcEEEEeec
Q psy12843 70 KITNNLSFESRVEAKIPYLGWDSTYIILIIR 100 (103)
Q Consensus 70 ~g~v~~~l~~~~~~l~~~l~~~~~~~yvcg~ 100 (103)
.+|..+..++....+..++..-+.++++||+
T Consensus 54 DnYf~en~eea~~~i~~mv~k~~pDv~iaGP 84 (431)
T TIGR01918 54 DSFFGENLEEAVARVLEMLKDKEPDIFIAGP 84 (431)
T ss_pred chhhhhCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3577777777777888888889999999996
No 111
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=32.53 E-value=27 Score=20.21 Aligned_cols=15 Identities=13% Similarity=-0.013 Sum_probs=9.5
Q ss_pred cCCCCcEEEEeecCC
Q psy12843 88 LGWDSTYIILIIRPE 102 (103)
Q Consensus 88 l~~~~~~~yvcg~p~ 102 (103)
|..++.+.|+||.|.
T Consensus 65 L~~~G~~YFic~~~~ 79 (85)
T PF02298_consen 65 LTKPGPHYFICGVPG 79 (85)
T ss_dssp E-SSEEEEEE--STT
T ss_pred eCCCcCeEEEeCCCC
Confidence 455788999999874
No 112
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=30.97 E-value=28 Score=25.33 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=14.8
Q ss_pred CccccccHHHHHHHHHHH
Q psy12843 1 MVGPGTGIAPFRSYIHTR 18 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~ 18 (103)
+|+||||.+-+..=|+..
T Consensus 3 ~igGGtGl~~ll~gLk~~ 20 (308)
T cd07187 3 AFGGGTGLSTLLRGLKKY 20 (308)
T ss_pred EEeccccHHHHHHHHHhc
Confidence 479999999888888765
No 113
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=30.67 E-value=32 Score=25.05 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=14.5
Q ss_pred CccccccHHHHHHHHHHH
Q psy12843 1 MVGPGTGIAPFRSYIHTR 18 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~ 18 (103)
+|+||||.+-+..=|+..
T Consensus 3 ~igGGtGl~~ll~gLk~~ 20 (309)
T cd07044 3 VFGGGTGLPVLLRGLKEF 20 (309)
T ss_pred EEeccccHHHHHHHHHhc
Confidence 478999999888777755
No 114
>KOG1431|consensus
Probab=29.74 E-value=2e+02 Score=20.73 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=29.8
Q ss_pred CccccccHHHHHHHHHHHH-hcccCCCceEEEEEeeccCCCccccHHHHHHHHhC
Q psy12843 1 MVGPGTGIAPFRSYIHTRI-SNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQA 54 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~-~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~ 54 (103)
||+||+|+.- +-+...+ .++.... -|+|-|.+. .|+--..+-+++-++
T Consensus 5 lVtGg~GLVG--sAi~~vv~~q~~~~e--~wvf~~skd--~DLt~~a~t~~lF~~ 53 (315)
T KOG1431|consen 5 LVTGGTGLVG--SAIVKVVQEQGFDDE--NWVFIGSKD--ADLTNLADTRALFES 53 (315)
T ss_pred EEecCCchHH--HHHHHHHHhcCCCCc--ceEEecccc--ccccchHHHHHHHhc
Confidence 5889999854 3333333 3443333 677777665 478777777776554
No 115
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=29.74 E-value=34 Score=24.99 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=12.6
Q ss_pred ccccccHHHHHHHHHHH
Q psy12843 2 VGPGTGIAPFRSYIHTR 18 (103)
Q Consensus 2 Ia~GtGiaP~~s~l~~~ 18 (103)
|+||||.+-+..=|+..
T Consensus 4 igGGtGl~~ll~gLk~~ 20 (310)
T TIGR01826 4 IGGGTGLSVLLRGLKEL 20 (310)
T ss_pred EeCcchHHHHHHHHHhc
Confidence 67888888877776654
No 116
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=29.58 E-value=66 Score=19.42 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=16.5
Q ss_pred cccccc--HHHHHHHHHHHHhcc
Q psy12843 2 VGPGTG--IAPFRSYIHTRISNQ 22 (103)
Q Consensus 2 Ia~GtG--iaP~~s~l~~~~~~~ 22 (103)
+++||+ +-|+.++.+++.+++
T Consensus 4 ~~~Gt~Ghv~P~lala~~L~~rG 26 (139)
T PF03033_consen 4 ATGGTRGHVYPFLALARALRRRG 26 (139)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTT
T ss_pred EEcCChhHHHHHHHHHHHHhccC
Confidence 345554 889999999998865
No 117
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=29.07 E-value=66 Score=23.81 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=18.2
Q ss_pred cccccc--HHHHHHHHHHHHhccc
Q psy12843 2 VGPGTG--IAPFRSYIHTRISNQT 23 (103)
Q Consensus 2 Ia~GtG--iaP~~s~l~~~~~~~~ 23 (103)
.+|||| +.|-+++.+++.+++.
T Consensus 6 ~~gGTGGHv~pAlAl~~~l~~~g~ 29 (357)
T COG0707 6 TAGGTGGHVFPALALAEELAKRGW 29 (357)
T ss_pred EeCCCccchhHHHHHHHHHHhhCc
Confidence 567777 9999999999988754
No 118
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=28.83 E-value=38 Score=25.03 Aligned_cols=13 Identities=54% Similarity=0.838 Sum_probs=9.0
Q ss_pred cccccHHHHHHHH
Q psy12843 3 GPGTGIAPFRSYI 15 (103)
Q Consensus 3 a~GtGiaP~~s~l 15 (103)
++|||++|+.+-+
T Consensus 114 GTGSG~apvia~~ 126 (349)
T TIGR00065 114 GTGTGAAPVVAKI 126 (349)
T ss_pred ccchhHHHHHHHH
Confidence 4677999966444
No 119
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=28.79 E-value=1e+02 Score=21.95 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=17.5
Q ss_pred cHHhhccccCCCCcEEEEeec
Q psy12843 80 RVEAKIPYLGWDSTYIILIIR 100 (103)
Q Consensus 80 ~~~~l~~~l~~~~~~~yvcg~ 100 (103)
..+++..++..+++.+|||.+
T Consensus 183 ~~~el~~~l~~~n~~~~v~~~ 203 (260)
T COG4742 183 YKEELKEFLKLENTKLYVCDG 203 (260)
T ss_pred HHHHHHHHHhcCCCeEEEecC
Confidence 456677788889999999987
No 120
>KOG1374|consensus
Probab=28.76 E-value=42 Score=25.54 Aligned_cols=41 Identities=17% Similarity=0.369 Sum_probs=22.2
Q ss_pred ccccccHHHHHHHHHHHHhcccCCC-ceEEEEEeeccCCCccc
Q psy12843 2 VGPGTGIAPFRSYIHTRISNQTASA-QRLHLFFGCRNQGADFY 43 (103)
Q Consensus 2 Ia~GtGiaP~~s~l~~~~~~~~~~~-~~v~l~~g~r~~~~d~~ 43 (103)
|||||| +-+=|++-+.+..+-.++ ...+-+|-++....|++
T Consensus 141 iAGGTG-SGlGS~llErL~drypkkliqtysVfPn~d~ssdVV 182 (448)
T KOG1374|consen 141 IAGGTG-SGLGSFLLERLNDRYPKKLVQTYSVFPNQDESSDVV 182 (448)
T ss_pred ecCCCC-cchHHHHHHHHHHhchhhhheeeeeccCCCCccceE
Confidence 688888 456677766665443222 12455666663224554
No 121
>CHL00066 psbH photosystem II protein H
Probab=28.30 E-value=60 Score=18.55 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=15.2
Q ss_pred ccccccHHHHHHHHHHHHh
Q psy12843 2 VGPGTGIAPFRSYIHTRIS 20 (103)
Q Consensus 2 Ia~GtGiaP~~s~l~~~~~ 20 (103)
+|.|-|-||+++..-.+..
T Consensus 33 vapgWGTtp~Mgv~m~lf~ 51 (73)
T CHL00066 33 VAPGWGTTPLMGVAMALFA 51 (73)
T ss_pred ccCCccchHHHHHHHHHHH
Confidence 5789999999998776643
No 122
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=27.72 E-value=44 Score=19.96 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=24.5
Q ss_pred ccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHHHHHhCCCeE
Q psy12843 6 TGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT 58 (103)
Q Consensus 6 tGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~~~~~~~~~~ 58 (103)
|+..|+..++...+.++ ++++-.++....|..+.++|.+++++.+.+
T Consensus 67 t~~~~~~~~~~~~L~~G------~~VVt~nk~ala~~~~~~~L~~~A~~~g~~ 113 (117)
T PF03447_consen 67 TSSEAVAEYYEKALERG------KHVVTANKGALADEALYEELREAARKNGVR 113 (117)
T ss_dssp SSCHHHHHHHHHHHHTT------CEEEES-HHHHHSHHHHHHHHHHHHHHT-E
T ss_pred CCchHHHHHHHHHHHCC------CeEEEECHHHhhhHHHHHHHHHHHHHcCCE
Confidence 34456666666666532 555655554322334556666666654443
No 123
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=27.52 E-value=27 Score=26.16 Aligned_cols=23 Identities=9% Similarity=0.229 Sum_probs=16.5
Q ss_pred ccCCCccccHHHHHHHHhC-CCeEE
Q psy12843 36 RNQGADFYFNQEWQNAIQA-NQLTL 59 (103)
Q Consensus 36 r~~~~d~~~~~el~~~~~~-~~~~~ 59 (103)
|.. .-++|.||+.+.++. .|-++
T Consensus 160 rAe-rGIIyIDEIDKIarkSeN~SI 183 (408)
T COG1219 160 RAE-RGIIYIDEIDKIARKSENPSI 183 (408)
T ss_pred HHh-CCeEEEechhhhhccCCCCCc
Confidence 455 678899999988876 45443
No 124
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=27.45 E-value=2.4e+02 Score=21.47 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=36.3
Q ss_pred EEEEEee-ccCCCccccHHHHHHHHh---C-CCeEEEEEEeCCCCCccchhHHHhhcHHhhccccCCCCcEEEEeecC
Q psy12843 29 LHLFFGC-RNQGADFYFNQEWQNAIQ---A-NQLTLYTAFSRDQEEKITNNLSFESRVEAKIPYLGWDSTYIILIIRP 101 (103)
Q Consensus 29 v~l~~g~-r~~~~d~~~~~el~~~~~---~-~~~~~~~~~s~~~~~~g~v~~~l~~~~~~l~~~l~~~~~~~yvcg~p 101 (103)
|.|+|+| +|+..--+-.++|.++.+ + +.+ +.+.=. ..||-.+ ++++.-.|+.++. .+..++||-+.
T Consensus 174 vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~li---p~~D~A--YQGF~~G-leeDa~~lR~~a~-~~~~~lva~S~ 244 (396)
T COG1448 174 VVLLHGCCHNPTGIDPTEEQWQELADLIKERGLI---PFFDIA--YQGFADG-LEEDAYALRLFAE-VGPELLVASSF 244 (396)
T ss_pred EEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCe---eeeehh--hhhhccc-hHHHHHHHHHHHH-hCCcEEEEehh
Confidence 8888887 455333355667766553 2 322 222111 4677666 7766655555544 34448888654
No 125
>PRK13018 cell division protein FtsZ; Provisional
Probab=27.26 E-value=31 Score=25.88 Aligned_cols=11 Identities=55% Similarity=0.933 Sum_probs=8.0
Q ss_pred cccccHHHHHH
Q psy12843 3 GPGTGIAPFRS 13 (103)
Q Consensus 3 a~GtGiaP~~s 13 (103)
++|||++|+.+
T Consensus 125 GTGSGaapvIa 135 (378)
T PRK13018 125 GTGTGAAPVVA 135 (378)
T ss_pred cchhhHHHHHH
Confidence 46778998764
No 126
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=27.25 E-value=22 Score=24.04 Aligned_cols=9 Identities=44% Similarity=1.136 Sum_probs=4.8
Q ss_pred ccc--ccHHHH
Q psy12843 3 GPG--TGIAPF 11 (103)
Q Consensus 3 a~G--tGiaP~ 11 (103)
+|| ||++|.
T Consensus 134 gGGTGSG~~~~ 144 (216)
T PF00091_consen 134 GGGTGSGLGPV 144 (216)
T ss_dssp SSSHHHHHHHH
T ss_pred cceeccccccc
Confidence 455 555554
No 127
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=27.13 E-value=32 Score=24.78 Aligned_cols=11 Identities=55% Similarity=0.821 Sum_probs=8.1
Q ss_pred cccccHHHHHH
Q psy12843 3 GPGTGIAPFRS 13 (103)
Q Consensus 3 a~GtGiaP~~s 13 (103)
++|||++|+.+
T Consensus 97 GTGSG~ap~ia 107 (303)
T cd02191 97 GTGTGGAPVVA 107 (303)
T ss_pred ccchhHHHHHH
Confidence 46778888775
No 128
>PF10125 NADHdeh_related: NADH dehydrogenase I, subunit N related protein; InterPro: IPR017059 This group contains membrane proteins that are predicted to be transmembrane subunits (EhaH) of multisubunit membrane-bound [NiFe]-hydrogenase Eha complexes. The energy-converting hydrogenase A (eha) operon encodes a putative multisubunit membrane-bound [NiFe]-hydrogenase Eha in Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133). Sequence analysis of the eha operon indicates that it encodes at least 20 proteins, including the [NiFe]-hydrogenase large subunit (IPR014363 from INTERPRO), the [NiFe]-hydrogenase small subunit (PIRSF002913 from PIRSF), and two broadly conserved integral membrane proteins (this entry and PIRSF000215 from PIRSF). These four proteins show high sequence similarity to subunits of the Ech hydrogenase from Methanosarcina barkeri, Escherichia coli hydrogenases 3 and 4 (Hyc and Hyf), and CO-induced hydrogenase from Rhodospirillum rubrum (Coo), all of which form a distinct group of multisubunit membrane-bound [NiFe]-hydrogenases (together called hydrogenase-3-type hydrogenases). In addition to these four subunits, the eha operon encodes a 6[4Fe-4S] polyferredoxin, a 10[4Fe-4S] polyferredoxin, ten other predicted integral membrane proteins (PIRSF005019 from PIRSF, PIRSF019706 from PIRSF, PIRSF036534 from PIRSF, PIRSF006581 from PIRSF, PIRSF036535 from PIRSF, PIRSF019373 from PIRSF, PIRSF019136 from PIRSF, PIRSF036537 from PIRSF, PIRSF036538 from PIRSF, PIRSF004953 from PIRSF), and four hydrophilic subunits (PIRSF005292 from PIRSF, PIRSF019370 from PIRSF, PIRSF006414 from PIRSF, PIRSF000536 from PIRSF) (the latter two hydrophilic subunits are members of well-characterised enzyme families but lack the essential amino acids assumed to form the active site []). All of these proteins are expressed and therefore thought to be functional subunits of the Eha hydrogenase complex []. Note, however, that the ten additional predicted integral membrane proteins are absent from Ech, Coo, Hyc, and Hyf complexes (and therefore from corresponding organisms), indicating that those complexes have a simpler membrane component than Eha []. Members of this group are homologous to the N-terminal domain of PIRSF006542 from PIRSF members (e.g., EhbF, HyfF of E. coli hydrogenase 4, amongst others). Therefore, this type of membrane subunit of Eha complex is conserved across the various hydrogenase-3-type hydrogenases (that is, they are not limited to the Eha subgroup). A protein with sequence similarity to the C-terminal part of EhbF (PIRSF006542 from PIRSF) is not present in the Eha complex (not encoded by the eha operon). Based on sequence similarity and genome context analysis, other organisms such as Methanopyrus kandleri,Methanocaldococcus jannaschii, and M. thermoautotrophicum also encode Eha-like [NiFe]-hydrogenase-3-type complexes and have very similar eha operon structure.
Probab=27.11 E-value=57 Score=22.41 Aligned_cols=20 Identities=30% Similarity=0.311 Sum_probs=14.7
Q ss_pred ccccccHHHHHHHHHHHHhc
Q psy12843 2 VGPGTGIAPFRSYIHTRISN 21 (103)
Q Consensus 2 Ia~GtGiaP~~s~l~~~~~~ 21 (103)
+.|=||+|||.+-=.++.+.
T Consensus 173 v~GEtGvAPFYaaKAEmfRa 192 (219)
T PF10125_consen 173 VIGETGVAPFYAAKAEMFRA 192 (219)
T ss_pred hccccCcchhhhhHHHHhcC
Confidence 35668999999877666554
No 129
>smart00537 DCX Domain in the Doublecortin (DCX) gene product. Tandemly-repeated domain in doublin, the Doublecortin gene product. Proposed to bind tubulin. Doublecortin (DCX) is mutated in human X-linked neuronal migration defects.
Probab=27.09 E-value=29 Score=20.27 Aligned_cols=11 Identities=9% Similarity=-0.155 Sum_probs=9.3
Q ss_pred CcEEEEeecCC
Q psy12843 92 STYIILIIRPE 102 (103)
Q Consensus 92 ~~~~yvcg~p~ 102 (103)
+..+|||++.|
T Consensus 71 ~g~~yVa~g~e 81 (89)
T smart00537 71 DGGSYVASGTE 81 (89)
T ss_pred cCCEEEEEcCC
Confidence 67999999876
No 130
>PRK09330 cell division protein FtsZ; Validated
Probab=26.82 E-value=42 Score=25.25 Aligned_cols=11 Identities=55% Similarity=0.933 Sum_probs=8.1
Q ss_pred cccccHHHHHH
Q psy12843 3 GPGTGIAPFRS 13 (103)
Q Consensus 3 a~GtGiaP~~s 13 (103)
++|||.||+.+
T Consensus 110 GTGTGaapvIA 120 (384)
T PRK09330 110 GTGTGAAPVVA 120 (384)
T ss_pred cccHHHHHHHH
Confidence 46789999654
No 131
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=26.79 E-value=65 Score=24.22 Aligned_cols=37 Identities=14% Similarity=-0.006 Sum_probs=26.7
Q ss_pred cccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCc
Q psy12843 3 GPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGAD 41 (103)
Q Consensus 3 a~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d 41 (103)
+|||=|++.+-++.+++.++-... -|=+|.+..+|.|
T Consensus 266 sGGT~vSSA~~l~~eII~~rYpp~--~wNIY~f~aSDGD 302 (371)
T TIGR02877 266 SGGTYCSSGYKKALEIIDERYNPA--RYNIYAFHFSDGD 302 (371)
T ss_pred CCCeEehHHHHHHHHHHHhhCChh--hCeeEEEEcccCC
Confidence 699999999999999998654332 5666666554344
No 132
>PF13964 Kelch_6: Kelch motif
Probab=26.61 E-value=48 Score=16.54 Aligned_cols=10 Identities=10% Similarity=-0.174 Sum_probs=8.0
Q ss_pred CcEEEEeecC
Q psy12843 92 STYIILIIRP 101 (103)
Q Consensus 92 ~~~~yvcg~p 101 (103)
+.++||.|+-
T Consensus 11 ~~~iyv~GG~ 20 (50)
T PF13964_consen 11 GGKIYVFGGY 20 (50)
T ss_pred CCEEEEECCC
Confidence 5689999874
No 133
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=25.94 E-value=47 Score=23.81 Aligned_cols=11 Identities=55% Similarity=0.921 Sum_probs=7.7
Q ss_pred cccccHHHHHH
Q psy12843 3 GPGTGIAPFRS 13 (103)
Q Consensus 3 a~GtGiaP~~s 13 (103)
++|||++|+.+
T Consensus 97 GTGSG~ap~ia 107 (304)
T cd02201 97 GTGTGAAPVIA 107 (304)
T ss_pred CcchhHHHHHH
Confidence 35678899853
No 134
>PF06453 LT-IIB: Type II heat-labile enterotoxin , B subunit (LT-IIB); InterPro: IPR010503 These are B subunits from the type II heat-labile enterotoxin. The B subunits form a pentameric ring, which interacts with one A subunit. Thus, the structural arrangement of type I and type II heat-labile enterotoxins are very similar [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1TII_F 1QCB_E 1QB5_D.
Probab=25.84 E-value=1.3e+02 Score=18.52 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=26.7
Q ss_pred EEEEEeeccCCCccccHHHHHHHHhC---CCeEEEEEEeCCC
Q psy12843 29 LHLFFGCRNQGADFYFNQEWQNAIQA---NQLTLYTAFSRDQ 67 (103)
Q Consensus 29 v~l~~g~r~~~~d~~~~~el~~~~~~---~~~~~~~~~s~~~ 67 (103)
+|.+=|.+.. .|-++..|+++.+-. .+.++.+|-|...
T Consensus 69 ~w~Ipgg~~Y-PdN~ls~EmRKiAMAAvLS~~rVNlCAs~a~ 109 (122)
T PF06453_consen 69 VWFIPGGQDY-PDNYLSNEMRKIAMAAVLSNVRVNLCASEAS 109 (122)
T ss_dssp EEEE---SST-THHHHHHHHHHHHHHHHHHT-EEEEEEETTS
T ss_pred eEEccCCCcC-chhHhhHHHHHHHHHHHHhCCEEEeeecCCC
Confidence 8999999988 788999999887654 6777777777654
No 135
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=25.59 E-value=71 Score=18.26 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=15.2
Q ss_pred ccccccHHHHHHHHHHHHh
Q psy12843 2 VGPGTGIAPFRSYIHTRIS 20 (103)
Q Consensus 2 Ia~GtGiaP~~s~l~~~~~ 20 (103)
+|.|=|-||+++..-.+..
T Consensus 33 vapgWGTtp~Mg~~m~lf~ 51 (73)
T PLN00055 33 VAPGWGTTPLMGVAMALFA 51 (73)
T ss_pred ccCCccchhHHHHHHHHHH
Confidence 5789999999998776643
No 136
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=25.48 E-value=2.8e+02 Score=20.51 Aligned_cols=51 Identities=4% Similarity=0.070 Sum_probs=35.3
Q ss_pred eEEEEEeeccCCCccccHHHHHHHHhC--CCeEEEEEEeCCCCCccchhHHHhh
Q psy12843 28 RLHLFFGCRNQGADFYFNQEWQNAIQA--NQLTLYTAFSRDQEEKITNNLSFES 79 (103)
Q Consensus 28 ~v~l~~g~r~~~~d~~~~~el~~~~~~--~~~~~~~~~s~~~~~~g~v~~~l~~ 79 (103)
++++..|+.-. ..=--.+-|+.+.+. .++++++-+|=+.+.+.|++++...
T Consensus 146 ~~tIlvGNSgd-~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~ 198 (322)
T PRK02797 146 KMTILVGNSGD-RSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQA 198 (322)
T ss_pred ceEEEEeCCCC-CcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHH
Confidence 49999998643 233334556666555 7889888898876667888876654
No 137
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=25.23 E-value=1.2e+02 Score=22.43 Aligned_cols=42 Identities=7% Similarity=0.120 Sum_probs=28.5
Q ss_pred ccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHH
Q psy12843 4 PGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEW 48 (103)
Q Consensus 4 ~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el 48 (103)
.|+|+|.++-+.+.+........ |.++.-...+ .-+.-.+.+
T Consensus 229 NasGva~llEiAr~l~~~~p~~~--v~f~~~~aEE-~Gl~GS~~~ 270 (435)
T COG2234 229 NASGVAALLELARVLKGNPPKRT--VRFVAFGAEE-SGLLGSEAY 270 (435)
T ss_pred ccHHHHHHHHHHHHHhcCCCCce--EEEEEecchh-hcccccHHH
Confidence 47999999999999887764433 7766665554 344444444
No 138
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=25.14 E-value=64 Score=21.03 Aligned_cols=15 Identities=13% Similarity=-0.079 Sum_probs=10.0
Q ss_pred ccCCCCcEEEEeecC
Q psy12843 87 YLGWDSTYIILIIRP 101 (103)
Q Consensus 87 ~l~~~~~~~yvcg~p 101 (103)
+.......+||+||.
T Consensus 86 ~~~~~~~~i~ViGG~ 100 (161)
T PF00186_consen 86 LAKDKDEEIFVIGGA 100 (161)
T ss_dssp HHTTSESEEEEEE-H
T ss_pred HhhccCCcEEEECCH
Confidence 344446899999985
No 139
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=24.41 E-value=85 Score=14.09 Aligned_cols=14 Identities=29% Similarity=0.562 Sum_probs=9.9
Q ss_pred ccHHHHHHHHHHHH
Q psy12843 6 TGIAPFRSYIHTRI 19 (103)
Q Consensus 6 tGiaP~~s~l~~~~ 19 (103)
+|+.++.|.++...
T Consensus 11 ~~LP~lISWIK~kr 24 (26)
T PF01372_consen 11 TGLPTLISWIKNKR 24 (26)
T ss_dssp THHHHHHHHHHHHH
T ss_pred hcChHHHHHHHHHh
Confidence 56778888877643
No 140
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=24.39 E-value=87 Score=22.93 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=16.2
Q ss_pred ccccccHHHHHHHHHHHHhc
Q psy12843 2 VGPGTGIAPFRSYIHTRISN 21 (103)
Q Consensus 2 Ia~GtGiaP~~s~l~~~~~~ 21 (103)
.+||||=||+.-.|-..+.+
T Consensus 58 ~vGGtGKTP~v~~L~~~l~~ 77 (325)
T PRK00652 58 TVGGTGKTPVVIALAEQLQA 77 (325)
T ss_pred eCCCCChHHHHHHHHHHHHH
Confidence 37999999999988776653
No 141
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=24.28 E-value=75 Score=24.30 Aligned_cols=38 Identities=11% Similarity=0.053 Sum_probs=26.0
Q ss_pred cccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCcc
Q psy12843 3 GPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADF 42 (103)
Q Consensus 3 a~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~ 42 (103)
+|||=|++...++.+++..+-... -|=+|.+.-+|.|-
T Consensus 310 sGGT~vSSA~~l~~~ii~erypp~--~wNiY~~~~SDGDN 347 (421)
T PF04285_consen 310 SGGTRVSSAYELALEIIEERYPPS--DWNIYVFHASDGDN 347 (421)
T ss_pred CCCeEehHHHHHHHHHHHhhCChh--hceeeeEEcccCcc
Confidence 699999999999999998653322 45555555443343
No 142
>KOG0736|consensus
Probab=24.05 E-value=68 Score=26.87 Aligned_cols=32 Identities=9% Similarity=-0.162 Sum_probs=22.4
Q ss_pred CccchhHHHhhc-HHhhccccCCCCcEEEEeec
Q psy12843 69 EKITNNLSFESR-VEAKIPYLGWDSTYIILIIR 100 (103)
Q Consensus 69 ~~g~v~~~l~~~-~~~l~~~l~~~~~~~yvcg~ 100 (103)
..|-|.|++..+ ..++-.+=+....+|||.|.
T Consensus 785 DSGGVMDRVVSQLLAELDgls~~~s~~VFViGA 817 (953)
T KOG0736|consen 785 DSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGA 817 (953)
T ss_pred CccccHHHHHHHHHHHhhcccCCCCCceEEEec
Confidence 678899887754 44444444457889999985
No 143
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=23.41 E-value=37 Score=25.10 Aligned_cols=15 Identities=47% Similarity=0.698 Sum_probs=11.2
Q ss_pred cccccHHHHHHHHHH
Q psy12843 3 GPGTGIAPFRSYIHT 17 (103)
Q Consensus 3 a~GtGiaP~~s~l~~ 17 (103)
++|||.||+.+=+..
T Consensus 108 GTGtGaaPVvakiak 122 (338)
T COG0206 108 GTGTGAAPVVAEIAK 122 (338)
T ss_pred CccccccHHHHHHHH
Confidence 578999999875443
No 144
>KOG2792|consensus
Probab=23.40 E-value=2.9e+02 Score=19.95 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=17.5
Q ss_pred EEEEEeeccCCCccccHHHHHHHHh
Q psy12843 29 LHLFFGCRNQGADFYFNQEWQNAIQ 53 (103)
Q Consensus 29 v~l~~g~r~~~~d~~~~~el~~~~~ 53 (103)
+.++||+.+- .| +..|||+++.+
T Consensus 142 ~LiYFGFThC-PD-ICPdELeKm~~ 164 (280)
T KOG2792|consen 142 SLIYFGFTHC-PD-ICPDELEKMSA 164 (280)
T ss_pred EEEEecccCC-CC-cChHHHHHHHH
Confidence 5778999877 67 57789987764
No 145
>PRK05325 hypothetical protein; Provisional
Probab=22.61 E-value=78 Score=24.05 Aligned_cols=38 Identities=13% Similarity=0.085 Sum_probs=26.6
Q ss_pred cccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCcc
Q psy12843 3 GPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADF 42 (103)
Q Consensus 3 a~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~ 42 (103)
+|||=|++.+-++.+++..+-... -|=+|.+..+|.|=
T Consensus 286 sGGT~vSSA~~l~~eIi~~rYpp~--~wNIY~f~aSDGDN 323 (401)
T PRK05325 286 SGGTIVSSAYKLALEIIEERYPPA--EWNIYAFQASDGDN 323 (401)
T ss_pred CCCeEehHHHHHHHHHHHhhCCHh--HCeeEEEEcccCCC
Confidence 799999999999999998654322 55556555443443
No 146
>PF12924 APP_Cu_bd: Copper-binding of amyloid precursor, CuBD; InterPro: IPR011178 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. This entry represents a copper-binding domain found within the extracellular domain, which is at the N-terminal of amyloidogenic glycoproteins such as amyloid-beta precursor protein (APP, or A4). The copper-binding domain has a dodecin-like fold consisting of a 2-layer alpha/beta topology []. More information about these protein can be found at Protein of the Month: Amyloid-beta Precursor Protein [].; GO: 0005488 binding, 0016021 integral to membrane; PDB: 3KTM_E 2FK3_D 2FK1_A 2FMA_A 2FJZ_A 2FKL_A 1OWT_A 2FK2_A.
Probab=22.37 E-value=45 Score=18.22 Aligned_cols=9 Identities=11% Similarity=0.091 Sum_probs=5.2
Q ss_pred cEEEEeecC
Q psy12843 93 TYIILIIRP 101 (103)
Q Consensus 93 ~~~yvcg~p 101 (103)
+.-||||+|
T Consensus 50 GvEfVCCP~ 58 (58)
T PF12924_consen 50 GVEFVCCPP 58 (58)
T ss_dssp EEEEEEEE-
T ss_pred ceeEecCCC
Confidence 344788765
No 147
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=22.34 E-value=61 Score=23.63 Aligned_cols=19 Identities=21% Similarity=0.343 Sum_probs=16.2
Q ss_pred CccccccHHHHHHHHHHHH
Q psy12843 1 MVGPGTGIAPFRSYIHTRI 19 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~ 19 (103)
.|+||||.+=+++=|+.+.
T Consensus 5 ~lgGGtG~~~lL~GL~~~~ 23 (303)
T PRK13606 5 VLSGGTGTAKLLRGLKAVL 23 (303)
T ss_pred EEeCccCHHHHHHHHHhcc
Confidence 3799999999999888774
No 148
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=22.03 E-value=49 Score=23.39 Aligned_cols=25 Identities=4% Similarity=0.068 Sum_probs=16.6
Q ss_pred ccHHHHHHHHhCCCe-EEEEEEeCCC
Q psy12843 43 YFNQEWQNAIQANQL-TLYTAFSRDQ 67 (103)
Q Consensus 43 ~~~~el~~~~~~~~~-~~~~~~s~~~ 67 (103)
+..++++++.+...+ ++.++++.++
T Consensus 99 v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 99 VIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred EehhhHHHhhhcccccccCEEEeCCC
Confidence 556677777776333 3677888776
No 149
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=21.14 E-value=52 Score=16.05 Aligned_cols=11 Identities=9% Similarity=-0.185 Sum_probs=8.1
Q ss_pred CcEEEEeecCC
Q psy12843 92 STYIILIIRPE 102 (103)
Q Consensus 92 ~~~~yvcg~p~ 102 (103)
+.+++.||+|-
T Consensus 8 ~~~~~~C~GtH 18 (44)
T smart00863 8 DFDVELCGGTH 18 (44)
T ss_pred CEEEECCCCcc
Confidence 45688999873
No 150
>KOG2480|consensus
Probab=20.93 E-value=51 Score=26.07 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=18.7
Q ss_pred ccccccHHHHHHHHHHHHhccc
Q psy12843 2 VGPGTGIAPFRSYIHTRISNQT 23 (103)
Q Consensus 2 Ia~GtGiaP~~s~l~~~~~~~~ 23 (103)
|+|||.++|=.++|+-+--++.
T Consensus 514 VGGGT~L~pQ~AcL~lLGv~G~ 535 (602)
T KOG2480|consen 514 VGGGTVLEPQGACLDLLGVRGA 535 (602)
T ss_pred ecCccccCcHHHHHHHhcCCCC
Confidence 7999999999999998765543
No 151
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=20.59 E-value=67 Score=23.93 Aligned_cols=55 Identities=13% Similarity=-0.026 Sum_probs=30.4
Q ss_pred ccccHHHHHHHHhCCCeEEEEEEeCCCCCccchhHHHhhcHHhhccccCCCCcEEEEeecC
Q psy12843 41 DFYFNQEWQNAIQANQLTLYTAFSRDQEEKITNNLSFESRVEAKIPYLGWDSTYIILIIRP 101 (103)
Q Consensus 41 d~~~~~el~~~~~~~~~~~~~~~s~~~~~~g~v~~~l~~~~~~l~~~l~~~~~~~yvcg~p 101 (103)
|-+-+|.|++.-.+ -|.-..++-|++=-.| ++.|. ..|..+|.+.+..+|+||.|
T Consensus 63 dD~GRdtLe~vyA~-vf~aE~a~VRpq~isG--THAI~---~aLfg~LRpgDell~i~G~P 117 (416)
T COG4100 63 DDLGRDTLERVYAQ-VFGAEAALVRPQIISG--THAIA---CALFGILRPGDELLYITGSP 117 (416)
T ss_pred cccchhHHHHHHHH-Hhccccceeeeeeecc--hhHHH---HHHHhccCCCCeEEEecCCc
Confidence 44667777654332 1112233333331111 23333 35677888889999999998
No 152
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=20.53 E-value=73 Score=15.41 Aligned_cols=12 Identities=8% Similarity=-0.219 Sum_probs=8.8
Q ss_pred CCCcEEEEeecC
Q psy12843 90 WDSTYIILIIRP 101 (103)
Q Consensus 90 ~~~~~~yvcg~p 101 (103)
+.+..+||+|.-
T Consensus 21 D~~GNiYv~G~T 32 (38)
T PF06739_consen 21 DSNGNIYVTGYT 32 (38)
T ss_pred CCCCCEEEEEee
Confidence 357779999853
No 153
>PRK08526 threonine dehydratase; Provisional
Probab=20.32 E-value=1.5e+02 Score=22.29 Aligned_cols=64 Identities=16% Similarity=0.255 Sum_probs=33.4
Q ss_pred CccccccHHHHHHHHHHHHhcccCCCceEEEEEeeccCCCccccHHHHH-HHHhCCC-eEEEEEEeCCC
Q psy12843 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQ-NAIQANQ-LTLYTAFSRDQ 67 (103)
Q Consensus 1 lIa~GtGiaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~~el~-~~~~~~~-~~~~~~~s~~~ 67 (103)
++++|+|-+++-++++......... +|.++...-+-| --.+..-++ .+..+++ +.+.+.+.+.+
T Consensus 272 i~ve~aga~~lAall~~~~~~~~~~--~Vv~ilsGGnid-~~~~~~i~~~~l~~~~r~~~~~~~~~d~p 337 (403)
T PRK08526 272 IVVEGAGAASVAALLHQKIDLKKGK--KIGVVLSGGNID-VQMLNIIIEKGLIKSYRKMKLHVTLVDKP 337 (403)
T ss_pred cEeeHHHHHHHHHHHhCccccccCC--eEEEEECCCCCC-HHHHHHHHHHHHHhcCCEEEEEEEcCCCC
Confidence 3678899999999885332211112 377777776652 223333232 2333444 33555555443
No 154
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=20.24 E-value=58 Score=21.54 Aligned_cols=9 Identities=56% Similarity=0.840 Sum_probs=6.1
Q ss_pred ccccHHHHH
Q psy12843 4 PGTGIAPFR 12 (103)
Q Consensus 4 ~GtGiaP~~ 12 (103)
+|||++|..
T Consensus 96 TGsG~~~~i 104 (192)
T smart00864 96 TGTGAAPVI 104 (192)
T ss_pred ccccHHHHH
Confidence 566777765
No 155
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=20.15 E-value=77 Score=20.24 Aligned_cols=16 Identities=19% Similarity=0.584 Sum_probs=11.6
Q ss_pred cccccHHHHHHHHHHH
Q psy12843 3 GPGTGIAPFRSYIHTR 18 (103)
Q Consensus 3 a~GtGiaP~~s~l~~~ 18 (103)
..|.||+|+..++++-
T Consensus 26 ~~~rGv~pL~~ll~~~ 41 (134)
T PF08973_consen 26 SDGRGVKPLYDLLNEE 41 (134)
T ss_dssp E--STTHHHHHHHHH-
T ss_pred eCCCChHHHHHHHHhC
Confidence 3589999999998874
Done!