RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12843
(103 letters)
>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 160
Score = 72.8 bits (178), Expect = 2e-18
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 1 MVGPGTGIAPFRSYIHTR--ISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQL- 57
MVGPGTGIAPF +I R + Q L++GCR D+ + +E + L
Sbjct: 12 MVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALT 71
Query: 58 TLYTAFSRDQEEK 70
L AFSR+Q K
Sbjct: 72 QLNVAFSREQAHK 84
>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase
FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 165
Score = 69.0 bits (168), Expect = 7e-17
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 1 MVGPGTGIAPFRSYIHTR---ISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQAN-Q 56
+VGPGTGIAPFRS+ R I ++ + + L FGCR D + +E A
Sbjct: 14 LVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVF 73
Query: 57 LTLYTAFSRDQEE--KITNNLSFESRVEAKIPYLGWDSTYIIL 97
LYTA+SR+ + K ++ E E+ L +I +
Sbjct: 74 RELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYV 116
>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein
{Escherichia coli [TaxId: 562]}
Length = 153
Score = 56.8 bits (136), Expect = 3e-12
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT-L 59
M+GPGTGIAPFR+++ R +++ + + LFFG + DF + EWQ ++ LT +
Sbjct: 11 MIGPGTGIAPFRAFMQQRAADE--APGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRI 68
Query: 60 YTAFSRDQEEKITNNLSFESRVEAKIPYLGWDSTYIILIIRPE 102
A+SRDQ+EK+ + ++ D +I +
Sbjct: 69 DLAWSRDQKEKVYVQDKLREQGAELWRWI-NDGAHIYVCGDAN 110
>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin
reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 160
Score = 55.7 bits (133), Expect = 1e-11
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTAS--AQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT 58
M+G GTGIAPFRS++ + L F + + +E++ +
Sbjct: 13 MLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDN 72
Query: 59 LYTAFSRDQE 68
F+ +E
Sbjct: 73 FRLDFAVSRE 82
>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin
reductase) {Maize (Zea mays), root isoform [TaxId:
4577]}
Length = 154
Score = 54.5 bits (130), Expect = 3e-11
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLH--LFFGCRNQGADFYFNQEWQNAIQA--NQ 56
M+ GTG+APFR Y+ + + F +++E+ + ++ +
Sbjct: 8 MIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDN 67
Query: 57 LTLYTAFSRDQEE 69
A SR+Q+
Sbjct: 68 FRYDKALSREQKN 80
>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin
reductase) {Cyanobacterium (Anabaena sp.), pcc 7119
[TaxId: 1167]}
Length = 162
Score = 51.9 bits (123), Expect = 3e-10
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQ-------RLHLFFGCRNQGADFYFNQEWQNAIQ 53
M+ GTGI P R+Y+ + +A L FG Y + + +
Sbjct: 11 MLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 70
Query: 54 -ANQLTLYTAFSRDQEE 69
+ L A SR+Q+
Sbjct: 71 YPDNFRLTYAISREQKN 87
>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain
{Alcaligenes eutrophus [TaxId: 106590]}
Length = 142
Score = 49.5 bits (117), Expect = 1e-09
Identities = 14/104 (13%), Positives = 31/104 (29%), Gaps = 5/104 (4%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLY 60
++ G G+ P S + + +++ G RN ++ + A L L+
Sbjct: 10 LISGGVGLTPMVSMLKVALQAPP---RQVVFVHGARNSAVHAMRDRLREAAKTYENLDLF 66
Query: 61 TAFSRDQEEKITNNLSFESRV--EAKIPYLGWDSTYIILIIRPE 102
+ + E + + +I I P
Sbjct: 67 VFYDQPLPEDVQGRDYDYPGLVDVKQIEKSILLPDADYYICGPI 110
>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 143
Score = 49.5 bits (117), Expect = 2e-09
Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLY 60
++ G G P + + T +++ F N + ++ + + T +
Sbjct: 11 LISAGVGQTPMLAMLDTLAKAG--HTAQVNWFHAAENGDVHAFADEVKELGQSLPRFTAH 68
Query: 61 TAFSRDQEE 69
T + + E
Sbjct: 69 TWYRQPSEA 77
>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays)
[TaxId: 4577]}
Length = 146
Score = 43.0 bits (100), Expect = 5e-07
Identities = 10/50 (20%), Positives = 20/50 (40%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQN 50
M+ G+GI P I + +Q +HL + R + ++ +
Sbjct: 17 MICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDILLRDELDRW 66
>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin
reductase) {Azotobacter vinelandii [TaxId: 354]}
Length = 158
Score = 43.0 bits (100), Expect = 7e-07
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQ 56
M+ GTG+APF S I + +++ L G R Y ++ Q+
Sbjct: 12 MLSTGTGLAPFMSLIQDPEVYE--RFEKVVLIHGVRQVNELAYQQFITEHLPQSEY 65
>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin
reductase) {Escherichia coli [TaxId: 562]}
Length = 148
Score = 39.2 bits (90), Expect = 1e-05
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLY 60
M+ GT I P+ S + L L R AD + Q + + L
Sbjct: 11 MLATGTAIGPYLSILRLGKDLDRFK--NLVLVHAARYA-ADLSYLPLMQELEKRYEGKLR 67
Query: 61 TAFSRDQEE 69
+E
Sbjct: 68 IQTVVSRET 76
>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase
{Escherichia coli [TaxId: 562]}
Length = 135
Score = 39.1 bits (90), Expect = 1e-05
Identities = 13/95 (13%), Positives = 35/95 (36%), Gaps = 2/95 (2%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLY 60
++ GTG + RS + T ++ + + +++G R + + + +++ L +
Sbjct: 10 LIAGGTGFSYARSILLTALARN--PNRDITIYWGGREEQHLYDLCELEALSLKHPGLQVV 67
Query: 61 TAFSRDQEEKITNNLSFESRVEAKIPYLGWDSTYI 95
+ + + + V L YI
Sbjct: 68 PVVEQPEAGWRGRTGTVLTAVLQDHGTLAEHDIYI 102
>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK
subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}
Length = 160
Score = 39.0 bits (90), Expect = 2e-05
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQN 50
++G G G+ P ++ + G ++ E+ N
Sbjct: 13 IIGGGIGVPPLYELAKQLEKTG----CQMTILLGFASE-NVKILENEFSN 57
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase
{Acinetobacter sp. [TaxId: 472]}
Length = 133
Score = 38.3 bits (88), Expect = 2e-05
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLY 60
M+ GTGIAPF S + S + L FG Q +
Sbjct: 10 MLAGGTGIAPFLSMLQVLEQKG--SEHPVRLVFGVTQDCDLVALEQLDALQQKLPWFEYR 67
Query: 61 TAFSRDQEE 69
T + + +
Sbjct: 68 TVVAHAESQ 76
>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase
{Pseudomonas cepacia, db01 [TaxId: 292]}
Length = 120
Score = 37.6 bits (86), Expect = 3e-05
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLY 60
+V G GI P S + + L++ R+ F E + + + ++
Sbjct: 13 LVAGGIGITPMLSMARQLRAEGL---RSFRLYYLTRDPE-GTAFFDELTSDEWRSDVKIH 68
Query: 61 TAFSRDQE 68
+
Sbjct: 69 HDHGDPTK 76
>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 147
Score = 38.0 bits (87), Expect = 4e-05
Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 3/98 (3%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLT-- 58
M+ GTGI P I + + HL F + + + + + +
Sbjct: 23 MIAGGTGITPMLQVIRAIMKDP-DDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKL 81
Query: 59 LYTAFSRDQEEKITNNLSFESRVEAKIPYLGWDSTYII 96
YT + E + +P + ++
Sbjct: 82 WYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLM 119
>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C,
MmoC {Methylococcus capsulatus [TaxId: 414]}
Length = 141
Score = 35.3 bits (80), Expect = 3e-04
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 1 MVGPGTGIAPFRSYIHTRISNQTASAQRLHLFFGCRNQGADFYFNQEWQNAIQANQLTLY 60
V GTG+AP S + + ++FG + FY ++ LT+
Sbjct: 13 FVAGGTGLAPVVSMVRQMQEWT--APNETRIYFGVNTEPELFYIDELKSLERSMRNLTVK 70
Query: 61 TAFSRDQEE 69
+
Sbjct: 71 ACVWHPSGD 79
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.409
Gapped
Lambda K H
0.267 0.0459 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 370,667
Number of extensions: 13201
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 19
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.6 bits)