RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12843
(103 letters)
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler
syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET:
FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A*
1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A*
3fjo_A* 1b1c_A*
Length = 618
Score = 106 bits (266), Expect = 2e-28
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQ--RLHLFFGCRNQGADFYFNQEWQNAIQANQLT 58
MVGPGTG+APF +I R + + L++GCR D+ + +E + LT
Sbjct: 471 MVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALT 530
Query: 59 -LYTAFSRDQEEKI 71
L AFSR+Q K+
Sbjct: 531 QLNVAFSREQSHKV 544
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome
P450 reductase, FNR, modular protein, oxidoreductase;
HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1
c.25.1.4 PDB: 1ddi_A*
Length = 374
Score = 103 bits (260), Expect = 3e-28
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT-L 59
M+GPGTGIAPFR+++ R + A + LFFG + DF + EWQ ++ LT +
Sbjct: 232 MIGPGTGIAPFRAFMQQR-AADEAPG-KNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRI 289
Query: 60 YTAFSRDQEEKI 71
A+SRDQ+EK+
Sbjct: 290 DLAWSRDQKEKV 301
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD,
oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB:
3qft_A*
Length = 458
Score = 104 bits (262), Expect = 4e-28
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQ--RLHLFFGCRNQGADFYFNQEWQNAIQANQLT 58
MVGPGTG+APF +I R + + L++GCR D+ + +E + LT
Sbjct: 311 MVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALT 370
Query: 59 -LYTAFSRDQEEKI 71
L AFSR+Q K+
Sbjct: 371 QLNVAFSREQSHKV 384
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD
and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4;
2.15A {Bacillus megaterium} PDB: 4dqk_A*
Length = 393
Score = 100 bits (252), Expect = 6e-27
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRL---HLFFGCRNQGADFYFNQEWQNAIQANQL 57
MVGPGTG+APFR ++ R Q L HL+FGCR+ D+ + +E +NA +
Sbjct: 245 MVGPGTGVAPFRGFVQAR-KQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGII 303
Query: 58 TLYTAFSR-DQEEKI 71
TL+TAFSR + K
Sbjct: 304 TLHTAFSRMPNQPKT 318
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain,
FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus
norvegicus} SCOP: b.43.4.1 c.25.1.4
Length = 435
Score = 99.3 bits (248), Expect = 2e-26
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 1 MVGPGTGIAPFRSYIHTR---ISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQL 57
+VGPGTGIAPFRS+ R I ++ + + L FGCR D + +E A
Sbjct: 284 LVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVF 343
Query: 58 T-LYTAFSRDQE-EKI 71
LYTA+SR+ + K
Sbjct: 344 RELYTAYSREPDRPKK 359
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+,
oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus
norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Length = 688
Score = 98.8 bits (246), Expect = 9e-26
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 1 MVGPGTGIAPFRSYIHTR---ISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQL 57
+VGPGTGIAPFRS+ R I ++ + + L FGCR D + +E A
Sbjct: 505 LVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVF 564
Query: 58 T-LYTAFSRDQE-EKI 71
LYTA+SR+ + K
Sbjct: 565 RELYTAYSREPDRPKK 580
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural
motif, flattened antiparallel BE barrel, flexible hinge
region, connecting domain; HET: FAD; 1.90A {Homo
sapiens} PDB: 2qtz_A*
Length = 539
Score = 97.9 bits (244), Expect = 1e-25
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 1 MVGPGTGIAPFRSYIHTR----ISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQ 56
MVGPGTGIAPF ++ R + + + LFFGCR++ D+ F +E ++ ++
Sbjct: 383 MVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRKELRHFLKHGI 442
Query: 57 LT-LYTAFSRD------QEEKI 71
LT L +FSRD +
Sbjct: 443 LTHLKVSFSRDAPVGEEEAPAK 464
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450
reductase, diflavin reductase, FAD, FMN-binding,
electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces
cerevisiae} PDB: 2bn4_A* 2bf4_A*
Length = 682
Score = 91.4 bits (227), Expect = 3e-23
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQ--------RLHLFFGCRNQGADFYFNQEWQNAI 52
M+GPGTG+APFR +I R++ + + + LF+G RN DF + EW
Sbjct: 529 MIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNT-DDFLYQDEWPEYA 587
Query: 53 QANQ--LTLYTAFSR-DQEEKI 71
+ + A SR +K+
Sbjct: 588 KKLDGSFEMVVAHSRLPNTKKV 609
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR,
reductase reductase, phycobilisome, thylakoid; HET: FAD;
1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A*
2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A*
1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A*
1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Length = 304
Score = 89.4 bits (222), Expect = 4e-23
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQ-------RLHLFFGCRNQGADFYFNQEWQNAIQ 53
M+ GTGI P R+Y+ + +A L FG + + +E + Q
Sbjct: 153 MLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTT-PNILYKEELEEIQQ 211
Query: 54 ANQLT--LYTAFSRDQEEK 70
L A SR+Q+
Sbjct: 212 KYPDNFRLTYAISREQKNP 230
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase
(NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia
oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A*
1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A*
1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Length = 314
Score = 89.4 bits (222), Expect = 4e-23
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQ---RLHLFFGCRNQGADFYFNQEWQNAIQANQL 57
M+G GTGIAPFRS++ + + LF G + + +E++ +
Sbjct: 167 MLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTS-SSLLYKEEFEKMKEKAPD 225
Query: 58 T--LYTAFSRDQEEK 70
L A SR+Q +
Sbjct: 226 NFRLDFAVSREQTNE 240
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A
{Leptospira interrogans} PDB: 2rc6_A*
Length = 314
Score = 88.7 bits (220), Expect = 7e-23
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQ-RLHLFFGCRNQGADFYFNQEWQNAIQANQLT- 58
+ GTGIAPF + ++ + L +G + + ++
Sbjct: 170 FLATGTGIAPFIGMSEELLEHKLIKFTGNITLVYGAPYS-DELVMMDYLKGLESKHKNFK 228
Query: 59 LYTAFSRDQEEK 70
L TA SR+++
Sbjct: 229 LITAISREEKNS 240
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase,
FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB:
3lvb_A* 1jb9_A*
Length = 311
Score = 88.6 bits (220), Expect = 8e-23
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQ---RLHLFFGCRNQGADFYFNQEWQNAIQ--AN 55
M+ GTG+APFR Y+ + + LF G N +++E+ + ++ +
Sbjct: 165 MIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANS-DSLLYDEEFTSYLKQYPD 223
Query: 56 QLTLYTAFSRDQEEK 70
A SR+Q+ +
Sbjct: 224 NFRYDKALSREQKNR 238
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase;
HET: FAD; 2.50A {Synechococcus SP}
Length = 402
Score = 89.2 bits (221), Expect = 1e-22
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQ---RLHLFFGCRNQGADFYFNQEWQNAIQANQL 57
M+ GTGIAPFR+++ Q + + L FG A+ + +++ N
Sbjct: 255 MLATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYT-ANILYKDDFEKMAAENPD 313
Query: 58 T--LYTAFSRDQEEK 70
L A SR+Q+
Sbjct: 314 NFRLTYAISREQKTA 328
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A
{Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A*
3jqp_A*
Length = 316
Score = 85.6 bits (212), Expect = 1e-21
Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 11/80 (13%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQ--------RLHLFFGCRNQGADFYFNQEWQNAI 52
+ GTGI+P+ S++ + + + +++G N+ + E +
Sbjct: 175 FIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNE-DSILYLNELEYFQ 233
Query: 53 QA--NQLTLYTAFSRDQEEK 70
+ N + ++ FS Q
Sbjct: 234 KMYPNNINIHYVFSYKQNSD 253
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding,
ferredoxin, NADH-binding, oxidoreductase; HET: FAD;
1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2
d.15.4.2
Length = 338
Score = 47.4 bits (113), Expect = 7e-08
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN-QLTL 59
M+ GTGIAPF S + S + L FG D ++ Q
Sbjct: 215 MLAGGTGIAPFLSMLQVLEQKG--SEHPVRLVFGVTQD-CDLVALEQLDALQQKLPWFEY 271
Query: 60 YTAFSRDQEE 69
T + + +
Sbjct: 272 RTVVAHAESQ 281
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase
superfami oxidoreductase; 2.20A {Escherichia coli} SCOP:
b.43.4.2 c.25.1.1
Length = 232
Score = 44.9 bits (107), Expect = 4e-07
Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQ 49
++ GTG + RS + T ++ + + +++G R + Y E +
Sbjct: 107 LIAGGTGFSYARSILLTALARN--PNRDITIYWGGREE-QHLYDLCELE 152
>1tvc_A Methane monooxygenase component C, methane monooxygenase;
FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR
{Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Length = 250
Score = 44.5 bits (106), Expect = 6e-07
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQN-AIQANQLTL 59
V GTG+AP S + + + ++FG + + ++ E ++ LT+
Sbjct: 122 FVAGGTGLAPVVSMVRQMQ--EWTAPNETRIYFGVNTE-PELFYIDELKSLERSMRNLTV 178
Query: 60 YTAFSRDQEE 69
+
Sbjct: 179 KACVWHPSGD 188
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase,
flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP:
b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Length = 248
Score = 39.6 bits (93), Expect = 4e-05
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQ--ANQLT 58
M+ GT I P+ S + L L R AD + Q + +L
Sbjct: 111 MLATGTAIGPYLSILRLGKDLDRFK--NLVLVHAARYA-ADLSYLPLMQELEKRYEGKLR 167
Query: 59 LYTAFSRDQEE 69
+ T SR+
Sbjct: 168 IQTVVSRETAA 178
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta
sheet, helix-FLA five-stranded parallel beta sheet,
lipid binding protein; HET: HEM FAD DGG; 1.75A
{Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Length = 403
Score = 38.2 bits (89), Expect = 1e-04
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQE-WQNAIQANQLTL 59
++ G G+ P S + + A +++ G RN A + A L L
Sbjct: 271 LISGGVGLTPMVSMLKVAL---QAPPRQVVFVHGARN-SAVHAMRDRLREAAKTYENLDL 326
Query: 60 YTAFSRDQEE 69
+ + + E
Sbjct: 327 FVFYDQPLPE 336
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit;
alpha-beta-alpha sandwich, structural genomics, PSI-2;
HET: FAD; 2.95A {Porphyromonas gingivalis}
Length = 290
Score = 38.0 bits (88), Expect = 2e-04
Identities = 13/70 (18%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQN-AIQANQLTL 59
+G G G+AP R+ I + +++ ++G R++ + ++ ++++ +
Sbjct: 161 YIGGGAGMAPLRAQILHLFRTL-KTGRKVSYWYGARSK-NEIFYEEDFREIEREFPNFKF 218
Query: 60 YTAFSRDQEE 69
+ A S Q E
Sbjct: 219 HIALSDPQPE 228
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas
aeruginosa} PDB: 3crz_A* 1a8p_A*
Length = 257
Score = 37.4 bits (87), Expect = 2e-04
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 12/78 (15%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQ------- 53
++ GTG+APF S I +++ L G R ++ + +
Sbjct: 111 LLSTGTGMAPFLSVIQDP--ETYERYEKVILVHGVRWV-SELAYADFITKVLPEHEYFGD 167
Query: 54 --ANQLTLYTAFSRDQEE 69
+L Y +R+
Sbjct: 168 QVKEKLIYYPLVTREPFR 185
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H)
reductase, flavoproteins, electron transfer,
oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter
capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Length = 272
Score = 36.7 bits (85), Expect = 4e-04
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN----- 55
+ GTGIAPF S + + + + + CR A+ + ++ A+Q +
Sbjct: 125 FLATGTGIAPFASLMREPEAYE--KFDEVIMMHACRTV-AELEYGRQLVEALQEDPLIGE 181
Query: 56 ----QLTLYTAFSRDQEE 69
+L Y +R++
Sbjct: 182 LVEGKLKYYPTTTREEFH 199
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD,
iron transpor; HET: FAD HEM; 2.19A {Escherichia coli}
SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Length = 396
Score = 35.9 bits (83), Expect = 8e-04
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN-QLTL 59
++ G G P + + T + +++ F N G F E + Q+ + T
Sbjct: 264 LISAGVGQTPMLAMLDTLA--KAGHTAQVNWFHAAEN-GDVHAFADEVKELGQSLPRFTA 320
Query: 60 YTAFSRDQEE 69
+T + + E
Sbjct: 321 HTWYRQPSEA 330
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme,
oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A
{Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Length = 270
Score = 34.4 bits (79), Expect = 0.003
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQ 49
M+ G+GI P I + +Q +HL + R + D E
Sbjct: 141 MICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTE-DDILLRDELD 188
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural
genomics, national institute allergy and infectious
diseases; HET: FAD; 2.10A {Burkholderia thailandensis}
PDB: 4f7d_A*
Length = 271
Score = 32.8 bits (75), Expect = 0.010
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN----- 55
M+ GTG+APF S I + ++ L CR + + + ++ + +
Sbjct: 127 MLSTGTGLAPFMSIIRDPDIYERFD--KVVLTHTCRLK-GELAYMDYIKHDLPGHEYLGD 183
Query: 56 ----QLTLYTAFSRDQEE 69
+L Y +R++ E
Sbjct: 184 VIREKLVYYPTVTREEFE 201
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel,
FAD-binding domain, NADH-binding domain, oxidoreductase;
HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1
PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Length = 275
Score = 30.9 bits (70), Expect = 0.045
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQN--AIQANQLT 58
M+ GTGI P I + + HL F + + D E + + +
Sbjct: 151 MIAGGTGITPMLQVIRAIMKD-PDDHTVCHLLFANQTE-KDILLRPELEELRNKHSARFK 208
Query: 59 LYTAFSRDQEE 69
L+ R E
Sbjct: 209 LWYTLDRAPEA 219
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain,
NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum
polycephalum}
Length = 243
Score = 29.9 bits (68), Expect = 0.086
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 1 MVGPGTGIAPFRS---YIHTRISNQTASAQRLHLFFGCRNQGADFYFNQE 47
M+ GTGI P I +T ++L F N+ D E
Sbjct: 121 MIAGGTGITPMLQVARAIIKNPKEKT----IINLIFANVNE-DDILLRTE 165
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 1.0
Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 24/96 (25%)
Query: 10 PFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEW-QNAIQA-------------- 54
Y ++ I + + + R + + + + I+
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRM----VFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 55 -NQLTLYTAFSRDQ----EEKITNNLSFESRVEAKI 85
QL Y + D E + L F ++E +
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 2.3
Identities = 10/59 (16%), Positives = 15/59 (25%), Gaps = 27/59 (45%)
Query: 11 FRSYIHTR------ISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLYTAF 63
++YI R ++ SA LF A+ L F
Sbjct: 123 IKNYITARIMAKRPFDKKSNSA----LF-----------------RAVGEGNAQLVAIF 160
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain,
oxidoreductase; 2.00A {Homo sapiens}
Length = 186
Score = 25.9 bits (56), Expect = 2.6
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 1 MVGPGTGIAPFRSYI-----HTRISNQTASAQRLHLFFGCRNQGADFYFNQE 47
+VG G G+ PF S + + ++++ ++ CR+ A +F
Sbjct: 22 LVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADL 73
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.409
Gapped
Lambda K H
0.267 0.0645 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,508,379
Number of extensions: 69361
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 30
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)